comparison test-data/gstacks/gstacks.log.distribs @ 5:aa645d419016 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f507c4eaca0fe04e730d7c3bbb9e9d2488239a9f

4:285e1f85c11a

BEGIN clockings
Num. threads: 1
Parallel time: 0.0
Average thread time spent:
     0.0  reading (2.9%)
     0.0  processing (95.7%)
             0.0 pre-alignments block (69.1%)
             0.0  reformatting fw-reads (0.2%)
             0.0  assembling (21.2%)
             0.0  initializing alignments (4.4%)
             0.0  aligning (41.3%)
             0.0  merging read pairs (2.0%)
             0.0 post-alignments block (25.2%)
             0.0  filtering reads (0.0%)
             0.0  counting nucleotides (4.0%)
             0.0  genotyping (1.9%)
             0.0  haplotyping (1.2%)
             0.0  computing consensus (0.1%)
             0.0  building_fa (0.1%)
             0.0  building_vcf (17.8%)
     0.0  writing_fa (0.1%)
     0.0  writing_vcf (1.0%)
     0.0  clocking (0.2%)
Total time spent writing vcf: 0.0 (1.0%)
VCFwrite block size: mean=1.0(n=3); max=1
END clockings

5:aa645d419016

BEGIN clockings
Num. threads: 1
Parallel time: 0.0
Average thread time spent:
     0.0  reading (3.1%)
     0.0  processing (95.2%)
             0.0 pre-alignments block (72.2%)
             0.0  reformatting fw-reads (0.1%)
             0.0  assembling (22.2%)
             0.0  initializing alignments (5.4%)
             0.0  aligning (42.9%)
             0.0  merging read pairs (1.5%)
             0.0 post-alignments block (21.2%)
             0.0  filtering reads (0.0%)
             0.0  counting nucleotides (3.5%)
             0.0  genotyping (1.9%)
             0.0  haplotyping (1.0%)
             0.0  computing consensus (0.1%)
             0.0  building_fa (0.1%)
             0.0  building_vcf (14.6%)
     0.0  writing_fa (0.1%)
     0.0  writing_vcf (1.3%)
     0.0  clocking (0.2%)
Total time spent writing vcf: 0.0 (1.3%)
VCFwrite block size: mean=1.0(n=3); max=1
END clockings