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2 import csv
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3 import CGData
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4 import CGData.BaseMatrix
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5
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6 class GenomicMatrix(CGData.BaseMatrix.BaseMatrix):
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7
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8 __format__ = {
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9 "name" : "genomicMatrix",
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10 "type" : "type",
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11 "form" : "matrix",
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12 "rowType" : "probeMap",
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13 "colType" : "idMap",
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14 "valueType" : "float",
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15 "nullString" : "NA",
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16 "links" : {
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17 "dataSubType" : {}
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18 }
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19 }
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20
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21 def __init__(self):
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22 CGData.BaseMatrix.BaseMatrix.__init__(self)
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23
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24 def init_blank(self, cols, rows):
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25 super(GenomicMatrix, self).init_blank(cols=cols,rows=rows)
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26 if 'cgdata' not in self:
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27 self['cgdata'] = { 'type' : 'genomicMatrix' }
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28
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29 def get_probe_list(self):
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30 return self.get_row_list()
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31
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32 def get_sample_list(self):
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33 return self.get_col_list()
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34
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35 def get_data_subtype(self):
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36 return self.get('cgdata', {}).get('dataSubType', None)
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37
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