Mercurial > repos > matthias > samtools_split
diff samtools_fixmate/test-data/7_two_read_mapped.sam @ 0:6c9caf40b95e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
| author | matthias |
|---|---|
| date | Fri, 22 Feb 2019 15:42:15 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/samtools_fixmate/test-data/7_two_read_mapped.sam Fri Feb 22 15:42:15 2019 -0500 @@ -0,0 +1,22 @@ +@HD VN:1.4 SO:queryname +@SQ SN:ref1 LN:45 +@SQ SN:ref2 LN:40 +of1 99 ref1 10 30 23M = 8 2 AAGTCGGCAGCGTCAGATGTGTA ??????????????????????? +of1 147 ref1 8 30 23M = 10 -2 CTGTCTCTTATACACATCTCCTT ??????????????????????? +r001 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * +r001 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 +r002 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 +r003 0 ref1 9 30 5H6M * 0 0 AGCTAA * +r003 16 ref1 29 30 6H5M * 0 0 TAGGC * +r004 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * +r007 8 ref1 9 30 5H6M * 0 0 AGCTAA * +r007 4 ref1 9 30 * * 0 0 GGGGGG * +r008 12 ref1 9 30 5H6M * 0 0 AGCTAA * +r008 4 ref1 9 30 * * 0 0 GGGGGG * +uu1 4 * 0 30 * * 0 0 TAATTGGGTCTTCAGAGCACCTA ??????????????????????? +x1 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * +x2 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? +x3 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? +x4 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? +x5 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? +x6 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ???????????????????????