Mercurial > repos > matthias > stacks2_gstacks

comparison test-data/shortreads/process_shortreads.out @ 2:4301ded2ea50 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 9c41b2599125298b1a4d9ffb2511cdc87ff79a73
author matthias
date Tue, 18 Dec 2018 12:58:51 -0500
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1:192f1d5f301e 2:4301ded2ea50
1 process_shortreads v2.2, executed 2018-12-03 21:27:19
2 process_shortreads -p stacks_inputs/ -i fastq -b /tmp/tmpiZT6X4/files/000/dataset_2.dat --inline_null -o stacks_outputs
3 File Retained Reads Low Quality Ambiguous Barcodes Trimmed Reads Orphaned paired-end reads Total
4 R1.fastq 7000 0 0 0 0 7000
5
6 Total Sequences 7000
7 Ambiguous Barcodes 0
8 Low Quality 0
9 Trimmed Reads 0
10 Orphaned Paired-ends 0
11 Retained Reads 7000
12
13 Barcode Filename Total Retained
14 ATGGGG PopA_01 160 160
15 GGGTAA PopA_02 146 146
16 AGGAAA PopA_03 224 224
17 TTTAAG PopA_04 168 168
18 GGTGTG PopA_05 220 220
19 TGATGT PopA_06 214 214
20 GGTTGT PopA_07 182 182
21 ATAAGT PopA_08 232 232
22 AAGATA PopA_09 182 182
23 TGTGAG PopA_10 168 168
24 ATAGTT PopA_11 200 200
25 GGAAGG PopA_12 178 178
26 TTTGTG PopA_13 190 190
27 TTAAAT PopA_14 166 166
28 AATAAG PopA_15 152 152
29 AAGAGG PopA_16 174 174
30 TAGTGT PopA_17 242 242
31 TGGAAG PopA_18 148 148
32 GGGTTG PopA_19 110 110
33 CATCAT PopA_20 178 178
34 GGAGAG PopB_20 210 210
35 GTTTTA PopB_01 136 136
36 TGATAA PopB_02 166 166
37 GTTGAT PopB_03 148 148
38 AGATTA PopB_04 180 180
39 GTATAG PopB_05 136 136
40 TTGGGA PopB_06 166 166
41 ATATAT PopB_07 242 242
42 GATGAG PopB_08 208 208
43 GGGAAT PopB_09 198 198
44 AGTAAT PopB_10 164 164
45 GGGATA PopB_11 146 146
46 GAGAAG PopB_12 162 162
47 AGTAGA PopB_13 204 204
48 AAGGAT PopB_14 180 180
49 AGGGTA PopB_15 134 134
50 TGTTTT PopB_16 138 138
51 ATGATG PopB_17 142 142
52 GAGTTA PopB_18 160 160
53 ATGTAG PopB_19 146 146
54
55 Sequences not recorded
56 Barcode Total