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changeset 0:96894a83999c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
author matthias
date Fri, 22 Feb 2019 15:37:27 -0500
parents
children 7d91489f0912
files bam_to_cram/macros.xml bam_to_cram/test-data/sam_to_bam_out2.bam bam_to_cram/test-data/test.bam bam_to_cram/test-data/test.bed bam_to_cram/test-data/test.cram bam_to_cram/test-data/test.fa bam_to_cram/test-data/test.sam bam_to_cram/test-data/test2.cram bam_to_cram/tool-data/fasta_indexes.loc.sample bam_to_cram/tool_data_table_conf.xml.sample bam_to_cram/tool_data_table_conf.xml.test bam_to_sam/macros.xml bam_to_sam/test-data/bam_to_sam_in1.bam bam_to_sam/test-data/bam_to_sam_in1.sam bam_to_sam/test-data/bam_to_sam_in2.bam bam_to_sam/test-data/bam_to_sam_in2.sam bam_to_sam/test-data/bam_to_sam_out1.sam bam_to_sam/test-data/bam_to_sam_out2.sam bam_to_sam/test-data/bam_to_sam_out3.sam cram_to_bam/macros.xml cram_to_bam/tool-data/fasta_indexes.loc.sample cram_to_bam/tool_data_table_conf.xml.sample cram_to_bam/tool_data_table_conf.xml.test macros.xml sam_to_bam/macros.xml sam_to_bam/test-data/chr_m.fasta sam_to_bam/test-data/sam_to_bam_in1.sam sam_to_bam/test-data/sam_to_bam_noheader_in2.sam sam_to_bam/test-data/sam_to_bam_out1.bam sam_to_bam/test-data/sam_to_bam_out2.bam sam_to_bam/test-data/sam_to_bam_out3.bam sam_to_bam/tool-data/fasta_indexes.loc.sample sam_to_bam/tool_data_table_conf.xml.sample sam_to_bam/tool_data_table_conf.xml.test samtools_bedcov/macros.xml samtools_bedcov/test-data/eboVir3.1.bed samtools_bedcov/test-data/eboVir3.2.bam samtools_bedcov/test-data/eboVir3.2.bed samtools_bedcov/test-data/eboVir3.bam samtools_bedcov/test-data/samtools_bedcov_out1.tab samtools_bedcov/test-data/samtools_bedcov_out2.tab samtools_calmd/macros.xml samtools_calmd/test-data/phiX.bam samtools_calmd/test-data/phiX.fasta samtools_calmd/test-data/samtools_calmd_out_1.bam samtools_calmd/test-data/samtools_calmd_out_2.bam samtools_calmd/tool-data/fasta_indexes.loc.sample samtools_calmd/tool_data_table_conf.xml.sample samtools_depth/macros.xml samtools_depth/test-data/eboVir3.1.bed samtools_depth/test-data/eboVir3.2.bam samtools_depth/test-data/eboVir3.2.bed samtools_depth/test-data/eboVir3.bam samtools_depth/test-data/samtools_depth_out1.tab samtools_depth/test-data/samtools_depth_out2.tab samtools_depth/test-data/samtools_depth_out3.tab samtools_depth/test-data/samtools_depth_out4.tab samtools_fastx/macros.xml samtools_fastx/test-data/1.1.fq.expected samtools_fastx/test-data/1.2.fq.expected samtools_fastx/test-data/1.stdout.expected samtools_fastx/test-data/10.1.fq.expected samtools_fastx/test-data/10.2.fq.expected samtools_fastx/test-data/10.s.fq.expected samtools_fastx/test-data/2.1.fq.expected samtools_fastx/test-data/2.2.fq.expected samtools_fastx/test-data/2.s.fq.expected samtools_fastx/test-data/2.stdout.expected samtools_fastx/test-data/3.1.fq.expected samtools_fastx/test-data/3.2.fq.expected samtools_fastx/test-data/3.s.fq.expected samtools_fastx/test-data/3.stdout.expected samtools_fastx/test-data/4.1.fq.expected samtools_fastx/test-data/4.2.fq.expected samtools_fastx/test-data/4.s.fq.expected samtools_fastx/test-data/4.stdout.expected samtools_fastx/test-data/5.1.fq.expected samtools_fastx/test-data/5.2.fq.expected samtools_fastx/test-data/5.s.fq.expected samtools_fastx/test-data/6.1.fq.expected samtools_fastx/test-data/6.2.fq.expected samtools_fastx/test-data/6.s.fq.expected samtools_fastx/test-data/7.1.fq.expected samtools_fastx/test-data/7.2.fq.expected samtools_fastx/test-data/7.s.fq.expected samtools_fastx/test-data/8.1.fq.expected samtools_fastx/test-data/8.2.fq.expected samtools_fastx/test-data/8.i.fq.expected samtools_fastx/test-data/8.s.fq.expected samtools_fastx/test-data/9.1.fq.expected samtools_fastx/test-data/9.2.fq.expected samtools_fastx/test-data/bam2fq.001.sam samtools_fastx/test-data/bam2fq.002.sam samtools_fastx/test-data/bam2fq.003.sam samtools_fastx/test-data/bam2fq.004.sam samtools_fastx/test-data/bam2fq.005.sam samtools_fastx/test-data/bam2fq.010.sam samtools_fastx/test-data/bc.fq.expected samtools_fastx/test-data/bc10.fq.expected samtools_fastx/test-data/bc_split.fq.expected samtools_fastx/test-data/samtools_fastx-in1.bam samtools_fastx/test-data/samtools_fastx-in2.bam samtools_fastx/test-data/samtools_fastx-in3.sam samtools_fastx/test-data/samtools_fastx-out1-1.fasta samtools_fastx/test-data/samtools_fastx-out1-1.fasta.gz samtools_fastx/test-data/samtools_fastx-out1-2.fasta samtools_fastx/test-data/samtools_fastx-out1-2.fasta.gz samtools_fastx/test-data/samtools_fastx-out1-3.fasta samtools_fastx/test-data/samtools_fastx-out1-3.fasta.gz samtools_fastx/test-data/samtools_fastx-out1.fasta samtools_fastx/test-data/samtools_fastx-out1.fasta.gz samtools_fastx/test-data/samtools_fastx-out2-1.fastq samtools_fastx/test-data/samtools_fastx-out2-1.fastq.gz samtools_fastx/test-data/samtools_fastx-out2-2.fastq samtools_fastx/test-data/samtools_fastx-out2-2.fastq.gz samtools_fastx/test-data/samtools_fastx-out2-3.fastq samtools_fastx/test-data/samtools_fastx-out2-3.fastq.gz samtools_fastx/test-data/samtools_fastx-out3-1.fasta samtools_fastx/test-data/samtools_fastx-out3-1.fasta.gz samtools_fastx/test-data/samtools_fastx-out3-2.fasta samtools_fastx/test-data/samtools_fastx-out3-2.fasta.gz samtools_fastx/test-data/samtools_fastx-out3-3.fasta samtools_fastx/test-data/samtools_fastx-out3-3.fasta.gz samtools_fixmate/macros.xml samtools_fixmate/test-data/2_isize_overflow.bam.expected samtools_fixmate/test-data/2_isize_overflow.sam samtools_fixmate/test-data/2_isize_overflow.sam.expected samtools_fixmate/test-data/3_reverse_read_pp_lt.bam.expected samtools_fixmate/test-data/3_reverse_read_pp_lt.sam samtools_fixmate/test-data/3_reverse_read_pp_lt.sam.expected samtools_fixmate/test-data/4_reverse_read_pp_equal.bam.expected samtools_fixmate/test-data/4_reverse_read_pp_equal.sam samtools_fixmate/test-data/4_reverse_read_pp_equal.sam.expected samtools_fixmate/test-data/5_ct.bam.expected samtools_fixmate/test-data/5_ct.sam samtools_fixmate/test-data/5_ct.sam.expected samtools_fixmate/test-data/6_ct_replace.bam.expected samtools_fixmate/test-data/6_ct_replace.sam samtools_fixmate/test-data/6_ct_replace.sam.expected samtools_fixmate/test-data/7_two_read_mapped.bam.expected samtools_fixmate/test-data/7_two_read_mapped.sam samtools_fixmate/test-data/7_two_read_mapped.sam.expected samtools_flagstat/macros.xml samtools_flagstat/test-data/samtools_flagstat_input1.bam samtools_flagstat/test-data/samtools_flagstat_out1.txt samtools_idxstats/macros.xml samtools_idxstats/test-data/phiX.bam samtools_idxstats/test-data/samtools_idxstats_out.tabular samtools_idxstats/test-data/test_input_1_a.bam samtools_idxstats/test-data/test_input_1_a.bam.expected samtools_markdup/macros.xml samtools_markdup/test-data/5_markdup.expected.bam samtools_markdup/test-data/5_markdup.expected.sam samtools_markdup/test-data/5_markdup.sam samtools_markdup/test-data/6_remove_dups.expected.bam samtools_markdup/test-data/6_remove_dups.expected.sam samtools_markdup/test-data/6_remove_dups.sam samtools_markdup/test-data/7_mark_supp_dup.bam samtools_markdup/test-data/7_mark_supp_dup.expected.bam samtools_markdup/test-data/7_mark_supp_dup.expected.sam samtools_markdup/test-data/7_mark_supp_dup.sam samtools_merge/macros.xml samtools_merge/test-data/2.merge.expected-samin.bam samtools_merge/test-data/2.merge.expected.bam samtools_merge/test-data/2.merge.expected.sam samtools_merge/test-data/4.merge.expected.bam samtools_merge/test-data/6.merge.expected.bam samtools_merge/test-data/7.merge.expected.bam samtools_merge/test-data/test_input_1_a.bam samtools_merge/test-data/test_input_1_a.sam samtools_merge/test-data/test_input_1_a_regex.sam samtools_merge/test-data/test_input_1_b.bam samtools_merge/test-data/test_input_1_b.sam samtools_merge/test-data/test_input_1_b_regex.sam samtools_merge/test-data/test_input_1_c.bam samtools_merge/test-data/test_input_1_c.sam samtools_mpileup/macros.xml samtools_mpileup/test-data/mpileup.1.bam samtools_mpileup/test-data/mpileup.2.bam samtools_mpileup/test-data/mpileup.3.bam samtools_mpileup/test-data/mpileup.out.1 samtools_mpileup/test-data/mpileup.out.3 samtools_mpileup/test-data/mpileup.ref.fa samtools_mpileup/test-data/mpileup.ref.fa.fai samtools_mpileup/test-data/phiX.bam samtools_mpileup/test-data/phiX.fasta samtools_mpileup/test-data/phiX.fasta.fai samtools_mpileup/test-data/phiX_1.bam samtools_mpileup/test-data/samtools_mpileup_in_1.bam samtools_mpileup/test-data/samtools_mpileup_out_1.pileup samtools_mpileup/test-data/samtools_mpileup_out_2.pileup samtools_mpileup/test-data/samtools_mpileup_out_3.pileup samtools_mpileup/test-data/samtools_mpileup_out_4.vcf samtools_mpileup/tool-data/fasta_indexes.loc.sample samtools_mpileup/tool_data_table_conf.xml.sample samtools_phase/macros.xml samtools_phase/test-data/empty_file.bam samtools_phase/test-data/samtools_phase_in_1.bam samtools_phase/test-data/samtools_phase_in_2.bam samtools_phase/test-data/samtools_phase_out_1_log.txt samtools_phase/test-data/samtools_phase_out_1_phase0.bam samtools_phase/test-data/samtools_phase_out_1_phase1.bam samtools_phase/test-data/samtools_phase_out_2_chimera.bam samtools_phase/test-data/samtools_phase_out_2_log.txt samtools_phase/test-data/samtools_phase_out_2_phase0.bam samtools_phase/test-data/samtools_phase_out_2_phase1.bam samtools_phase/test-data/samtools_phase_out_3_log.txt samtools_phase/test-data/samtools_phase_out_3_phase0.bam samtools_phase/test-data/samtools_phase_out_3_phase1.bam samtools_reheader/macros.xml samtools_reheader/samtools_reheader.xml samtools_reheader/test-data/reheader_input_file.bam samtools_reheader/test-data/reheader_input_header.bam samtools_reheader/test-data/reheader_out.bam samtools_slice_bam/macros.xml samtools_slice_bam/test-data/bam-slice-input.bam samtools_slice_bam/test-data/bam-slice-test1.bam samtools_slice_bam/test-data/bam-slice-test2.bam samtools_slice_bam/test-data/bam-slice-test3.bam samtools_slice_bam/test-data/bam-slice.bed samtools_sort/macros.xml samtools_sort/test-data/1.bam samtools_sort/test-data/1_sort.bam samtools_sort/test-data/1_sort_read_names.bam samtools_sort/test-data/name.sort.expected.bam samtools_sort/test-data/name.sort.expected.sam samtools_sort/test-data/pos.sort.expected.bam samtools_sort/test-data/pos.sort.expected.sam samtools_sort/test-data/tag.as.sort.expected.bam samtools_sort/test-data/tag.as.sort.expected.sam samtools_sort/test-data/tag.fi.sort.expected.bam samtools_sort/test-data/tag.fi.sort.expected.sam samtools_sort/test-data/tag.rg.n.sort.expected.bam samtools_sort/test-data/tag.rg.n.sort.expected.sam samtools_sort/test-data/tag.rg.sort.expected.bam samtools_sort/test-data/tag.rg.sort.expected.sam samtools_sort/test-data/test_input_1_a.bam samtools_split/macros.xml samtools_split/test-data/phiX.bam samtools_split/test-data/phiX_Elephant.bam samtools_split/test-data/phiX_Human.bam samtools_split/test-data/phiX_Mouse.bam samtools_split/test-data/samtools_split_out.bam samtools_stats/macros.xml samtools_stats/test-data/1.stats.expected samtools_stats/test-data/11.stats.expected samtools_stats/test-data/11.stats.g4.expected samtools_stats/test-data/11.stats.targets samtools_stats/test-data/11_target.bam samtools_stats/test-data/11_target.bam.bai samtools_stats/test-data/11_target.sam samtools_stats/test-data/12.2reads.nooverlap.expected samtools_stats/test-data/12.2reads.overlap.expected samtools_stats/test-data/12.3reads.nooverlap.expected samtools_stats/test-data/12.3reads.overlap.expected samtools_stats/test-data/12_2reads.bed samtools_stats/test-data/12_3reads.bed samtools_stats/test-data/12_overlaps.bam samtools_stats/test-data/1_map_cigar.sam samtools_stats/test-data/2.stats.expected samtools_stats/test-data/2_equal_cigar_full_seq.sam samtools_stats/test-data/5_insert_cigar.sam samtools_stats/test-data/6.stats.expected samtools_stats/test-data/phiX.bam samtools_stats/test-data/samtools_stats_input.bam samtools_stats/test-data/samtools_stats_out1.tab samtools_stats/test-data/samtools_stats_out1__gcc.tab samtools_stats/test-data/samtools_stats_out1__mpc.tab samtools_stats/test-data/samtools_stats_out1__sn.tab samtools_stats/test-data/samtools_stats_out2.tab samtools_stats/test-data/samtools_stats_out2__gcc.tab samtools_stats/test-data/samtools_stats_out2__mpc.tab samtools_stats/test-data/samtools_stats_out2__sn.tab samtools_stats/test-data/samtools_stats_ref.fa samtools_stats/test-data/samtools_stats_ref.fa.fai samtools_stats/test-data/test.fa samtools_stats/tool-data/fasta_indexes.loc.sample samtools_stats/tool_data_table_conf.xml.sample samtools_view/macros.xml samtools_view/test-data/1.bam samtools_view/test-data/1_sort.bam samtools_view/test-data/1_sort_read_names.bam samtools_view/test-data/bam_to_sam_in1.bam samtools_view/test-data/bam_to_sam_in1.sam samtools_view/test-data/bam_to_sam_in2.bam samtools_view/test-data/bam_to_sam_in2.sam samtools_view/test-data/bam_to_sam_out1.sam samtools_view/test-data/bam_to_sam_out2.sam samtools_view/test-data/bam_to_sam_out3.sam samtools_view/test-data/chr_m.fasta samtools_view/test-data/sam_to_bam_in1.sam samtools_view/test-data/sam_to_bam_noheader_in2.sam samtools_view/test-data/sam_to_bam_out1.bam samtools_view/test-data/sam_to_bam_out2.bam samtools_view/test-data/sam_to_bam_out3.bam samtools_view/test-data/tag.as.sort.expected.sam samtools_view/test-data/tag.fi.sort.expected.sam samtools_view/test-data/tag.rg.n.sort.expected.sam samtools_view/test-data/tag.rg.sort.expected.sam samtools_view/test-data/test.bam samtools_view/test-data/test.cram samtools_view/test-data/test.fa samtools_view/test-data/test.fa.fai samtools_view/test-data/test.sam samtools_view/test-data/test2.cram samtools_view/test-data/test_counts.tab samtools_view/test-data/test_ds.bam samtools_view/test-data/test_ds.cram samtools_view/test-data/test_ds.sam samtools_view/test-data/test_input_1_a.bam samtools_view/tool-data/fasta_indexes.loc.sample samtools_view/tool_data_table_conf.xml.sample samtools_view/tool_data_table_conf.xml.test test-data/cached_locally/chr_m.fasta test-data/cached_locally/chr_m.fasta.fai test-data/cached_locally/fasta_indexes.loc tool_data_table_conf.xml.test
diffstat 309 files changed, 68374 insertions(+), 0 deletions(-) [+]
line wrap: on
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bam_to_cram/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
Binary file bam_to_cram/test-data/sam_to_bam_out2.bam has changed
Binary file bam_to_cram/test-data/test.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bam_to_cram/test-data/test.bed	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,1 @@
+CHROMOSOME_I	1	120
Binary file bam_to_cram/test-data/test.cram has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bam_to_cram/test-data/test.fa	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,3 @@
+>CHROMOSOME_I
+gcctaagcctaagcctaagcctaagcctaagcctaagcctaagcctaagc
+ctaagcctaagcctaagcctaagcctaagcctaagcctaagcctaagcct
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bam_to_cram/test-data/test.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,15 @@
+@HD	VN:1.4	SO:unsorted
+@SQ	SN:CHROMOSOME_I	LN:100
+@RG	ID:UNKNOWN	SM:UNKNOWN
+@PG	ID:bowtie2	PN:bowtie2	VN:2.0.0-beta5
+@PG	ID:0	CL:aaaaa/aaa/aaaaa/aaaaaa/aaaaaaaaa/aaa/iuc/package_aaaaaaaaa_x_y/aaaaaaaaaaaa/bin/aaaaaaaaaaaaaaaaa aaaaaaaaaa /aaaa/aaaaa/aaa/aaaaaaaaaaaaaaaaaaa/tools/aaaaaaaaa/test-data/test.cram aa /aaaa/aaaaa/aaa/aaaaaaaaaaaaaaaaaaa/tools/aaaaaaaaa/test-data/test.fa -O test	PN:samtools	VN:1.2
+SRR065390.14978392	16	CHROMOSOME_I	2	1	27M1D73M	*	0	0	CCTAGCCCTAACCCTAACCCTAACCCTAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	#############################@B?8B?BA@@DDBCDDCBC@CDCDCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	RG:Z:UNKNOWN	XG:i:1	XM:i:5	XN:i:0	XO:i:1	AS:i:-18	XS:i:-18	YT:Z:UU
+SRR065390.921023	16	CHROMOSOME_I	3	12	100M	*	0	0	CTAAGCCTAAATCTAAGCCTAACCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	###############################################???88:;98768700000<>:BBA?BBAB?BBBBBBBB>B>BB::;?:00000	RG:Z:UNKNOWN	XG:i:0	XM:i:3	XN:i:0	XO:i:0	AS:i:-6	XS:i:-13	YT:Z:UU
+SRR065390.1871511	16	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	<?@<@A8>0:BB@>B<=B@???@=8@B>BB@CA@DACDCBBCCCA@CCCCACCBCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	RG:Z:UNKNOWN	XG:i:0	XM:i:0	XN:i:0	XO:i:0	AS:i:0	XS:i:0	YT:Z:UU
+SRR065390.3743423	16	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	##################?6@:7<=@3=@ABAAB>BDBBABADABDDDBDDBCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	RG:Z:UNKNOWN	XG:i:0	XM:i:0	XN:i:0	XO:i:0	AS:i:0	XS:i:0	YT:Z:UU
+SRR065390.4251890	16	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	###########@BB=BCBBC?B>B;>B@@ADBBB@DBBBBDCCBBCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	RG:Z:UNKNOWN	XG:i:0	XM:i:0	XN:i:0	XO:i:0	AS:i:0	XS:i:0	YT:Z:UU
+SRR065390.5238868	16	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	@,=@@D8D;?BBB>;?BBB==BB@D;>D>BBB>BBDDB<DABADCACDCCBCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	RG:Z:UNKNOWN	XG:i:0	XM:i:0	XN:i:0	XO:i:0	AS:i:0	XS:i:0	YT:Z:UU
+SRR065390.6023338	0	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAAGCTAC	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC@CCDDDBCCABB=DABBA?################	RG:Z:UNKNOWN	XG:i:0	XM:i:3	XN:i:0	XO:i:0	AS:i:-6	XS:i:-6	YT:Z:UU
+SRR065390.6815812	16	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	###############?@.@?B;B0B=;<DADB@@BDDBBDDBCBCBD@CCDCCCCCCCDCCCCCCCCACCCCCCCCCCBCCCCCCDCCCCCCCCCCCBCC	RG:Z:UNKNOWN	XG:i:0	XM:i:0	XN:i:0	XO:i:0	AS:i:0	XS:i:0	YT:Z:UU
+SRR065390.6905811	16	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	#######################BB@>A<BC>@@BCCB@=BACBCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	RG:Z:UNKNOWN	XG:i:0	XM:i:0	XN:i:0	XO:i:0	AS:i:0	XS:i:0	YT:Z:UU
+SRR065390.8289592	16	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	###############################A?@C9@@BC=AABDD@A@DC@CB=@BA?6@CCAAC@+CCCCCCCCCCCCCCC@CCCCCCCCCCCCCCCC	RG:Z:UNKNOWN	XG:i:0	XM:i:0	XN:i:0	XO:i:0	AS:i:0	XS:i:0	YT:Z:UU
Binary file bam_to_cram/test-data/test2.cram has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bam_to_cram/tool-data/fasta_indexes.loc.sample	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,29 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of Samtools indexed sequences data files.  You will need
+#to create these data files and then create a fasta_indexes.loc file
+#similar to this one (store it in this directory) that points to
+#the directories in which those files are stored. The fasta_indexes.loc
+#file has this format (white space characters are TAB characters):
+#
+# <unique_build_id>	<dbkey>	<display_name>	<file_base_path>
+#
+#So, for example, if you had hg19 Canonical indexed stored in
+#
+# /depot/data2/galaxy/hg19/sam/,
+#
+#then the fasta_indexes.loc entry would look like this:
+#
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
+#
+#and your /depot/data2/galaxy/hg19/sam/ directory
+#would contain hg19canon.fa and hg19canon.fa.fai files.
+#
+#Your fasta_indexes.loc file should include an entry per line for
+#each index set you have stored.  The file in the path does actually
+#exist, but it should never be directly used. Instead, the name serves
+#as a prefix for the index file.  For example:
+#
+#hg18canon	hg18	Human (Homo sapiens): hg18 Canonical	/depot/data2/galaxy/hg18/sam/hg18canon.fa
+#hg18full	hg18	Human (Homo sapiens): hg18 Full	/depot/data2/galaxy/hg18/sam/hg18full.fa
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
+#hg19full	hg19	Human (Homo sapiens): hg19 Full	/depot/data2/galaxy/hg19/sam/hg19full.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bam_to_cram/tool_data_table_conf.xml.sample	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,6 @@
+<tables>
+    <table name="fasta_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/fasta_indexes.loc" />
+    </table>
+</tables>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bam_to_cram/tool_data_table_conf.xml.test	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,6 @@
+<tables>
+    <table name="fasta_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="${__HERE__}/test-data/cached_locally/fasta_indexes.loc" />
+    </table>
+</tables>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bam_to_sam/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
Binary file bam_to_sam/test-data/bam_to_sam_in1.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bam_to_sam/test-data/bam_to_sam_in1.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,14 @@
+@HD	VN:1.0	SO:coordinate
+@SQ	SN:chr1	LN:101
+@SQ	SN:chr7	LN:404
+@SQ	SN:chr8	LN:202
+@RG	ID:0	SM:Hi,Mom!
+@PG	ID:1	PN:Hey!	VN:2.0
+both_reads_align_clip_marked	83	chr7	1	255	101M	=	302	201	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_present_only_first_aligns	89	chr7	1	255	101M	*	0	0	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+read_2_too_many_gaps	83	chr7	1	255	101M	=	302	201	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_adapter	147	chr7	16	255	101M	=	21	-96	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_adapter	99	chr7	21	255	101M	=	16	96	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_marked	163	chr7	302	255	101M	=	1	-201	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
+read_2_too_many_gaps	163	chr7	302	255	10M1D10M5I76M	=	1	-201	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
+both_reads_present_only_first_aligns	165	*	0	0	*	chr7	1	0	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
Binary file bam_to_sam/test-data/bam_to_sam_in2.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bam_to_sam/test-data/bam_to_sam_in2.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,25 @@
+@HD	VN:1.0	SO:coordinate
+@SQ	SN:chr1	LN:10001
+@SQ	SN:chr2	LN:100001
+@SQ	SN:chr3	LN:10001
+@SQ	SN:chr4	LN:1001
+@RG	ID:rg1	SM:s1
+@RG	ID:rg2	SM:s3
+bar:record:4	77	chr1	1	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg1
+bar:record:6	77	chr1	1	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg2
+bar:record:1	77	chr1	10	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg1
+bar:record:3	77	chr1	10	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg2
+bar:record:1	141	chr1	20	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg1
+bar:record:7	77	chr1	20	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg2
+bar:record:8	77	chr1	30	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg2
+bar:record:4	141	chr1	40	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg1
+bar:record:5	77	chr1	40	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg2
+bar:record:6	141	chr1	50	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg2
+bar:record:2	77	chr2	10	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg1
+bar:record:2	141	chr2	30	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg2
+bar:record:3	141	chr3	20	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg1
+bar:record:8	141	chr3	20	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg1
+bar:record:5	141	chr3	40	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg1
+bar:record:9	77	chr4	10	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg1
+bar:record:7	141	chr4	20	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg1
+bar:record:9	141	chr4	60	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bam_to_sam/test-data/bam_to_sam_out1.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,14 @@
+@HD	VN:1.0	SO:coordinate
+@SQ	SN:chr1	LN:101
+@SQ	SN:chr7	LN:404
+@SQ	SN:chr8	LN:202
+@RG	ID:0	SM:Hi,Mom!
+@PG	ID:1	PN:Hey!	VN:2.0
+both_reads_align_clip_marked	83	chr7	1	255	101M	=	302	201	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_present_only_first_aligns	89	chr7	1	255	101M	*	0	0	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+read_2_too_many_gaps	83	chr7	1	255	101M	=	302	201	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_adapter	147	chr7	16	255	101M	=	21	-96	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_adapter	99	chr7	21	255	101M	=	16	96	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_marked	163	chr7	302	255	101M	=	1	-201	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
+read_2_too_many_gaps	163	chr7	302	255	10M1D10M5I76M	=	1	-201	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
+both_reads_present_only_first_aligns	165	*	0	0	*	chr7	1	0	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bam_to_sam/test-data/bam_to_sam_out2.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,6 @@
+@HD	VN:1.0	SO:coordinate
+@SQ	SN:chr1	LN:101
+@SQ	SN:chr7	LN:404
+@SQ	SN:chr8	LN:202
+@RG	ID:0	SM:Hi,Mom!
+@PG	ID:1	PN:Hey!	VN:2.0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bam_to_sam/test-data/bam_to_sam_out3.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,8 @@
+both_reads_align_clip_marked	83	chr7	1	255	101M	=	302	201	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_present_only_first_aligns	89	chr7	1	255	101M	*	0	0	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+read_2_too_many_gaps	83	chr7	1	255	101M	=	302	201	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_adapter	147	chr7	16	255	101M	=	21	-96	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_adapter	99	chr7	21	255	101M	=	16	96	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_marked	163	chr7	302	255	101M	=	1	-201	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
+read_2_too_many_gaps	163	chr7	302	255	10M1D10M5I76M	=	1	-201	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
+both_reads_present_only_first_aligns	165	*	0	0	*	chr7	1	0	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cram_to_bam/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cram_to_bam/tool-data/fasta_indexes.loc.sample	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,29 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of Samtools indexed sequences data files.  You will need
+#to create these data files and then create a fasta_indexes.loc file
+#similar to this one (store it in this directory) that points to
+#the directories in which those files are stored. The fasta_indexes.loc
+#file has this format (white space characters are TAB characters):
+#
+# <unique_build_id>	<dbkey>	<display_name>	<file_base_path>
+#
+#So, for example, if you had hg19 Canonical indexed stored in
+#
+# /depot/data2/galaxy/hg19/sam/,
+#
+#then the fasta_indexes.loc entry would look like this:
+#
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
+#
+#and your /depot/data2/galaxy/hg19/sam/ directory
+#would contain hg19canon.fa and hg19canon.fa.fai files.
