Mercurial > repos > matthias > stacks2_shortreads
diff test-data/gstacks/gstacks.log @ 5:56d3555cf5f7 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f507c4eaca0fe04e730d7c3bbb9e9d2488239a9f
| author | matthias |
|---|---|
| date | Thu, 20 Jun 2019 08:13:18 -0400 |
| parents | c23695f62bdd |
| children |
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--- a/test-data/gstacks/gstacks.log Wed Feb 27 09:52:16 2019 -0500 +++ b/test-data/gstacks/gstacks.log Thu Jun 20 08:13:18 2019 -0400 @@ -1,11 +1,11 @@ -gstacks v2.3b, executed 2019-02-22 12:51:51 -gstacks -P bam_inputs -M /tmp/tmpZcvUSM/files/000/dataset_3.dat -O stacks_outputs -t 1 --model marukilow --var-alpha 0.01 --gt-alpha 0.05 +gstacks v2.4, executed 2019-06-18 10:34:45 (zlib-1.2.11) +gstacks -P stacks_outputs -M denovo_map/popmap_cstacks.tsv Locus/sample distributions will be written to 'stacks_outputs/gstacks.log.distribs'. Configuration for this run: Input mode: denovo - Population map: '/tmp/tmpZcvUSM/files/000/dataset_3.dat' - Input files: 2, e.g. 'bam_inputs/PopA_01.matches.bam' + Population map: 'denovo_map/popmap_cstacks.tsv' + Input files: 2, e.g. 'stacks_outputs/PopA_01.matches.bam' Output to: 'stacks_outputs/' Model: marukilow (var_alpha: 0.01, gt_alpha: 0.05)