diff test-data/populations/populations.snps.vcf @ 0:e5e5617c064a draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/populations/populations.snps.vcf	Thu Nov 29 11:50:28 2018 -0500
@@ -0,0 +1,17 @@
+##fileformat=VCFv4.2
+##fileDate=20181128
+##source="Stacks v2.2"
+##INFO=<ID=AD,Number=R,Type=Integer,Description="Total Depth for Each Allele">
+##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
+##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
+##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allele Depth">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
+##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality">
+##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##INFO=<ID=loc_strand,Number=1,Type=Character,Description="Genomic strand the corresponding Stacks locus aligns on">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	PopA_01	PopA_02
+1	34	.	A	C	.	PASS	NS=2;AF=0.500	GT:DP:AD:GQ:GL	0/1:18:9,9:40:-20.07,0.00,-20.07	0/1:12:6,6:40:-13.54,-0.00,-13.54
+1	89	.	A	C	.	PASS	NS=2;AF=0.500	GT:DP:AD:GQ:GL	0/1:18:9,9:40:-20.07,0.00,-20.07	0/1:12:6,6:40:-13.54,-0.00,-13.54