comparison startXena.py @ 4:82755b0ee5a5

Removed some debugging hooks

3:47bb7e16dd73

   #xenaBaseDir = os.getenv("__tool_data_path__", "~") + "/shared/xena"
   #xenaBaseDir = args.toolDataPath + "/shared/xena"
   cmdline = "java -jar %s -r %s/files -d %s/xena/db -t %s/tmp" % (xenaJarPath, xenaBaseDir, xenaBaseDir, xenaBaseDir)
   for ii in range(1,len(sys.argv)):
       cmdline = "%s %s" % (cmdline, sys.argv[ii])
   fp = open("/Users/melissacline/tmp/xena.out", "w")
   fp.write("jar path (not paht) %s\n" % (jarPath))
   fp.write("xena base dir %s\n" % (xenaBaseDir))
   fp.write(cmdline)
   run(cmdline)
   fp.close()

if __name__ == '__main__':
    main( )

4:82755b0ee5a5

   #xenaBaseDir = os.getenv("__tool_data_path__", "~") + "/shared/xena"
   #xenaBaseDir = args.toolDataPath + "/shared/xena"
   cmdline = "java -jar %s -r %s/files -d %s/xena/db -t %s/tmp" % (xenaJarPath, xenaBaseDir, xenaBaseDir, xenaBaseDir)
   for ii in range(1,len(sys.argv)):
       cmdline = "%s %s" % (cmdline, sys.argv[ii])
   run(cmdline)

if __name__ == '__main__':
    main( )