Mercurial > repos > matthias > stacks2_cstacks

annotate test-data/populations/populations.log.distribs @ 6:c8f5a29f720c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 82e7263f3e57a29362d981e36b82b82063f12ac3
author matthias
date Tue, 25 Jun 2019 10:57:24 -0400
parents 687f84474d33
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e4b371f8a47a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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1 # Note: Individual distributions can be extracted using the `stacks-dist-extract` utility.
e4b371f8a47a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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2 # e.g. `stacks-dist-extract populations.log.distribs dist_name`
e4b371f8a47a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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e4b371f8a47a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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4 BEGIN batch_progress
e4b371f8a47a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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5 Batch 1: analyzed 3 loci; filtered 0 loci; 3 loci seen.
e4b371f8a47a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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6 END batch_progress
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8 BEGIN samples_per_loc_prefilters
e4b371f8a47a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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9 # Distribution of valid samples matched to a catalog locus prior to filtering.
e4b371f8a47a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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10 n_samples n_loci
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12 END samples_per_loc_prefilters
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14 BEGIN missing_samples_per_loc_prefilters
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15 # Distribution of missing samples for each catalog locus prior to filtering.
e4b371f8a47a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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16 # Absent samples at locus Count
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18 END missing_samples_per_loc_prefilters
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20 BEGIN snps_per_loc_prefilters
e4b371f8a47a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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21 # Distribution of the number of SNPs per catalog locus prior to filtering.
e4b371f8a47a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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22 n_snps n_loci
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24 END snps_per_loc_prefilters
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26 BEGIN samples_per_loc_postfilters
e4b371f8a47a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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27 # Distribution of valid samples matched to a catalog locus after filtering.
e4b371f8a47a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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28 n_samples n_loci
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30 END samples_per_loc_postfilters
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32 BEGIN missing_samples_per_loc_postfilters
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33 # Distribution of missing samples for each catalog locus after filtering.
e4b371f8a47a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 98327d2948ae1ccb5aef5db9ab88605fd74a0de7-dirty
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34 # Absent samples at locus Count
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36 END missing_samples_per_loc_postfilters
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38 BEGIN snps_per_loc_postfilters
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39 # Distribution of the number of SNPs per catalog locus (after filtering).
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40 n_snps n_loci
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42 END snps_per_loc_postfilters