Mercurial > repos > melissacline > ucsc_cancer_utilities
comparison segToGeneMatrix.xml @ 56:2a240b005731
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| author | jingchunzhu |
|---|---|
| date | Fri, 18 Sep 2015 11:03:59 -0700 |
| parents | 59dbe857f5d4 |
| children | eef100efcc4c |
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| 55:1093078e7976 | 56:2a240b005731 |
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| 29 **Given a segmented copy number data file, convert it into gene-level matrix data, also xena ready** | 29 **Given a segmented copy number data file, convert it into gene-level matrix data, also xena ready** |
| 30 | 30 |
| 31 1. Input data file format: tab-deliminated | 31 1. Input data file format: tab-deliminated |
| 32 | 32 |
| 33 ======= ===== ======= ===== ====== ====== | 33 ======= ===== ======= ===== ====== ====== |
| 34 sanmple chr start end strand value | 34 sample chr start end strand value |
| 35 ======= ===== ======= ===== ====== ====== | 35 ======= ===== ======= ===== ====== ====== |
| 36 sample1 chr1 1 100 . 0.5 | 36 sample1 chr1 1 100 . 0.5 |
| 37 sample2 chr1 101 1000 . 1.5 | 37 sample2 chr1 101 1000 . 1.5 |
| 38 sample3 chr1 1000 2000 . -0.5 | 38 sample3 chr1 1000 2000 . -0.5 |
| 39 ... ... ... ... ... ... | 39 ... ... ... ... ... ... |