+#
+#Your fasta_indexes.loc file should include an entry per line for
+#each index set you have stored.  The file in the path does actually
+#exist, but it should never be directly used. Instead, the name serves
+#as a prefix for the index file.  For example:
+#
+#hg18canon	hg18	Human (Homo sapiens): hg18 Canonical	/depot/data2/galaxy/hg18/sam/hg18canon.fa
+#hg18full	hg18	Human (Homo sapiens): hg18 Full	/depot/data2/galaxy/hg18/sam/hg18full.fa
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
+#hg19full	hg19	Human (Homo sapiens): hg19 Full	/depot/data2/galaxy/hg19/sam/hg19full.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cram_to_bam/tool_data_table_conf.xml.sample	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,6 @@
+<tables>
+    <table name="fasta_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/fasta_indexes.loc" />
+    </table>
+</tables>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cram_to_bam/tool_data_table_conf.xml.test	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,6 @@
+<tables>
+    <table name="fasta_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="${__HERE__}/test-data/cached_locally/fasta_indexes.loc" />
+    </table>
+</tables>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sam_to_bam/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sam_to_bam/test-data/chr_m.fasta	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,335 @@
+>chrM
+GTTAATGTAGCTTAATAATATAAAGCAAGGCACTGAAAATGCCTAGATGA
+GTATTCTTACTCCATAAACACATAGGCTTGGTCCTAGCCTTTTTATTAGT
+TATTAATAGAATTACACATGCAAGTATCCGCACCCCAGTGAGAATGCCCT
+CTAAATCACGTCTCTACGATTAAAAGGAGCAGGTATCAAGCACACTAGAA
+AGTAGCTCATAACACCTTGCTCAGCCACACCCCCACGGGACACAGCAGTG
+ATAAAAATTAAGCTATGAACGAAAGTTCGACTAAGTCATATTAAATAAGG
+GTTGGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAATTA
+ATAAATCTCCGGCGTAAAGCGTGTCAAAGACTAATACCAAAATAAAGTTA
+AAACCCAGTTAAGCCGTAAAAAGCTACAACCAAAGTAAAATAGACTACGA
+AAGTGACTTTAATACCTCTGACTACACGATAGCTAAGACCCAAACTGGGA
+TTAGATACCCCACTATGCTTAGCCCTAAACTAAAATAGCTTACCACAACA
+AAGCTATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTT
+GGCGGTGCTTTACATCCCTCTAGAGGAGCCTGTTCCATAATCGATAAACC
+CCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT
+CAGCAAACCCTAAACAAGGTACCGAAGTAAGCACAAATATCCAACATAAA
+AACGTTAGGTCAAGGTGTAGCCCATGGGATGGAGAGAAATGGGCTACATT
+TTCTACCCTAAGAACAAGAACTTTAACCCGGACGAAAGTCTCCATGAAAC
+TGGAGACTAAAGGAGGATTTAGCAGTAAATTAAGAATAGAGAGCTTAATT
+GAATCAGGCCATGAAGCGCGCACACACCGCCCGTCACCCTCCTTAAATAT
+CACAAATCATAACATAACATAAAACCGTGACCCAAACATATGAAAGGAGA
+CAAGTCGTAACAAGGTAAGTATACCGGAAGGTGTACTTGGATAACCAAAG
+TGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATTTCACTCAAAA
+TGAACACTTTGAACTAAAGCTAGCCCAAACAATACCTAATTCAATTACCC
+TTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAG
+AAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAACGATGAAAG
+ATGCATTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT
+AATGATTTAACTAGAATAAACTTAGCAAAGAGAACTTAAGCTAAGCACCC
+CGAAACCAGACGAGCTACCTATGAACAGTTACAAATGAACCAACTCATCT
+ATGTCGCAAAATAGTGAGAAGATTCGTAGGTAGAGGTGAAAAGCCCAACG
+AGCCTGGTGATAGCTGGTTGTCCAGAAACAGAATTTCAGTTCAAATTTAA
+ATTTACCTAAAAACTACTCAATTCTAATGTAAATTTAAATTATAGTCTAA
+AAAGGTACAGCTTTTTAGATACAGGTTACAACCTTCATTAGAGAGTAAGA
+ACAAGATAAACCCATAGTTGGCTTAAAAGCAGCCATCAATTAAGAAAGCG
+TTCAAGCTCAACGACACATCTATCTTAATCCCAACAATCAACCCAAACTA
+ACTCCTAATCTCATACTGGACTATTCTATCAACACATAGAAGCAATAATG
+TTAATATGAGTAACAAGAATTATTTCTCCTTGCATAAGCTTATATCAGAA
+CGAATACTCACTGATAGTTAACAACAAGATAGGGATAATCCAAAAACTAA
+TCATCTATTTAAACCATTGTTAACCCAACACAGGCATGCATCTATAAGGA
+AAGATTAAAAGAAGTAAAAGGAACTCGGCAAACACAAACCCCGCCTGTTT
+ACCAAAAACATCACCTCTAGCATTTCCAGTATTAGAGGCACTGCCTGCCC
+AGTGACATCTGTTtaaacggccgcggtatcctaaccgtgcaaaggtagca
+taatcacttgttccctaaatagggacttgtatgaatggccacacgagggt
+tttactgtctcttacttccaatcagtgaaattgaccttcccgtgaagagg
+cgggaatgactaaataagacgagaagaccctatggagcttTAATTAACTG
+ATTCACAAAAAACAACACACAAACCTTAACCTTCAGGGACAACAAAACTT
+TTGATTGAATCAGCAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAAC
+CTCCGAGTGATTTAAATCCAGACTAACCAGTCAAAATATATAATCACTTA
+TTGATCCAAACCATTGATCAACGGAACAAGTTACCCTAGGGATAACAGCG
+CAATCCTATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCGATG
+TTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTT
+CAACGATTAAAGTCTTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGT
+CGGTTTCTATCTATTCTATACTTTTCCCAGTACGAAAGGACAAGAAAAGT
+AGGGCCCACTTTACAAGAAGCGCCCTCAAACTAATAGATGACATAATCTA
+AATCTAACTAATTTATAACTTCTACCGCCCTAGAACAGGGCTCgttaggg
+tggcagagcccggaaattgcataaaacttaaacctttacactcagaggtt
+caactcctctccctaacaacaTGTTCATAATTAACGTCCTCCTCCTAATT
+GTCCCAATCTTGCTCGCCGTAGCATTCCTCACACTAGTTGAACGAAAAGT
+CTTAGGCTATATGCAACTTCGCAAAGGACCCAACATCGTAGGCCCCTATG
+GCCTACTACAACCTATTGCCGATGCCCTCAAACTATTTATCAAAGAGCCA
+CTACAACCACTAACATCATCGACATCCATATTCATCATCGCACCAATCCT
+AGCCCTAACCCTGGCCTTAACCATATGAATCCCTCTGCCCATACCATACC
+CACTAATCAACATAAACCTAGGAATTCTATTCATACTAGCCATGTCCAGC
+CTAGCTGTCTACTCAATCCTTTGATCAGGATGGGCCTCAAACTCAAAATA
+CGCCCTAATTGGAGCTCTACGAGCAGTAGCACAAACCATCTCATACGAAG
+TAACTCTAGCAATCATCCTACTCTCAGTCCTCCTAATAAGCGGATCATTC
+ACATTATCAACACTTATTATTACCCAAGAATACCTCTGATTAATCTTCCC
+ATCATGACCCTTAGCCATAATGTGATTCATCTCAACATTAGCCGAAACCA
+ACCGAGCTCCATTTGACCTAACAGAAGGAGAATCAGAACTCGTCTCTGGA
+TTCAACGTTGAATACGCAGCCGGCCCATTTGCTCTATTCTTCCTAGCAGA
+ATACGCAAACATCATCATGATAAACATCTTCACAACAACCCTATTTCTAG
+GAGCATTTCACAACCCCTACCTGCCAGAACTCTACTCAATTAATTTCACC
+ATTAAAGCTCTCCTTCTAACATGTTCCTTCCTATGAATCCGAGCATCCTA
+CCCACGATTCCGATATGACCAACTTATACACCTCCTATGAAAGAACTTCC
+TACCACTCACACTAGCCCTCTGCATATGACACGTCTCACTTCCAATCATA
+CTATCCAGCATCCCACCACAAACATAGGAAATATGTCTGACAAAAGAGTT
+ACTTTGATAGAGTAAAACATAGAGGCTCAAACCCTCTTATTTctagaact
+acaggaattgaacctgctcctgagaattcaaaatcctccgtgctaccgaa
+ttacaccatgtcctaCAAGTAAGGTCAGCTAAATAAGCTATCGGGCCCAT
+ACCCCGAAAATGTTGGATTACACCCTTCCCGTACTAATAAATCCCCTTAT
+CTTCACAACTATTCTAATAACAGTTCTTCTAGGAACTATAATCGTTATAA
+TAAGCTCACACTGACTAATAATCTGAATCGGATTTGAAATAAATCTACTA
+GCCATTATCCCTATCCTAATAAAAAAGTACAATCCCCGAACCATAGAAGC
+CTCCACCAAATATTTTCTAACCCAAGCCACCGCATCAATACTCCTCATAA
+TAGCGATCATCATTAACCTCATACACTCAGGCCAATGAACAATCACAAAA
+GTCTTCAACCCCACAGCGTCCATCATTATAACTTCAGCTCTCGCCATAAA
+ACTTGGACTCACACCATTCCACTTCTGAGTACCCGAAGTCACACAGGGCA
+TCTCATTAACATCAGGTCTCATCCTACTTACATGACAAAAACTAGCCCCA
+ATATCAATCCTATATCAAATCTCACCCTCAATTAACCTAAATATCTTATT
+AACTATAGCCGTACTGTCAATCCTAGTAGGAGGCTGAGGCGGTCTCAACC
+AAACCCAACTACGAAAAATCATAGCATACTCGTCAATCGCGCATATAGGA
+TGAATAACAGCTGTCCTAGTATATAACCCAACACTAACAATACTAAACAT
+ATTAATTTACATTATAATAACACTCACAATATTCATACTATTTATCCACA
+GCTCCTCTACTACAACACTATCACTCTCCCACACATGAAACAAAATACCT
+CTAACCACTACACTAATCTTAATTACCTTACTATCCATAGGAGGCCTCCC
+CCCACTATCAGGATTCATACCCAAATGAATAATCATTCAAGAGCTCACCA
+AAAATAGCAGCATCATCCTCCCCACACTAATAGCCATTATAGCACTACTC
+AACCTCTACTTCTACATACGACTAACCTATTCCACCTCACTGACCATATT
+CCCATCCACAAACAACATAAAAATAAAATGACAATTCGAAACCAAACGAA
+TTACTCTCTTACCCCCGTTAATTGTTATATCCTCCCTACTCCTCCCCCTA
+ACCCCCATACTATCAATTTTGGACTAGGAATTTAGGTTAACATCCCAGAC
+CAAGAGCCTTCAAAGCTCTAAGCAAGTGAATCCACTTAATTCCTGCATAC
+TAAGGACTGCGAGACTCTATCTCACATCAATTGAACGCAAATCAAACTCT
+TTTATTAAGCTAAGCCCTTACTAGATTGGTGGGCTACCATCCCACGAAAT
+TTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTTCTCC
+CGCCGCCTAGAAAAAAAGGCGGGAGAAGCCCCGGCAGAAATTGAAGCTGC
+TCCTTTGAATTTGCAATTCAATGTGAAAATTCACCACGGGACTTGATAAG
+AAGAGGATTCCAACCCCTGTCTTTAGATTTACAGTCTAATGCTTACTCAG
+CCATCTTACCTATGTTCATCAACCGCTGACTATTTTCAACTAACCACAAA
+GACATCGGCACTCTGTACCTCCTATTCGGCGCTTGAGCTGGAATAGTAGG
+AACTGCCCTAAGCCTCCTAATCCGTGCTGAATTAGGCCAACCTGGGACCC
+TACTAGGAGATGATCAGATCTACAATGTCATTGTAACCGCCCATGCATTC
+GTAATAATTTTCTTTATGGTCATACCCATTATAATCGGAGGATTCGGAAA
+CTGATTAGTCCCCCTGATAATTGGAGCACCTGATATAGCTTTCCCCCGAA
+TAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTTCTTCTC
+GCTTCCTCAATAATTGAAGCAGGTGCCGGAACAGGCTGAACCGTATATCC
+TCCTCTAGCTGGAAATCTGGCGCATGCAGGAGCCTCTGTTGACTTAACCA
+TTTTCTCTCTCCACCTAGCTGGGGTGTCCTCGATTTTAGGTGCCATCAAC
+TTTATTACCACAATCATTAACATAAAACCACCAGCCCTATCCCAATATCA
+AACCCCCCTATTCGTTTGATCTGTCCTTATTACGGCAGTACTCCTTCTCC
+TAGCCCTCCCGGTCCTAGCAGCAGGCATTACCATGCTTCTCACAGACCGT
+AACCTGAACACTACTTTCTTCGACCCCGCAGGAGGAGGGGATCCAATCCT
+TTATCAACACCTATTCTGATTCTTCGGACACCCCGAAGTCTATATTCTTA
+TCCTACCAGGCTTCGGTATAATCTCACACATCGTCACATACTACTCAGGT
+AAAAAGGAACCTTTTGGCTACATGGGTATAGTGTGAGCTATAATATCCAT
+TGGCTTTCTAGGCTTCATCGTATGGGCTCACCACATGTTTACAGTAGGGA
+TAGACGTTGACACACGAGCATACTTCACATCAGCTACCATAATCATCGCT
+ATCCCTACTGGTGTAAAAGTATTCAGCTGACTAGCCACCCTGCACGGAGG
+AAATATCAAATGATCTCCAGCTATACTCTGAGCTCTAGGCTTCATCTTCT
+TATTCACAGTAGGAGGTCTAACAGGAATCGTCCTAGCTAACTCATCCCTA
+GATATTGTTCTCCACGATACTTATTATGTAGTAGCACATTTCCATTATGT
+CCTGTCTATAGGAGCAGTCTTCGCCATTATGGGGGGATTTGTACACTGAT
+TCCCTCTATTCTCAGGATACACACTCAACCAAACCTGAGCAAAAATCCAC
+TTTACAATTATATTCGTAGGGGTAAATATAACCTTCTTCCCACAACATTT
+CCTTGGCCTCTCAGGAATGCCACGACGCTATTCTGATTATCCAGACGCAT
+ATACAACATGAAATACCATCTCATCCATAGGATCTTTTATCTCACTTACA
+GCAGTGATACTAATAATTTTCATAATTTGAGAAGCGTTCGCATCCAAACG
+AGAAGTGTCTACAGTAGAATTAACCTCAACTAATCTGGAATGACTACACG
+GATGCCCCCCACCATACCACACATTTGAAGAACCCACCTACGTAAACCTA
+AAAtaagaaaggaaggaatcgaaccccctctaactggtttcaagccaata
+tcataaccactatgtctttctcCATCAATTGAGGTATTAGTAAAAATTAC
+ATGACTTTGTCAAAGTTAAATTATAGGTTAAACCCCTATATACCTCTATG
+GCCTACCCCTTCCAACTAGGATTCCAAGACGCAACATCCCCTATTATAGA
+AGAACTCCTACACTTCCACGACCACACACTAATAATCGTATTCCTAATTA
+GCTCTCTAGTATTATATATTATCTCATCAATACTAACAACTAAATTAACC
+CATACCAGCACCATAGATGCTCAAGAAGTAGAGACAATTTGAACGATTTT
+ACCAGCCATCATCCTTATTCTAATCGCCCTCCCATCCCTACGAATTCTAT
+ATATAATAGATGAAATCAATAATCCGTCCCTCACAGTCAAAACAATAGGC
+CACCAATGATACTGAAGCTACGAGTATACCGATTACGAAGACTTGACCTT
+TGACTCCTACATGATCCCCACATCAGACCTAAAACCAGGAGAATTACGTC
+TTCTAGAAGTCGACAATCGAGTGGTTCTCCCCATAGAAATAACCATCCGA
+ATGCTAATTTCATCCGAAGACGTCCTACACTCATGAGCTGTGCCCTCCCT
+AGGCCTAAAAACAGACGCTATCCCTGGGCGCCTAAATCAGACAACTCTCG
+TGGCCTCTCGACCAGGACTTTACTACGGTCAATGCTCAGAGATCTGCGGA
+TCAAACCACAGCTTTATACCAATTGTCCTTGAACTAGTTCCACTGAAACA
+CTTCGAAGAATGATCTGCATCAATATTATAAAGTCACTAAGAAGCTATTA
+TAGCATTAACCTTTTAAGTTAAAGATTGAGGGTTCAACCCCCTCCCTAGT
+GATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTCAAT
+AATCCTAACTCTATTTATTGTATTTCAACTAAAAATCTCAAAGCACTCCT
+ATCCGACACACCCAGAAGTAAAGACAACCAAAATAACAAAACACTCTGCC
+CCTTGAGAATCAAAATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCA
+ACAATAGTAGGCCTCCCTATTGTAATTCTGATCATCATATTTCCCAGCAT
+CCTATTCCCCTCACCCAACCGACTAATCAACAATCGCCTAATCTCAATTC
+AACAATGGCTAGTCCAACTTACATCAAAACAAATAATAGCTATCCATAAC
+AGCAAAGGACAAACCTGAACTCTTATACTCATATCACTGATCCTATTCAT
+TGGCTCAACAAACTTATTAGGCCTACTACCTCACTCATTTACACCAACAA
+CACAACTATCAATAAACCTAGGCATAGCTATTCCCCTATGGGCAGGGACA
+GTATTCATAGGCTTTCGTCACAAAACAAAAGCAGCCCTAGCCCACTTTCT
+ACCTCAAGGGACGCCCATTTTCCTCATCCCCATACTAGTAATTATCGAGA
+CTATCAGCCTATTTATTCAACCTGTAGCCCTAGCCGTGCGGCTAACCGCT
+AACATTACCGCCGGACACCTCCTAATACACCTCATCGGAGGGGCAACACT
+AGCCCTCATAAGCATCAGCCCCTCAACAGCCCTTATTACGTTTATCATCC
+TAATTCTACTAACTATCCTCGAATTCGCAGTAGCTATAATCCAAGCCTAC
+GTATTCACTCTCCTGGTAAGCCTTTACTTACACGACAACACCTAATGACC
+CACCAAACCCACGCTTACCACATAGTAAACCCCAGCCCATGACCACTTAC
+AGGAGCCCTATCAGCCCTCCTGATAACATCAGGACTAGCCATGTGATTTC
+ACTTTAACTCAACCTTACTTCTAGCTATAGGGCTATTAACTAACATCCTT
+ACCATATATCAATGATGACGAGACATCATCCGAGAAAGCACATTCCAAGG
+CCATCACACATCAATCGTTCAAAAGGGACTCCGATATGGCATAATCCTTT
+TTATTATCTCAGAAGTCTTCTTCTTCTCTGGCTTCTTCTGAGCCTTTTAC
+CACTCAAGCCTAGCCCCCACACCCGAACTAGGCGGCTGCTGACCACCCAC
+AGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCTTACTCAACACCTCAG
+TGCTCCTAGCATCTGGAGTCTCTATCACCTGAGCCCACCATAGCCTAATA
+GAAGGAAACCGTAAAAATATGCTCCAAGGCCTATTCATCACAATTTCACT
+AGGCGTATACTTCACCCTTCTCCAAGCCTCAGAATACTATGAAGCCTCAT
+TTACTATTTCAGATGGAGTATACGGATCAACATTTTTCGTAGCAACAGGG
+TTCCACGGACTACACGTAATTATCGGATCTACCTTCCTCATTGTATGTTT
+CCTACGCCAACTAAAATTCCACTTTACATCCAGCCACCACTTCGGATTCG
+AAGCAGCCGCTTGATACTGACACTTCGTCGACGTAGTCTGACTATTCTTG
+TACGTCTCTATTTATTGATGAGGATCCTATTCTTTTAGTATTGACCAGTA
+CAATTGACTTCCAATCAATCAGCTTCGGTATAACCCGAAAAAGAATAATA
+AACCTCATACTGACACTCCTCACTAACACATTACTAGCCTCGCTACTCGT
+ACTCATCGCATTCTGACTACCACAACTAAACATCTATGCAGAAAAAACCA
+GCCCATATGAATGCGGATTTGACCCTATAGGGTCAGCACGCCTCCCCTTC
+TCAATAAAATTTTTCTTAGTGGCCATTACATTTCTGCTATTCGACTTAGA
+AATTGCCCTCCTATTACCCCTTCCATGAGCATCCCAAACAACTAACCTAA
+ACACTATACTTATCATAGCACTAGTCCTAATCTCTCTTCTAGCCATCAGC
+CTAGCCTACGAATGAACCCAAAAAGGACTAGAATGAACTGAGTATGGTAA
+TTAGTTTAAACCAAAACAAATGATTTCGACTCATTAAACTATGATTAACT
+TCATAATTACCAACATGTCACTAGTCCATATTAATATCTTCCTAGCATTC
+ACAGTATCCCTCGTAGGCCTACTAATGTACCGATCCCACCTAATATCCTC
+ACTCCTATGCCTAGAAGGAATAATACTATCACTATTCGTCATAGCAACCA
+TAATAGTCCTAAACACCCACTTCACACTAGCTAGTATAATACCTATCATC
+TTACTAGTATTTGCTGCCTGCGAACGAGCTCTAGGATTATCCCTACTAGT
+CATAGTCTCCAATACTTATGGAGTAGACCACGTACAAAACCTTAACCTCC
+TCCAATGCTAAAAATTATCATTCCCACAATCATACTTATGCCCCTTACAT
+GACTATCAAAAAAGAATATAATCTGAATCAACACTACAACCTATAGTCTA
+TTAATCAGCCTTATCAGCCTATCCCTCCTAAACCAACCTAGCAACAATAG
+CCTAAACTTCTCACTAATATTCTTCTCCGATCCCCTATCAGCCCCACTTC
+TGGTGTTGACAACATGACTACTGCCACTAATACTCATAGCCAGCCAACAC
+CATCTATCTAAGGAACCACTAATCCGAAAAAAACTCTACATCACCATGCT
+AACCATACTTCAAACTTTCCTAATCATGACTTTTACCGCCACAGAACTAA
+TCTCCTTCTACATCCTATTTGAAGCCACATTAGTTCCAACACTAATTATC
+ATCACCCGCTGAGGCAACCAAACAGAACGCCTGAACGCAGGCCTCTACTT
+CCTATTCTACACACTAATAGGTTCCCTCCCACTCTTAGTTGCACTAATCT
+CTATCCAAAACCTAACAGGCTCACTAAACTTCCTATTAATTCAATACTGA
+AACCAAGCACTACCCGACTCTTGATCCAATATTTTCCTATGACTAGCATG
+TATAATAGCATTCATAGTCAAAATACCGGTATATGGTCTTCACCTCTGAC
+TCCCAAAAGCCCATGTAGAAGCCCCAATTGCCGGATCCATAGTGCTAGCA
+GCCATTCTACTAAAACTAGGAGGCTACGGAATACTACGAATTACAACAAT
+ACTAAACCCCCAAACTAGCTTTATAGCCTACCCCTTCCTCATACTATCCC
+TGTGAGGAATAATCATAACTAGTTCCATCTGCTTGCGACAAACCGATCTA
+AAATCACTTATTGCATACTCCTCTGTCAGCCACATAGCCCTAGTAATCGT
+AGCCGTCCTCATCCAAACACCATGAAGTTATATAGGAGCTACAGCCCTAA
+TAATCGCTCACGGCCTTACATCATCAATACTATTCTGCCTGGCAAACTCA
+AATTACGAACGTACCCATAGCCGAACTATAATCCTAGCCCGCGGGCTTCA
+AACACTTCTTCCCCTTATAGCAGCCTGATGACTATTAGCCAGCCTAACCA
+ACCTGGCCCTCCCTCCCAGCATTAACCTAATTGGAGAGCTATTCGTAGTA
+ATATCATCATTCTCATGATCAAATATTACCATTATCCTAATAGGAGCCAA
+TATCACCATCACCGCCCTCTACTCCCTATACATACTAATCACAACACAAC
+GAGGGAAATACACACACCATATCAACAGCATTAAACCTTCATTTACACGA
+GAAAACGCACTCATGGCCCTCCACATGACTCCCCTACTACTCCTATCACT
+TAACCCTAAAATTATCCTAGGCTTTACGTACTGTAAATATAGTTTAACAA
+AAACACTAGATTGTGGATCTAGAAACAGAAACTTAATATTTCTTATTTAC
+CGAGAAAGTATGCAAGAACTGCTAATTCATGCCCCCATGTCCAACAAACA
+TGGCTCTCTCAAACTTTTAAAGGATAGGAGCTATCCGTTGGTCTTAGGAA
+CCAAAAAATTGGTGCAACTCCAAATAAAAGTAATCAACATGTTCTCCTCC
+CTCATACTAGTTTCACTATTAGTACTAACCCTCCCAATCATATTATCAAT
+CTTCAATACCTACAAAAACAGCACGTTCCCGCATCATGTAAAAAACACTA
+TCTCATATGCCTTCATTACTAGCCTAATTCCCACTATAATATTTATTCAC
+TCTGGACAAGAAACAATTATCTCAAACTGACACTGAATAACCATACAAAC
+CCTCAAACTATCCCTAAGCTTCAAACTAGATTACTTCTCAATAATTTTCG
+TACCAGTAGCCCTATTCGTAACATGATCTATTATGGAATTCTCCCTATGA
+TACATGCACTCAGATCCTTACATTACTCGATTTTTTAAATACTTACTTAC
+ATTCCTCATCACTATAATAATTCTAGTCACAGCTAACAACCTTTTCCAAC
+TGTTCATCGGATGGGAGGGAGTAGGCATCATGTCATTCTTACTAATCGGA
+TGATGATACGGCCGAACAGATGCCAACACCGCGGCCCTTCAAGCAATCCT
+TTATAACCGCATCGGGGATATCGGCTTCATCATGGCCATAGCCTGATTCC
+TATTCAACACCAACACATGAGACCTCCAACAAATCTTCATACTCGACCCC
+AACCTTACCAACCTCCCGCTCCTAGGCCTCCTCCTAGCCGCAACTGGCAA
+ATCCGCTCAATTTGGACTCCACCCATGACTTCCTTCAGCCATAGAGGGCC
+CTACACCAGTCTCAGCCCTACTCCACTCCAGCACAATAGTTGTAGCAGGC
+GTCTTCCTGCTAATCCGCTTCCATCCACTAATAGAAAACAACAAAACAAT
+CCAGTCACTTACCCTATGCCTAGGAGCCATCACCACACTATTCACAGCAA
+TCTGCGCACTCACTCAAAACGATATCAAAAAAATCATTGCTTTCTCCACC
+TCCAGCCAACTAGGCCTGATAATCGTAACCATCGGTATCAATCAACCCTA
+CCTAGCATTCCTCCACATTTGCACTCACGCATTCTTCAAAGCTATACTAT
+TTATATGTTCCGGATCCATTATCCACAGCCTAAATGACGAGCAAGATATC
+CGAAAAATAGGCGGACTATTTAATGCAATACCCTTCACCACCACATCTCT
+AATTATTGGCAGCCTTGCACTCACCGGAATTCCTTTCCTCACAGGCTTCT
+ACTCCAAAGACCTCATCATCGAAACCGCCAACACATCGTACACCAACGCC
+TGAGCCCTACTAATAACTCTCATTGCCACATCCCTCACAGCTGTCTACAG
+TACCCGAATCATCTTCTTTGCACTCCTAGGGCAACCCCGCTTCCTCCCTC
+TGACCTCAATCAACGAAAATAACCCCTTTCTAATTAACTCCATCAAACGC
+CTCTTAATTGGCAGCATTTTTGCCGGATTCTTCATCTCCAACAATATCTA
+CCCCACAACCGTCCCAGAAATAACCATACCTACTTACATAAAACTCACCG
+CCCTCGCAGTAACCATCCTAGGATTTACACTAGCCCTAGAACTAAGCTTG
+ATAACCCATAACTTAAAACTAGAACACTCCACCAACGTATTCAAATTCTC
+CAACCTCCTAGGATACTACCCAACAATTATACACCGACTCCCACCGCTCG
+CTAACCTATCAATAAGCCAAAAATCAGCATCACTTCTACTAGACTCAATC
+TGACTAGAAAACATCCTGCCAAAATCTATCTCCCAGTTCCAAATAAAAAC
+CTCGATCCTAATTTCCACCCAAAAAGGACAAATCAAATTATATTTCCTCT
+CATTCCTCATCACCCTTACCCTAAGCATACTACTTTTTAATCTCCACGAG
+TAACCTCTAAAATTACCAAGACCCCAACAAGCAACGATCAACCAGTCACA
+ATCACAACCCAAGCCCCATAACTATACAATGCAGCAGCCCCTATAATTTC
+CTCACTAAACGCCCCAGAATCTCCAGTATCATAAATAGCTCAAGCCCCCA
+CACCACTAAACTTAAACACTACCCCCACTTCCTCACTCTTCAGAACATAT
+AAAACCAACATAACCTCCATCAACAACCCTAAAAGAAATACCCCCATAAC
+AGTCGTATTAGACACCCATACCTCAGGATACTGCTCAGTAGCCATAGCCG
+TTGTATAACCAAAAACAACCAACATTCCTCCCAAATAAATCAAAAACACC
+ATCAACCCCAAAAAGGACCCTCCAAAATTCATAATAATACCACAACCTAC
+CCCTCCACTTACAATCAGCACTAAACCCCCATAAATAGGTGAAGGTTTTG
+AAGAAAACCCCACAAAACTAACAACAAAAATAACACTCAAAATAAACACA
+ATATATGTCATCATTATTCCCACGTGGAATCTAACCACGACCAATGACAT
+GAAAAATCATCGTTGTATTTCAACTATAAGAACACCAATGACAAACATCC
+GGAAATCTCACCCACTAATTAAAATCATCAATCACTCTTTTATTGACCTA
+CCAGCCCCCTCAAACATTTCATCATGATGAAACTTCGGCTCCCTCCTAGG
+AATCTGCCTAATCCTCCAAATCTTAACAGGCCTATTCCTAGCCATACACT
+ACACATCAGACACGACAACTGCCTTCTCATCCGTCACTCACATCTGCCGA
+GACGTTAACTACGGATGAATTATTCGCTACCTCCATGCCAACGGAGCATC
+AATATTTTTTATCTGCCTCTTCATTCACGTAGGACGCGGCCTCTACTACG
+GCTCTTACACATTCCTAGAGACATGAAACATTGGAATCATCCTACTTTTC
+ACAGTTATAGCTACAGCATTCATGGGCTATGTCCTACCATGAGGCCAAAT
+ATCCTTTTGAGGAGCAACAGTCATCACGAACCTCCTATCAGCAATTCCCT
+ACATCGGTACTACCCTCGTCGAGTGAATCTGAGGTGGATTCTCAGTAGAC
+AAAGCCACCCTTACCCGATTTTTTGCTTTCCACTTCATCCTACCCTTCAT
+CATCACAGCCCTGGTAGTCGTACATTTACTATTTCTTCACGAAACAGGAT
+CTAATAACCCCTCAGGAATCCCATCCGATATGGACAAAATCCCATTCCAC
+CCATATTATACAATTAAAGACATCCTAGGACTCCTCCTCCTGATCTTGCT
+CCTACTAACTCTAGTATTATTCTCCCCCGACCTCCTAGGAGACCCAGACA
+ACTACACCCCAGCTAACCCTCTCAGCACTCCCCCTCATATTAAACCAGAA
+TGGTACTTCCTGTTTGCCTACGCCATCCTACGCTCCATTCCCAACAAACT
+AGGCGGCGTATTAGCCCTAATCCTCTCCATCCTGATCCTAGCACTCATCC
+CCACCCTCCACATATCAAAACAACGAAGCATAATATTCCGGCCTCTCAGC
+CAATGCGTATTCTGACTCTTAGTGGCAGACTTACTGACACTAACATGAAT
+CGGCGGACAGCCAGTGGAACACCCATACGTAATTATCGGCCAACTGGCCT
+CAATCCTCTACTTCTCCCTAATTCTCATTTTTATACCACTCGCAAGCACC
+ATCGAAAACAATCTTCTAAAATGAAGAGTCCCTGTAGTATATCGCACATT
+ACCCTGGTCTTGTAAACCAGAAAAGGGGGAAAACGTTTCCTCCCAAGGAC
+TATCAAGGAAGAAGCTCTAGCTCCACCATCAACACCCAAAGCTGAAATTC
+TACTTAAACTATTCCTTGATTTCTTCCCCTAAACGACAACAATTTACCCT
+CATGTGCTATGTCAGTATCAGATTATACCCCCACATAACACCATACCCAC
+CTGACATGCAATATCTTATGAATGGCCTATGTACGTCGTGCATTAAATTG
+TCTGCCCCATGAATAATAAGCATGTACATAATATCATTTATCTTACATAA
+GTACATTATATTATTGATCGTGCATACCCCATCCAAGTCAAATCATTTCC
+AGTCAACACGCATATCACAGCCCATGTTCCACGAGCTTAATCACCAAGCC
+GCGGGAAATCAGCAACCCTCCCAACTACGTGTCCCAATCCTCGCTCCGGG
+CCCATCCAAACGTGGGGGTTTCTACAATGAAACTATACCTGGCATCTGGT
+TCTTTCTTCAGGGCCATTCCCACCCAACCTCGCCCATTCTTTCCCCTTAA
+ATAAGACATCTCGATGGACTAATGACTAATCAGCCCATGCTCACACATAA
+CTGTGATTTCATGCATTTGGTATCTTTTTATATTTGGGGATGCTATGACT
+CAGCTATGGCCGTCAAAGGCCTCGACGCAGTCAATTAAATTGAAGCTGGA
+CTTAAATTGAACGTTATTCCTCCGCATCAGCAACCATAAGGTGTTATTCA
+GTCCATGGTAGCGGGACATAGGAAACAAgtgcacctgtgcacctgtgcac
+ctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacct
+gtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgt
+gcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgc
+acctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcac
+ctgtgcacctACCCGCGCAGTAAGCAAGTAATATAGCTTTCTTAATCAAA
+CCCCCCCTACCCCCCATTAAACTCCACATATGTACATTCAACACAATCTT
+GCCAAACCCCAAAAACAAGACTAAACAATGCACAATACTTCATGAAGCTT
+AACCCTCGCATGCCAACCATAATAACTCAACACACCTAACAATCTTAACA
+GAACTTTCCCCCCGCCATTAATACCAACATGCTACTTTAATCAATAAAAT
+TTCCATAGACAGGCATCCCCCTAGATCTAATTTTCTAAATCTGTCAACCC
+TTCTTCCCCC
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sam_to_bam/test-data/sam_to_bam_in1.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,13 @@
+@HD	VN:1.0	SO:coordinate
+@SQ	SN:chrM	LN:100001
+@RG	ID:rg1	SM:s1
+HWI-EAS91_1_30788AAXX:1:1:1513:715	16	chrM	9563	25	36M	*	0	0	CTGACTACCACAACTAAACATCTATGCNNAAAAAAC	I+-II?IDIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1698:516	16	chrM	2735	25	36M	*	0	0	TTTACACTCAGAGGTTCAACTCCTCTCNNTAACAAC	I9IIIII5IIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1491:637	16	chrM	10864	25	36M	*	0	0	TGTAGAAGCCCCAATTGCCGGATCCATNNTGCTAGC	DBAIIIIIIIIIIIFIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1711:249	16	chrM	10617	25	36M	*	0	0	ACCAAACAGAACGCCTGAACGCAGGCCNNTACTTCC	IIIIIIIIIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1634:211	0	chrM	9350	25	36M	*	0	0	GAAGCAGNNGCTTGATACTGACACTTCGTCGACGTA	IIIIIII""IIIIIIIIIIIIIIIIIIIIII9IIDF	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1218:141	16	chrM	14062	25	36M	*	0	0	ACAAAACTAACAACAAAAATAACACTCNNAATAAAC	I+IIII1IIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1398:854	16	chrM	3921	25	36M	*	0	0	CACCCTTCCCGTACTAATAAATCCCCTNNTCTTCAC	IIIII=AIIIIIIIIIIIIIIBIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1310:991	16	chrM	10002	25	36M	*	0	0	CTCCTATGCCTAGAAGGAATAATACTANNACTATTC	I:2IEI:IIDIIIIII4IIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1716:413	0	chrM	6040	25	36M	*	0	0	GATCCAANNCTTTATCAACACCTATTCTGATTCTTC	IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1630:59	16	chrM	12387	25	36M	*	0	0	TCATACTCGACCCCAACCTTACCAACCNNCCGCTCC	FIIHII;IIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sam_to_bam/test-data/sam_to_bam_noheader_in2.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,10 @@
