Mercurial > repos > matthias > stacks2_cstacks
diff test-data/gstacks/gstacks.log.distribs @ 5:687f84474d33 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f507c4eaca0fe04e730d7c3bbb9e9d2488239a9f
author | matthias |
---|---|
date | Thu, 20 Jun 2019 08:12:36 -0400 |
parents | 924e7889aa05 |
children |
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--- a/test-data/gstacks/gstacks.log.distribs Wed Feb 27 09:51:06 2019 -0500 +++ b/test-data/gstacks/gstacks.log.distribs Thu Jun 20 08:12:36 2019 -0400 @@ -19,25 +19,25 @@ Num. threads: 1 Parallel time: 0.0 Average thread time spent: - 0.0 reading (2.9%) - 0.0 processing (95.7%) - 0.0 pre-alignments block (69.1%) - 0.0 reformatting fw-reads (0.2%) - 0.0 assembling (21.2%) - 0.0 initializing alignments (4.4%) - 0.0 aligning (41.3%) - 0.0 merging read pairs (2.0%) - 0.0 post-alignments block (25.2%) + 0.0 reading (3.1%) + 0.0 processing (95.2%) + 0.0 pre-alignments block (72.2%) + 0.0 reformatting fw-reads (0.1%) + 0.0 assembling (22.2%) + 0.0 initializing alignments (5.4%) + 0.0 aligning (42.9%) + 0.0 merging read pairs (1.5%) + 0.0 post-alignments block (21.2%) 0.0 filtering reads (0.0%) - 0.0 counting nucleotides (4.0%) + 0.0 counting nucleotides (3.5%) 0.0 genotyping (1.9%) - 0.0 haplotyping (1.2%) + 0.0 haplotyping (1.0%) 0.0 computing consensus (0.1%) 0.0 building_fa (0.1%) - 0.0 building_vcf (17.8%) + 0.0 building_vcf (14.6%) 0.0 writing_fa (0.1%) - 0.0 writing_vcf (1.0%) + 0.0 writing_vcf (1.3%) 0.0 clocking (0.2%) -Total time spent writing vcf: 0.0 (1.0%) +Total time spent writing vcf: 0.0 (1.3%) VCFwrite block size: mean=1.0(n=3); max=1 END clockings