comparison mergeGenomicMatrixFiles.py @ 8:5d4538cb38db

When opening files for reading, changed the open() mode from 'r' to 'U' to accommodate non-unix systems

7:1d150e860c4d

def header (samples, sourceFiles, infile, labelThisFile):
    if labelThisFile == None:
        labelToUse = infile
    else:
        labelToUse = labelThisFile
    fin= open(infile,'r')
    #header, samples
    newSamples = string.split(string.strip(fin.readline()),'\t')[1:]
    for sample in newSamples:
        if sample not in samples:
            samples[sample]= len(samples)

    return

def process(genes, samples, dataMatrix, infile):
    maxLength= len(samples)

    fin= open(infile,'r')
    #header 
    newSamples = string.split(string.strip(fin.readline()),'\t')
    
    while 1:
        line = fin.readline()[:-1]

8:5d4538cb38db

def header (samples, sourceFiles, infile, labelThisFile):
    if labelThisFile == None:
        labelToUse = infile
    else:
        labelToUse = labelThisFile
    fin= open(infile, 'U')
    #header, samples
    newSamples = string.split(string.strip(fin.readline()),'\t')[1:]
    for sample in newSamples:
        if sample not in samples:
            samples[sample]= len(samples)

    return

def process(genes, samples, dataMatrix, infile):
    maxLength= len(samples)

    fin= open(infile,'U')
    #header 
    newSamples = string.split(string.strip(fin.readline()),'\t')
    
    while 1:
        line = fin.readline()[:-1]