+HWI-EAS91_1_30788AAXX:1:1:1513:715	16	chrM	9563	25	36M	*	0	0	CTGACTACCACAACTAAACATCTATGCNNAAAAAAC	I+-II?IDIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1698:516	16	chrM	2735	25	36M	*	0	0	TTTACACTCAGAGGTTCAACTCCTCTCNNTAACAAC	I9IIIII5IIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1491:637	16	chrM	10864	25	36M	*	0	0	TGTAGAAGCCCCAATTGCCGGATCCATNNTGCTAGC	DBAIIIIIIIIIIIFIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1711:249	16	chrM	10617	25	36M	*	0	0	ACCAAACAGAACGCCTGAACGCAGGCCNNTACTTCC	IIIIIIIIIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1634:211	0	chrM	9350	25	36M	*	0	0	GAAGCAGNNGCTTGATACTGACACTTCGTCGACGTA	IIIIIII""IIIIIIIIIIIIIIIIIIIIII9IIDF	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1218:141	16	chrM	14062	25	36M	*	0	0	ACAAAACTAACAACAAAAATAACACTCNNAATAAAC	I+IIII1IIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1398:854	16	chrM	3921	25	36M	*	0	0	CACCCTTCCCGTACTAATAAATCCCCTNNTCTTCAC	IIIII=AIIIIIIIIIIIIIIBIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1310:991	16	chrM	10002	25	36M	*	0	0	CTCCTATGCCTAGAAGGAATAATACTANNACTATTC	I:2IEI:IIDIIIIII4IIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1716:413	0	chrM	6040	25	36M	*	0	0	GATCCAANNCTTTATCAACACCTATTCTGATTCTTC	IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1630:59	16	chrM	12387	25	36M	*	0	0	TCATACTCGACCCCAACCTTACCAACCNNCCGCTCC	FIIHII;IIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
Binary file sam_to_bam/test-data/sam_to_bam_out1.bam has changed
Binary file sam_to_bam/test-data/sam_to_bam_out2.bam has changed
Binary file sam_to_bam/test-data/sam_to_bam_out3.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sam_to_bam/tool-data/fasta_indexes.loc.sample	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,29 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of Samtools indexed sequences data files.  You will need
+#to create these data files and then create a fasta_indexes.loc file
+#similar to this one (store it in this directory) that points to
+#the directories in which those files are stored. The fasta_indexes.loc
+#file has this format (white space characters are TAB characters):
+#
+# <unique_build_id>	<dbkey>	<display_name>	<file_base_path>
+#
+#So, for example, if you had hg19 Canonical indexed stored in
+#
+# /depot/data2/galaxy/hg19/sam/,
+#
+#then the fasta_indexes.loc entry would look like this:
+#
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
+#
+#and your /depot/data2/galaxy/hg19/sam/ directory
+#would contain hg19canon.fa and hg19canon.fa.fai files.
+#
+#Your fasta_indexes.loc file should include an entry per line for
+#each index set you have stored.  The file in the path does actually
+#exist, but it should never be directly used. Instead, the name serves
+#as a prefix for the index file.  For example:
+#
+#hg18canon	hg18	Human (Homo sapiens): hg18 Canonical	/depot/data2/galaxy/hg18/sam/hg18canon.fa
+#hg18full	hg18	Human (Homo sapiens): hg18 Full	/depot/data2/galaxy/hg18/sam/hg18full.fa
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
+#hg19full	hg19	Human (Homo sapiens): hg19 Full	/depot/data2/galaxy/hg19/sam/hg19full.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sam_to_bam/tool_data_table_conf.xml.sample	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,7 @@
+<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
+<tables>
+    <table name="fasta_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/fasta_indexes.loc" />
+    </table>
+</tables>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sam_to_bam/tool_data_table_conf.xml.test	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,6 @@
+<tables>
+    <table name="fasta_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="${__HERE__}/test-data/cached_locally/fasta_indexes.loc" />
+    </table>
+</tables>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_bedcov/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_bedcov/test-data/eboVir3.1.bed	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,3 @@
+eboVir3	500	1500
+eboVir3	1500	2000
+eboVir3	1500	3000
Binary file samtools_bedcov/test-data/eboVir3.2.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_bedcov/test-data/eboVir3.2.bed	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,3 @@
+eboVir3	500	1500
+eboVir3	1500	2000
+eboVir3	1500	3000
Binary file samtools_bedcov/test-data/eboVir3.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_bedcov/test-data/samtools_bedcov_out1.tab	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,3 @@
+eboVir3	500	1500	7919
+eboVir3	1500	2000	3009
+eboVir3	1500	3000	9986
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_bedcov/test-data/samtools_bedcov_out2.tab	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,3 @@
+eboVir3	500	1500	7919	2094
+eboVir3	1500	2000	3009	1064
+eboVir3	1500	3000	9986	3455
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_calmd/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
Binary file samtools_calmd/test-data/phiX.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_calmd/test-data/phiX.fasta	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,79 @@
+>phiX174
+GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTT
+GATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAA
+ATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTG
+TCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTA
+GATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC
+TGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTT
+TCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTT
+CGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCT
+TGCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG
+TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTAC
+GGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTA
+CGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAG
+TGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACT
+AAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGC
+CCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA
+TCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGAC
+TCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA
+CTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAA
+GGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTT
+GGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACA
+ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGC
+TCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTT
+TCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC
+ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCGTGATGTTATTTCTTCATTTGGAGGTAAAAC
+CTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTT
+GATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGC
+CGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGAC
+TAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTG
+TATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGT
+TTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGA
+AGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGAT
+TATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTT
+ATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAAC
+GCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGC
+TTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGT
+TCTCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTA
+TATTTTGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTG
+TCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC
+CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTATGATGTTTATCCTTTG
+AATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGC
+CGGGCAATAATGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGT
+TTCGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTG
+CTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAA
+AGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTGATGCT
+GGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTG
+GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGA
+TAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTAT
+CTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG
+TTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA
+GATGCAAAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGAC
+CAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTA
+TGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCA
+AACGGCTGGTCAGTATTTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGAC
+TTAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTCTCATATTGGCGCTACTGCAAAGGATATTT
+CTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGA
+TACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCG
+TCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCGTT
+CTTATTACCCTTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTAT
+TGAGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGC
+ATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATG
+TTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGA
+ATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAGGG
+GACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCC
+CTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATT
+GCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGATGAATGCAATGCGACAG
+GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTT
+ATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCG
+CAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGC
+CGTCTTCATTTCCATGCGGTGCATTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTC
+GTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT
+CGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAG
+CCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA
+TGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACT
+TCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTG
+TCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGC
+AGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACC
+TGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA
+
Binary file samtools_calmd/test-data/samtools_calmd_out_1.bam has changed
Binary file samtools_calmd/test-data/samtools_calmd_out_2.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_calmd/tool-data/fasta_indexes.loc.sample	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,29 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of Samtools indexed sequences data files.  You will need
+#to create these data files and then create a fasta_indexes.loc file
+#similar to this one (store it in this directory) that points to
+#the directories in which those files are stored. The fasta_indexes.loc
+#file has this format (white space characters are TAB characters):
+#
+# <unique_build_id>	<dbkey>	<display_name>	<file_base_path>
+#
+#So, for example, if you had hg19 Canonical indexed stored in
+#
+# /depot/data2/galaxy/hg19/sam/,
+#
+#then the fasta_indexes.loc entry would look like this:
+#
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
+#
+#and your /depot/data2/galaxy/hg19/sam/ directory
+#would contain hg19canon.fa and hg19canon.fa.fai files.
+#
+#Your fasta_indexes.loc file should include an entry per line for
+#each index set you have stored.  The file in the path does actually
+#exist, but it should never be directly used. Instead, the name serves
+#as a prefix for the index file.  For example:
+#
+#hg18canon	hg18	Human (Homo sapiens): hg18 Canonical	/depot/data2/galaxy/hg18/sam/hg18canon.fa
+#hg18full	hg18	Human (Homo sapiens): hg18 Full	/depot/data2/galaxy/hg18/sam/hg18full.fa
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
+#hg19full	hg19	Human (Homo sapiens): hg19 Full	/depot/data2/galaxy/hg19/sam/hg19full.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_calmd/tool_data_table_conf.xml.sample	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="utf-8"?>
+<tables>
+    <table comment_char="#" name="fasta_indexes">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/fasta_indexes.loc" />
+    </table>
+</tables>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_depth/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_depth/test-data/eboVir3.1.bed	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,3 @@
+eboVir3	500	1500
+eboVir3	1500	2000
+eboVir3	1500	3000
Binary file samtools_depth/test-data/eboVir3.2.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_depth/test-data/eboVir3.2.bed	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,3 @@
+eboVir3	500	1500
+eboVir3	1500	2000
+eboVir3	1500	3000
Binary file samtools_depth/test-data/eboVir3.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_depth/test-data/samtools_depth_out1.tab	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,2500 @@
+eboVir3	501	5
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_depth/test-data/samtools_depth_out2.tab	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,1001 @@
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_depth/test-data/samtools_depth_out3.tab	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,18957 @@
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_depth/test-data/samtools_depth_out4.tab	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,18947 @@
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/1.1.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,72 @@
+@ref1_grp1_p001
+CGAGCTCGGT
++
+!!!!!!!!!!
+@ref1_grp1_p002
+CTCGGTACCC
++
+##########
+@ref1_grp1_p003
+GTACCCGGGG
++
+%%%%%%%%%%
+@ref1_grp1_p004
+CCGGGGATCC
++
+''''''''''
+@ref1_grp1_p005
+GGATCCTCTA
++
+))))))))))
+@ref1_grp1_p006
+CCTCTAGAGT
++
+++++++++++
+@ref1_grp2_p001
+AGCTCGGTAC
++
+""""""""""
+@ref1_grp2_p002
+CGGTACCCGG
++
+$$$$$$$$$$
+@ref1_grp2_p003
+ACCCGGGGAT
++
+&&&&&&&&&&
+@ref1_grp2_p004
+GGGGATCCTC
++
+((((((((((
+@ref1_grp2_p005
+ATCCTCTAGA
++
+**********
+@ref1_grp2_p006
+TCTAGAGTCG
++
+,,,,,,,,,,
+@ref2_grp3_p001
+GTGACACTATAGAAT
++
+~~~~~~~~~~~~~~~
+@ref2_grp3_p002
+CTGTTTCCTGTGTGA
++
+{{{{{{{{{{{{{{{
+@ref2_grp3_p003
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001
+TGCAGGCATG
++
+AAAAAAAAAA
+@ref12_grp2_p001
+CAAGCTTGAG
++
+AAAAAAAAAA
+@unaligned_grp3_p001
+CACTCGTTCATGACG
++
+0123456789abcde
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/1.2.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,72 @@
+@ref1_grp1_p001
+GTCGACTCTA
++
+----------
+@ref1_grp1_p002
+GCAGGTCGAC
++
+//////////
+@ref1_grp1_p003
+GCCTGCAGGT
++
+1111111111
+@ref1_grp1_p004
+GCATGCCTGC
++
+3333333333
+@ref1_grp1_p005
+GCTTGCATGC
++
+5555555555
+@ref1_grp1_p006
+TCAAGCTTGC
++
+7777777777
+@ref1_grp2_p001
+AGGTCGACTC
++
+..........
+@ref1_grp2_p002
+CTGCAGGTCG
++
+0000000000
+@ref1_grp2_p003
+ATGCCTGCAG
++
+2222222222
+@ref1_grp2_p004
+TTGCATGCCT
++
+4444444444
+@ref1_grp2_p005
+AAGCTTGCAT
++
+6666666666
+@ref1_grp2_p006
+ACTCAAGCTT
++
+8888888888
+@ref2_grp3_p001
+CTGTTTCCTGTGTGA
++
+|||||||||||||||
+@ref2_grp3_p002
+CGCCAAGCTATTTAG
++
+}}}}}}}}}}}}}}}
+@ref2_grp3_p003
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001
+CACTATAGAA
++
+BBBBBBBBBB
+@ref12_grp2_p001
+ATTTAGGTGA
++
+BBBBBBBBBB
+@unaligned_grp3_p001
+GAAAGTGAGGAGGTG
++
+edcba9876543210
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/10.1.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,68 @@
+@ref1_grp1_p001
+CGAGCTCGGT
++
+!!!!!!!!!!
+@ref1_grp1_p002
+CTCGGTACCC
++
+##########
+@ref1_grp1_p003
+GTACCCGGGG
++
+%%%%%%%%%%
+@ref1_grp1_p004
+CCGGGGATCC
++
+''''''''''
+@ref1_grp1_p005
+GGATCCTCTA
++
+))))))))))
+@ref1_grp1_p006
+CCTCTAGAGT
++
+++++++++++
+@ref1_grp2_p001
+AGCTCGGTAC
++
+""""""""""
+@ref1_grp2_p002
+CGGTACCCGG
++
+$$$$$$$$$$
+@ref1_grp2_p003
+ACCCGGGGAT
++
+&&&&&&&&&&
+@ref1_grp2_p004
+GGGGATCCTC
++
+((((((((((
+@ref1_grp2_p005
+ATCCTCTAGA
++
+**********
+@ref1_grp2_p006
+TCTAGAGTCG
++
+1111111111
+@ref2_grp3_p001
+GTGACACTATAGAAT
++
+~~~~~~~~~~~~~~~
+@ref2_grp3_p002
+CTGTTTCCTGTGTGA
++
+{{{{{{{{{{{{{{{
+@ref2_grp3_p003
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001
+TGCAGGCATG
++
+AAAAAAAAAA
+@ref12_grp2_p001
+CAAGCTTGAG
++
+AAAAAAAAAA
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/10.2.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,68 @@
+@ref1_grp1_p001
+GTCGACTCTA
++
+----------
+@ref1_grp1_p002
+GCAGGTCGAC
++
+//////////
+@ref1_grp1_p003
+GCCTGCAGGT
++
+1111111111
+@ref1_grp1_p004
+GCATGCCTGC
++
+3333333333
+@ref1_grp1_p005
+GCTTGCATGC
++
+5555555555
+@ref1_grp1_p006
+TCAAGCTTGC
++
+7777777777
+@ref1_grp2_p001
+AGGTCGACTC
++
+..........
+@ref1_grp2_p002
+CTGCAGGTCG
++
+0000000000
+@ref1_grp2_p003
+ATGCCTGCAG
++
+2222222222
+@ref1_grp2_p004
+TTGCATGCCT
++
+9999999999
+@ref1_grp2_p005
+AAGCTTGCAT
++
+6666666666
+@ref1_grp2_p006
+ACTCAAGCTT
++
+8888888888
+@ref2_grp3_p001
+CTGTTTCCTGTGTGA
++
+|||||||||||||||
+@ref2_grp3_p002
+CGCCAAGCTATTTAG
++
+}}}}}}}}}}}}}}}
+@ref2_grp3_p003
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001
+CACTATAGAA
++
+BBBBBBBBBB
+@ref12_grp2_p001
+ATTTAGGTGA
++
+BBBBBBBBBB
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/10.s.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,8 @@
+@ref1_grp2_p002a
+CGGTACCCGG
++
+$$$$$$$$$$
+@unaligned_grp3_p001
+CACTCGTTCATGACG
++
+0123456789abcde
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/2.1.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,72 @@
+@ref1_grp1_p001
+CGAGCTCGGT
++
+!!!!!!!!!!
+@ref1_grp1_p002
+CTCGGTACCC
++
+##########
+@ref1_grp1_p003
+GTACCCGGGG
++
+%%%%%%%%%%
+@ref1_grp1_p004
+CCGGGGATCC
++
+''''''''''
+@ref1_grp1_p005
+GGATCCTCTA
++
+))))))))))
+@ref1_grp1_p006
+CCTCTAGAGT
++
+++++++++++
+@ref1_grp2_p001
+AGCTCGGTAC
++
+""""""""""
+@ref1_grp2_p002
+CGGTACCCGG
++
+$$$$$$$$$$
+@ref1_grp2_p003
+ACCCGGGGAT
++
+&&&&&&&&&&
+@ref1_grp2_p004
+GGGGATCCTC
++
+((((((((((
+@ref1_grp2_p005
+ATCCTCTAGA
++
+**********
+@ref1_grp2_p006
+TCTAGAGTCG
++
+,,,,,,,,,,
+@ref2_grp3_p001
+GTGACACTATAGAAT
++
+~~~~~~~~~~~~~~~
+@ref2_grp3_p002
+CTGTTTCCTGTGTGA
++
+{{{{{{{{{{{{{{{
+@ref2_grp3_p003
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001
+TGCAGGCATG
++
+AAAAAAAAAA
+@ref12_grp2_p001
+CAAGCTTGAG
++
+AAAAAAAAAA
+@unaligned_grp3_p001
+CACTCGTTCATGACG
++
+0123456789abcde
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/2.2.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,72 @@
+@ref1_grp1_p001
+GTCGACTCTA
++
+----------
+@ref1_grp1_p002
+GCAGGTCGAC
++
+//////////
+@ref1_grp1_p003
+GCCTGCAGGT
++
+1111111111
+@ref1_grp1_p004
+GCATGCCTGC
++
+3333333333
+@ref1_grp1_p005
+GCTTGCATGC
++
+5555555555
+@ref1_grp1_p006
+TCAAGCTTGC
++
+7777777777
+@ref1_grp2_p001
+AGGTCGACTC
++
+..........
+@ref1_grp2_p002
+CTGCAGGTCG
++
+0000000000
+@ref1_grp2_p003
+ATGCCTGCAG
++
+2222222222
+@ref1_grp2_p004
+TTGCATGCCT
++
+4444444444
+@ref1_grp2_p005
+AAGCTTGCAT
++
+6666666666
+@ref1_grp2_p006
+ACTCAAGCTT
++
+8888888888
+@ref2_grp3_p001
+CTGTTTCCTGTGTGA
++
+|||||||||||||||
+@ref2_grp3_p002
+CGCCAAGCTATTTAG
++
+}}}}}}}}}}}}}}}
+@ref2_grp3_p003
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001
+CACTATAGAA
++
+BBBBBBBBBB
+@ref12_grp2_p001
+ATTTAGGTGA
++
+BBBBBBBBBB
+@unaligned_grp3_p001
+GAAAGTGAGGAGGTG
++
+edcba9876543210
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/3.1.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,72 @@
+@ref1_grp1_p001
+CGAGCTCGGT
++
+!!!!!!!!!!
+@ref1_grp1_p002
+CTCGGTACCC
++
+##########
+@ref1_grp1_p003
+GTACCCGGGG
++
+%%%%%%%%%%
+@ref1_grp1_p004
+CCGGGGATCC
++
+''''''''''
+@ref1_grp1_p005
+GGATCCTCTA
++
+))))))))))
+@ref1_grp1_p006
+CCTCTAGAGT
++
+++++++++++
+@ref1_grp2_p001
+AGCTCGGTAC
++
+""""""""""
+@ref1_grp2_p002
+CGGTACCCGG
++
+$$$$$$$$$$
+@ref1_grp2_p003
+ACCCGGGGAT
++
+&&&&&&&&&&
+@ref1_grp2_p004
+GGGGATCCTC
++
+((((((((((
+@ref1_grp2_p005
+ATCCTCTAGA
++
+**********
+@ref1_grp2_p006
+TCTAGAGTCG
++
+,,,,,,,,,,
+@ref2_grp3_p001
+GTGACACTATAGAAT
++
+~~~~~~~~~~~~~~~
+@ref2_grp3_p002
+CTGTTTCCTGTGTGA
++
+{{{{{{{{{{{{{{{
+@ref2_grp3_p003
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001
+TGCAGGCATG
++
+AAAAAAAAAA
+@ref12_grp2_p001
+CAAGCTTGAG
++
+AAAAAAAAAA
+@unaligned_grp3_p001
+CACTCGTTCATGACG
++
+0123456789abcde
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/3.2.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,72 @@
+@ref1_grp1_p001
+GTCGACTCTA
++
+----------
+@ref1_grp1_p002
+GCAGGTCGAC
++
+//////////
+@ref1_grp1_p003
+GCCTGCAGGT
++
+1111111111
+@ref1_grp1_p004
+GCATGCCTGC
++
+3333333333
+@ref1_grp1_p005
+GCTTGCATGC
++
+5555555555
+@ref1_grp1_p006
+TCAAGCTTGC
++
+7777777777
+@ref1_grp2_p001
+AGGTCGACTC
++
+..........
