Mercurial > repos > matthias > stacks2_refmap
diff test-data/tmp/stacks_outputs/tsv2bam.log @ 0:bd0bf17caa4d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
| author | matthias |
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| date | Thu, 29 Nov 2018 11:38:05 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/tmp/stacks_outputs/tsv2bam.log Thu Nov 29 11:38:05 2018 -0500 @@ -0,0 +1,17 @@ +tsv2bam v2.2, executed 2018-11-28 13:45:54 +/home/berntm/miniconda3/envs/__stacks@2.2/bin/tsv2bam -P stacks_outputs -M /tmp/tmpSlCHrR/files/000/dataset_3.dat -t 1 -R stacks_inputs/ +Configuration for this run: + Stacks directory: 'stacks_outputs/' + Population map: '/tmp/tmpSlCHrR/files/000/dataset_3.dat' + Num. samples: 2 + Paired-end reads directory: 'stacks_inputs/' + +Paired-end reads files found, e.g. 'stacks_inputs/PopA_01.2.fq'. +Loading the catalog... +Processing sample 'PopA_01'... +Processing sample 'PopA_02'... + +Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; found a paired-end read for 66 (100.0%) of the assembled forward reads; wrote 132 records. +Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; found a paired-end read for 60 (100.0%) of the assembled forward reads; wrote 120 records. + +tsv2bam is done.