Mercurial > repos > matthias > stacks2_refmap
diff test-data/stacks_outputs/tsv2bam.log @ 6:60687cc87548 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f507c4eaca0fe04e730d7c3bbb9e9d2488239a9f
| author | matthias |
|---|---|
| date | Thu, 20 Jun 2019 08:11:14 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/stacks_outputs/tsv2bam.log Thu Jun 20 08:11:14 2019 -0400 @@ -0,0 +1,17 @@ +tsv2bam v2.4, executed 2019-06-18 10:34:45 (zlib-1.2.11) +tsv2bam -P stacks_outputs -M denovo_map/popmap_cstacks.tsv -R demultiplexed/ +Configuration for this run: + Stacks directory: 'stacks_outputs/' + Population map: 'denovo_map/popmap_cstacks.tsv' + Num. samples: 2 + Paired-end reads directory: 'demultiplexed/' + +Paired-end reads files found, e.g. 'demultiplexed/PopA_01.2.fq'. +Loading the catalog... +Processing sample 'PopA_01'... +Processing sample 'PopA_02'... + +Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; found a paired-end read for 66 (100.0%) of the assembled forward reads; wrote 132 records. +Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; found a paired-end read for 60 (100.0%) of the assembled forward reads; wrote 120 records. + +tsv2bam is done.