+@ref1_grp2_p002
+CTGCAGGTCG
++
+0000000000
+@ref1_grp2_p003
+ATGCCTGCAG
++
+2222222222
+@ref1_grp2_p004
+TTGCATGCCT
++
+4444444444
+@ref1_grp2_p005
+AAGCTTGCAT
++
+6666666666
+@ref1_grp2_p006
+ACTCAAGCTT
++
+8888888888
+@ref2_grp3_p001
+CTGTTTCCTGTGTGA
++
+|||||||||||||||
+@ref2_grp3_p002
+CGCCAAGCTATTTAG
++
+}}}}}}}}}}}}}}}
+@ref2_grp3_p003
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001
+CACTATAGAA
++
+BBBBBBBBBB
+@ref12_grp2_p001
+ATTTAGGTGA
++
+BBBBBBBBBB
+@unaligned_grp3_p001
+GAAAGTGAGGAGGTG
++
+edcba9876543210
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/3.s.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,4 @@
+@ref1_grp2_p002a
+CGGTACCCGG
++
+$$$$$$$$$$
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/4.1.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,68 @@
+@ref1_grp1_p001
+CGAGCTCGGT
++
+!!!!!!!!!!
+@ref1_grp1_p002
+CTCGGTACCC
++
+##########
+@ref1_grp1_p003
+GTACCCGGGG
++
+%%%%%%%%%%
+@ref1_grp1_p004
+CCGGGGATCC
++
+''''''''''
+@ref1_grp1_p005
+GGATCCTCTA
++
+))))))))))
+@ref1_grp1_p006
+CCTCTAGAGT
++
+++++++++++
+@ref1_grp2_p001
+AGCTCGGTAC
++
+""""""""""
+@ref1_grp2_p002
+CGGTACCCGG
++
+$$$$$$$$$$
+@ref1_grp2_p003
+ACCCGGGGAT
++
+&&&&&&&&&&
+@ref1_grp2_p004
+GGGGATCCTC
++
+((((((((((
+@ref1_grp2_p005
+ATCCTCTAGA
++
+**********
+@ref1_grp2_p006
+TCTAGAGTCG
++
+,,,,,,,,,,
+@ref2_grp3_p001
+GTGACACTATAGAAT
++
+~~~~~~~~~~~~~~~
+@ref2_grp3_p002
+CTGTTTCCTGTGTGA
++
+{{{{{{{{{{{{{{{
+@ref2_grp3_p003
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001
+TGCAGGCATG
++
+AAAAAAAAAA
+@ref12_grp2_p001
+CAAGCTTGAG
++
+AAAAAAAAAA
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/4.2.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,68 @@
+@ref1_grp1_p001
+GTCGACTCTA
++
+----------
+@ref1_grp1_p002
+GCAGGTCGAC
++
+//////////
+@ref1_grp1_p003
+GCCTGCAGGT
++
+1111111111
+@ref1_grp1_p004
+GCATGCCTGC
++
+3333333333
+@ref1_grp1_p005
+GCTTGCATGC
++
+5555555555
+@ref1_grp1_p006
+TCAAGCTTGC
++
+7777777777
+@ref1_grp2_p001
+AGGTCGACTC
++
+..........
+@ref1_grp2_p002
+CTGCAGGTCG
++
+0000000000
+@ref1_grp2_p003
+ATGCCTGCAG
++
+2222222222
+@ref1_grp2_p004
+TTGCATGCCT
++
+4444444444
+@ref1_grp2_p005
+AAGCTTGCAT
++
+6666666666
+@ref1_grp2_p006
+ACTCAAGCTT
++
+8888888888
+@ref2_grp3_p001
+CTGTTTCCTGTGTGA
++
+|||||||||||||||
+@ref2_grp3_p002
+CGCCAAGCTATTTAG
++
+}}}}}}}}}}}}}}}
+@ref2_grp3_p003
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001
+CACTATAGAA
++
+BBBBBBBBBB
+@ref12_grp2_p001
+ATTTAGGTGA
++
+BBBBBBBBBB
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/4.s.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,8 @@
+@ref1_grp2_p002a
+CGGTACCCGG
++
+$$$$$$$$$$
+@unaligned_grp3_p001
+CACTCGTTCATGACG
++
+0123456789abcde
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/5.1.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,68 @@
+@ref1_grp1_p001/1
+CGAGCTCGGT
++
+!!!!!!!!!!
+@ref1_grp1_p002/1
+CTCGGTACCC
++
+##########
+@ref1_grp1_p003/1
+GTACCCGGGG
++
+%%%%%%%%%%
+@ref1_grp1_p004/1
+CCGGGGATCC
++
+''''''''''
+@ref1_grp1_p005/1
+GGATCCTCTA
++
+))))))))))
+@ref1_grp1_p006/1
+CCTCTAGAGT
++
+++++++++++
+@ref1_grp2_p001/1
+AGCTCGGTAC
++
+""""""""""
+@ref1_grp2_p002/1
+CGGTACCCGG
++
+$$$$$$$$$$
+@ref1_grp2_p003/1
+ACCCGGGGAT
++
+&&&&&&&&&&
+@ref1_grp2_p004/1
+GGGGATCCTC
++
+((((((((((
+@ref1_grp2_p005/1
+ATCCTCTAGA
++
+**********
+@ref1_grp2_p006/1
+TCTAGAGTCG
++
+,,,,,,,,,,
+@ref2_grp3_p001/1
+GTGACACTATAGAAT
++
+~~~~~~~~~~~~~~~
+@ref2_grp3_p002/1
+CTGTTTCCTGTGTGA
++
+{{{{{{{{{{{{{{{
+@ref2_grp3_p003/1
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001/1
+TGCAGGCATG
++
+AAAAAAAAAA
+@ref12_grp2_p001/1
+CAAGCTTGAG
++
+AAAAAAAAAA
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/5.2.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,68 @@
+@ref1_grp1_p001/2
+GTCGACTCTA
++
+----------
+@ref1_grp1_p002/2
+GCAGGTCGAC
++
+//////////
+@ref1_grp1_p003/2
+GCCTGCAGGT
++
+1111111111
+@ref1_grp1_p004/2
+GCATGCCTGC
++
+3333333333
+@ref1_grp1_p005/2
+GCTTGCATGC
++
+5555555555
+@ref1_grp1_p006/2
+TCAAGCTTGC
++
+7777777777
+@ref1_grp2_p001/2
+AGGTCGACTC
++
+..........
+@ref1_grp2_p002/2
+CTGCAGGTCG
++
+0000000000
+@ref1_grp2_p003/2
+ATGCCTGCAG
++
+2222222222
+@ref1_grp2_p004/2
+TTGCATGCCT
++
+4444444444
+@ref1_grp2_p005/2
+AAGCTTGCAT
++
+6666666666
+@ref1_grp2_p006/2
+ACTCAAGCTT
++
+8888888888
+@ref2_grp3_p001/2
+CTGTTTCCTGTGTGA
++
+|||||||||||||||
+@ref2_grp3_p002/2
+CGCCAAGCTATTTAG
++
+}}}}}}}}}}}}}}}
+@ref2_grp3_p003/2
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001/2
+CACTATAGAA
++
+BBBBBBBBBB
+@ref12_grp2_p001/2
+ATTTAGGTGA
++
+BBBBBBBBBB
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/5.s.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,8 @@
+@ref1_grp2_p002a/1
+CGGTACCCGG
++
+$$$$$$$$$$
+@unaligned_grp3_p001/1
+CACTCGTTCATGACG
++
+0123456789abcde
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/6.1.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,68 @@
+@ref1_grp1_p001/1	RG:Z:grp1	BC:Z:AC-GT
+CGAGCTCGGT
++
+!!!!!!!!!!
+@ref1_grp1_p002/1	RG:Z:grp1	BC:Z:AATT+CCGG
+CTCGGTACCC
++
+##########
+@ref1_grp1_p003/1	RG:Z:grp1
+GTACCCGGGG
++
+%%%%%%%%%%
+@ref1_grp1_p004/1	RG:Z:grp1
+CCGGGGATCC
++
+''''''''''
+@ref1_grp1_p005/1	RG:Z:grp1
+GGATCCTCTA
++
+))))))))))
+@ref1_grp1_p006/1	RG:Z:grp1
+CCTCTAGAGT
++
+++++++++++
+@ref1_grp2_p001/1	RG:Z:grp2	BC:Z:TG+CA	QT:Z:ab+cd
+AGCTCGGTAC
++
+""""""""""
+@ref1_grp2_p002/1	RG:Z:grp2
+CGGTACCCGG
++
+$$$$$$$$$$
+@ref1_grp2_p003/1	RG:Z:grp2
+ACCCGGGGAT
++
+&&&&&&&&&&
+@ref1_grp2_p004/1	RG:Z:grp2
+GGGGATCCTC
++
+((((((((((
+@ref1_grp2_p005/1	RG:Z:grp2
+ATCCTCTAGA
++
+**********
+@ref1_grp2_p006/1	RG:Z:grp2
+TCTAGAGTCG
++
+,,,,,,,,,,
+@ref2_grp3_p001/1	RG:Z:grp3
+GTGACACTATAGAAT
++
+~~~~~~~~~~~~~~~
+@ref2_grp3_p002/1	RG:Z:grp3
+CTGTTTCCTGTGTGA
++
+{{{{{{{{{{{{{{{
+@ref2_grp3_p003/1	RG:Z:grp3
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001/1	RG:Z:grp1
+TGCAGGCATG
++
+AAAAAAAAAA
+@ref12_grp2_p001/1	RG:Z:grp2
+CAAGCTTGAG
++
+AAAAAAAAAA
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/6.2.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,68 @@
+@ref1_grp1_p001/2	RG:Z:grp1
+GTCGACTCTA
++
+----------
+@ref1_grp1_p002/2	RG:Z:grp1
+GCAGGTCGAC
++
+//////////
+@ref1_grp1_p003/2	RG:Z:grp1
+GCCTGCAGGT
++
+1111111111
+@ref1_grp1_p004/2	RG:Z:grp1
+GCATGCCTGC
++
+3333333333
+@ref1_grp1_p005/2	RG:Z:grp1
+GCTTGCATGC
++
+5555555555
+@ref1_grp1_p006/2	RG:Z:grp1
+TCAAGCTTGC
++
+7777777777
+@ref1_grp2_p001/2	RG:Z:grp2
+AGGTCGACTC
++
+..........
+@ref1_grp2_p002/2	RG:Z:grp2
+CTGCAGGTCG
++
+0000000000
+@ref1_grp2_p003/2	RG:Z:grp2
+ATGCCTGCAG
++
+2222222222
+@ref1_grp2_p004/2	RG:Z:grp2
+TTGCATGCCT
++
+4444444444
+@ref1_grp2_p005/2	RG:Z:grp2
+AAGCTTGCAT
++
+6666666666
+@ref1_grp2_p006/2	RG:Z:grp2
+ACTCAAGCTT
++
+8888888888
+@ref2_grp3_p001/2	RG:Z:grp3
+CTGTTTCCTGTGTGA
++
+|||||||||||||||
+@ref2_grp3_p002/2	RG:Z:grp3
+CGCCAAGCTATTTAG
++
+}}}}}}}}}}}}}}}
+@ref2_grp3_p003/2	RG:Z:grp3
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001/2	RG:Z:grp1
+CACTATAGAA
++
+BBBBBBBBBB
+@ref12_grp2_p001/2	RG:Z:grp2
+ATTTAGGTGA
++
+BBBBBBBBBB
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/6.s.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,8 @@
+@ref1_grp2_p002a/1	RG:Z:grp2
+CGGTACCCGG
++
+$$$$$$$$$$
+@unaligned_grp3_p001/1	RG:Z:grp3
+CACTCGTTCATGACG
++
+0123456789abcde
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/7.1.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,68 @@
+@ref1_grp1_p001/1	RG:Z:grp1	BC:Z:AC-GT	MD:Z:10
+CGAGCTCGGT
++
+!!!!!!!!!!
+@ref1_grp1_p002/1	RG:Z:grp1	BC:Z:AATT+CCGG	MD:Z:10
+CTCGGTACCC
++
+##########
+@ref1_grp1_p003/1	RG:Z:grp1	MD:Z:10
+GTACCCGGGG
++
+%%%%%%%%%%
+@ref1_grp1_p004/1	RG:Z:grp1	MD:Z:10
+CCGGGGATCC
++
+''''''''''
+@ref1_grp1_p005/1	RG:Z:grp1	MD:Z:10	ia:i:40000
+GGATCCTCTA
++
+))))))))))
+@ref1_grp1_p006/1	RG:Z:grp1	MD:Z:10	ia:i:255
+CCTCTAGAGT
++
+++++++++++
+@ref1_grp2_p001/1	RG:Z:grp2	BC:Z:TG+CA	QT:Z:ab+cd	MD:Z:8
+AGCTCGGTAC
++
+""""""""""
+@ref1_grp2_p002/1	RG:Z:grp2	MD:Z:10
+CGGTACCCGG
++
+$$$$$$$$$$
+@ref1_grp2_p003/1	RG:Z:grp2	MD:Z:10	ia:i:4294967295
+ACCCGGGGAT
++
+&&&&&&&&&&
+@ref1_grp2_p004/1	RG:Z:grp2	MD:Z:10	ia:i:-2147483648
+GGGGATCCTC
++
+((((((((((
+@ref1_grp2_p005/1	RG:Z:grp2	MD:Z:10	ia:i:-1000
+ATCCTCTAGA
++
+**********
+@ref1_grp2_p006/1	RG:Z:grp2	MD:Z:10	ia:i:-1
+TCTAGAGTCG
++
+,,,,,,,,,,
+@ref2_grp3_p001/1	RG:Z:grp3	MD:Z:15
+GTGACACTATAGAAT
++
+~~~~~~~~~~~~~~~
+@ref2_grp3_p002/1	RG:Z:grp3	MD:Z:15
+CTGTTTCCTGTGTGA
++
+{{{{{{{{{{{{{{{
+@ref2_grp3_p003/1	RG:Z:grp3	MD:Z:1T0T0C0T0A0T0A0G0T0G0T0C0A0C0
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001/1	RG:Z:grp1	MD:Z:10
+TGCAGGCATG
++
+AAAAAAAAAA
+@ref12_grp2_p001/1	RG:Z:grp2	MD:Z:10
+CAAGCTTGAG
++
+AAAAAAAAAA
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/7.2.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,68 @@
+@ref1_grp1_p001/2	RG:Z:grp1	MD:Z:10
+GTCGACTCTA
++
+----------
+@ref1_grp1_p002/2	RG:Z:grp1	MD:Z:10
+GCAGGTCGAC
++
+//////////
+@ref1_grp1_p003/2	RG:Z:grp1	MD:Z:10
+GCCTGCAGGT
++
+1111111111
+@ref1_grp1_p004/2	RG:Z:grp1	MD:Z:10
+GCATGCCTGC
++
+3333333333
+@ref1_grp1_p005/2	RG:Z:grp1	MD:Z:10
+GCTTGCATGC
++
+5555555555
+@ref1_grp1_p006/2	RG:Z:grp1	MD:Z:10
+TCAAGCTTGC
++
+7777777777
+@ref1_grp2_p001/2	RG:Z:grp2	MD:Z:10
+AGGTCGACTC
++
+..........
+@ref1_grp2_p002/2	RG:Z:grp2	MD:Z:10
+CTGCAGGTCG
++
+0000000000
+@ref1_grp2_p003/2	RG:Z:grp2	MD:Z:10
+ATGCCTGCAG
++
+2222222222
+@ref1_grp2_p004/2	RG:Z:grp2	MD:Z:10
+TTGCATGCCT
++
+4444444444
+@ref1_grp2_p005/2	RG:Z:grp2	MD:Z:10
+AAGCTTGCAT
++
+6666666666
+@ref1_grp2_p006/2	RG:Z:grp2	MD:Z:10
+ACTCAAGCTT
++
+8888888888
+@ref2_grp3_p001/2	RG:Z:grp3	MD:Z:0T0A0A1C0A0T0G0G0T0C0A1A0G0
+CTGTTTCCTGTGTGA
++
+|||||||||||||||
+@ref2_grp3_p002/2	RG:Z:grp3	MD:Z:15
+CGCCAAGCTATTTAG
++
+}}}}}}}}}}}}}}}
+@ref2_grp3_p003/2	RG:Z:grp3	MD:Z:0A0T0T0C0T0A0T0A0G0T0G0T1A0C0
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001/2	RG:Z:grp1	MD:Z:10
+CACTATAGAA
++
+BBBBBBBBBB
+@ref12_grp2_p001/2	RG:Z:grp2	MD:Z:10
+ATTTAGGTGA
++
+BBBBBBBBBB
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/7.s.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,8 @@
+@ref1_grp2_p002a/1	RG:Z:grp2	MD:Z:10
+CGGTACCCGG
++
+$$$$$$$$$$
+@unaligned_grp3_p001/1	RG:Z:grp3
+CACTCGTTCATGACG
++
+0123456789abcde
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/8.1.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,68 @@
+@ref1_grp1_p001 1:N:0:GT
+CGAGCTCGGT
++
+!!!!!!!!!!
+@ref1_grp1_p002 1:N:0:TT
+CTCGGTACCC
++
+##########
+@ref1_grp1_p003
+GTACCCGGGG
++
+%%%%%%%%%%
+@ref1_grp1_p004
+CCGGGGATCC
++
+''''''''''
+@ref1_grp1_p005
+GGATCCTCTA
++
+))))))))))
+@ref1_grp1_p006
+CCTCTAGAGT
++
+++++++++++
+@ref1_grp2_p001 1:N:0:CA
+AGCTCGGTAC
++
+""""""""""
+@ref1_grp2_p002
+CGGTACCCGG
++
+$$$$$$$$$$
+@ref1_grp2_p003
+ACCCGGGGAT
++
+&&&&&&&&&&
+@ref1_grp2_p004
+GGGGATCCTC
++
+((((((((((
+@ref1_grp2_p005
+ATCCTCTAGA
++
+**********
+@ref1_grp2_p006
+TCTAGAGTCG
++
+,,,,,,,,,,
+@ref2_grp3_p001
+GTGACACTATAGAAT
++
+~~~~~~~~~~~~~~~
+@ref2_grp3_p002
+CTGTTTCCTGTGTGA
++
+{{{{{{{{{{{{{{{
+@ref2_grp3_p003
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001
+TGCAGGCATG
++
+AAAAAAAAAA
+@ref12_grp2_p001
+CAAGCTTGAG
++
+AAAAAAAAAA
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/8.2.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,68 @@
+@ref1_grp1_p001 1:N:0:GT
+GTCGACTCTA
++
+----------
+@ref1_grp1_p002 1:N:0:TT
+GCAGGTCGAC
++
+//////////
+@ref1_grp1_p003
+GCCTGCAGGT
++
+1111111111
+@ref1_grp1_p004
+GCATGCCTGC
++
+3333333333
+@ref1_grp1_p005
+GCTTGCATGC
++
+5555555555
+@ref1_grp1_p006
+TCAAGCTTGC
++
+7777777777
+@ref1_grp2_p001 1:N:0:CA
+AGGTCGACTC
++
+..........
+@ref1_grp2_p002
+CTGCAGGTCG
++
+0000000000
+@ref1_grp2_p003
+ATGCCTGCAG
++
+2222222222
+@ref1_grp2_p004
+TTGCATGCCT
++
+4444444444
+@ref1_grp2_p005
+AAGCTTGCAT
++
+6666666666
+@ref1_grp2_p006
+ACTCAAGCTT
++
+8888888888
+@ref2_grp3_p001
+CTGTTTCCTGTGTGA
++
+|||||||||||||||
+@ref2_grp3_p002
+CGCCAAGCTATTTAG
++
+}}}}}}}}}}}}}}}
+@ref2_grp3_p003
+ACGTMRWSYKVHDBN
++
+0123456789abcd!
+@ref12_grp1_p001
+CACTATAGAA
++
+BBBBBBBBBB
+@ref12_grp2_p001
+ATTTAGGTGA
++
+BBBBBBBBBB
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/8.i.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,12 @@
+@ref1_grp1_p001 1:N:0:GT
+GT
++
+""
+@ref1_grp1_p002 1:N:0:TT
+TT
++
+""
+@ref1_grp2_p001 1:N:0:CA
+CA
++
+cd
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/8.s.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,8 @@
+@ref1_grp2_p002a
+CGGTACCCGG
++
+$$$$$$$$$$
+@unaligned_grp3_p001
+CACTCGTTCATGACG
++
+0123456789abcde
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/9.1.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,28 @@
+@HS2000-355_269:2:1108:12969:26408
+CCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCT
++
+BCBFFFFFGGHHHJJJJIIJGIIIJIJIJIJII990?G=)?0?FH<GEF=CCFEE@G2=C?EE(;CB9;6@6(5??(559<?,9?AB239<2<8<928?8
+@HS2000-355_269:2:2312:2459:22449
+CCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCAAACCCTAACCCTAACCGTAACTCTAACCCTAACCCTATCTCAA
++
+@@@FFBFD8CDHHIBBHIIHIFHH3811)?:)?9):B)B#############################################################
+@HS2000-355_269:1:2307:11945:73421
+TAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCAACCCTAACCCTAACCCTAACCATAACCCTAACCCTAACCCTAACCCTAACC
++
+@@@DFFDEHFHFHHGIJJGIJGHIGEGGHIIFEEHEGHHBBAA;?B@F(B(;;=)==66=?EE>?@7;;A##############################
+@HS2000-355_269:1:1114:7529:75240
+TAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTACCCTAACCCTAACCCTCACCCTAACCCTAACCCTAACCCTAACCCTAACCCCAACCCTACCC
++
+@CCFFFFFDDAFB@GGHFGH@FHIFECBGAEC9CBBF?GFGDGIEGG>GCGI;=(8.6@=A)=???;?6;;66=2;;(,5<AB@5??#############
+@HS2000-355_269:2:2302:12695:6571
+CTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCACA
++
+@@@FBEFDDHHHHIIIIIFFAHGGHHGE??C8C;;FFB>;D>;@DEC@H(=FA@(==@)6=22)7;;?A>AA2;;;?@A#####################
+@HS2000-690_130:8:2104:17804:42012
+ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCCAACCCCAACCCCCACCCCCACCC
++
+CCCFFFFFHGDFHIIJJIIJJIGFHEHIIIJIGIEGDHHIIJJJHIHI=D(BC@FG2;=CEECH@CDF################################
+@HS2000-355_269:2:2213:5874:97462
+ACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTACCCCTAACCCTAACCCAAACCCTAACCCTAACCACAACCCACACCCATATCT
++
+@@@FDFADHDDBFG;CGB;BFHDHGGIG3CGGCC;9?GDF939BFG(B####################################################
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/9.2.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,12 @@
+@HS2000-355_269:1:2307:11945:73421
+AGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGGTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTGGGGTTGGGG
++
+?@@DBDBDFAAC;CBG<CGGII@GHCHGGEHAH@?DGDG2*??DFF*=BFCH'55@;??;6;@#####################################
+@HS2000-355_269:2:1108:12969:26408
+AGGGTTGGGTTAGGGTTGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGGTAGGGTTAGGGTTGGGGTTTGGGGTGGGGTTGGGGGT
++
+@@@FDDFFFFFADHIEHGII@G?GIG?DAHII9B@DFG8BBFCG)=BGEHAAA=AH76?@CC','5=B59(9?A##########################
+@HS2000-690_130:8:1215:11245:58923
+ACACTAACCCGAACCCTAACACAAACCCTAACCCTAACCCTAACCCTAACCCTAACGCGAACACCAACCATAACCCTAACCAACACACTAACGCTAACCC
++
+=>;AAA+AAB6AA12?22?@*:)?1??ABB######################################################################
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/bam2fq.001.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,65 @@
+@HD	VN:1.4	SO:queryname
+@RG	ID:grp1	DS:Group 1	LB:Library 1	SM:Sample
+@RG	ID:grp2	DS:Group 2	LB:Library 2	SM:Sample
+@RG	ID:grp3	DS:Group 3	LB:Library 3	SM:Sample
+@PG	ID:prog1	PN:emacs	CL:emacs	VN:23.1.1
+@CO	The MIT License
+@CO	
+@CO	Copyright (c) 2014, 2015 Genome Research Ltd.
+@CO	
+@CO	Permission is hereby granted, free of charge, to any person obtaining a copy
+@CO	of this software and associated documentation files (the "Software"), to deal
+@CO	in the Software without restriction, including without limitation the rights
+@CO	to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+@CO	copies of the Software, and to permit persons to whom the Software is
+@CO	furnished to do so, subject to the following conditions:
+@CO	
+@CO	The above copyright notice and this permission notice shall be included in
+@CO	all copies or substantial portions of the Software.
+@CO	
+@CO	THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+@CO	IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+@CO	FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+@CO	AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+@CO	LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+@CO	OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+@CO	THE SOFTWARE.
