Mercurial > repos > melissacline > ucsc_cancer_utilities

annotate seg2matrix/getRefGene_hg19.sh @ 37:e81019e3ac99

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Updated synapseGetDataset to look at the filename rather than the (no longer existant) content type field to determine if the data is in zip format
author melissacline
date Mon, 27 Jul 2015 16:29:24 -0700
parents ab20c0d04f4a
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 #!/bin/bash
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2
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3 curl -O http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz
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4 gunzip -c refGene.txt.gz > refGene_hg19
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5 echo '{ "name" : "refGene_hg19", "type" : "genePredExt", "assembly" : "hg19", "url":"http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz"}' > refGene_hg19.json