diff stacks_sstacks.xml @ 4:176f2a0c6683 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c42d129928cfd153ba7a922368c8e76e79b242b2

--- a/stacks_sstacks.xml	Tue Dec 18 13:00:04 2018 -0500
+++ b/stacks_sstacks.xml	Fri Jan 04 03:35:36 2019 -0500
@@ -70,8 +70,8 @@
     ]]></command>
 
     <inputs>
-        <param name="input_cat" format="tabular,txt" type="data_collection" collection_type="list" label="Catalog files" help="output from a previous Stacks pipeline steps e.g. denovo_map, refmap or cstacks" />
-        <param name="input_tags" format="tabular,txt" type="data_collection" collection_type="list" label="Samples stacks" help="output from previous Stacks pipeline steps e.g. denovo_map, refmap or ustacks/pstacks" />
+	<expand macro="input_cat_macro"/>
+	<expand macro="input_tags_macro"/>
 
         <param name="popmap" type="data" format="tabular,txt" label="Population map" help="If set, matching will be done only for samples listed in this file" optional="true" argument="-M" />
         <param argument="-x" type="boolean" checked="false" truevalue="-x" falsevalue="" label="don't verify haplotype of matching locus" />
@@ -163,13 +163,13 @@
 
 **What it does**
 
-Sets of stacks constructed by the ustacks or pstacks programs can be searched against a catalog produced by cstacks. In the case of a genetic map, stacks from the progeny would be matched against the catalog to determine which progeny contain which parental alleles.
+Sets of stacks constructed by ustacks can be searched against a catalog produced by cstacks. In the case of a genetic map, stacks from the progeny would be matched against the catalog to determine which progeny contain which parental alleles.
 
 --------
 
 **Input files**
 
-Output from denovo_map, refmap or cstacks/ustacks/pstacks
+Output from denovo_map, refmap or cstacks/ustack
 
 **Output files**