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view test-data/tmp/stacks_outputs/tsv2bam.log @ 3:61afc5a3cd8e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c42d129928cfd153ba7a922368c8e76e79b242b2
author matthias
date Fri, 04 Jan 2019 03:31:18 -0500
parents e4b371f8a47a
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tsv2bam v2.2, executed 2018-11-28 13:45:54
/home/berntm/miniconda3/envs/__stacks@2.2/bin/tsv2bam -P stacks_outputs -M /tmp/tmpSlCHrR/files/000/dataset_3.dat -t 1 -R stacks_inputs/
Configuration for this run:
  Stacks directory: 'stacks_outputs/'
  Population map: '/tmp/tmpSlCHrR/files/000/dataset_3.dat'
  Num. samples: 2
  Paired-end reads directory: 'stacks_inputs/'

Paired-end reads files found, e.g. 'stacks_inputs/PopA_01.2.fq'.
Loading the catalog...
Processing sample 'PopA_01'...
Processing sample 'PopA_02'...

Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; found a paired-end read for 66 (100.0%) of the assembled forward reads; wrote 132 records.
Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; found a paired-end read for 60 (100.0%) of the assembled forward reads; wrote 120 records.

tsv2bam is done.