Mercurial > repos > matthias > samtools_view
view samtools_merge/test-data/2.merge.expected.sam @ 0:b6284c02c437 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
| author | matthias |
|---|---|
| date | Fri, 22 Feb 2019 15:43:51 -0500 |
| parents | |
| children |
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@HD VN:1.4 @SQ SN:insert LN:599 @SQ SN:ref1 LN:45 @SQ SN:ref2 LN:40 @SQ SN:ref3 LN:4 @RG ID:fish PG:donkey @RG ID:cow PU:13_&^&&*(:332 @RG PU:*9u8jkjjkjd: ID:colt @RG ID:fish-55424A4 PG:llama @RG ID:cow-3A2CCEF5 PU:13_&^&&*(:332 PG:donkey-4861F4EF @RG PU:*9u8jkjjkjd: ID:colt-6ADB4A65 @RG ID:fish-39E5EF @RG ID:cow-1802EEEC PU:13_&^&&*(:332 @RG PU:*9u8jkjjkjd: ID:colt-7EC68B3F @PG ID:bull PP:donkey @PG ID:donkey @PG ID:moose @PG PP:moose ID:cow @PG ID:llama @PG ID:bull-2B019719 PP:donkey-4861F4EF @PG ID:donkey-4861F4EF @PG ID:bull-60104A41 PP:donkey-2EE20DF8 @PG ID:donkey-2EE20DF8 @CO @CO Do you know? @CO Do you know? @CO Another comment from test_input_1_c r000 99 insert 50 30 10M = 80 30 ATTTAGCTAC AAAAAAAAAA RG:Z:cow PG:Z:bull r000 211 insert 80 30 10M = 50 -30 CCCAATCATT AAAAAAAAAA RG:Z:cow PG:Z:bull r001 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 RG:Z:fish r005 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF r008 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 r002 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 r003 0 ref1 9 30 5H6M * 0 0 AGCTAA * RG:Z:cow r006 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF r007 0 ref1 9 30 5H6M * 0 0 AGCTAA * RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF r009 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 r010 0 ref1 9 30 5H6M * 0 0 AGCTAA * RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 r004 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * RG:Z:colt r007 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF r010 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 r003 16 ref1 29 30 6H5M * 0 0 TAGGC * RG:Z:cow r006 16 ref1 29 30 6H5M * 0 0 TAGGC * RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF r009 16 ref1 29 30 6H5M * 0 0 TAGGC * RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 r001 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * RG:Z:fish r005 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * RG:Z:colt-6ADB4A65 PG:Z:donkey-4861F4EF r008 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * RG:Z:colt-7EC68B3F PG:Z:donkey-2EE20DF8 x1 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * RG:Z:colt PG:Z:bull x7 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 x10 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * RG:Z:cow-1802EEEC PG:Z:bull-60104A41 x2 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? RG:Z:colt PG:Z:bull x8 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 x11 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? RG:Z:cow-1802EEEC PG:Z:bull-60104A41 x3 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? RG:Z:fish PG:Z:bull x9 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 x12 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? RG:Z:cow-1802EEEC PG:Z:bull-60104A41 x4 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? RG:Z:fish PG:Z:bull x10 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 x13 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? RG:Z:cow-1802EEEC PG:Z:bull-60104A41 x5 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? RG:Z:fish PG:Z:bull x11 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 x14 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? RG:Z:cow-1802EEEC PG:Z:bull-60104A41 x6 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? RG:Z:cow x12 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? RG:Z:cow-3A2CCEF5 PG:Z:bull-2B019719 x15 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? RG:Z:cow-1802EEEC PG:Z:bull-60104A41 u1 4 * 0 30 23M * 0 0 TAATTAAGTCTACAGAAAAAAAA ??????????????????????? u2 4 * 0 30 * * 0 0 TAATTAAGTCTACAGAAAAAAAA ???????????????????????