diff test-data/refmap/populations.log.distribs @ 5:aef37afe214f draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 4e87a14a5479800df9675c1cbcdbe1b11f63653b-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/refmap/populations.log.distribs	Wed Feb 27 09:58:12 2019 -0500
@@ -0,0 +1,59 @@
+# Note: Individual distributions can be extracted using the `stacks-dist-extract` utility.
+#       e.g. `stacks-dist-extract populations.log.distribs dist_name`
+
+BEGIN batch_progress
+Contig_95: analyzed 1 loci; filtered 0 loci; 1 loci seen.
+    94 genomic sites, of which 0 were covered by multiple loci (0.0%).
+Contig_1381: analyzed 2 loci; filtered 0 loci; 2 loci seen.
+    94 genomic sites, of which 94 were covered by multiple loci (100.0%).
+Contig_2103: analyzed 2 loci; filtered 0 loci; 2 loci seen.
+    94 genomic sites, of which 94 were covered by multiple loci (100.0%).
+Contig_2644: analyzed 2 loci; filtered 0 loci; 2 loci seen.
+    94 genomic sites, of which 94 were covered by multiple loci (100.0%).
+Contig_3015: analyzed 2 loci; filtered 0 loci; 2 loci seen.
+    94 genomic sites, of which 94 were covered by multiple loci (100.0%).
+Contig_3253: analyzed 2 loci; filtered 0 loci; 2 loci seen.
+    94 genomic sites, of which 94 were covered by multiple loci (100.0%).
+Contig_3569: analyzed 2 loci; filtered 0 loci; 2 loci seen.
+    94 genomic sites, of which 94 were covered by multiple loci (100.0%).
+END batch_progress
+
+BEGIN samples_per_loc_prefilters
+# Distribution of valid samples matched to a catalog locus prior to filtering.
+n_samples	n_loci
+0	13
+END samples_per_loc_prefilters
+
+BEGIN missing_samples_per_loc_prefilters
+
+# Distribution of missing samples for each catalog locus prior to filtering.
+# Absent samples at locus	Count
+2	13
+END missing_samples_per_loc_prefilters
+
+BEGIN snps_per_loc_prefilters
+# Distribution of the number of SNPs per catalog locus prior to filtering.
+n_snps	n_loci
+0	10
+2	3
+END snps_per_loc_prefilters
+
+BEGIN samples_per_loc_postfilters
+# Distribution of valid samples matched to a catalog locus after filtering.
+n_samples	n_loci
+0	13
+END samples_per_loc_postfilters
+
+BEGIN missing_samples_per_loc_postfilters
+
+# Distribution of missing samples for each catalog locus after filtering.
+# Absent samples at locus	Count
+2	13
+END missing_samples_per_loc_postfilters
+
+BEGIN snps_per_loc_postfilters
+# Distribution of the number of SNPs per catalog locus (after filtering).
+n_snps	n_loci
+0	10
+2	3
+END snps_per_loc_postfilters