Mercurial > repos > melissacline > ucsc_cancer_utilities

annotate seg2matrix/getRefGene_hg19.sh @ 60:bf57076e27b9 default tip

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change genomicSegment input data
author jingchunzhu@gmail.com
date Tue, 27 Oct 2015 16:07:09 -0700
parents ab20c0d04f4a
children
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1 #!/bin/bash
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2
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3 curl -O http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz
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4 gunzip -c refGene.txt.gz > refGene_hg19
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5 echo '{ "name" : "refGene_hg19", "type" : "genePredExt", "assembly" : "hg19", "url":"http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz"}' > refGene_hg19.json