+@SQ	SN:ref1	LN:56	M5:08c04d512d4797d9ba2a156c1daba468
+@SQ	SN:ref2	LN:60	M5:7c35feac7036c1cdef3bee0cc4b21437
+ref1_grp1_p001	99	ref1	1	0	10M	=	25	34	CGAGCTCGGT	!!!!!!!!!!	MD:Z:10	NM:i:0	RG:Z:grp1	BC:Z:ACGT	H0:i:1	aa:A:!	ab:A:~	fa:f:3.14159	za:Z:Hello world!	ha:H:DEADBEEF	ba:B:c,-128,0,127	bb:B:C,0,127,255	bc:B:s,-32768,0,32767	bd:B:S,0,32768,65535	be:B:i,-2147483648,0,2147483647	bf:B:I,0,2147483648,4294967295	bg:B:f,2.71828,6.626e-34,2.9979e+09
+ref1_grp1_p001	147	ref1	25	12	10M	=	1	-34	TAGAGTCGAC	----------	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p002	99	ref1	5	2	10M	=	29	34	CTCGGTACCC	##########	MD:Z:10	NM:i:0	RG:Z:grp1	BC:Z:AATTCCGG	H0:i:1	aa:A:a	ab:A:z	fa:f:4.3597e-18	za:Z:Another string	ha:H:2000AD
+ref1_grp1_p002	147	ref1	29	14	10M	=	5	-34	GTCGACCTGC	//////////	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p003	99	ref1	9	4	10M	=	33	34	GTACCCGGGG	%%%%%%%%%%	MD:Z:10	NM:i:0	fa:f:1.66e-27	RG:Z:grp1
+ref1_grp1_p003	147	ref1	33	16	10M	=	9	-34	ACCTGCAGGC	1111111111	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p004	99	ref1	13	6	10M	=	37	34	CCGGGGATCC	''''''''''	MD:Z:10	NM:i:0	fa:f:1.38e-23	za:Z:xRG:Z:grp2	RG:Z:grp1
+ref1_grp1_p004	147	ref1	37	18	10M	=	13	-34	GCAGGCATGC	3333333333	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p005	99	ref1	17	8	10M	=	41	34	GGATCCTCTA	))))))))))	MD:Z:10	NM:i:0	RG:Z:grp1	ia:i:40000
+ref1_grp1_p005	147	ref1	41	20	10M	=	17	-34	GCATGCAAGC	5555555555	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p006	99	ref1	21	10	10M	=	45	34	CCTCTAGAGT	++++++++++	MD:Z:10	NM:i:0	RG:Z:grp1	ia:i:255
+ref1_grp1_p006	147	ref1	45	22	10M	=	21	-34	GCAAGCTTGA	7777777777	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp2_p001	99	ref1	3	1	8M2S	=	27	34	AGCTCGGTAC	""""""""""	MD:Z:8	NM:i:0	RG:Z:grp2	BC:Z:TGCA	H0:i:1	aa:A:A	ab:A:Z	fa:f:6.67e-11	za:Z:!"$%^&*()	ha:H:CAFE
+ref1_grp2_p001	2147	ref1	11	1	8H2M	=	27	34	AC	""	MD:Z:2	NM:i:0	RG:Z:grp2	BC:Z:TGCA	H0:i:1	aa:A:A	ab:A:Z	fa:f:6.67e-11	za:Z:!"$%^&*()	ha:H:CAFE
+ref1_grp2_p001	147	ref1	27	13	10M	=	3	-34	GAGTCGACCT	..........	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p002	99	ref1	7	3	10M	=	31	34	CGGTACCCGG	$$$$$$$$$$	MD:Z:10	NM:i:0	fa:f:6.022e+23	RG:Z:grp2
+ref1_grp2_p002	147	ref1	31	15	10M	=	7	-34	CGACCTGCAG	0000000000	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p003	99	ref1	11	5	10M	=	35	34	ACCCGGGGAT	&&&&&&&&&&	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:4294967295
+ref1_grp2_p003	147	ref1	35	17	10M	=	11	-34	CTGCAGGCAT	2222222222	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p004	99	ref1	15	7	10M	=	39	34	GGGGATCCTC	((((((((((	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-2147483648
+ref1_grp2_p004	147	ref1	39	19	10M	=	15	-34	AGGCATGCAA	4444444444	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p005	99	ref1	19	9	10M	=	43	34	ATCCTCTAGA	**********	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-1000
+ref1_grp2_p005	147	ref1	43	21	10M	=	19	-34	ATGCAAGCTT	6666666666	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p006	99	ref1	23	11	10M	=	47	34	TCTAGAGTCG	,,,,,,,,,,	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-1
+ref1_grp2_p006	147	ref1	47	23	10M	=	23	-34	AAGCTTGAGT	8888888888	MD:Z:10	NM:i:0	RG:Z:grp2
+ref2_grp3_p001	83	ref2	1	99	15M	=	31	45	ATTCTATAGTGTCAC	~~~~~~~~~~~~~~~	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p001	163	ref2	31	99	15M	=	1	-45	CTGTTTCCTGTGTGA	|||||||||||||||	MD:Z:0T0A0A1C0A0T0G0G0T0C0A1A0G0	NM:i:13	RG:Z:grp3
+ref2_grp3_p002	99	ref2	46	99	15M	=	16	-45	CTGTTTCCTGTGTGA	{{{{{{{{{{{{{{{	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p002	147	ref2	16	99	15M	=	46	45	CTAAATAGCTTGGCG	}}}}}}}}}}}}}}}	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p003	99	ref2	1	99	15M	=	1	15	ACGTMRWSYKVHDBN	0123456789abcd!	MD:Z:1T0T0C0T0A0T0A0G0T0G0T0C0A0C0	NM:i:14	RG:Z:grp3
+ref2_grp3_p003	147	ref2	1	99	15M	=	1	-15	NVHDBMRSWYKACGT	!dcba9876543210	MD:Z:0A0T0T0C0T0A0T0A0G0T0G0T1A0C0	NM:i:14	RG:Z:grp3
+ref12_grp1_p001	97	ref1	36	50	10M	ref2	2	0	TGCAGGCATG	AAAAAAAAAA	MD:Z:10	NM:i:0	RG:Z:grp1
+ref12_grp1_p001	145	ref2	2	50	10M	ref1	36	0	TTCTATAGTG	BBBBBBBBBB	MD:Z:10	NM:i:0	RG:Z:grp1
+ref12_grp2_p001	97	ref1	46	50	10M	ref2	12	0	CAAGCTTGAG	AAAAAAAAAA	MD:Z:10	NM:i:0	RG:Z:grp2
+ref12_grp2_p001	145	ref2	12	50	10M	ref1	46	0	TCACCTAAAT	BBBBBBBBBB	MD:Z:10	NM:i:0	RG:Z:grp2
+unaligned_grp3_p001	77	*	0	0	*	*	0	0	CACTCGTTCATGACG	0123456789abcde	RG:Z:grp3
+unaligned_grp3_p001	141	*	0	0	*	*	0	0	GAAAGTGAGGAGGTG	edcba9876543210	RG:Z:grp3
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/bam2fq.002.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,66 @@
+@HD	VN:1.4	SO:queryname
+@RG	ID:grp1	DS:Group 1	LB:Library 1	SM:Sample
+@RG	ID:grp2	DS:Group 2	LB:Library 2	SM:Sample
+@RG	ID:grp3	DS:Group 3	LB:Library 3	SM:Sample
+@PG	ID:prog1	PN:emacs	CL:emacs	VN:23.1.1
+@CO	The MIT License
+@CO	
+@CO	Copyright (c) 2014, 2015 Genome Research Ltd.
+@CO	
+@CO	Permission is hereby granted, free of charge, to any person obtaining a copy
+@CO	of this software and associated documentation files (the "Software"), to deal
+@CO	in the Software without restriction, including without limitation the rights
+@CO	to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+@CO	copies of the Software, and to permit persons to whom the Software is
+@CO	furnished to do so, subject to the following conditions:
+@CO	
+@CO	The above copyright notice and this permission notice shall be included in
+@CO	all copies or substantial portions of the Software.
+@CO	
+@CO	THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+@CO	IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+@CO	FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+@CO	AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+@CO	LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+@CO	OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+@CO	THE SOFTWARE.
+@SQ	SN:ref1	LN:56	M5:08c04d512d4797d9ba2a156c1daba468
+@SQ	SN:ref2	LN:60	M5:7c35feac7036c1cdef3bee0cc4b21437
+ref1_grp1_p001	99	ref1	1	0	10M	=	25	34	CGAGCTCGGT	!!!!!!!!!!	MD:Z:10	NM:i:0	RG:Z:grp1	BC:Z:ACGT	H0:i:1	aa:A:!	ab:A:~	fa:f:3.14159	za:Z:Hello world!	ha:H:DEADBEEF	ba:B:c,-128,0,127	bb:B:C,0,127,255	bc:B:s,-32768,0,32767	bd:B:S,0,32768,65535	be:B:i,-2147483648,0,2147483647	bf:B:I,0,2147483648,4294967295	bg:B:f,2.71828,6.626e-34,2.9979e+09
+ref1_grp1_p001	147	ref1	25	12	10M	=	1	-34	TAGAGTCGAC	----------	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p002	99	ref1	5	2	10M	=	29	34	CTCGGTACCC	##########	MD:Z:10	NM:i:0	RG:Z:grp1	BC:Z:AATTCCGG	H0:i:1	aa:A:a	ab:A:z	fa:f:4.3597e-18	za:Z:Another string	ha:H:2000AD
+ref1_grp1_p002	147	ref1	29	14	10M	=	5	-34	GTCGACCTGC	//////////	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p003	99	ref1	9	4	10M	=	33	34	GTACCCGGGG	%%%%%%%%%%	MD:Z:10	NM:i:0	fa:f:1.66e-27	RG:Z:grp1
+ref1_grp1_p003	147	ref1	33	16	10M	=	9	-34	ACCTGCAGGC	1111111111	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p004	99	ref1	13	6	10M	=	37	34	CCGGGGATCC	''''''''''	MD:Z:10	NM:i:0	fa:f:1.38e-23	za:Z:xRG:Z:grp2	RG:Z:grp1
+ref1_grp1_p004	147	ref1	37	18	10M	=	13	-34	GCAGGCATGC	3333333333	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p005	99	ref1	17	8	10M	=	41	34	GGATCCTCTA	))))))))))	MD:Z:10	NM:i:0	RG:Z:grp1	ia:i:40000
+ref1_grp1_p005	147	ref1	41	20	10M	=	17	-34	GCATGCAAGC	5555555555	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p006	99	ref1	21	10	10M	=	45	34	CCTCTAGAGT	++++++++++	MD:Z:10	NM:i:0	RG:Z:grp1	ia:i:255
+ref1_grp1_p006	147	ref1	45	22	10M	=	21	-34	GCAAGCTTGA	7777777777	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp2_p001	99	ref1	3	1	8M2S	=	27	34	AGCTCGGTAC	""""""""""	MD:Z:8	NM:i:0	RG:Z:grp2	BC:Z:TGCA	H0:i:1	aa:A:A	ab:A:Z	fa:f:6.67e-11	za:Z:!"$%^&*()	ha:H:CAFE
+ref1_grp2_p001	2147	ref1	11	1	8H2M	=	27	34	AC	""	MD:Z:2	NM:i:0	RG:Z:grp2	BC:Z:TGCA	H0:i:1	aa:A:A	ab:A:Z	fa:f:6.67e-11	za:Z:!"$%^&*()	ha:H:CAFE
+ref1_grp2_p001	147	ref1	27	13	10M	=	3	-34	GAGTCGACCT	..........	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p002a	99	ref1	7	3	10M	=	31	34	CGGTACCCGG	$$$$$$$$$$	MD:Z:10	NM:i:0	fa:f:6.022e+23	RG:Z:grp2
+ref1_grp2_p002	99	ref1	7	3	10M	=	31	34	CGGTACCCGG	$$$$$$$$$$	MD:Z:10	NM:i:0	fa:f:6.022e+23	RG:Z:grp2
+ref1_grp2_p002	147	ref1	31	15	10M	=	7	-34	CGACCTGCAG	0000000000	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p003	99	ref1	11	5	10M	=	35	34	ACCCGGGGAT	&&&&&&&&&&	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:4294967295
+ref1_grp2_p003	147	ref1	35	17	10M	=	11	-34	CTGCAGGCAT	2222222222	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p004	99	ref1	15	7	10M	=	39	34	GGGGATCCTC	((((((((((	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-2147483648
+ref1_grp2_p004	147	ref1	39	19	10M	=	15	-34	AGGCATGCAA	4444444444	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p005	99	ref1	19	9	10M	=	43	34	ATCCTCTAGA	**********	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-1000
+ref1_grp2_p005	147	ref1	43	21	10M	=	19	-34	ATGCAAGCTT	6666666666	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p006	99	ref1	23	11	10M	=	47	34	TCTAGAGTCG	,,,,,,,,,,	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-1
+ref1_grp2_p006	147	ref1	47	23	10M	=	23	-34	AAGCTTGAGT	8888888888	MD:Z:10	NM:i:0	RG:Z:grp2
+ref2_grp3_p001	83	ref2	1	99	15M	=	31	45	ATTCTATAGTGTCAC	~~~~~~~~~~~~~~~	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p001	163	ref2	31	99	15M	=	1	-45	CTGTTTCCTGTGTGA	|||||||||||||||	MD:Z:0T0A0A1C0A0T0G0G0T0C0A1A0G0	NM:i:13	RG:Z:grp3
+ref2_grp3_p002	99	ref2	46	99	15M	=	16	-45	CTGTTTCCTGTGTGA	{{{{{{{{{{{{{{{	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p002	147	ref2	16	99	15M	=	46	45	CTAAATAGCTTGGCG	}}}}}}}}}}}}}}}	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p003	99	ref2	1	99	15M	=	1	15	ACGTMRWSYKVHDBN	0123456789abcd!	MD:Z:1T0T0C0T0A0T0A0G0T0G0T0C0A0C0	NM:i:14	RG:Z:grp3
+ref2_grp3_p003	147	ref2	1	99	15M	=	1	-15	NVHDBMRSWYKACGT	!dcba9876543210	MD:Z:0A0T0T0C0T0A0T0A0G0T0G0T1A0C0	NM:i:14	RG:Z:grp3
+ref12_grp1_p001	97	ref1	36	50	10M	ref2	2	0	TGCAGGCATG	AAAAAAAAAA	MD:Z:10	NM:i:0	RG:Z:grp1
+ref12_grp1_p001	145	ref2	2	50	10M	ref1	36	0	TTCTATAGTG	BBBBBBBBBB	MD:Z:10	NM:i:0	RG:Z:grp1
+ref12_grp2_p001	97	ref1	46	50	10M	ref2	12	0	CAAGCTTGAG	AAAAAAAAAA	MD:Z:10	NM:i:0	RG:Z:grp2
+ref12_grp2_p001	145	ref2	12	50	10M	ref1	46	0	TCACCTAAAT	BBBBBBBBBB	MD:Z:10	NM:i:0	RG:Z:grp2
+unaligned_grp3_p001	77	*	0	0	*	*	0	0	CACTCGTTCATGACG	0123456789abcde	RG:Z:grp3
+unaligned_grp3_p001	141	*	0	0	*	*	0	0	GAAAGTGAGGAGGTG	edcba9876543210	RG:Z:grp3
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/bam2fq.003.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,65 @@
+@HD	VN:1.4	SO:queryname
+@RG	ID:grp1	DS:Group 1	LB:Library 1	SM:Sample
+@RG	ID:grp2	DS:Group 2	LB:Library 2	SM:Sample
+@RG	ID:grp3	DS:Group 3	LB:Library 3	SM:Sample
+@PG	ID:prog1	PN:emacs	CL:emacs	VN:23.1.1
+@CO	The MIT License
+@CO	
+@CO	Copyright (c) 2014, 2015 Genome Research Ltd.
+@CO	
+@CO	Permission is hereby granted, free of charge, to any person obtaining a copy
+@CO	of this software and associated documentation files (the "Software"), to deal
+@CO	in the Software without restriction, including without limitation the rights
+@CO	to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+@CO	copies of the Software, and to permit persons to whom the Software is
+@CO	furnished to do so, subject to the following conditions:
+@CO	
+@CO	The above copyright notice and this permission notice shall be included in
+@CO	all copies or substantial portions of the Software.
+@CO	
+@CO	THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+@CO	IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+@CO	FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+@CO	AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+@CO	LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+@CO	OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+@CO	THE SOFTWARE.
+@SQ	SN:ref1	LN:56	M5:08c04d512d4797d9ba2a156c1daba468
+@SQ	SN:ref2	LN:60	M5:7c35feac7036c1cdef3bee0cc4b21437
+ref1_grp1_p001	99	ref1	1	0	10M	=	25	34	CGAGCTCGGT	!!!!!!!!!!	MD:Z:10	NM:i:0	RG:Z:grp1	BC:Z:ACGT	H0:i:1	aa:A:!	ab:A:~	fa:f:3.14159	za:Z:Hello world!	ha:H:DEADBEEF	ba:B:c,-128,0,127	bb:B:C,0,127,255	bc:B:s,-32768,0,32767	bd:B:S,0,32768,65535	be:B:i,-2147483648,0,2147483647	bf:B:I,0,2147483648,4294967295	bg:B:f,2.71828,6.626e-34,2.9979e+09
+ref1_grp1_p001	147	ref1	25	12	10M	=	1	-34	TAGAGTCGAC	----------	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p002	99	ref1	5	2	10M	=	29	34	CTCGGTACCC	##########	MD:Z:10	NM:i:0	RG:Z:grp1	BC:Z:AATTCCGG	H0:i:1	aa:A:a	ab:A:z	fa:f:4.3597e-18	za:Z:Another string	ha:H:2000AD
+ref1_grp1_p002	147	ref1	29	14	10M	=	5	-34	GTCGACCTGC	//////////	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p003	99	ref1	9	4	10M	=	33	34	GTACCCGGGG	%%%%%%%%%%	MD:Z:10	NM:i:0	fa:f:1.66e-27	RG:Z:grp1
+ref1_grp1_p003	147	ref1	33	16	10M	=	9	-34	ACCTGCAGGC	1111111111	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p004	99	ref1	13	6	10M	=	37	34	CCGGGGATCC	''''''''''	MD:Z:10	NM:i:0	fa:f:1.38e-23	za:Z:xRG:Z:grp2	RG:Z:grp1
+ref1_grp1_p004	147	ref1	37	18	10M	=	13	-34	GCAGGCATGC	3333333333	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p005	99	ref1	17	8	10M	=	41	34	GGATCCTCTA	))))))))))	MD:Z:10	NM:i:0	RG:Z:grp1	ia:i:40000
+ref1_grp1_p005	147	ref1	41	20	10M	=	17	-34	GCATGCAAGC	5555555555	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p006	99	ref1	21	10	10M	=	45	34	CCTCTAGAGT	++++++++++	MD:Z:10	NM:i:0	RG:Z:grp1	ia:i:255
+ref1_grp1_p006	147	ref1	45	22	10M	=	21	-34	GCAAGCTTGA	7777777777	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp2_p001	99	ref1	3	1	8M2S	=	27	34	AGCTCGGTAC	""""""""""	MD:Z:8	NM:i:0	RG:Z:grp2	BC:Z:TGCA	H0:i:1	aa:A:A	ab:A:Z	fa:f:6.67e-11	za:Z:!"$%^&*()	ha:H:CAFE
+ref1_grp2_p001	2147	ref1	11	1	8H2M	=	27	34	AC	""	MD:Z:2	NM:i:0	RG:Z:grp2	BC:Z:TGCA	H0:i:1	aa:A:A	ab:A:Z	fa:f:6.67e-11	za:Z:!"$%^&*()	ha:H:CAFE
+ref1_grp2_p001	147	ref1	27	13	10M	=	3	-34	GAGTCGACCT	..........	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p002a	99	ref1	7	3	10M	=	31	34	CGGTACCCGG	$$$$$$$$$$	MD:Z:10	NM:i:0	fa:f:6.022e+23	RG:Z:grp2
+ref1_grp2_p002	99	ref1	7	3	10M	=	31	34	CGGTACCCGG	$$$$$$$$$$	MD:Z:10	NM:i:0	fa:f:6.022e+23	RG:Z:grp2
+ref1_grp2_p002	147	ref1	31	15	10M	=	7	-34	CGACCTGCAG	0000000000	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p003	99	ref1	11	5	10M	=	35	34	ACCCGGGGAT	&&&&&&&&&&	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:4294967295
+ref1_grp2_p003	147	ref1	35	17	10M	=	11	-34	CTGCAGGCAT	2222222222	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p004	99	ref1	15	7	10M	=	39	34	GGGGATCCTC	((((((((((	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-2147483648
+ref1_grp2_p004	147	ref1	39	19	10M	=	15	-34	AGGCATGCAA	4444444444	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p005	99	ref1	19	9	10M	=	43	34	ATCCTCTAGA	**********	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-1000
+ref1_grp2_p005	147	ref1	43	21	10M	=	19	-34	ATGCAAGCTT	6666666666	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p006	99	ref1	23	11	10M	=	47	34	TCTAGAGTCG	,,,,,,,,,,	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-1
+ref1_grp2_p006	147	ref1	47	23	10M	=	23	-34	AAGCTTGAGT	8888888888	MD:Z:10	NM:i:0	RG:Z:grp2
+ref2_grp3_p001	83	ref2	1	99	15M	=	31	45	ATTCTATAGTGTCAC	~~~~~~~~~~~~~~~	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p001	163	ref2	31	99	15M	=	1	-45	CTGTTTCCTGTGTGA	|||||||||||||||	MD:Z:0T0A0A1C0A0T0G0G0T0C0A1A0G0	NM:i:13	RG:Z:grp3
+ref2_grp3_p002	99	ref2	46	99	15M	=	16	-45	CTGTTTCCTGTGTGA	{{{{{{{{{{{{{{{	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p002	147	ref2	16	99	15M	=	46	45	CTAAATAGCTTGGCG	}}}}}}}}}}}}}}}	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p003	99	ref2	1	99	15M	=	1	15	ACGTMRWSYKVHDBN	0123456789abcd!	MD:Z:1T0T0C0T0A0T0A0G0T0G0T0C0A0C0	NM:i:14	RG:Z:grp3
+ref2_grp3_p003	147	ref2	1	99	15M	=	1	-15	NVHDBMRSWYKACGT	!dcba9876543210	MD:Z:0A0T0T0C0T0A0T0A0G0T0G0T1A0C0	NM:i:14	RG:Z:grp3
+ref12_grp1_p001	97	ref1	36	50	10M	ref2	2	0	TGCAGGCATG	AAAAAAAAAA	MD:Z:10	NM:i:0	RG:Z:grp1
+ref12_grp1_p001	145	ref2	2	50	10M	ref1	36	0	TTCTATAGTG	BBBBBBBBBB	MD:Z:10	NM:i:0	RG:Z:grp1
+ref12_grp2_p001	97	ref1	46	50	10M	ref2	12	0	CAAGCTTGAG	AAAAAAAAAA	MD:Z:10	NM:i:0	RG:Z:grp2
+ref12_grp2_p001	145	ref2	12	50	10M	ref1	46	0	TCACCTAAAT	BBBBBBBBBB	MD:Z:10	NM:i:0	RG:Z:grp2
+unaligned_grp3_p001	77	*	0	0	*	*	0	0	CACTCGTTCATGACG	0123456789abcde	RG:Z:grp3
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/bam2fq.004.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,65 @@
+@HD	VN:1.4	SO:queryname
+@RG	ID:grp1	DS:Group 1	LB:Library 1	SM:Sample
+@RG	ID:grp2	DS:Group 2	LB:Library 2	SM:Sample
+@RG	ID:grp3	DS:Group 3	LB:Library 3	SM:Sample
+@PG	ID:prog1	PN:emacs	CL:emacs	VN:23.1.1
+@CO	The MIT License
+@CO	
+@CO	Copyright (c) 2014, 2015 Genome Research Ltd.
+@CO	
+@CO	Permission is hereby granted, free of charge, to any person obtaining a copy
+@CO	of this software and associated documentation files (the "Software"), to deal
+@CO	in the Software without restriction, including without limitation the rights
+@CO	to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+@CO	copies of the Software, and to permit persons to whom the Software is
+@CO	furnished to do so, subject to the following conditions:
+@CO	
+@CO	The above copyright notice and this permission notice shall be included in
+@CO	all copies or substantial portions of the Software.
+@CO	
+@CO	THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+@CO	IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+@CO	FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+@CO	AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+@CO	LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+@CO	OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+@CO	THE SOFTWARE.
+@SQ	SN:ref1	LN:56	M5:08c04d512d4797d9ba2a156c1daba468
+@SQ	SN:ref2	LN:60	M5:7c35feac7036c1cdef3bee0cc4b21437
+ref1_grp1_p001	99	ref1	1	0	10M	=	25	34	CGAGCTCGGT	!!!!!!!!!!	MD:Z:10	NM:i:0	RG:Z:grp1	BC:Z:ACGT	H0:i:1	aa:A:!	ab:A:~	fa:f:3.14159	za:Z:Hello world!	ha:H:DEADBEEF	ba:B:c,-128,0,127	bb:B:C,0,127,255	bc:B:s,-32768,0,32767	bd:B:S,0,32768,65535	be:B:i,-2147483648,0,2147483647	bf:B:I,0,2147483648,4294967295	bg:B:f,2.71828,6.626e-34,2.9979e+09
+ref1_grp1_p001	147	ref1	25	12	10M	=	1	-34	TAGAGTCGAC	----------	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p002	99	ref1	5	2	10M	=	29	34	CTCGGTACCC	##########	MD:Z:10	NM:i:0	RG:Z:grp1	BC:Z:AATTCCGG	H0:i:1	aa:A:a	ab:A:z	fa:f:4.3597e-18	za:Z:Another string	ha:H:2000AD
+ref1_grp1_p002	147	ref1	29	14	10M	=	5	-34	GTCGACCTGC	//////////	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p003	99	ref1	9	4	10M	=	33	34	GTACCCGGGG	%%%%%%%%%%	MD:Z:10	NM:i:0	fa:f:1.66e-27	RG:Z:grp1
+ref1_grp1_p003	147	ref1	33	16	10M	=	9	-34	ACCTGCAGGC	1111111111	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p004	99	ref1	13	6	10M	=	37	34	CCGGGGATCC	''''''''''	MD:Z:10	NM:i:0	fa:f:1.38e-23	za:Z:xRG:Z:grp2	RG:Z:grp1
+ref1_grp1_p004	147	ref1	37	18	10M	=	13	-34	GCAGGCATGC	3333333333	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p005	99	ref1	17	8	10M	=	41	34	GGATCCTCTA	))))))))))	MD:Z:10	NM:i:0	RG:Z:grp1	ia:i:40000
+ref1_grp1_p005	147	ref1	41	20	10M	=	17	-34	GCATGCAAGC	5555555555	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p006	99	ref1	21	10	10M	=	45	34	CCTCTAGAGT	++++++++++	MD:Z:10	NM:i:0	RG:Z:grp1	ia:i:255
+ref1_grp1_p006	147	ref1	45	22	10M	=	21	-34	GCAAGCTTGA	7777777777	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp2_p001	99	ref1	3	1	8M2S	=	27	34	AGCTCGGTAC	""""""""""	MD:Z:8	NM:i:0	RG:Z:grp2	BC:Z:TGCA	QT:Z:abcd   H0:i:1	aa:A:A	ab:A:Z	fa:f:6.67e-11	za:Z:!"$%^&*()	ha:H:CAFE
+ref1_grp2_p001	2147	ref1	11	1	8H2M	=	27	34	AC	""	MD:Z:2	NM:i:0	RG:Z:grp2	BC:Z:TGCA	H0:i:1	aa:A:A	ab:A:Z	fa:f:6.67e-11	za:Z:!"$%^&*()	ha:H:CAFE
+ref1_grp2_p001	147	ref1	27	13	10M	=	3	-34	GAGTCGACCT	..........	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p002a	99	ref1	7	3	10M	=	31	34	CGGTACCCGG	$$$$$$$$$$	MD:Z:10	NM:i:0	fa:f:6.022e+23	RG:Z:grp2
+ref1_grp2_p002	99	ref1	7	3	10M	=	31	34	CGGTACCCGG	$$$$$$$$$$	MD:Z:10	NM:i:0	fa:f:6.022e+23	RG:Z:grp2
+ref1_grp2_p002	147	ref1	31	15	10M	=	7	-34	CGACCTGCAG	0000000000	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p003	99	ref1	11	5	10M	=	35	34	ACCCGGGGAT	&&&&&&&&&&	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:4294967295
+ref1_grp2_p003	147	ref1	35	17	10M	=	11	-34	CTGCAGGCAT	2222222222	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p004	99	ref1	15	7	10M	=	39	34	GGGGATCCTC	((((((((((	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-2147483648
+ref1_grp2_p004	147	ref1	39	19	10M	=	15	-34	AGGCATGCAA	4444444444	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p005	99	ref1	19	9	10M	=	43	34	ATCCTCTAGA	**********	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-1000
+ref1_grp2_p005	147	ref1	43	21	10M	=	19	-34	ATGCAAGCTT	6666666666	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p006	99	ref1	23	11	10M	=	47	34	TCTAGAGTCG	,,,,,,,,,,	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-1
+ref1_grp2_p006	147	ref1	47	23	10M	=	23	-34	AAGCTTGAGT	8888888888	MD:Z:10	NM:i:0	RG:Z:grp2
+ref2_grp3_p001	83	ref2	1	99	15M	=	31	45	ATTCTATAGTGTCAC	~~~~~~~~~~~~~~~	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p001	163	ref2	31	99	15M	=	1	-45	CTGTTTCCTGTGTGA	|||||||||||||||	MD:Z:0T0A0A1C0A0T0G0G0T0C0A1A0G0	NM:i:13	RG:Z:grp3
+ref2_grp3_p002	99	ref2	46	99	15M	=	16	-45	CTGTTTCCTGTGTGA	{{{{{{{{{{{{{{{	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p002	147	ref2	16	99	15M	=	46	45	CTAAATAGCTTGGCG	}}}}}}}}}}}}}}}	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p003	99	ref2	1	99	15M	=	1	15	ACGTMRWSYKVHDBN	0123456789abcd!	MD:Z:1T0T0C0T0A0T0A0G0T0G0T0C0A0C0	NM:i:14	RG:Z:grp3
+ref2_grp3_p003	147	ref2	1	99	15M	=	1	-15	NVHDBMRSWYKACGT	!dcba9876543210	MD:Z:0A0T0T0C0T0A0T0A0G0T0G0T1A0C0	NM:i:14	RG:Z:grp3
+ref12_grp1_p001	97	ref1	36	50	10M	ref2	2	0	TGCAGGCATG	AAAAAAAAAA	MD:Z:10	NM:i:0	RG:Z:grp1
+ref12_grp1_p001	145	ref2	2	50	10M	ref1	36	0	TTCTATAGTG	BBBBBBBBBB	MD:Z:10	NM:i:0	RG:Z:grp1
+ref12_grp2_p001	97	ref1	46	50	10M	ref2	12	0	CAAGCTTGAG	AAAAAAAAAA	MD:Z:10	NM:i:0	RG:Z:grp2
+ref12_grp2_p001	145	ref2	12	50	10M	ref1	46	0	TCACCTAAAT	BBBBBBBBBB	MD:Z:10	NM:i:0	RG:Z:grp2
+unaligned_grp3_p001	77	*	0	0	*	*	0	0	CACTCGTTCATGACG	0123456789abcde	RG:Z:grp3
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/bam2fq.005.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,65 @@
+@HD	VN:1.4	SO:queryname
+@RG	ID:grp1	DS:Group 1	LB:Library 1	SM:Sample
+@RG	ID:grp2	DS:Group 2	LB:Library 2	SM:Sample
+@RG	ID:grp3	DS:Group 3	LB:Library 3	SM:Sample
+@PG	ID:prog1	PN:emacs	CL:emacs	VN:23.1.1
+@CO	The MIT License
+@CO	
+@CO	Copyright (c) 2014, 2015 Genome Research Ltd.
