Mercurial > repos > melissacline > ucsc_cancer_utilities

comparison segToMatrix.xml @ 56:2a240b005731

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author jingchunzhu
date Fri, 18 Sep 2015 11:03:59 -0700
parents 59dbe857f5d4
children bf57076e27b9
comparison
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55:1093078e7976 56:2a240b005731
30 **Given a segmented copy number data file, convert it into xena ready matrix file.** 30 **Given a segmented copy number data file, convert it into xena ready matrix file.**
31 31
32 1. Input data file format: tab-deliminated 32 1. Input data file format: tab-deliminated
33 33
34 ======= ===== ======= ===== ====== ====== 34 ======= ===== ======= ===== ====== ======
35 sanmple chr start end strand value 35 sample chr start end strand value
36 ======= ===== ======= ===== ====== ====== 36 ======= ===== ======= ===== ====== ======
37 sample1 chr1 1 100 . 0.5 37 sample1 chr1 1 100 . 0.5
38 sample2 chr1 101 1000 . 1.5 38 sample2 chr1 101 1000 . 1.5
39 sample3 chr1 1000 2000 . -0.5 39 sample3 chr1 1000 2000 . -0.5
40 ... ... ... ... ... ... 40 ... ... ... ... ... ...