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comparison segToGeneMatrix.xml @ 60:bf57076e27b9 default tip

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change genomicSegment input data
author jingchunzhu@gmail.com
date Tue, 27 Oct 2015 16:07:09 -0700
parents eef100efcc4c
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59:b88b95642f59 60:bf57076e27b9
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29 **Given a segmented copy number data file, convert it into gene-level matrix data, also xena ready** 29 **Given a segmented copy number data file, convert it into gene-level matrix data, also xena ready**
30 30
31 1. Input data file format: tab-deliminated 31 1. Input data file format: tab-deliminated
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33 ======= ===== ======= ===== ====== ====== 33 ======= ===== ======= ===== ======
34 sample chr start end strand value 34 sample chr start end value
35 ======= ===== ======= ===== ====== ====== 35 ======= ===== ======= ===== ======
36 sample1 chr1 1 100 . 0.5 36 sample1 chr1 1 100 0.5
37 sample2 chr1 101 1000 . 1.5 37 sample2 chr1 101 1000 1.5
38 sample3 chr1 1000 2000 . -0.5 38 sample3 chr1 1000 2000 -0.5
39 ... ... ... ... ... ... 39 ... ... ... ... ...
40 ======= ===== ======= ===== ====== ====== 40 ======= ===== ======= ===== ======
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43 2. Output file: gene-level matrix file 43 2. Output file: gene-level matrix file
44 44
45 </help> 45 </help>