Mercurial > repos > melissacline > ucsc_cancer_utilities
comparison seg2matrix/CGData/GeneMap.py @ 58:3e5680fecd7a
accept chr1 and 1
| author | jingchunzhu |
|---|---|
| date | Tue, 22 Sep 2015 15:16:19 -0700 |
| parents | ab20c0d04f4a |
| children |
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| 57:eef100efcc4c | 58:3e5680fecd7a |
|---|---|
| 22 a given probe description and a gene, examples include 'gene_overlap' | 22 a given probe description and a gene, examples include 'gene_overlap' |
| 23 and 'gene_simple_meth_overlap' | 23 and 'gene_simple_meth_overlap' |
| 24 """ | 24 """ |
| 25 if cmp_func is None: | 25 if cmp_func is None: |
| 26 cmp_func = self.cmp_func | 26 cmp_func = self.cmp_func |
| 27 | |
| 27 if not ref_gene.has_chrom(segment.chrom): | 28 if not ref_gene.has_chrom(segment.chrom): |
| 28 return [] | 29 return [] |
| 29 chromList = ref_gene.get_chrom(segment.chrom) | 30 chromList = ref_gene.get_chrom(segment.chrom) |
| 30 | 31 |
| 31 out = [] | 32 out = [] |