+@CO	
+@CO	Permission is hereby granted, free of charge, to any person obtaining a copy
+@CO	of this software and associated documentation files (the "Software"), to deal
+@CO	in the Software without restriction, including without limitation the rights
+@CO	to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+@CO	copies of the Software, and to permit persons to whom the Software is
+@CO	furnished to do so, subject to the following conditions:
+@CO	
+@CO	The above copyright notice and this permission notice shall be included in
+@CO	all copies or substantial portions of the Software.
+@CO	
+@CO	THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+@CO	IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+@CO	FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+@CO	AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+@CO	LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+@CO	OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+@CO	THE SOFTWARE.
+@SQ	SN:ref1	LN:56	M5:08c04d512d4797d9ba2a156c1daba468
+@SQ	SN:ref2	LN:60	M5:7c35feac7036c1cdef3bee0cc4b21437
+ref1_grp1_p001	99	ref1	1	0	10M	=	25	34	CGAGCTCGGT	!!!!!!!!!!	MD:Z:10	NM:i:0	RG:Z:grp1	BC:Z:AC-GT	H0:i:1	aa:A:!	ab:A:~	fa:f:3.14159	za:Z:Hello world!	ha:H:DEADBEEF	ba:B:c,-128,0,127	bb:B:C,0,127,255	bc:B:s,-32768,0,32767	bd:B:S,0,32768,65535	be:B:i,-2147483648,0,2147483647	bf:B:I,0,2147483648,4294967295	bg:B:f,2.71828,6.626e-34,2.9979e+09
+ref1_grp1_p001	147	ref1	25	12	10M	=	1	-34	TAGAGTCGAC	----------	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p002	99	ref1	5	2	10M	=	29	34	CTCGGTACCC	##########	MD:Z:10	NM:i:0	RG:Z:grp1	BC:Z:AATT+CCGG	H0:i:1	aa:A:a	ab:A:z	fa:f:4.3597e-18	za:Z:Another string	ha:H:2000AD
+ref1_grp1_p002	147	ref1	29	14	10M	=	5	-34	GTCGACCTGC	//////////	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p003	99	ref1	9	4	10M	=	33	34	GTACCCGGGG	%%%%%%%%%%	MD:Z:10	NM:i:0	fa:f:1.66e-27	RG:Z:grp1
+ref1_grp1_p003	147	ref1	33	16	10M	=	9	-34	ACCTGCAGGC	1111111111	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p004	99	ref1	13	6	10M	=	37	34	CCGGGGATCC	''''''''''	MD:Z:10	NM:i:0	fa:f:1.38e-23	za:Z:xRG:Z:grp2	RG:Z:grp1
+ref1_grp1_p004	147	ref1	37	18	10M	=	13	-34	GCAGGCATGC	3333333333	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p005	99	ref1	17	8	10M	=	41	34	GGATCCTCTA	))))))))))	MD:Z:10	NM:i:0	RG:Z:grp1	ia:i:40000
+ref1_grp1_p005	147	ref1	41	20	10M	=	17	-34	GCATGCAAGC	5555555555	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p006	99	ref1	21	10	10M	=	45	34	CCTCTAGAGT	++++++++++	MD:Z:10	NM:i:0	RG:Z:grp1	ia:i:255
+ref1_grp1_p006	147	ref1	45	22	10M	=	21	-34	GCAAGCTTGA	7777777777	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp2_p001	99	ref1	3	1	8M2S	=	27	34	AGCTCGGTAC	""""""""""	MD:Z:8	NM:i:0	RG:Z:grp2	BC:Z:TG+CA	QT:Z:ab+cd	H0:i:1	aa:A:A	ab:A:Z	fa:f:6.67e-11	za:Z:!"$%^&*()	ha:H:CAFE
+ref1_grp2_p001	2147	ref1	11	1	8H2M	=	27	34	AC	""	MD:Z:2	NM:i:0	RG:Z:grp2	BC:Z:TG-CA	H0:i:1	aa:A:A	ab:A:Z	fa:f:6.67e-11	za:Z:!"$%^&*()	ha:H:CAFE
+ref1_grp2_p001	147	ref1	27	13	10M	=	3	-34	GAGTCGACCT	..........	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p002a	99	ref1	7	3	10M	=	31	34	CGGTACCCGG	$$$$$$$$$$	MD:Z:10	NM:i:0	fa:f:6.022e+23	RG:Z:grp2
+ref1_grp2_p002	99	ref1	7	3	10M	=	31	34	CGGTACCCGG	$$$$$$$$$$	MD:Z:10	NM:i:0	fa:f:6.022e+23	RG:Z:grp2
+ref1_grp2_p002	147	ref1	31	15	10M	=	7	-34	CGACCTGCAG	0000000000	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p003	99	ref1	11	5	10M	=	35	34	ACCCGGGGAT	&&&&&&&&&&	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:4294967295
+ref1_grp2_p003	147	ref1	35	17	10M	=	11	-34	CTGCAGGCAT	2222222222	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p004	99	ref1	15	7	10M	=	39	34	GGGGATCCTC	((((((((((	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-2147483648
+ref1_grp2_p004	147	ref1	39	19	10M	=	15	-34	AGGCATGCAA	4444444444	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p005	99	ref1	19	9	10M	=	43	34	ATCCTCTAGA	**********	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-1000
+ref1_grp2_p005	147	ref1	43	21	10M	=	19	-34	ATGCAAGCTT	6666666666	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p006	99	ref1	23	11	10M	=	47	34	TCTAGAGTCG	,,,,,,,,,,	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-1
+ref1_grp2_p006	147	ref1	47	23	10M	=	23	-34	AAGCTTGAGT	8888888888	MD:Z:10	NM:i:0	RG:Z:grp2
+ref2_grp3_p001	83	ref2	1	99	15M	=	31	45	ATTCTATAGTGTCAC	~~~~~~~~~~~~~~~	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p001	163	ref2	31	99	15M	=	1	-45	CTGTTTCCTGTGTGA	|||||||||||||||	MD:Z:0T0A0A1C0A0T0G0G0T0C0A1A0G0	NM:i:13	RG:Z:grp3
+ref2_grp3_p002	99	ref2	46	99	15M	=	16	-45	CTGTTTCCTGTGTGA	{{{{{{{{{{{{{{{	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p002	147	ref2	16	99	15M	=	46	45	CTAAATAGCTTGGCG	}}}}}}}}}}}}}}}	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p003	99	ref2	1	99	15M	=	1	15	ACGTMRWSYKVHDBN	0123456789abcd!	MD:Z:1T0T0C0T0A0T0A0G0T0G0T0C0A0C0	NM:i:14	RG:Z:grp3
+ref2_grp3_p003	147	ref2	1	99	15M	=	1	-15	NVHDBMRSWYKACGT	!dcba9876543210	MD:Z:0A0T0T0C0T0A0T0A0G0T0G0T1A0C0	NM:i:14	RG:Z:grp3
+ref12_grp1_p001	97	ref1	36	50	10M	ref2	2	0	TGCAGGCATG	AAAAAAAAAA	MD:Z:10	NM:i:0	RG:Z:grp1
+ref12_grp1_p001	145	ref2	2	50	10M	ref1	36	0	TTCTATAGTG	BBBBBBBBBB	MD:Z:10	NM:i:0	RG:Z:grp1
+ref12_grp2_p001	97	ref1	46	50	10M	ref2	12	0	CAAGCTTGAG	AAAAAAAAAA	MD:Z:10	NM:i:0	RG:Z:grp2
+ref12_grp2_p001	145	ref2	12	50	10M	ref1	46	0	TCACCTAAAT	BBBBBBBBBB	MD:Z:10	NM:i:0	RG:Z:grp2
+unaligned_grp3_p001	77	*	0	0	*	*	0	0	CACTCGTTCATGACG	0123456789abcde	RG:Z:grp3
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/bam2fq.010.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,65 @@
+@HD	VN:1.4	SO:queryname
+@RG	ID:grp1	DS:Group 1	LB:Library 1	SM:Sample
+@RG	ID:grp2	DS:Group 2	LB:Library 2	SM:Sample
+@RG	ID:grp3	DS:Group 3	LB:Library 3	SM:Sample
+@PG	ID:prog1	PN:emacs	CL:emacs	VN:23.1.1
+@CO	The MIT License
+@CO	
+@CO	Copyright (c) 2014, 2015 Genome Research Ltd.
+@CO	
+@CO	Permission is hereby granted, free of charge, to any person obtaining a copy
+@CO	of this software and associated documentation files (the "Software"), to deal
+@CO	in the Software without restriction, including without limitation the rights
+@CO	to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+@CO	copies of the Software, and to permit persons to whom the Software is
+@CO	furnished to do so, subject to the following conditions:
+@CO	
+@CO	The above copyright notice and this permission notice shall be included in
+@CO	all copies or substantial portions of the Software.
+@CO	
+@CO	THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+@CO	IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+@CO	FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+@CO	AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+@CO	LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+@CO	OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+@CO	THE SOFTWARE.
+@SQ	SN:ref1	LN:56	M5:08c04d512d4797d9ba2a156c1daba468
+@SQ	SN:ref2	LN:60	M5:7c35feac7036c1cdef3bee0cc4b21437
+ref1_grp1_p001	99	ref1	1	0	10M	=	25	34	CGAGCTCGGT	!!!!!!!!!!	MD:Z:10	NM:i:0	RG:Z:grp1	BC:Z:ACGT	H0:i:1	aa:A:!	ab:A:~	fa:f:3.14159	za:Z:Hello world!	ha:H:DEADBEEF	ba:B:c,-128,0,127	bb:B:C,0,127,255	bc:B:s,-32768,0,32767	bd:B:S,0,32768,65535	be:B:i,-2147483648,0,2147483647	bf:B:I,0,2147483648,4294967295	bg:B:f,2.71828,6.626e-34,2.9979e+09
+ref1_grp1_p001	147	ref1	25	12	10M	=	1	-34	TAGAGTCGAC	----------	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p002	99	ref1	5	2	10M	=	29	34	CTCGGTACCC	##########	MD:Z:10	NM:i:0	RG:Z:grp1	BC:Z:AATTCCGG	H0:i:1	aa:A:a	ab:A:z	fa:f:4.3597e-18	za:Z:Another string	ha:H:2000AD
+ref1_grp1_p002	147	ref1	29	14	10M	=	5	-34	GTCGACCTGC	//////////	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p003	99	ref1	9	4	10M	=	33	34	GTACCCGGGG	%%%%%%%%%%	MD:Z:10	NM:i:0	fa:f:1.66e-27	RG:Z:grp1
+ref1_grp1_p003	147	ref1	33	16	10M	=	9	-34	ACCTGCAGGC	1111111111	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p004	99	ref1	13	6	10M	=	37	34	CCGGGGATCC	''''''''''	MD:Z:10	NM:i:0	fa:f:1.38e-23	za:Z:xRG:Z:grp2	RG:Z:grp1
+ref1_grp1_p004	147	ref1	37	18	10M	=	13	-34	GCAGGCATGC	3333333333	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p005	99	ref1	17	8	10M	=	41	34	GGATCCTCTA	))))))))))	MD:Z:10	NM:i:0	RG:Z:grp1	ia:i:40000
+ref1_grp1_p005	147	ref1	41	20	10M	=	17	-34	GCATGCAAGC	5555555555	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp1_p006	99	ref1	21	10	10M	=	45	34	CCTCTAGAGT	++++++++++	MD:Z:10	NM:i:0	RG:Z:grp1	ia:i:255
+ref1_grp1_p006	147	ref1	45	22	10M	=	21	-34	GCAAGCTTGA	7777777777	MD:Z:10	NM:i:0	RG:Z:grp1
+ref1_grp2_p001	99	ref1	3	1	8M2S	=	27	34	AGCTCGGTAC	""""""""""	MD:Z:8	NM:i:0	RG:Z:grp2	BC:Z:TGCA	QT:Z:abcd   H0:i:1	aa:A:A	ab:A:Z	fa:f:6.67e-11	za:Z:!"$%^&*()	ha:H:CAFE
+ref1_grp2_p001	2147	ref1	11	1	8H2M	=	27	34	AC	""	MD:Z:2	NM:i:0	RG:Z:grp2	BC:Z:TGCA	H0:i:1	aa:A:A	ab:A:Z	fa:f:6.67e-11	za:Z:!"$%^&*()	ha:H:CAFE
+ref1_grp2_p001	147	ref1	27	13	10M	=	3	-34	GAGTCGACCT	..........	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p002a	99	ref1	7	3	10M	=	31	34	CGGTACCCGG	$$$$$$$$$$	MD:Z:10	NM:i:0	fa:f:6.022e+23	RG:Z:grp2
+ref1_grp2_p002	99	ref1	7	3	10M	=	31	34	CGGTACCCGG	$$$$$$$$$$	MD:Z:10	NM:i:0	fa:f:6.022e+23	RG:Z:grp2
+ref1_grp2_p002	147	ref1	31	15	10M	=	7	-34	CGACCTGCAG	0000000000	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p003	99	ref1	11	5	10M	=	35	34	ACCCGGGGAT	&&&&&&&&&&	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:4294967295
+ref1_grp2_p003	147	ref1	35	17	10M	=	11	-34	CTGCAGGCAT	2222222222	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p004	99	ref1	15	7	10M	=	39	34	GGGGATCCTC	((((((((((	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-2147483648
+ref1_grp2_p004	147	ref1	39	19	10M	=	15	-34	AGGCATGCAA	4444444444	MD:Z:10	NM:i:0	RG:Z:grp2	OQ:Z:9999999999
+ref1_grp2_p005	99	ref1	19	9	10M	=	43	34	ATCCTCTAGA	**********	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-1000
+ref1_grp2_p005	147	ref1	43	21	10M	=	19	-34	ATGCAAGCTT	6666666666	MD:Z:10	NM:i:0	RG:Z:grp2
+ref1_grp2_p006	99	ref1	23	11	10M	=	47	34	TCTAGAGTCG	,,,,,,,,,,	MD:Z:10	NM:i:0	RG:Z:grp2	ia:i:-1	OQ:Z:1111111111
+ref1_grp2_p006	147	ref1	47	23	10M	=	23	-34	AAGCTTGAGT	8888888888	MD:Z:10	NM:i:0	RG:Z:grp2
+ref2_grp3_p001	83	ref2	1	99	15M	=	31	45	ATTCTATAGTGTCAC	~~~~~~~~~~~~~~~	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p001	163	ref2	31	99	15M	=	1	-45	CTGTTTCCTGTGTGA	|||||||||||||||	MD:Z:0T0A0A1C0A0T0G0G0T0C0A1A0G0	NM:i:13	RG:Z:grp3
+ref2_grp3_p002	99	ref2	46	99	15M	=	16	-45	CTGTTTCCTGTGTGA	{{{{{{{{{{{{{{{	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p002	147	ref2	16	99	15M	=	46	45	CTAAATAGCTTGGCG	}}}}}}}}}}}}}}}	MD:Z:15	NM:i:0	RG:Z:grp3
+ref2_grp3_p003	99	ref2	1	99	15M	=	1	15	ACGTMRWSYKVHDBN	0123456789abcd!	MD:Z:1T0T0C0T0A0T0A0G0T0G0T0C0A0C0	NM:i:14	RG:Z:grp3
+ref2_grp3_p003	147	ref2	1	99	15M	=	1	-15	NVHDBMRSWYKACGT	!dcba9876543210	MD:Z:0A0T0T0C0T0A0T0A0G0T0G0T1A0C0	NM:i:14	RG:Z:grp3
+ref12_grp1_p001	97	ref1	36	50	10M	ref2	2	0	TGCAGGCATG	AAAAAAAAAA	MD:Z:10	NM:i:0	RG:Z:grp1
+ref12_grp1_p001	145	ref2	2	50	10M	ref1	36	0	TTCTATAGTG	BBBBBBBBBB	MD:Z:10	NM:i:0	RG:Z:grp1
+ref12_grp2_p001	97	ref1	46	50	10M	ref2	12	0	CAAGCTTGAG	AAAAAAAAAA	MD:Z:10	NM:i:0	RG:Z:grp2
+ref12_grp2_p001	145	ref2	12	50	10M	ref1	46	0	TCACCTAAAT	BBBBBBBBBB	MD:Z:10	NM:i:0	RG:Z:grp2
+unaligned_grp3_p001	77	*	0	0	*	*	0	0	CACTCGTTCATGACG	0123456789abcde	RG:Z:grp3
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/bc.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,12 @@
+@ref1_grp1_p001
+GT
++
+""
+@ref1_grp1_p002
+TT
++
+""
+@ref1_grp2_p001
+CA
++
+cd
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/bc10.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,12 @@
+@ref1_grp1_p001
+GT
++
+""
+@ref1_grp1_p002
+TT
++
+""
+@ref1_grp2_p001
+CA
++
+cd
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/bc_split.fq.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,12 @@
+@ref1_grp1_p001/1
+GT
++
+""
+@ref1_grp1_p002/1
+CCGG
++
+""""
+@ref1_grp2_p001/1
+CA
++
+cd
Binary file samtools_fastx/test-data/samtools_fastx-in1.bam has changed
Binary file samtools_fastx/test-data/samtools_fastx-in2.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/samtools_fastx-in3.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,435 @@
+@HD	VN:1.0	SO:coordinate
+@SQ	SN:2micron	LN:6318
+@SQ	SN:chrI	LN:230208
+@SQ	SN:chrII	LN:813178
+@SQ	SN:chrIII	LN:316617
+@SQ	SN:chrIV	LN:1531919
+@SQ	SN:chrIX	LN:439885
+@SQ	SN:chrM	LN:85779
+@SQ	SN:chrV	LN:576869
+@SQ	SN:chrVI	LN:270148
+@SQ	SN:chrVII	LN:1090947
+@SQ	SN:chrVIII	LN:562643
+@SQ	SN:chrX	LN:745742
+@SQ	SN:chrXI	LN:666454
+@SQ	SN:chrXII	LN:1078175
+@SQ	SN:chrXIII	LN:924429
+@SQ	SN:chrXIV	LN:784333
+@SQ	SN:chrXV	LN:1091289
+@SQ	SN:chrXVI	LN:948062
+@PG	ID:kallisto	PN:kallisto	VN:0.43.1
+chrI_25874_26397_2:0:0_7:1:0_2	83	chrI	25658	255	200M	=	25739	-119	GCTGTAGTGGCTGTTGTTGGTGTTCTGATGTCAATGATGGTTTCATCAGTTGGCAAACCGTTCGAACCGGTGACGGTGGTCATTTCAGTGGATGTAGAGGTAAAAGTGTCGTTCCATGGCTGAGTTGTAGTCATGGCAGTAGGGGCTGTTGTTGGTGTTCTGATGACAATGATGCTATCATCAGTTCGCAAACCATTGGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrI_25874_26397_2:0:0_7:1:0_2	163	chrI	25739	255	200M	=	25658	119	ATTTCAGTGGATGTAGAGGTAAAAGTGTCGTTCCATGGCTGAGTTGTAGTCATGGCAGTAGTGTCTGTTGTTGGTGTTCTGATGACAATGATGGTTTCATCAGTTGGCAAACCGTTGGTACCGGTGACGGTGGTCCTTTCAGTGGATGTAGAGGTAAAAGTGTCGTTCCATGGCTGAGTTGTAGTTATGGCAGTAGTGGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrI_93599_94144_3:1:0_9:0:0_1	163	chrI	93599	255	200M	=	93945	546	TGTTATATCTAAGCCTTCCAAGCGACCCACACACCATTCGCATTCATCAGACGGGAGTTCTAGCACGCAGACAGATATATCGTTACAGAGCTTGCTTTACCATGATCTTGAAAGCTCACCAAAGAAACATGTTTCGCCGTCAAGACCGCCCTCTGTAGCTTCCGAATCCTCTCCTGCCGTTGCTCATCCCATTGGGCTTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrI_93599_94144_3:1:0_9:0:0_1	83	chrI	93945	255	200M	=	93599	-546	GCCAATCTTTCGCTAAATTCACATGAATTAGACTACTATCAGCCTCATATCGGATTCCAGTTACAGCTGACAGAAGCTTTACTAAACCACAGTTTGAAAGATGAGGTTCTGAAAGATGAAAATGACCTTGTTAAAAACATTGCAAATTTGGACAAGATCGTTAAAGAGCTATGGGACTTAAGATCCAGGACCATTGGATG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrI_139586_140147_6:0:0_3:0:0_3	163	chrI	139586	255	200M	=	139948	562	TGCAGCGCCACCTGGAGCACCACCAGCTTTGTACAACTTAGAGATGATTGGGTTGGCAATGTCTTGCAAGTCCTTCAACTTGTCATCGAATTCTTGCTTGCTGGCAGTGGTGTTGCTGTCTAACCAAGAAATAGTCTCTTCAGGCTTCTTGGTGCCGGTGTCCTTGTCAGCTTGTTCCAATTTGTCACCAGCTTCAGAAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrI_139586_140147_6:0:0_3:0:0_3	83	chrI	139948	255	200M	=	139586	-562	TAGACTTACCAGTACCCTTTTCGACGGCGGAAACATTCAAAATACCGTTAGAGTCGACATCGAAAGTGACTTCAATTTGTGGGACACCTCTTGGAGCTGGTGGAATACCACTCAATTCGAACTTACCCAACAAGTTGTTGTCCTTAGTCTTGGATCTTTCACCTTCAAAGACTTGAATCAACACACCTGGTTGGTTTTCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrI_176449_177020_5:0:1_5:0:0_0	99	chrI	176449	255	200M	=	176821	572	TAGGCCGTTATTTCCGTAAAGGATGGTATAATAATAAGAAATTTATCATATTAATAATACCTATATCCAAAAATTTATATTTATATACATGCGCCTAACTATTCATACTATTAATTTCATATTATTAAGCTTTTTTTTTTTCATTTATCATTTTTTTTCGTAACCCTCTCCTACCTGTACAGGTTTCATTCGTAAAGCAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrI_176449_177020_5:0:1_5:0:0_0	147	chrI	176821	255	200M	=	176449	-572	TTCAACTGGATAAGTTTCAGTTGGGTGAGCAGCTTAGAAAGAGTAGTATTCAGCCAAATGAGCTCTGATATCGGAATCATAAACACCTAATTCAACCAAATTAACTCTTTCGTCAGATTGAGTTAATGTAGTGGTTCCTGCGGCCGAGGCAACAGCAGCAATGGCGGCGACACCGGCAGCGATTGAAGTTAATTTGACCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_464058_464495_1:0:0_2:0:0_1	115	chrII	72181	255	200M	=	464296	392116	AACCTCAAGCACAAGCACAAGCTCAAGCACAAGCACAAGCACAAGCGCAAGCACAAGCACAAGCACAGGCGCAAGCACAGGCACAAGCACAAGCACAAGCACATGCACAAGCGCAAGCACAAGCACAAGCACAGGCACAAGCACAAGCACAGGCGCAGGCACAACAACAACAACAACAACAGCAACAACAACAACAACAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_128532_129141_1:0:0_5:0:0_c	99	chrII	128532	255	200M	=	128942	610	ATGACTTGTTCCGTGTGGATTTCCAAACTTGATGTGGGCTGGGCATTATAGGGAGTTTGAAGGGTCTTCACTGTTGCTGATGGAATTTCTCTGGTATCTTCAAACTCATCATCGTCTGAAGAGGATGAATCGCTTTCGTCAATATGCAATTCCTGAATTGGTGGAAACTCTTCATATATTGTCTTTGCTTTTGGTTGAGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_128532_129141_1:0:0_5:0:0_c	147	chrII	128942	255	200M	=	128532	-610	ACGTTCTTCCAACGTTTCCGGTAGCGCAACATCATCTCTTACGGATTGAGGACCATTGTTTGCAACAGACGATGTCAAGGATTGACTTCTTGGAATACCATATTCATTCAAATAACCATCTAACCTATCACTTAATGTTTCAGTTAAGTTTGGATTTGCTGTCTCATTTCCTGACTGGGTGCCGTTGTTTCTATTGGCAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_178741_179333_0:0:0_5:0:0_7	163	chrII	178741	255	200M	=	179134	593	GGAATCTTCAATACTCAACTTCTTTACCACTTGTAGGGCTGCTTTACGGTATATTTTCTCGATGTGTTTTTTCAAATTCCTTACACCACTTTCTCTACAGTAGTACTTCATTAACGCTGTTATTGCATCTTCTGTCATATCAACATGAGAGTTTTCTAGACCAGCGCTTTTCTTGGCACTTGGAACTAAATACTGCTCGG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_178741_179333_0:0:0_5:0:0_7	83	chrII	179134	255	200M	=	178741	-593	CGCGGACGGATCGCCGTGTATGCCGCCGTGTCCAATCTTATCGATTTCATCTATCAAAATCAAAGGATGTTGAGTTTGGCACTTCTTTAATGCTTGAACTACTCTGCCAGGTTAGGCACCAATATACGTTCTCCTATGACCTTTTATTTCTGCCTCGTCCGTCATACCGCCTACAGAAAATCGGAAGAATGGCCTGTTAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_185770_186311_6:1:0_5:0:0_6	99	chrII	185770	255	200M	=	186112	542	AGCCTCCCCTGTGCAGGCATGGGGAGGAATCCATGCTGAAAACATCGAAAACTTCGGCGAATCCAGGTAGAAAGTTCTGGATTTGCAAGAGATCACGGGGTGATTCAAATAATACAGAAAGATCATGTGGGTTTTATCAGTGGGTTTAAATATGAAAACGTCAGCTTATATTTTGGGAGAATAAAACACTTTCTTCTATG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_185770_186311_6:1:0_5:0:0_6	147	chrII	186112	255	200M	=	185770	-542	AACTGTTAATGGTCAACCCACGAGTTCATCAGTACATATGTATGTACTGATGGACGAAGAAAATGTATCTTTATCCGCATGATTTACTCTGATGTAAGCCAGCTTATCGTCAACATGCAGGAATGAATATTCTACACCTTCACCAAAAATACCATAACGACGTTTCAATGCGTTATTTAACCATTGCCTCCATGTCATTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_371362_371914_8:0:0_3:0:0_5	99	chrII	371362	255	200M	=	371715	553	GCAGATCGTTTTCCGTCTGGCTTGAAATGTTCTAGTCTCCTTTTTTTCTTGGCTTCGGGAAAATACGATTTGTTTGTTAATCTATATGCAGAGCCGCTGCTCTGCATGGATTTATGATCTCGAGTGCCATTGAACTTGAAGCATCTTATGTTGAAAGGATTTGTATGCCATCATACCCGAACTTTTTTAGCACGTGAAAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_371362_371914_8:0:0_3:0:0_5	147	chrII	371715	255	200M	=	371362	-553	