view test-data/gstacks/gstacks.log.distribs @ 0:a4e62d5c5101 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty

# Note: Individual distributions can be extracted using the `stacks-dist-extract` utility.
#       e.g. `stacks-dist-extract gstacks.log.distribs dist_name`

BEGIN effective_coverages_per_sample
# For mean_cov_ns, the coverage at each locus is weighted by the number of
# samples present at that locus (i.e. coverage at shared loci counts more).
sample	n_loci	n_used_fw_reads	mean_cov	mean_cov_ns
PopA_01	3	66	22.000	22.000
PopA_02	3	60	20.000	20.000
END effective_coverages_per_sample

BEGIN phasing_rates_per_sample
sample	n_gts	n_multisnp_hets	n_phased	misphasing_rate
PopA_01	1	1	1	0.000
PopA_02	1	1	1	0.000
END phasing_rates_per_sample

BEGIN clockings
Num. threads: 1
Parallel time: 0.0
Average thread time spent:
     0.0  reading (18.1%)
     0.0  processing (74.5%)
             0.0  counting nucleotides (6.9%)
             0.0  genotyping (5.8%)
             0.0  haplotyping (1.6%)
             0.0  computing consensus (6.6%)
             0.0  building_vcf (48.0%)
     0.0  writing_fa (3.4%)
     0.0  writing_vcf (2.0%)
     0.0  clocking (0.6%)
Total time spent writing vcf: 0.0 (1.9%)
VCFwrite block size: mean=1.0(n=3); max=1
END clockings