Mercurial > repos > matthias > stacks2_gstacks
comparison test-data/tmp/stacks_outputs/tsv2bam.log @ 0:ce90584be117 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
| author | matthias |
|---|---|
| date | Thu, 29 Nov 2018 11:52:48 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:ce90584be117 |
|---|---|
| 1 tsv2bam v2.2, executed 2018-11-28 13:45:54 | |
| 2 /home/berntm/miniconda3/envs/__stacks@2.2/bin/tsv2bam -P stacks_outputs -M /tmp/tmpSlCHrR/files/000/dataset_3.dat -t 1 -R stacks_inputs/ | |
| 3 Configuration for this run: | |
| 4 Stacks directory: 'stacks_outputs/' | |
| 5 Population map: '/tmp/tmpSlCHrR/files/000/dataset_3.dat' | |
| 6 Num. samples: 2 | |
| 7 Paired-end reads directory: 'stacks_inputs/' | |
| 8 | |
| 9 Paired-end reads files found, e.g. 'stacks_inputs/PopA_01.2.fq'. | |
| 10 Loading the catalog... | |
| 11 Processing sample 'PopA_01'... | |
| 12 Processing sample 'PopA_02'... | |
| 13 | |
| 14 Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; found a paired-end read for 66 (100.0%) of the assembled forward reads; wrote 132 records. | |
| 15 Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; found a paired-end read for 60 (100.0%) of the assembled forward reads; wrote 120 records. | |
| 16 | |
| 17 tsv2bam is done. |