Mercurial > repos > melissacline > ucsc_cancer_utilities

annotate seg2matrix/getRefGene_hg19.sh @ 46:ebf3bc09c383

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
add snpEff code
author jingchunzhu
date Thu, 13 Aug 2015 21:49:03 -0700
parents ab20c0d04f4a
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
31
ab20c0d04f4a add seg2matrix tool
jingchunzhu
parents:
diff changeset
1 #!/bin/bash
ab20c0d04f4a add seg2matrix tool
jingchunzhu
parents:
diff changeset
2
ab20c0d04f4a add seg2matrix tool
jingchunzhu
parents:
diff changeset
3 curl -O http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz
ab20c0d04f4a add seg2matrix tool
jingchunzhu
parents:
diff changeset
4 gunzip -c refGene.txt.gz > refGene_hg19
ab20c0d04f4a add seg2matrix tool
jingchunzhu
parents:
diff changeset
5 echo '{ "name" : "refGene_hg19", "type" : "genePredExt", "assembly" : "hg19", "url":"http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz"}' > refGene_hg19.json