Mercurial > repos > matthias > stacks2_refmap

diff stacks_refmap.xml @ 2:39ebc7633942 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 8b047549e9e8791a5ca9424b1ef391e8980aba79-dirty
author matthias
date Fri, 30 Nov 2018 07:30:43 -0500
parents a8d93e132d3b
children 93fb82c0fc94
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--- a/stacks_refmap.xml	Thu Nov 29 12:16:18 2018 -0500
+++ b/stacks_refmap.xml	Fri Nov 30 07:30:43 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="stacks2_refmap" name="Stacks2: reference map" version="@WRAPPER_VERSION@">
+<tool id="stacks2_refmap" name="Stacks2: reference map" version="@STACKS_VERSION@+galaxy@WRAPPER_VERSION@">
     <description>the Stacks pipeline with a reference genome (ref_map.pl)</description>
     <macros>
         <import>macros.xml</import>
@@ -58,8 +58,7 @@
             <!-- TODO test for outputs -->
         </test>
         <test>
-            <param name="input_type|input_type_selector" value="manual"/>
-            <param name="input_type|input_bam" value="refmap/PopA_01.bam,refmap/PopA_02.bam"/>
+            <param name="input_bam" value="refmap/PopA_01.bam,refmap/PopA_02.bam"/>
             <param name="popmap" ftype="tabular" value="denovo_map/popmap_cstacks.tsv" />
             <param name="paired_select" value="--unpaired"/>
             <param name="model_options|var_alpha" value="0.1" />