comparison ttest/stats.xml @ 11:cd4c13ae11ce

modify

10:c165b0267f0e

<tool id="ucscCancerBrowserStats" description="Statistical Tests of Difference" name="UCSC Cancer Browser Stats" version="0.0.1">
  <description>Apply statistical tests of difference to the rows in a genomic matrix, where the columns are categorized by a second (clinical) matrix</description>
  <command interpreter="python">
    stats.py  $genomicMatrix $clinicalFeatures $outFile -a="${category1}" -b="${category2}"
  </command>
  <inputs>
    <param format="tabular" name="genomicMatrix" type="data" label="Genomic Matrix"/>
    <param format="tabular" name="clinicalFeatures" type="data" label="Clinical Matrix"/>
    <param type="text" name="category1" label="Category 1" optional="false"/>
    <param type="text" name="category2" label="Category 2" optional="false"/>
  </inputs>
  <outputs>
    <data format="tabular" name="outFile" />
  </outputs>
  <requirements>
    <requirement type="package" version="1.0" >cancerBrowserStats</requirement>
  </requirements>
  <tests>
    <param name="genomicMatrix" value="sample.genomic.matrix.txt"/>
    <param name="clinicalMatrix" value="sample.clinical.matrix.txt"/>
    <param name="category1" value="A"/>
    <param name="category2" value="B"/>
    <output name="outFile" value="sample.stats.output.txt"/>
  </tests>
  <help>

11:cd4c13ae11ce

<tool id="ucscCancerBrowserStats" description="t-tests of Difference in genomic data" name="Difference between categories (t-test)" version="0.0.1">
  <command interpreter="python">
    stats.py  $genomicMatrix $clinicalFeatures $outFile -a="${category1}" -b="${category2}"
  </command>
  <inputs>
    <param format="tabular" name="genomicMatrix" type="data" label="Genomic Matrix"/>
    <param format="tabular" name="clinicalFeatures" type="data" label="Phenotype Matrix"/>
    <param type="text" name="category1" label="Category 1" optional="false"/>
    <param type="text" name="category2" label="Category 2" optional="false"/>
  </inputs>
  <outputs>
    <data format="tabular" name="outFile" />
  </outputs>
  <requirements>
    <requirement type="package" version="1.0" >cancerBrowserStats</requirement>
  </requirements>
  <tests>
    <param name="genomicMatrix" value="sample.genomic.matrix.txt" />
    <param name="clinicalMatrix" value="sample.clinical.matrix.txt" />
    <param name="category1" value="A"/>
    <param name="category2" value="B"/>
    <output name="outFile" value="sample.stats.output.txt"/>
  </tests>
  <help>