Mercurial > repos > melissacline > ucsc_cancer_utilities
comparison seg2matrix/CGData/SegToMatrix.py @ 35:8ef79bd0be9a
modify
| author | jingchunzhu <jingchunzhu@gmail.com> |
|---|---|
| date | Fri, 24 Jul 2015 16:14:36 -0700 |
| parents | ab20c0d04f4a |
| children | 59dbe857f5d4 |
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| 34:d8e98030eca9 | 35:8ef79bd0be9a |
|---|---|
| 1 | |
| 2 | |
| 3 import ctypes | 1 import ctypes |
| 4 import os | 2 import os |
| 5 | 3 |
| 6 base = os.path.dirname(os.path.abspath(__file__)) | 4 base = os.path.dirname(os.path.abspath(__file__)) |
| 7 libFile = base + "/CsegToMatrix.so" | 5 libFile = base + "/CsegToMatrix.so" |
| 6 | |
| 7 os.system("rm -f "+ base+"/CsegToMatrix.so") | |
| 8 os.system("g++ -fPIC --shared "+ base +"/CsegToMatrix.cc -o "+ base +"/CsegToMatrix.so") | |
| 9 | |
| 8 if os.path.exists(libFile): | 10 if os.path.exists(libFile): |
| 9 segLib = ctypes.cdll.LoadLibrary(libFile) | 11 segLib = ctypes.cdll.LoadLibrary(libFile) |
| 10 | 12 |
| 11 | 13 |
| 12 def seg_to_matrix(seg_handle, out_handle): | 14 def seg_to_matrix(seg_handle, out_handle): |