diff test-data/1/out.log @ 0:614d53aa795f draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maxbin2/ commit f67400e30b69d2bb47bffed380ac547041b767ac"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/1/out.log	Tue Oct 29 06:44:19 2019 -0400
@@ -0,0 +1,63 @@
+MaxBin 2.2.7
+Input contig: /tmp/tmpkKUAw8/files/2/1/e/dataset_21ee7f6a-b141-4f58-9edf-40cf6498124b.dat
+out header: out
+Thread: 1
+Located reads file [/tmp/tmpkKUAw8/files/e/9/9/dataset_e996d3cb-de7d-4e64-a9f8-75cd61e9f791.dat]
+Running Bowtie2 on reads file [/tmp/tmpkKUAw8/files/e/9/9/dataset_e996d3cb-de7d-4e64-a9f8-75cd61e9f791.dat]...this may take a while...
+Searching against 107 marker genes to find starting seed contigs for [/tmp/tmpkKUAw8/files/2/1/e/dataset_21ee7f6a-b141-4f58-9edf-40cf6498124b.dat]...
+Try harder to dig out marker genes from contigs.
+Done data collection. Running MaxBin...
+Command: /home/berntm/miniconda3/envs/__maxbin2@2.2.7/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp  -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000 
+Minimum contig length set to 1000.
+Reading seed list...
+Looking for seeds in sequences.
+	contig-201_2 [2.848706]
+	contig-201_100 [2.993483]
+Get 2 seeds.
+
+Start EM process.
+Iteration 1
+Iteration 2
+Iteration 3
+Iteration 4
+Iteration 5
+Iteration 6
+Iteration 7
+Iteration 8
+Iteration 9
+Iteration 10
+Iteration 11
+Iteration 12
+Iteration 13
+Iteration 14
+
+EM finishes successfully.
+
+Classifying sequences based on the EM result.
+Minimum probability for binning: 0.50
+Ignoring 0 bins without any sequences.
+Number of unclassified sequences: 0 (0.00%)
+Elapsed time:  0 days 00:00:01
+
+Deleting intermediate files.
+
+
+========== Job finished ==========
+Yielded 2 bins for contig (scaffold) file /tmp/tmpkKUAw8/files/2/1/e/dataset_21ee7f6a-b141-4f58-9edf-40cf6498124b.dat
+
+Here are the output files for this run.
+Please refer to the README file for further details.
+
+Summary file: out.summary
+Marker counts: out.marker
+Marker genes for each bin: out.marker_of_each_gene.tar.gz
+Bin files: out.001.fasta - out.002.fasta
+Unbinned sequences: out.noclass
+Marker plot: out.marker.pdf
+
+Store abundance information of reads file [/tmp/tmpkKUAw8/files/e/9/9/dataset_e996d3cb-de7d-4e64-a9f8-75cd61e9f791.dat] in [out.abund1].
+
+
+========== Elapsed Time ==========
+0 hours 0 minutes and 6 seconds.
+