diff ttest/stats.xml @ 11:cd4c13ae11ce

modify

--- a/ttest/stats.xml	Fri Jul 31 12:34:27 2015 -0700
+++ b/ttest/stats.xml	Fri Jul 31 13:32:25 2015 -0700
@@ -1,11 +1,10 @@
-<tool id="ucscCancerBrowserStats" description="Statistical Tests of Difference" name="UCSC Cancer Browser Stats" version="0.0.1">
-  <description>Apply statistical tests of difference to the rows in a genomic matrix, where the columns are categorized by a second (clinical) matrix</description>
+<tool id="ucscCancerBrowserStats" description="t-tests of Difference in genomic data" name="Difference between categories (t-test)" version="0.0.1">
   <command interpreter="python">
     stats.py  $genomicMatrix $clinicalFeatures $outFile -a="${category1}" -b="${category2}"
   </command>
   <inputs>
     <param format="tabular" name="genomicMatrix" type="data" label="Genomic Matrix"/>
-    <param format="tabular" name="clinicalFeatures" type="data" label="Clinical Matrix"/>
+    <param format="tabular" name="clinicalFeatures" type="data" label="Phenotype Matrix"/>
     <param type="text" name="category1" label="Category 1" optional="false"/>
     <param type="text" name="category2" label="Category 2" optional="false"/>
   </inputs>
@@ -16,8 +15,8 @@
     <requirement type="package" version="1.0" >cancerBrowserStats</requirement>
   </requirements>
   <tests>
-    <param name="genomicMatrix" value="sample.genomic.matrix.txt"/>
-    <param name="clinicalMatrix" value="sample.clinical.matrix.txt"/>
+    <param name="genomicMatrix" value="sample.genomic.matrix.txt" />
+    <param name="clinicalMatrix" value="sample.clinical.matrix.txt" />
     <param name="category1" value="A"/>
     <param name="category2" value="B"/>
     <output name="outFile" value="sample.stats.output.txt"/>