Mercurial > repos > melissacline > ucsc_cancer_utilities

comparison mergeGenomicFiles.xml @ 42:03b7b1cf78ce

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fix
author jingchunzhu
date Thu, 06 Aug 2015 00:30:49 -0700
parents 9806198df91f
children eb5acf81e609
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41:9806198df91f 42:03b7b1cf78ce
20 <param type="text" name="labelForDatasetA" label="Dataset A Label (eg. A)" value="dataset A"/> 20 <param type="text" name="labelForDatasetA" label="Dataset A Label (eg. A)" value="dataset A"/>
21 <param name="inputB" format="tabular" type="data" label="Genomic Matrix B"/> 21 <param name="inputB" format="tabular" type="data" label="Genomic Matrix B"/>
22 <param type="text" name="labelForDatasetB" label="Dataset B Label (eg. B)" value="dataset B"/> 22 <param type="text" name="labelForDatasetB" label="Dataset B Label (eg. B)" value="dataset B"/>
23 </inputs> 23 </inputs>
24 <outputs> 24 <outputs>
25 <data name="outputSourceMatrix" format="tabular" label="Data Source ${labelForDatasetB}+${labelForDatasetA}"/> 25 <data name="outputSourceMatrix" format="tabular" label="Data Source ${labelForDatasetA}+${labelForDatasetB}"/>
26 <data name="outputC" format="tabular" label="Genomic Matrix ${labelForDatasetB}+${labelForDatasetA}"/> 26 <data name="outputC" format="tabular" label="Genomic Matrix ${labelForDatasetA}+${labelForDatasetB}"/>
27 </outputs> 27 </outputs>
28 <help> 28 <help>
29 ***Merge Genomic Datasets*** 29 ***Merge Genomic Datasets***
30 30
31 Given two genomic datasets, merge them to produce a third dataset that is the union of the first two. The new dataset will contain all column labels from either dataset, and all row labels from either dataset. If a row label appears in both datasets, the output dataset will contain, for that row, all values for the first set of columns, plus all values for the second set of columns. If a row label appears in the first dataset only, the output dataset will contain the values for the columns of the first dataset, and blanks (indicating missing values) for the columns of the second dataset. 31 Given two genomic datasets, merge them to produce a third dataset that is the union of the first two. The new dataset will contain all column labels from either dataset, and all row labels from either dataset. If a row label appears in both datasets, the output dataset will contain, for that row, all values for the first set of columns, plus all values for the second set of columns. If a row label appears in the first dataset only, the output dataset will contain the values for the columns of the first dataset, and blanks (indicating missing values) for the columns of the second dataset.