Mercurial > repos > matthias > stacks2_tsv2bam
comparison test-data/populations/populations.snps.vcf @ 0:99d0b19ef534 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
| author | matthias |
|---|---|
| date | Thu, 29 Nov 2018 11:48:13 -0500 |
| parents | |
| children | 60c1c4d7d2c1 |
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| -1:000000000000 | 0:99d0b19ef534 |
|---|---|
| 1 ##fileformat=VCFv4.2 | |
| 2 ##fileDate=20181128 | |
| 3 ##source="Stacks v2.2" | |
| 4 ##INFO=<ID=AD,Number=R,Type=Integer,Description="Total Depth for Each Allele"> | |
| 5 ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency"> | |
| 6 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> | |
| 7 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data"> | |
| 8 ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allele Depth"> | |
| 9 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> | |
| 10 ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality"> | |
| 11 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood"> | |
| 12 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> | |
| 13 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
| 14 ##INFO=<ID=loc_strand,Number=1,Type=Character,Description="Genomic strand the corresponding Stacks locus aligns on"> | |
| 15 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PopA_01 PopA_02 | |
| 16 1 34 . A C . PASS NS=2;AF=0.500 GT:DP:AD:GQ:GL 0/1:18:9,9:40:-20.07,0.00,-20.07 0/1:12:6,6:40:-13.54,-0.00,-13.54 | |
| 17 1 89 . A C . PASS NS=2;AF=0.500 GT:DP:AD:GQ:GL 0/1:18:9,9:40:-20.07,0.00,-20.07 0/1:12:6,6:40:-13.54,-0.00,-13.54 |