GTTTCATGCATATTTTTTCTCAAGGAGAAAGAATCTTCGCTGCGCCTTGGCATAATAACGTCTTCGGTAGGGTCAATTTTTTTAACGTTGGCGATGCCCATATTTAGCTCGTTTGGTCGTTCCTTCGAAAGATAATCGTTCGTAAATTAAATATAAAAGAGAGTAGTTTTCGAGCAACGAGTAGCCAGCTGGTGCCAATT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_462520_463118_3:0:0_3:0:0_b	163	chrII	462520	255	200M	=	462919	599	ACCGTTTTAAAGCAAATAAGGGAATTTCTTGAAGAGATTGTAGATACACAATGAAGGATACGAAAATGCACCTTAAATCCCAATATTATTACATATGCTCATCGGGAAAACCTTATAAGCAATAATAGATTTTAAGTATGTAAAGATACAAATAATAATATATTTATATACGCATATATTTACATGTGCATATATGAAAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_462520_463118_3:0:0_3:0:0_b	83	chrII	462919	255	200M	=	462520	-599	AGTGTGTTCTCCTGTGGGGATTTTTCTTGAGATGTTTGCTCTTCCTCACGCATTTTGGCCTCATCTTTCACTGTTTCCATTGTTTCCAAAGTAGGTTTGATTACAGTTATCGTTGTAGCAGCGGTTTCATCTTGTTGTTTTGCAGCATCTCTGGAAGCGGCTGGCTCCGCCTCTTCAGTAGAAGGTGCAGATGCTTCAGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_464058_464495_1:0:0_2:0:0_1	179	chrII	464296	255	200M	=	72181	-392116	GGGGAAGCTCCATTACTGTACATTGTTGCAGAAGAGTTAATAGGCGTTTGTTGAGCAGGATGCTGTTGTGCTACCATTGAAGCAGTAGCATTGGCAGATTGGGCTGAAATTCTAGTGTTCAAAGGATTTCCTTGATCATTAGGTTGTAAGGTAGGTTGTAAAATCACAGGAGGTGGGGCAGGAGAGGCATTCGTTGGCGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_482749_483235_3:0:0_1:0:0_0	163	chrII	482749	255	200M	=	483036	487	TTGGAGATTCTAAAGTTTCACCGGTGACTGGGTTACCGATATCGTATTTATCCATCAATTCACCTAATTCTGGGCCGGAATAACCATCTATTTTAGCCAAAATTTCTTCCTATTCTTTGACAACGTCGTCATCCAATTTGACTGCTTTAATTTGTTTAACTTTTTTCTTTCTCTTCTTCTTTTCGGCATCGTCCTTAGCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_482749_483235_3:0:0_1:0:0_0	83	chrII	483036	255	200M	=	482749	-487	CTGAAAATCTCACCAGTCTTCAAATCTCTACACATCCAATCAGAAAATTTGTCAACATGACCTGAGGTCTTCAAAACCTCATATGGAGTTAACATAGTACAATCAACTTCCAACATATCTTCTTCCAAAATAAAATGCTTTCTCCAGCCGTCAATGATGTTGTTTTGGAATGCACAACCTGGTGGACCATAGTCATATAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_509290_509702_4:0:0_3:0:0_4	99	chrII	509290	255	200M	=	509503	413	CCAAACTATGGGAAAAGTTTAACTCTTTCTCCAAGACAACCATCTATCCGCTTTTATCTTCCTTGTATCTAGCGCCATCATGGAAAGAATATGTCCCGCTAAAATATCCTTCTAATAACTTCAAGGAATGATACAAAATTTGGGTGAAAAGGTTTACATTGGATTTATTGAAAACAGGTACAACAGAAAATCATCCATTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_509290_509702_4:0:0_3:0:0_4	147	chrII	509503	255	200M	=	509290	-413	CTTTGATTAGGGAAGATGATGGCTCACTATCAAATTTTTTGCTACCTTATATTTCTCTGGACATTATGATCAAGGCAGAAAAAGGAACTCCATACGCTGATATTTTAAACGGGATTATTATTGAATTTGACTGCATTTTCACGTGCAATCTGGAAGCAATGAATAACTTGCAAGTGGATTCGTTAAGAATGTGCTATGAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_551662_552193_3:0:0_4:0:0_2	163	chrII	551662	255	200M	=	551994	532	AAGGTTTGTAAGCCGATAATTTTTGGATTTACGAGACTCTGGCTTGGAGATGTCAGCAATATTCGGAGAAAGTTTTCTTAATGTTTTCTCTTTAATTTTCAAACGATGTGGCGTTTGCGACGTTGTTAAATTTTTATTTTTATTAGGGGAAATATACGCTTTTGTTGGTCTCCAATAACCTCTTACAGGGCTTTGGTAAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_551662_552193_3:0:0_4:0:0_2	83	chrII	551994	255	200M	=	551662	-532	CTAGCTTTTTGTGTGTCGTTAGCTTCAAAGAAGTCTTATCAAACCTCGGAATAGAGGATTTTCGAGAGTTTTTTCCTTTGGGTGAATTATTTTTGGTTTTTTTATGTTTTACTGAGAATTGATCTCTTAACGCTTCTTGCATATCAGTATCCGTGGAGTTTATTGACTTAAACTTTTGAGAAACTTTTTTCATGGGGGAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_561725_562138_6:0:0_5:0:0_9	163	chrII	561725	255	200M	=	561939	414	GATACTTCCAAAGATGCGCTAACAGATGAACATCTGAACCCCCCCAATGGCTTCAATTGACCATTCTATGAGTCTCCTCCTCAACTCATACCGAAAATCATTCATCAAACCTACAAAACAAACTATATCCCAGAACAGTGGGTAAACGGGAGGCAGAAGTGCATTGATTTACATCCGGATTACACTTACAATTTATGGAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_561725_562138_6:0:0_5:0:0_9	83	chrII	561939	255	200M	=	561725	-414	ATACTTTCATTAAACAGGAATACCCGTGGTTTCTTGACACCTTTAGGAGTTATGAAGATCCAATTGAGAGGGCGGAGGCAATACGGTATTTCATCCTTTCGCATTATGGTGGTATTTACATGGACTTGGATGATGGGTGTGAAAGAAGGCTAGACCCTTTGTTGAAAGTACCAGCATTTCTAAGGTAAACTTCGCCTACA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_600174_600690_0:2:0_1:0:0_3	99	chrII	600174	255	200M	=	600491	517	GAAATGACTCCATTCCCTGAATTTTTTGTGAAACCAATATCTGAGACTCTTCCTTCATCTTATCAACGTATTGTTCAGTCAATTAAGTAAGAAGTATATTTGAGCGCAGCCTTAATCATATATAGCACCAGTTATATGTTTGGCCCTCTCTTGAGTTGAAAAACACATAATACATAGTACTGTACTTTTCTCTTTTTCAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_600174_600690_0:2:0_1:0:0_3	147	chrII	600491	255	200M	=	600174	-517	GTGACAACATTTTCATAAAAATATTCTGATCTCAAACTGAAGACATAAAATAAGGATATGAGCTACATAGTTGACCTACAAGTGCGAGGATCATCTCTGAGGGTTATCAAATGTATGTTTAGAGAGGATGAGCAAATTTCTTCTCTACATTCTGGTTCTGACTCGAAACAAAACAGCAACAAAAAGCTGGGACAATTTTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_688026_688533_5:0:0_2:0:0_8	163	chrII	688026	255	200M	=	688334	508	GGGGATGCTCGGTGCTGCTTATGTATTAGAAGCAATTGCAAATGATAACATTATTCCTGGTTTGGAGATTTTTGCTCATTCACCGTTATATTCATTGATTTTTACATGGATTCTAACACCGCTATGTTTGTTTTCAGCCGTCAATAAAAACGCCACATTTATCACAATGACATTCTTAATGACGTTTGTGGTCATGAATT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_688026_688533_5:0:0_2:0:0_8	83	chrII	688334	255	200M	=	688026	-508	TGTTAATAGTTGATGGCATCTCAGCGTCTGTCTTGTTTTTGGCTATGATTTTGCTATTTTTATTCTTTCATTATTTTTCACCACCGAAGGCTTGGGGTGATGTGTCTCAAAGTTTAATATATCATCAAGTGAGAAAGTATTTGCTTCGCCTACGTCAAGACAATATTAAATACTGGAGGCCTCAAATATTGCTGTTTGTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_798295_798806_6:1:0_5:1:0_a	99	chrII	798295	255	200M	=	798607	512	AATGTTGTTCTTGATAGTACCCGAAACTCTTGCGGCTGCCAAGACAGCACCCAAGAACTCACAGAGACCCGGCAAAACCATGGCTTGCCAGTATTTTAGAGATCTAGAAGAGATCGACGACGCGAATGAGTTCGCCACGTCGATTGCCCCGATGTTAAAGGCCTCCAAAAAAGCAAATGACATGGCAATGGCAAAAATAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrII_798295_798806_6:1:0_5:1:0_a	147	chrII	798607	255	200M	=	798295	-512	GTAAAATAACCGCAAGGTAAAGATCATCTTCAGCACGTTTATATATAATTTTCTTCATATCGATAACCGGGCTTAGTGACATGAATTGTTTGGAGATGTCCACCCAGTAGCCATTGTAAAAAAAATCTGCTATTGACTGAGTTAATCTAATGATTGACATAATAGAAGGATCCAAAGTGGCTGTGACATCTAGTATTGAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIII_58852_59360_5:0:0_4:0:0_4	163	chrIII	58852	255	200M	=	59161	509	AATTTATCATTGCGTGGGTACAACCGTGCACCATTTCTGAAAAATTTGCGATGAGCATCCCTCAAAATCCGTATTATCCGCTAGTGTTTTGAGGTTCAACAAGACAACATATAAGAAGGGAAGAAGGACAGGAGGCAATGAGAACTTGGGTCTAGCTCGAGAGTCCAGATCCACATGCAGGTTCAAAAAATGGTGCGAGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIII_58852_59360_5:0:0_4:0:0_4	83	chrIII	59161	255	200M	=	58852	-509	AAACTAAGTAATGGGACGATCTCTGTCAGAGGATTAGTGAAGGACCGTACAGGAAGCGGCAAGATCGAGGGCTGTGTGGAGGCGTTTCTGGATGCCAGGACCCAAGTGAATACGCCCTGGGACCGTGCTAAGTGCAATTGGCTGGACCAGATAGATTACTATGTACAGTTGAGAAAGACCGCGTTTTCTAAGGAATTGGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIII_65894_66394_3:0:0_8:0:0_1	99	chrIII	65894	255	200M	=	66195	501	ATTATTTTCGTTAGTGTTCGGTTTCCAAGTTAGAAATAATCTACTGGAAAACCTTTGGGATCAACCCAAGCTTACTCATTCTGATTTTCACAGCGTTTCTGTGACCGTCTAGACCCTCCTTCTTGGCAACGCACATAACAGCTCTACCGATGTTTTCTAAACCTTCAGGTGTAATGTTTTGGGCAGTGATCAACTTTTGG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIII_65894_66394_3:0:0_8:0:0_1	147	chrIII	66195	255	200M	=	65894	-501	AGCACCCACAAATAAGGACCATGCATTGTCAACCAATTTAACATAATCGTTAGCATTGGCGATTTGTAGAATCAAATGTTATGGTGCATATTGGTTGGACATTTCATGGGCTTCTTCGTAACCGTCACAAAGAACGATCGTACTGTGAGCAATACATGTACGAACAAGTTCCACACGTGGCAGGTGTAAAGCTTGATTGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIII_80246_80792_1:0:0_3:0:0_0	163	chrIII	80246	255	200M	=	80593	547	GTTTCAAACTGGACTCTGTAAGGGGATCGAATAAGAAGAACCGCAATAAGATAAAGAAAACCAAAAAAAATAAAAGATCTAGCACACTTTCGTCATCGTCATCATTATTATTGAACAACCGAAGCATACAATCTACGCCACGCAGACGTCCATCCAAGAGGCATTCCAGGGAATTCTCTTCTAGCAGGAAGAGATCGTCC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIII_80246_80792_1:0:0_3:0:0_0	83	chrIII	80593	255	200M	=	80246	-547	TCAAGCAAAAGATTATCTTATATGCCTAATACAAAAAGAACCTCACTAACATCAAAATCATTATCAAACGTTACTAACCTAATAGATGATGATGATTGGGAGTACATTGAAAAGGATGCAAAGAGAACAAGTTCCAACGTCGCTACACTGATTGATGAAATATTTGAGCCTGAGAAATTTGAATTGGCGAAAAGAGAAAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIII_209470_209900_3:0:0_9:0:0_2	163	chrIII	209470	255	200M	=	209701	431	TCGATGAACTGTCTCCATGACCTGTTGGAATTCGACGTGAATTGTTGGAATGCTGTGGGATTTTTGAACCTCACCAAATACTCCTCTGCGTATGCGAGGTTGACCAGCAAAGAGATGAGTATGCACTGTGGCTTCCTGACGAGTGTTTTTTTGCTGTTTTTCTTGGCGGATGTTAGAGGATGTCTAGCACTTGAGTATAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIII_209470_209900_3:0:0_9:0:0_2	83	chrIII	209701	255	200M	=	209470	-431	AAGCCAAGGAGAACTATATTTTCTGTCGTTTTTTTTATTTTCGCTTCAATTCTCTATACACGTACGTCATCACGACGGGAAACCAAAAAAAAAAAAAAGAATACAGTACAAAAAGGTTTACTTTACCCAGAGTTAGTATACGTAGATTTTATACACGCACTATTTTTCTGATATTCAGGAGATGGCTGGCCACAGAACCC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIII_238949_239533_6:0:0_6:0:0_3	99	chrIII	238949	255	200M	=	239334	585	GTCACATATTCTTTGCTTCAATTGCTCTCTAGGAAACTGACACACTCGTAGATTGGAAGACCGAAGAAAATAGATAGACTTTCGAATAAGTTCAGCAACAACCTGTGGATGAAATCCTTGCTGCTCTGCCTGTACTCCTTAGTACTCTGCCAAGTCCACGCTGCACCTTCATCATGGAAGCAGATTACCTCCAAGGATGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIII_238949_239533_6:0:0_6:0:0_3	147	chrIII	239334	255	200M	=	238949	-585	TCGAAGGGAAAGATCCCAATGATATACATACTTACTCGTTCCGTAAGACCAAAATCAACAAGGTTTACCCTAACAAGTATATCCACGGTGGTGGGGTTGCCCCAGATGTGGGTCCTTTCACCGTCTTTGGGCACAAATTTGATGAAGAAAACTTTTACTTAAAACATGACAGGCCTGAAAGACTCGCAATGGCCTATTTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_125433_125964_0:0:0_4:0:0_10	99	chrIV	125433	255	200M	=	125765	532	ATTAATATTCTGTCCTGTGTCACAAAATATTGTAATAATTTGGTGCGGTGTATGGGTTCAAGTTCCCAAAAAAACAACTAATTTGCGACACTTCGTAGTTCTGTGCTTTTATATGGAATATACTTGTGGACTCTATTCCTGGATGTAGATTTGCTTACAGATAGCCAAGAAATATTAGAAAAATATGCAGTGTAACACAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_125433_125964_0:0:0_4:0:0_10	147	chrIV	125765	255	200M	=	125433	-532	GCAGAAGTAGAAGAGAAGAAAATGTATTTGTGGGAAAAATGGAGGACGTACTTGTAAAATGGAGGCCACCTGCATCTTCACATCGTGGCGCTATTGAAGCTATTAATGGCACCCATCCATATCAGCTTAGCACAGCACAATTCAACTAGAGAAGATCGGATCCATTTGGTTCAACAAAGAGAGATGAATCCGTGCGTTCC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_144073_144624_1:0:0_7:0:0_b	163	chrIV	144073	255	200M	=	144425	552	TGTGCGATTCACTAAAGCTACATAGAAAAGATCGGTTTGTCGACAAACTTGCTCTAATCGATTATGACGGTTTAAATGCACAAAAAAGAAGGTTAGATTACGATGAAAAGGACCTTTATACATTCATTGTGAAAAAGGTAAAAAGAGACTAAATTGAGTTGCATAGATGTTAGCCATAATAGAAAATAGCGTATGAGGTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_144073_144624_1:0:0_7:0:0_b	83	chrIV	144425	255	200M	=	144073	-552	TTTCATTAAGAAAATATAATGTAACCAAGAACAGCTTGTTAAAGGGCTTCCTATTTAAAGTTATCTTCTTTTCCCAAAGGTACCACTCCTAGATGGTTGATAAGAAGTGTAGTGTCTGTAATTGGAAGAGTTGGAAATGCTGTTATTATCAACATAAGTAGAAGGGTTATATCTGGTGCCTTACATATTCTCCGTTATCG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_173050_173669_2:0:0_1:0:0_17	163	chrIV	173050	255	200M	=	173470	620	ACTTGTTTCAGTTGGGGAAAATTGGTGCTGGAAATTCTGGAACTGTGGTGAAGGCACTACATGTTCCTGATTCCAAAATAGTTGCCAAAAAAACCATTCCTGTGGAACAGAATAAGAGTACAATCATCAACCAATTAGTTAGGGAATTATCTATCGTCAAAAACGTTAAGCCCCATGAAAACATTATCACCTTCTATGGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_173050_173669_2:0:0_1:0:0_17	83	chrIV	173470	255	200M	=	173050	-620	GTGATATCAAGCCTTCCAATGTTCTGATTAATAGTAAGGGGCAGATTAAGTTATGTGATTTTGGAGTTTCCAAAAAACTAATAAAGTCTATCGCTGATACATTTGTTGGAACGTCCACTTATATGTCACCAGAGAGGATACAAGGAAACGTTTATTCTATCAAAGGGGACGTTTGGTCATTGGGCTTAATGATCATCGAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_182621_183117_1:0:0_3:0:0_16	99	chrIV	182621	255	200M	=	182918	497	ATCAGCCCCATAATATTCTCCTTTTGTGGACCCCCAGGCATTCTCGTTGTCTAACATACCATTCTCTTCATCTTCCTCAGGAAGCTGGTCAGTTTCTAAGTTTCTACCAAATATTTTCTTATAGGCTGCAGCACCATCTAGTTCCTCTTCCTCTTCTTCTTCCTCATCTTCTCTTTCATCTATTGAGTCATCATCTTCAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_182621_183117_1:0:0_3:0:0_16	147	chrIV	182918	255	200M	=	182621	-497	TTCCCTTTTAGAAGCAAAATCATCAACTTCGTTTAAACCATACGGATTAATCTCATCCCCAACTTCAGAGGTCTTAGTTCTGTTTGAGCCTTTGCGTACCATATTATTCTATACACCCACTCGAATATGTTTTCTCTTCCTCCAAAACTTTTTGTAGAAAAGCATCAGTCAGATGAGCTATGATGAGATGAGCTTCATTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_186784_187257_2:0:0_5:0:0_12	99	chrIV	186784	255	200M	=	187058	474	TGTTTGTGAAATTTGTTTCCTTTATTTGTGGATCATTTGTGGCCATTTTAGCTTTTCTCACTGTATTCGATCCAGAAAACTTTTTAAACTTTGAAATCACCTCGGACAGATCTGTCATTTTCTACATTACTATTCTGGGTGCTATATGGTCTGAAAGTAGAAATACAATAACCCAGGAGTACCATGTTTTCGACCCCGAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_186784_187257_2:0:0_5:0:0_12	147	chrIV	187058	255	200M	=	186784	-474	AATCAAACTAGAGTTCTGGTAATTGTACAACTTGAGAATAGTAATACTTTTGAGGGAACTCACTAGCCTGATGATAACACCGTTTGTACTTTGGTTTTCGTTGCCCGCGTCAGCCGGAAGGATTGTAGATTTCTTCAGAGAGAATTCTGAATATGTGGACGGATTAGGTTACGTTTGCAAGTATGCTATGTTTTACATGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_244937_245365_5:0:0_6:0:0_14	99	chrIV	244937	255	200M	=	245166	429	AGAACAGAAGACGATAGAGATATTTCTGGTAAAGATGTAAACTAAGTTATAAATACGATATGCGTAATTGTGTAAATAACAATAACTATAATTAAATTGAATAATTAAAAGTCTACGTTATTCGTTAAATCAATTGTTTATCTAGTTACGAATGTCTAAAGTTTTTGTAGGACACTTGCACAAATCACTTCCATTATTAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_244937_245365_5:0:0_6:0:0_14	147	chrIV	245166	255	200M	=	244937	-429	ACCATTGTACTTCTTCTACTTTTTCTCTTCGTCTATCCGTTCATCTAGTTCATCTGCGTTAATTAGGTCATCAATATCGAAATCGAAATCATTTCGATCTTTGTTGTACTGTCCAATTACACGTCTTTGAAGGCCTGTCTTTGAGTCTATTTCAAATTTTCTGGAAGCGGAAGAGGCACTTGCACTGTCATGGCCAAGGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_249898_250451_2:0:0_3:0:0_8	163	chrIV	249898	255	200M	=	250252	554	GAACTGGCCGAATTAAACATAGAATACATTGATAAGATGACTTGGAAACGGTGTATTAGAGACGGAACTATGACATTAGACAGTTGGGCTCAAACAACTTTTTCAGCAAGATCCTCAACTGTTCTGGAAAAGTTAAGAGGCATATACCTTTTTTGCACAGAGATGTTTGCTCTGACTGATGATAATGGAACGTCAGATTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_249898_250451_2:0:0_3:0:0_8	83	chrIV	250252	255	200M	=	249898	-554	GAGTTGAAGTATAACCACTGCTGGTTGAGAATACTGGTTAACAAAGAATGGAGATTTATTGACCTTATTTTTGGAAATGTAACCAACCCAATTCATGAATTTGTAAATAACAGAAAGATCAAGAAAGCAGAAAATAGCTACTTTTTGATGGCACCATTAGAAATGATATACACACATATACCGCCTAGGGAATTTGAGCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_876300_876846_11:0:0_4:0:0_0	69	chrIV	514618	0	*	=	514618	0	ATGGTTTGAAACAAAGTGGTGCAAACTTGTATGAAACCATTAAATCATATTTCATAAATTGTTGCGACATGCAAGACGTTCGCGTATGTTCATGCGTATTTAAGAATCGTCAAGTAACAATTTGCTAATTCGTTGACGACCTGATTTTATTTAGCAAAGACTTCAATGCACATAAGAAAATGATAACAACACTCAAGAAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:2
+chrIV_876300_876846_11:0:0_4:0:0_0	137	chrIV	514618	255	200M	=	514618	0	TGTTGAGCAAGTGTGTTGATGTAGTATAGTAAGTCAAATCTAAATTTATATCCAACATATGAAGCTAGCCCAATCAACTTTTGCATTTCATGCACTTTCTCTTTGTATTCATCTTCATCTATTTCTAGTTCAACCTGTTCTATATAATGACCTGGTTGACCTGGAGCTCTAAGTTACTTTCCTTTTGGGTTCAAAGGTAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:2
+chrIV_559435_559935_6:1:0_2:0:0_18	99	chrIV	559435	255	200M	=	559736	501	GTCTTCTTTAACTCGGTCTTCTCAAAATTTTTTGCCTTTTCTTGCATCCATTTTTTGAAGCTCTTGGTAGAATCGTTGCATGTGAGATGTATGAATATTAGGTTTTTCGTTTGCTGATTAACTGATGACGAATTCAGTAAGTTGTCGGCATGATATTGAAATAGAGCACGAATTTGCAGTGCATATTTTTTGTTTGCTTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_559435_559935_6:1:0_2:0:0_18	147	chrIV	559736	255	200M	=	559435	-501	GGTAAGGTAGTTCGTCTAAGTTTGTTAGTTCTTGAGGTTTCCATTCCAAAGTTATTATGGGGGCCCAAGTTTGCCATAGGTCATAAAGGTATACATGACGATATTTAAAGTAGTGAATATCGTCTCTTTTAGTTCTGGGGTCTCTATCCGTTGGTCCATATAATTTTTCATTGGGTAGAAGATTGGACAATGTGGGCGCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_563824_564394_8:0:0_2:0:0_5	163	chrIV	563824	255	200M	=	564195	571	ATTCTTTGAACCTACAGAGTTTGACAATGTTGACTTCTGCTACATTAGGGTCTTTACAGAGCGTTGATAGTATAAAACTGATTACTCTACCCGCCATCTCCAGTTTTACTTCAAATATCCAATCAGCTAACAACATTTATAATTCCGACACTTCGTTACAATCTTTCGATGGATTCTCAGCCTTGAAAAAATTTAACGTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_563824_564394_8:0:0_2:0:0_5	83	chrIV	564195	255	200M	=	563824	-571	TTGCAAAAGATTAACTCTTCATTGGGTTTCATCAACAACTCCATCTCAAGTTTGAATTTCAATAAGCTAAACACCATTGGCCAAACCTTCAGTATCGTTTCCAATGACTACTTGAAGAACTTGTCGTTCTCTAATTTGTCAACCATAGGTGGTGCTCGTGTCGTTGCTAACAACACTGGTTTACAAAAAATTGGTGGTCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_580788_581307_6:1:0_1:0:0_a	163	chrIV	580788	255	200M	=	581108	520	TTTCAATATGAAATAAAAATAACACTTTCAATACAATTGTTCAAACACAAGCATGACAAGTGAATTTGGAGTGTTTATACTTTACTCAATGACTTCAGTTAGTTGAACAATTGCCTTTTGGAAGGTACATTACAAGAAATCAAAAACTTCATGAAGCCATTAAAAAAGATGAAAAAACAACTGAAAACAACGAAAATCCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_580788_581307_6:1:0_1:0:0_a	83	chrIV	581108	255	200M	=	580788	-520	ACCAAAAACGTATCAGCACAAACTCCTATTACCATTAGCATTGAACGAACATGCGTGCCTGAAACTATTTCATATTCAGCAAAAATTGAAAAATGGCCCACCTTCTGCTGGGCTGTCATATACTAAAGAAGGAAGGAATCAAATATGGTTTGTTCGGTCACCAATTAACAAGGGCAGACAACAATCGAAAAAGCTGGGAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_643692_644219_1:0:0_2:0:0_3	99	chrIV	643692	255	200M	=	644020	528	CTGGACCTTCTTTGACGGTGTGCCAGAAGGTACCTGTTTTGAGAAAAAAGATAACAAACTCGATTGCTTCATTTTCTTTTGAGAAGATGTGGAGCCATTTTCGAAGTGTGCAGTCTTAGAAGTTTTAGGGGTAGCTGGGGCCATTTTGGAGTTCAAATTGGCTTTGTCAAAATTCACTAGTTGCTCCAATTAAAAAATCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_643692_644219_1:0:0_2:0:0_3	147	chrIV	644020	255	200M	=	643692	-528	CTGCTCACGCGTTTTTTTTCTCCGGGCAATGGTTGTTCAAAAAGCCAAACTTAACCAGAAGCCATTCATTATGTCACACATATAAAAATGCTTGCATACCATTAGTTGGAAATGGAGACTTTTCTGTTTCAATTGACACTAAATACATCTATTTATTTAAGATTGGAGAGCATGCTGCAAAAAATCAGGGTCTTCCTCCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_882753_883176_3:0:0_5:0:0_9	163	chrIV	649952	255	200M	=	650176	424	ATTTGTTTTTTGATGATTCCGAGCTATAACTTTGGGTTTGGTTGTATTCGTATAGCTGCGAGAATCATTCTTCTCATCACACCGATTTCTCCTGTAATTAGGTTTGCTGTTTCTCGATCCCTGTTGTTCTTCATAAATAGCATGGATATCTAAGAACAGTTCAGCGACTGTCATATTTAGATGTCGATGACGTGTGTAGG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_882753_883176_3:0:0_5:0:0_9	83	chrIV	650176	255	200M	=	649952	-424	GACCTCTCATAATTAATTGGCATGCGACCTTCTTATTGATATGAATGCCATTATTGTTCAGTCTGTCGATAATGTTTGTGACGTTTGTTTCAAATGCATCTGCAGGTGTACTGCCATTAGATTGCAAATTTGCCAGGGTCACAATGTCGTTTGACTCTTGCGTATCAGATTGCATTTTTTCAATACTTTTGGAAAGAATT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_946167_946637_1:0:0_2:0:0_4	179	chrIV	668020	255	200M	=	946438	278419	AAGATTTCGTAGTGATAAATTACAGTCTTGCGCCTTAAACCAACTTGGCTACCGAGAGTCGATTTCTTGCGAGGTGTTGTATCTCAAAATGAGATACGTCAGTATGACAATACGTCATCCTAAACGTTCATAAAACACATATGAAACAACCTTATAACAAAACGAACAACATCAGACAAAACCCGTCCTTCCCTAGCTGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_841170_841687_3:0:0_4:0:0_f	163	chrIV	841170	255	200M	=	841488	518	GGTTTGAGCAACTGGCCCATCAATGATAAGACATCTTGACCACCTTGTGGTCTTGCGTTTGCAACATCCAAATCGTGCAAGGTAACATCTTGTACAATTTCCTTTTTCTTATGCACTTCGCCTTTTGGCAATGGTACGTATTCCTCAGTTTCCAAATCAAATTCAGTAGCGTATGCATCAGATCTGCCCACTCGCTTAAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_841170_841687_3:0:0_4:0:0_f	83	chrIV	841488	255	200M	=	841170	-518	CCGACAATTTCATGTGAGATAGTTTTACCATATCCGCCCAACGGATTCTCTGCGTCTTCAGGGGTTAGTTCTGTCACTTCACCCTCTTAAAATTCCTTAGTTTCTTTGATTCTTAACACAATTGCTCTTCTAAAATTTTCCATTAGGGTTTCTGTTTTTTTGACCTCCACGGAATATAATTCGCTACCAACAAGAGGACA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_847233_847818_5:0:0_6:0:0_d	