# HG changeset patch
# User jingchunzhu@gmail.com
# Date 1438317735 25200
# Node ID f55d3b781adb5454dd24ee7fb7953634fad20c7e
# Parent  14c406f8fca62be91ee2f327ccd6638cb9039db0
check file input ignore bad lines`

diff -r 14c406f8fca6 -r f55d3b781adb ttest/stats.py
--- a/ttest/stats.py	Wed Oct 22 18:14:35 2014 -0700
+++ b/ttest/stats.py	Thu Jul 30 21:42:15 2015 -0700
@@ -28,6 +28,8 @@
     outfile.write("%s\tStatistic\tpValue\tMedian1\tMedian2\tDelta\n" % (headerTokens[0]))
     for row in genomicFp:
         tokens = row.rstrip().split("\t")
+        if len(tokens)!= len(headerTokens):
+            continue
         symbol = tokens[0]
         groupATokens = [tokens[ii] for ii in columnsGroupA]
         groupBTokens = [tokens[ii] for ii in columnsGroupB]