diff test-data/sstacks/sstacks.log @ 0:ce90584be117 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/sstacks/sstacks.log	Thu Nov 29 11:52:48 2018 -0500
@@ -0,0 +1,48 @@
+Searching for matches by sequence identity...
+  Parsing stacks_inputs/catalog.tags.tsv
+  Parsing stacks_inputs/catalog.snps.tsv
+  Parsing stacks_inputs/catalog.alleles.tsv
+Populating kmer dictionary for exact matches...done.
+Populating kmer dictionary for gapped alignments...done.
+
+Processing sample 'stacks_inputs/PopA_01' [1 of 2]
+  Parsing stacks_inputs/PopA_01.tags.tsv
+  Parsing stacks_inputs/PopA_01.snps.tsv
+  Parsing stacks_inputs/PopA_01.alleles.tsv
+Searching for sequence matches...
+3 sample loci compared against the catalog containing 3 loci.
+  3 matching loci, 0 contained no verified haplotypes.
+  0 loci matched more than one catalog locus and were excluded.
+  0 loci contained SNPs unaccounted for in the catalog and were excluded.
+  4 total haplotypes examined from matching loci, 4 verified.
+Searching for gapped alignments...
+Out of 3 query loci, 0 gapped alignments attempted.
+  0 loci matched one catalog locus; 0 total haplotypes examined, 0 verified.
+  0 loci matched no catalog locus;
+    0 loci matched more than one catalog locus and were excluded.
+    0 loci contained SNPs unaccounted for in the catalog and were excluded.
+    0 loci had no verified haplotypes.
+    0 loci had inconsistent alignments to a catalog locus and were excluded.
+Outputing to file stacks_outputs/PopA_01.matches.tsv
+
+Processing sample 'stacks_inputs/PopA_02' [2 of 2]
+  Parsing stacks_inputs/PopA_02.tags.tsv
+  Parsing stacks_inputs/PopA_02.snps.tsv
+  Parsing stacks_inputs/PopA_02.alleles.tsv
+Searching for sequence matches...
+3 sample loci compared against the catalog containing 3 loci.
+  3 matching loci, 0 contained no verified haplotypes.
+  0 loci matched more than one catalog locus and were excluded.
+  0 loci contained SNPs unaccounted for in the catalog and were excluded.
+  4 total haplotypes examined from matching loci, 4 verified.
+Searching for gapped alignments...
+Out of 3 query loci, 0 gapped alignments attempted.
+  0 loci matched one catalog locus; 0 total haplotypes examined, 0 verified.
+  0 loci matched no catalog locus;
+    0 loci matched more than one catalog locus and were excluded.
+    0 loci contained SNPs unaccounted for in the catalog and were excluded.
+    0 loci had no verified haplotypes.
+    0 loci had inconsistent alignments to a catalog locus and were excluded.
+Outputing to file stacks_outputs/PopA_02.matches.tsv
+
+sstacks is done.