Mercurial > repos > matthias > stacks2_shortreads

view test-data/populations/populations.snps.vcf @ 0:061c9e133d1e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
author matthias
date Thu, 29 Nov 2018 11:43:50 -0500
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children c23695f62bdd
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##fileformat=VCFv4.2
##fileDate=20181128
##source="Stacks v2.2"
##INFO=<ID=AD,Number=R,Type=Integer,Description="Total Depth for Each Allele">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allele Depth">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##INFO=<ID=loc_strand,Number=1,Type=Character,Description="Genomic strand the corresponding Stacks locus aligns on">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	PopA_01	PopA_02
1	34	.	A	C	.	PASS	NS=2;AF=0.500	GT:DP:AD:GQ:GL	0/1:18:9,9:40:-20.07,0.00,-20.07	0/1:12:6,6:40:-13.54,-0.00,-13.54
1	89	.	A	C	.	PASS	NS=2;AF=0.500	GT:DP:AD:GQ:GL	0/1:18:9,9:40:-20.07,0.00,-20.07	0/1:12:6,6:40:-13.54,-0.00,-13.54