comparison seg2matrix/CGData/CsegToMatrix.cc @ 54:59dbe857f5d4

introduce normal_CNV parameter

53:7de3db823f90

	}	
}



void print_matrix(segmap *data, set<string> *targetSet, void (*print)(const char *)) {
	
	//create a break map
	breakmap breaks;
	for( segmap::iterator t = data->begin(); t!=data->end(); ++t) {
		for ( chromemap::iterator c = t->second.begin(); c != t->second.end(); ++c) {

			print(probeName[i].c_str());
			for ( int j = 0; j < targetCount; j++ ) {
				float val = gm[i][j];
				print("\t");
				if ( val == MISSING_VAL )
					print("NA");
				else {							
					char str[20]  = "";
					sprintf(str, "%f", val);
					print(str);
				}

54:59dbe857f5d4

	}	
}



void print_matrix(segmap *data, set<string> *targetSet, void (*print)(const char *), char* NORMAL_CNV) {
	
	//create a break map
	breakmap breaks;
	for( segmap::iterator t = data->begin(); t!=data->end(); ++t) {
		for ( chromemap::iterator c = t->second.begin(); c != t->second.end(); ++c) {

			print(probeName[i].c_str());
			for ( int j = 0; j < targetCount; j++ ) {
				float val = gm[i][j];
				print("\t");
				if ( val == MISSING_VAL )
					print(NORMAL_CNV);
				else {							
					char str[20]  = "";
					sprintf(str, "%f", val);
					print(str);
				}