Mercurial > repos > matthias > stacks2_ustacks
comparison test-data/gstacks/gstacks.log @ 6:742c94cfb8cf draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f507c4eaca0fe04e730d7c3bbb9e9d2488239a9f
| author | matthias |
|---|---|
| date | Thu, 20 Jun 2019 08:10:32 -0400 |
| parents | ccbb048a4178 |
| children |
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| 5:ccbb048a4178 | 6:742c94cfb8cf |
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| 1 gstacks v2.3b, executed 2019-02-22 12:51:51 | 1 gstacks v2.4, executed 2019-06-18 10:34:45 (zlib-1.2.11) |
| 2 gstacks -P bam_inputs -M /tmp/tmpZcvUSM/files/000/dataset_3.dat -O stacks_outputs -t 1 --model marukilow --var-alpha 0.01 --gt-alpha 0.05 | 2 gstacks -P stacks_outputs -M denovo_map/popmap_cstacks.tsv |
| 3 Locus/sample distributions will be written to 'stacks_outputs/gstacks.log.distribs'. | 3 Locus/sample distributions will be written to 'stacks_outputs/gstacks.log.distribs'. |
| 4 | 4 |
| 5 Configuration for this run: | 5 Configuration for this run: |
| 6 Input mode: denovo | 6 Input mode: denovo |
| 7 Population map: '/tmp/tmpZcvUSM/files/000/dataset_3.dat' | 7 Population map: 'denovo_map/popmap_cstacks.tsv' |
| 8 Input files: 2, e.g. 'bam_inputs/PopA_01.matches.bam' | 8 Input files: 2, e.g. 'stacks_outputs/PopA_01.matches.bam' |
| 9 Output to: 'stacks_outputs/' | 9 Output to: 'stacks_outputs/' |
| 10 Model: marukilow (var_alpha: 0.01, gt_alpha: 0.05) | 10 Model: marukilow (var_alpha: 0.01, gt_alpha: 0.05) |
| 11 | 11 |
| 12 Reading BAM headers... | 12 Reading BAM headers... |
| 13 Processing all loci... | 13 Processing all loci... |