diff test-data/tsv2bam/tsv2bam.log @ 5:3680074758c5 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f507c4eaca0fe04e730d7c3bbb9e9d2488239a9f

--- a/test-data/tsv2bam/tsv2bam.log	Wed Feb 27 09:55:08 2019 -0500
+++ b/test-data/tsv2bam/tsv2bam.log	Thu Jun 20 08:14:41 2019 -0400
@@ -1,14 +1,17 @@
-tsv2bam v2.2, executed 2018-11-27 13:20:44
-tsv2bam -P stacks_inputs -s PopA_01 -s PopA_02 -t 1
+tsv2bam v2.4, executed 2019-06-17 21:22:16 (zlib-1.2.11)
+tsv2bam -P stacks_outputs -M denovo_map/popmap_cstacks.tsv -R demultiplexed/
 Configuration for this run:
-  Stacks directory: 'stacks_inputs/'
+  Stacks directory: 'stacks_outputs/'
+  Population map: 'denovo_map/popmap_cstacks.tsv'
   Num. samples: 2
+  Paired-end reads directory: 'demultiplexed/'
 
+Paired-end reads files found, e.g. 'demultiplexed/PopA_01.2.fq'.
 Loading the catalog...
 Processing sample 'PopA_01'...
 Processing sample 'PopA_02'...
 
-Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; wrote 66 records.
-Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; wrote 60 records.
+Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; found a paired-end read for 66 (100.0%) of the assembled forward reads; wrote 132 records.
+Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; found a paired-end read for 60 (100.0%) of the assembled forward reads; wrote 120 records.
 
 tsv2bam is done.