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diff samtools_fixmate/test-data/7_two_read_mapped.sam @ 0:b6284c02c437 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
author matthias
date Fri, 22 Feb 2019 15:43:51 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fixmate/test-data/7_two_read_mapped.sam	Fri Feb 22 15:43:51 2019 -0500
@@ -0,0 +1,22 @@
+@HD	VN:1.4	SO:queryname
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+of1	99	ref1	10	30	23M	=	8	2	AAGTCGGCAGCGTCAGATGTGTA	???????????????????????
+of1	147	ref1	8	30	23M	=	10	-2	CTGTCTCTTATACACATCTCCTT	???????????????????????
+r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*
+r001	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100
+r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10
+r003	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*
+r003	16	ref1	29	30	6H5M	*	0	0	TAGGC	*
+r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*
+r007	8	ref1	9	30	5H6M	*	0	0	AGCTAA	*
+r007	4	ref1	9	30	*	*	0	0	GGGGGG	*
+r008	12	ref1	9	30	5H6M	*	0	0	AGCTAA	*
+r008	4	ref1	9	30	*	*	0	0	GGGGGG	*
+uu1	4	*	0	30	*	*	0	0	TAATTGGGTCTTCAGAGCACCTA	???????????????????????
+x1	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*
+x2	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????
+x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????
+x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????
+x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????
+x6	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????