Mercurial > repos > melissacline > ucsc_cancer_browser_stats
changeset 11:cd4c13ae11ce
modify
| author | jingchunzhu |
|---|---|
| date | Fri, 31 Jul 2015 13:32:25 -0700 |
| parents | c165b0267f0e |
| children | fd8529cd1564 |
| files | ttest/stats.xml |
| diffstat | 1 files changed, 4 insertions(+), 5 deletions(-) [+] |
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--- a/ttest/stats.xml Fri Jul 31 12:34:27 2015 -0700 +++ b/ttest/stats.xml Fri Jul 31 13:32:25 2015 -0700 @@ -1,11 +1,10 @@ -<tool id="ucscCancerBrowserStats" description="Statistical Tests of Difference" name="UCSC Cancer Browser Stats" version="0.0.1"> - <description>Apply statistical tests of difference to the rows in a genomic matrix, where the columns are categorized by a second (clinical) matrix</description> +<tool id="ucscCancerBrowserStats" description="t-tests of Difference in genomic data" name="Difference between categories (t-test)" version="0.0.1"> <command interpreter="python"> stats.py $genomicMatrix $clinicalFeatures $outFile -a="${category1}" -b="${category2}" </command> <inputs> <param format="tabular" name="genomicMatrix" type="data" label="Genomic Matrix"/> - <param format="tabular" name="clinicalFeatures" type="data" label="Clinical Matrix"/> + <param format="tabular" name="clinicalFeatures" type="data" label="Phenotype Matrix"/> <param type="text" name="category1" label="Category 1" optional="false"/> <param type="text" name="category2" label="Category 2" optional="false"/> </inputs> @@ -16,8 +15,8 @@ <requirement type="package" version="1.0" >cancerBrowserStats</requirement> </requirements> <tests> - <param name="genomicMatrix" value="sample.genomic.matrix.txt"/> - <param name="clinicalMatrix" value="sample.clinical.matrix.txt"/> + <param name="genomicMatrix" value="sample.genomic.matrix.txt" /> + <param name="clinicalMatrix" value="sample.clinical.matrix.txt" /> <param name="category1" value="A"/> <param name="category2" value="B"/> <output name="outFile" value="sample.stats.output.txt"/>