163	chrIV	847233	255	200M	=	847619	586	TGTTTGGTCTCAACTTATTCATTTTATTCATAGCTGCCCTGAAGTCAGTCCCACCAACTAAAGAGACAGAAGCGTACTTTTTCAAGGCATAATTCATATCGTGGATTTTTTTCACCTCTGCTTCGATTTGCAAGGCCCAATCTCTTGTTGGTGCGACAAAAACAGCTTTTACCATATATTGAGAATCGAACTTCGTATTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_847233_847818_5:0:0_6:0:0_d	83	chrIV	847619	255	200M	=	847233	-586	TCCAGTAAAGTGTCCAGCGTTACTTCTTTACTATTATCTTCTTTTGGCACGTGAATTAGTTTGGAAAAAGTGGTCTTATCAAAGTGCACTTCATCATAGTCTTCTCTAGACCTTGTCCTTGGGCGAGAATTGAAACGGGAGTTTCTATAAATGTTACTCTTGTTGTTTCTCTGATTCCTACCAAAATTTCTTTGATCTCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_870726_871233_6:0:0_1:0:0_e	99	chrIV	870726	255	200M	=	871034	508	AATTCTCAGGCCACGTCAGGCTTGCATAAGCCACGCTAGCTAATAATTCAGCGAGACCCTATTCCAAACCTAATTGTTCGGAACGATGCCATATCTCTTCCGCAGTGTGTGTCTAAGCGGCTTTAAGAGGATACGAAATGTCAAAACACGAGAAAATTCGATTATATCAGTACGAACTTTTCTTTGCGCTTACTGCCTGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_870726_871233_6:0:0_1:0:0_e	147	chrIV	871034	255	200M	=	870726	-508	CTATCCGTCTTCGAAACAAGTCAAAAGAGCGAAAACTAATGAGCCAACAACAAGGTTACTACCAACAAGCACCCCCACAGCAAGGTTATTATCAACAAGGTCCACCACAACAAGGTTATTATCAACAAGGTCCACCGCAACAGGGTTATCCTCAGCAGCAACCAGTCTATGTCCAACAAGGTCAACCAAAGGAGGAAAGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_946167_946637_1:0:0_2:0:0_4	115	chrIV	946438	255	200M	=	668020	-278419	AGATAAGTTCCCAGTAGTCGTTGTATTTGATTCTCTATTGGATAGTCAATGACACATTCGTGACCGAACAATGAGATATTATTGAGTACCGGGAGTATTATGTGTCATAATTTGTTGTATTATCTGTGTGACGGATTAAGTTTGCTATCTCAAATGCCGCGCGCGAGAATTGCTCATGATATAATAATAGCTAATAATAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_1060041_1060548_1:0:0_3:0:0_1	163	chrIV	1060041	255	200M	=	1060349	508	ACGGAGGAGGCTCAACAGAAAAGGCATGCACTATCGAAACTAATTCAACAAGAGACTAAACAAGCTATTAACAAACTGTCTCAATCAGTTCAAAGAGATTCTTCGAAGGGTTATTCCATTTTACAACAGACAAAATTATTTGACAACATCATTGATTTGAGAATAAAACTACAAAAAGCTGTAATTGCAGCAAATAAGCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_1060041_1060548_1:0:0_3:0:0_1	83	chrIV	1060349	255	200M	=	1060041	-508	GATAAATTTCAGAATAAAATTCCAACTTGGCGATCATATCACTAAAAATGAAGAGGTGGCGAAGCATAAATTGTCCAAAAAAAGATCTCTCAAAGAGCTTTACCAAGAAACTAATAGCTTAGACTCAGAACTAAAAGAGTTCAGGACTGCCGTATTAAACAAGTGGTATACCAAAGTTTCTTCTGCATCAGGTAACGCTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_1177126_1177640_7:1:0_3:0:0_15	163	chrIV	1177126	255	200M	=	1177441	515	ACATTGAAAAGCTCCTCCTGCCAATTAGATATTCGGAGCAGATTCAAGTAGTGGTGAATGGGAAAATTCAATATGTGTTCGTTTCCATCATTGTGATTACGCAATCCTGAGCTTACAATGAATTTGAGTTCCTGTTGAAATGTTTTGATGAATAACTCAACATTACCACTTTTCAAAAGGTAATCAAGTAAGGTATTGTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_1177126_1177640_7:1:0_3:0:0_15	83	chrIV	1177441	255	200M	=	1177126	-515	GCCTTAACAAGGCCATTTACTAGACCGATTAAGCTGTCAAATGTATGCAACTTCAGAACTTTTTCCATTATAAATTTTATGTTTGTCTCATCATGCAAAAATATTTGGAAAGTGGCTAACTGCCTATCCATCTCAGTTCCTTTTATCAGCCTATTGGTAAATCTCGTACAGTAGTTAGAAGTAAAGAGAAGAACATCACT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_1195691_1196148_1:0:0_3:0:0_6	163	chrIV	1195691	255	200M	=	1195949	458	TAATGTTTGTCATCGCCAAGTGCCGTGGCAACATCCTCCAACGTAATCTTGTATAAAGGTGGAACGACTTCCGGTGGCATATTAATCAGCCTTTCACTGAGAACCAAAGCCCAATTTTTATTACCACTATCAATCATAGTTTTGAAGAAAGTGGAAAGTCTCATGTCCACTTTTTGTAAATATTTGACATAATCACTTAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_1195691_1196148_1:0:0_3:0:0_6	83	chrIV	1195949	255	200M	=	1195691	-458	TCTGTTTTAATTGTGGTGGTTGGGGAACCTAGGTTCAAATCTGCCAAGCTGCTTAGTTGAATCCTGGTACTTTCTTGAGGACCAAATAACTCACGCAGTAAATTCTTTAAAGCATGAAAATCAACTTCTGGGTTACCACCGAAAAAATCGAAGTCAATATTTACGATCTCTTCTTCTCCATTTTGATCTTCTTCATTTTC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_1244113_1244597_3:0:0_3:0:0_7	99	chrIV	1244113	255	200M	=	1244398	485	AGTTTTGCTAGAAAAGTTGGAAATTGTCTTGAAGGGTGACGAAAAGGACTTGGAAGGTAAGGCCATGTTGAAGGTTGTTATGAGAAAGTTCTTGCCAGCTGCCGATGCCTTATTGGAAATGATTGTCTTGCACTTGCCATCTCCAGACACTGCTCAAGCCTACAGATCTGAACAATTATACGAAGGTCCAGCTGACGATG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:2
+chrIV_1244113_1244597_3:0:0_3:0:0_7	147	chrIV	1244398	255	200M	=	1244113	-485	TAGATTCTACGCCTTAGGTAGAGTTTTTGCCGGTACTGTTAAGTCCGGTCAAAAGGTCAGAATCCAAGGTCCAAACTACGTTCCAGCTAAGAAGGACGATTTGTTCATCAAGGCCATTCAAAGAGTTGTTTTGATGATGGGTAGATTTGTCGAACCAATCGATGACTGTCCAGCCGGTAAAATTATCGGTTTAGTCGGTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:2
+chrIV_1284104_1284638_3:0:0_6:0:0_c	163	chrIV	1284104	255	200M	=	1284439	535	TAATCCATCTTGGTTGTTTTATTTGGAGATGCAAACGCTAAACTCGTACCGGCCTTTTTCAATTGGAATAATTTCTAAGTTAATTTCAGAAACTTTGGTTGTACTGATTGGTTTAGTTAACGAACCATTATACAAAATTCGTCTGTTCGATCTTGGTAATATTTTTGATGTCTTGCTGTCGAAAATCACGATGTCGAAAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_1284104_1284638_3:0:0_6:0:0_c	83	chrIV	1284439	255	200M	=	1284104	-535	ATATCGTGTAGACCATCTTGTGATCAAACTTTTCTATGAACTTATTGAAATCCACCGAAACTGTTACAGTTTGGTCTGTGGTTAATTTCCAGTTACTTTTAAGCTTTCTAATGATATGTTCGCGACACCAAAAGTTTTGTCTCATTTCTATAGTCTGTTCTTCGTTTAAACCACTTTGAATAAATTGTCGGCCTGGATAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_1330536_1331017_4:0:0_2:0:0_13	99	chrIV	1330536	255	200M	=	1330818	482	ACGAGAATCTCCTCTTCAACATACGGGCAGGATAATATAATTGACTATACTGATAATGAAGCCCGTTTTTTGTTATCTTGTGAGATAAGTCAGTGGACACTTGATCTAGCAGTAGACCAGTTTCCCCTCCCCCAAATAATACTAGAAAGTTGAGAAACTACAGAAATCTTGTAATTTAACCATTTTTTTGTCCCAAGCCG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_1330536_1331017_4:0:0_2:0:0_13	147	chrIV	1330818	255	200M	=	1330536	-482	GAATAAGCGGTAAGATATCGAACATTCACAAGAAATAAAGTACCAGTTAAGAGGTGCAATTGAATATATACAATATCCTATCATCTTAGTCCTTTGAGTATGCAAAAACCTACAAATATAGTTGTTAGTTTGGGTCAGGCTAATTTCAAAGAATTTGAACTCCTATAAAGTTAAGTTGAAGAAACTAATAAGTAATATTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_1429030_1429503_8:1:0_4:0:0_11	163	chrIV	1429030	255	200M	=	1429304	474	TTGGAGATATTTACATTCACGTCACATATATACGCCACTGAAAATTTGACAATAGGACGTATCTAAATAATAGCCTTGCTTTTTTTTATCAATTCTCGCTAATAAATTACTCATCCGGCAATAACCTATGCTCACCCGCCTCGAAGCGGCGTTAGGAGATAACAGTGGCCGTGTAGAGGGACGTCTTAGCATCGAAATCC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_1429030_1429503_8:1:0_4:0:0_11	83	chrIV	1429304	255	200M	=	1429030	-474	GTTTTTTTCGAGCCAGCGTGCACGTAGTACGGGCCCCCCTAACAACTATGGCGCCCCTATGATAGCTTTCCCTGCTCGCGCGTCCCACAGCCGCACCGTCCAGTCCGTGGAACATGATAATAGAAGCATTAGCCGCCGAGCATCGGCCCAATGAAACTCTAACACGGTGACCCTCGTAGAGTGGTTTTCTGCAGGTTGGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_1492123_1492615_1:0:0_5:0:0_2	163	chrIV	1492123	255	200M	=	1492416	493	TACAAACTTTGGGGAGAATACTTTATAAGCTCGGCCAAAAAAGCTACTACCAGCTAGTGCCAGAAATAGATGCAGACACATACAAGGAAGACGGAAGCATATCGAACGTTATGGATAAGATCTATTCCATGTTTTGGGACTTGATTAAAGACGGAAAAGTCATCGAATCCTTAGAAATCTCCTCTGATGAGAAATTCACT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_1492123_1492615_1:0:0_5:0:0_2	83	chrIV	1492416	255	200M	=	1492123	-493	AAAATAATAGTACATACAGGTGCGCCGACCAGCGCCTATTCTTAAAAACAAGAATAATGTGTCTCTTTGAGTCATGTTCCGTAGCTTCTTTTTTAAAAAAACTGTCGCAGGTATTTTCGCTTCGTTGATCTCCCATTCTCCATATCCCAACCACGTTCATATACCTCAAGCCGATTTCAACCAAACTTGAACGAAAAACT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIX_80744_81245_3:0:0_7:0:0_2	163	chrIX	80744	255	200M	=	81046	502	CTTCAATAATACTTCTTGCAAAAGCTCTCTACGTTCTCTGGGTGAAGCATATGCCAAATTTGGAATGTTCTCCATTCCGTGTAAATGTGTAATGACTTTGAATGCGTAACCTTGAACTACCAAAAACGCTTGTCTCTTTGTTGAGTAGTACATTTCTTGGGTATCCTTAGAAACCAGAGAATAAAAGAACGCATTGAAAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIX_80744_81245_3:0:0_7:0:0_2	83	chrIX	81046	255	200M	=	80744	-502	CTGGTAAATCGATGGAAGTATCACCAACTTTTGATAGAAATATGGTATTGATTTGGTCTTTGTACTGGAAATTTTGCAGAATGTTCATACGCTCTTGTTGTGGTGTGGAACCATAAATATATGGTTTTCCCATTTTCAAAGCATATTCTTGTAAGCCGTAAACATTATCGCAAATAACGATGATCTTTTCACCCCTCCTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIX_112304_112798_3:0:0_6:0:0_3	99	chrIX	112304	255	200M	=	112599	495	CATTGATTAACGGAAGTTTGTTGTTGAAAGATGAGGAAACGTGCCTTTTCATGCCAGGAAGATTATTGGTATTGTTATTATGTTTGTACTTTGAGGTTGTATTACTGGAAGATCTTGATAGCCGCCTATTCATTAAAAAATGAGCCTGCGAGGGATGTGCCTTTTCAAACTCATAGTCTTTTAATAGTTTTTCCATTTCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIX_112304_112798_3:0:0_6:0:0_3	147	chrIX	112599	255	200M	=	112304	-495	AGTTTTAATAATTTCATCAAAGCTGGGATCAACGACGTCACCAAGAATTTCGACAATTGGGGGTTCCGCCATGTCCAACTGCTGTAGACACATATTTAGTTTGTTCTCCGCGTAACGAATAAACTTTGTAAAAAGTAGATGAAGAGCATATTCAGAGGGACTTTTCCAATCTGTAGCCATTTGATGTCTCAAAGTAGTCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIX_267301_267746_2:0:0_8:0:0_1	163	chrIX	267301	255	200M	=	267547	446	GTCGATGCTATTGACCCTGGAGTCAGAACGACCAGCAAGCCCTGCCGCATATAGACTCGTGGACATGTCAACATTCGAACTAGACCGGTTCAAGTTGTCGCGCTCATAATTCTTCTGGAGCGAGTAATAGTGCAGTTGCGACTGTAAAACCTCAAACTTCTTGTCGCACTCCTTTAGCAACCCAAGGTAAAACTCGTTAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIX_267301_267746_2:0:0_8:0:0_1	83	chrIX	267547	255	200M	=	267301	-446	AACCAACTCCCTCTGCAAAGCAGAATAGTCCGTCTTGAAAGCAGGTACGGAGCGATAGTCTCCGTCGCTGCGACTTTTGCCCGGCTCTCTCTGCTGAAATGCAGTCTGCTATACCGACACAGAGGGCATCCAGCTCCGGTAGGAGCTGGATTGCTCTTCTTAGGCATCCAGCTTCTCCTTGTAGCGGCGAAGATTCTTCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIX_317800_318294_1:0:0_6:0:0_0	99	chrIX	317800	255	200M	=	318095	495	GTGGTGGTAACCATCAACATATTGGTAAGGCTTCTACTATCTCTAGAGGTGCCGTTTCTGGTCAAAAGGCTGGTTTGATTGCTGCCAGAAGAACCGGTTTCCTACGTGGTTCTCAAAAGACCCAAGATTAATCTTTTTAATTTTGGTTTCTTCCTTCTGTCATATTATTTTATCAATTTTCTTAAATATTATATAATTTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIX_317800_318294_1:0:0_6:0:0_0	147	chrIX	318095	255	200M	=	317800	-495	TTTTGTTAAACGTAAGCTTGCAGTTATGGATTCTTCTGCGAAAATACTATTTAAAAAACGATAGCATAAATTAATTGTAGGAAATTCTACGAGTTCTGTGCATTCATTTAACTTTCAAATGCAGGTCCATGTGATATAGTAACGTTCTGGCCTTGTCCCTGACAGATTATGATTCGTCTGTAATATTTTTTCTAACCAGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIX_363622_364118_4:0:0_3:0:0_4	99	chrIX	363622	255	200M	=	363919	497	ACCTGCAGACGGTAAGACGAATGGCACCACTAACGCTGTTGATGCAGCATTGGGCAATACTAACGAAAAAGATGACAAAAATAAGGCGAGGACAACTTGTGGTCATTTAACTGTACCCGATGGAAACAAGAAAAATGAGCAGGTAGGAGCAGAAGCTAAGAAGAAGAAGACAAAATTAGAGCAGATTGAGGAAGAACAAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIX_363622_364118_4:0:0_3:0:0_4	147	chrIX	363919	255	200M	=	363622	-497	TTCCTTTAAAAAAAAGTTCGAAGAGGAAGCCAATCGTTTAAAGATGGAATCATTTGGTCTGGACATATTACACACAATAGGCGACGTTTACTACGATAAAGCTGAAATTTTTCTTGCATCCCAGAACCTGTTCGGAATGGGTGGTATATTTCATTCTATGAAGGCGAAAGGGGGAGTATTTATGGATACACTAAGAACTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIX_372554_372983_9:0:0_2:0:0_5	163	chrIX	372554	255	200M	=	372784	430	ACAACCACCAAGTTTCATAAAACCAGAAAATCATTTAGATTTGGATAGTCCCTCGTGCACTTTAAAGAGCGACTTGTCAGGGTTCAGCGGTCTTGATGCTATAATGAGACCATTCCCCATACCAATTCACGGAAGATTTGAGTATGCTGAGTTTAACTAATGTAATAAATCCTACCTTTTGAAATTATTAGGTAAAACTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIX_372554_372983_9:0:0_2:0:0_5	83	chrIX	372784	255	200M	=	372554	-430	TTTTTATACCACGGCACCATTTTACACCTAGCCGGTTGTCAATTCGTTCATCATCAGGTCATTATACCTATAACACTGACTACCAGGTTCTTGAATGGTTTCACGAGCCTGGCCATCAGTTCATTGAAATTTGAGCAAAATCGAAGTCAAGGCCCAACACCCCTGGAAGTGACACTTCGAATGACTTACCAGCGGAATGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIX_405615_406160_6:0:0_3:0:0_6	163	chrIX	405615	255	200M	=	405961	546	CAATTAGCAAAAACAGCACCACGTTGTGGTTTCTTCTTGAAATCTACTAATCTGGGCGAATACTCAACTTCATTGGGGAACAAGCATTGATCAATGAATCGGTTCGTTTCCTCGAATTATTGCAGCACATCAGTCACATCATCATCATGGATGGGTATGTTTTTTAGCGAGTAACCTTTCCTTATTAGATCCTCTGGAAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIX_405615_406160_6:0:0_3:0:0_6	83	chrIX	405961	255	200M	=	405615	-546	CCATCGTCCCGGTAATTTCTTGCTGCTTGTACTGCTTTCTCTGCGTTATACCTGTATTAGATGCATTCGATGAGCTGAGGTATAATTTTTTTTTTCAGTTAGATTTCTTTTTTTTAGCGCTAAGAAAATTTCAAAATTGCAGCCGTGGAGACCCAGATGGATATATTGTAGATCATTAAAAGTTGTGTCATCTCAAACTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrM_7124_7740_3:0:0_7:0:0_0	99	chrM	7124	255	200M	=	7541	617	TTAATTTTCTTATTCTTAATAATATATTTTAATAGTCCTGACTAATATTTGTGCCAGCAGTCGCGGTAACACAAAGAGGGCGAGCGTTAATCCTAATGGTTTAAAGGATCCGTAGAATGAATTATATATTATAATTTAGAGTTAATAAAATATAATTAAAGAATTATAATAGTAAAGATGAAATAATAATAATAATTATA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrM_7124_7740_3:0:0_7:0:0_0	147	chrM	7541	255	200M	=	7124	-617	ACACTTAAGCAGTGGAGCATGTTATTTAATTCGATAATCCACGACTAACCTTACCATATTTTGAATAGTATAATAATTATTATAATTATTATATTACAGGCGTTACATTGTTGTCTTTAGTTCGTGCTGCTAAGTTTGAGATTAAGTTCATTAACGAACAAAACTCCATATATATAATTTTTATTAGATATAATTTTATA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_573344_573800_1:0:0_1:0:0_1	99	chrV	3155	255	200M	=	3412	457	TGCTAGCAAGATCATCGTAGATCCCCACGTATAAATCAGTAACGCCATCGCAACCTTCTTCAATAAAGTTTCTTACAGGGGCCACATTCAATCAACCGCATCGGCTCAACCTGATCATGCAATTAGCAAGCAACACTGTGTACGGTACAAACAGAAACGACACATATTTCACGTCGCCCTTAGACGCCAGTGCTATCAAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:6
+chrV_573344_573800_1:0:0_1:0:0_1	147	chrV	3412	255	200M	=	3155	-457	GGTGTGTCTGCCATGTATATTTCATGACATAAGCGCAACTGATGCAAGTCCCTGAATTCAAAGGAGCTGCCAAAGAGTTTCTGGCCTGCGACGAGGATATCGTTTGTACTCTTGGGCTCTCGGGGCCTTTTTCGCGTTACTCTGGAAATTTTTTGATGATGATCTGAACTCGCCGCCTCACCTGCCACTACGTCTTCCGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:6
+chrXII_1065644_1066121_6:0:0_4:0:0_5	99	chrV	5546	255	200M	=	5824	478	TTTGATTAGGCCAGACTTTTCGTCTTCGTAGAATGACCGCACTTGCGTGGGGATCGATTCAAATAAAGTTATTGAGGGACAATGTACGAAGTCGTTTTTGTTATTTAGCGCCGACTCAAACTCGTCAAAGTTTGCTTTTTCAAACTTACGCCTATCGGAAACTTTCAATTTATTTTTGTAAGTTTCGAAATTAACAATAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:2
+chrXII_1065644_1066121_6:0:0_4:0:0_5	147	chrV	5824	255	200M	=	5546	-478	CTAAGAATGGAATATTTATGCTATTGAGAAGATGCACAATCTGCGCTATGCAGGTGCAGCAAAAGCAAACAAAATCTCACTAAGATAAGCGACTGTCTGTACCCTTCAAGCACAACATAGAAAACAGAAGGATGTCTCATTCATCGCTTGATTTCCGGCCTGCAAAAATAAAGGAGTCGGTACGTACTTTCGTTTTCAAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:2
+chrV_124419_124957_4:0:0_4:0:0_5	163	chrV	124419	255	200M	=	124758	539	TTAGTGTCATACTACATCAAGTTCATCCGCTACGACCTGAACATCGAGTTGGACCCGAAGACTTTCAATCTCACGAAATTCTTGAATTCTTTGGCAATCTTCAAAACTTGTAATAATAAAAACATAGATTTCCATTCTTTTCGATGTGTTAACCAACTATGGACACAACTCTGTACAGTGAACCTTTCCCTTGGTATGGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_124419_124957_4:0:0_4:0:0_5	83	chrV	124758	255	200M	=	124419	-539	CTTCTTTGTCTTTTCTTCTCCCAAAAGCGCACTTGCCTTGAGCAGCATATTGTATACTTCGATGTTTTCAAATGGAGGTACGACTTCATTGTTGAACATCGGACCCATTCCAATGAATATACATGCCATATCACTACAGTTGTTAAAGTTGTATCCATGTGTGCCCATAAGGCCGATAGGCACATCAACCATTTCTTTTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_151218_151704_3:0:0_8:0:0_2	99	chrV	151218	255	200M	=	151505	487	TCATGCGCTTGTGATTATCGTATAGTGTATATATATAATATATATAGATAGCGATAAATGGCAAGATCCTCTATGATAAAAGTCAACATAATGAAAACAGATGGCGCTTGTCTACTGTTTGCAAGGCTTGAAATCACAGGTTTTTATTATATCGTGGATTTTTGCCATTGCCTAACTCAAAAATAATGATCGATTTTTTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_151218_151704_3:0:0_8:0:0_2	147	chrV	151505	255	200M	=	151218	-487	AAATATTCATGATATTGATTACAACGTACTTATTTTCTATGCGTAAACAACTAGAGTTGACAAATATTATAAACTAAAAACTATCTTATTAATAATATACCTCCTAGCACTTCGTAATGTTTCTGTCATGGAATGGCGAGAACAGAATTTGAAAGATTCAACACCTTAAATTGTTAACCTTAACAAATGAAGTAAATTCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_234738_235208_3:0:0_5:0:0_3	163	chrV	234738	255	200M	=	235009	471	GAGTTAACGGGCACAGCGTCAAAAAATCCGCCACCACAGTTGATCGCGCCGAAAACGATGGAGTTGCGATGAGTAAAATGAAGGGCATATATAAACAAGAGTAGACAGAGACACATTTTTCAATAACATATATATAGATTTAATTGGAAAGACAGTTATATTCTAACGTCCAAAACTTAACAAGTAAATCAAGTTGCAAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_234738_235208_3:0:0_5:0:0_3	83	chrV	235009	255	200M	=	234738	-471	GTTTTTGGGGTACAGAACATATGTATAGGAAGTATTTGAATGAACGGATAGTGGATTGTAAAGTAGGTTACGCTAATGGAGAAGTGTCTAAAAAGGATAGCCCCTATAGTGTCTCTTATTAGAGAGTTTGTGGTGGTGACACAGATTTTGCGGAGGTTTTACAAGTATCCTATAATCCCAAAGTGATAACTTTGAGAGAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_278567_279041_6:0:0_2:0:0_6	99	chrV	278567	255	200M	=	278842	475	ATGTCCAGTGGCTTGCTTTTGGATCTTCCTGGTAAGCGTGCTGAGGCTACTGCCAGACACTCTGCTTTATCGCCTAGTAAAGTTTATGTAGCATGTGCATTGACGTAGTCAAGATCATTTGGTTCTAATCTAGCCATTTTTAGAGCCATCTCTATTTCTCTTTTGGCACCATTTCCATCAGCAGGAGGGGAGGTAATATG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_278567_279041_6:0:0_2:0:0_6	147	chrV	278842	255	200M	=	278567	-475	CGATTCCATGACAATCATTCCGCATCCTTCACCAAGTACGAATCCAGAACGTTGTGTATCAAAGCGTCTAGAGATCCCGTTTGTAGTAATCGACTTTGCTCTGATGAAACCTGCTAAACTTAACGGATGCAAACTCGTTTCACTTGCACCGGCGACACTGATGTCTTGCATGCCTAACCGAATAAAATTGAATGCATCGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_436297_436806_7:0:0_5:0:0_7	99	chrV	436297	255	200M	=	436607	510	TATTGGTGAAGATTGAACATTCATTTTCTTATGCTTATATAATAGAGGAATGAACACACGCATATAGGATCATTATATAGTTATGGCTCGTATTATCATGGCTCTGGTCATTTCATACATTTGATGTCGTCACGACTCATATTATTTGCTCATATAAATAACTTCCTCAAATATATAAGTTCCTCATCAAGTTCAATTAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_436297_436806_7:0:0_5:0:0_7	147	chrV	436607	255	200M	=	436297	-510	GAATAAAAACCAACTATCGTCTATCAAGCGAGGCGCTGAAATCCTACTATTCGCTCGAAAGACCGCTGAACGCAGGAGAGTCTTTTTTGATCTTGAATTTCATTTGAGTATTTTTGTTCTACATGCTAGTTTTACGAAAATCATCAATCTATGGCAGGAATCATTAGTGTTGGAATAAGAAATGCATATTTGCCTGCGAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_219746_220211_0:0:0_2:0:0_f	163	chrV	448057	255	200M	=	448323	466	TATATTCGCCAGATAGACCTCTCATAATTAATTGGCATGCGACCTTGTTATTGATATGAATGCCATTATTGTTCAGTCTGTCGATAATGTTTGTGACTTTTGTTTCAAATGCATCTGCAGGTGTACTGCCATTATATTGCAAATTTGCCAGGGTCACAATGTCGTTTGCCTCTTGGGTATCAGATTGCATTTTTTCAATA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:3
+chrXII_219746_220211_0:0:0_2:0:0_f	83	chrV	448323	255	200M	=	448057	-466	AGGAATTGAGAGGGAGCAAATATTTGAAAAGTGTTATACAAGAAGGTGAGTTCATCATCAGTGATCTGACGTACGGGTTTTCCGTTTACTGTCGGAATAATACCACCGAGATGCGAGTTTTGTAAAAATTTGTTGTATGTTTTAACCCAATTTGGAAAATCATTAGGTGAGGTTAACATTGGTGGTGGTCTGACATATTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:3
+chrV_479347_479873_3:0:0_3:0:0_4	163	chrV	479347	255	200M	=	479674	527	ACCGTAGTTGTAGTAGTAAAGCTTTTATAAGTGTTGAAGAATGTTTCTGTGAAAATCTCATTGTCGATAGTTAGTTTAACGAATGCATAATCTAGTAGTCCTATGTTATCATGGGAAAGCCCTCTGGTAGAATGACCCCTTTGTCTTTGATGATAGTAATAATTCTCAAGGTCTTTAGTGTCTACCAATTTTGAAAAGAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_479347_479873_3:0:0_3:0:0_4	83	chrV	479674	255	200M	=	479347	-527	AATGTCTTACTTAGTCTTCCAGTGGTATCCAAGGAATCTCTCATCTTTTGGTTTGGAGTAGCTGGATTATTAATAAGCATGGAAGAGTGTTGTGAGAATCTCTTTGGTGGTTATATGACCATACTAGCAGGACGGGATTTACCATCATTATCGTATACCGATTTAAATACGAACTCATCTGATATATGAAACACATCCAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_482784_483296_3:1:0_7:0:0_0	163	chrV	482784	255	200M	=	483097	513	GCTTGAACTAGCACTGGCCGTTGAAGATTTCCTGTTCTTAGACCAGAGAAGACCTTTCATTAGACTCCTGCTTCGTTAATTGTTTTTTTTGTGTCTATCCAGAAAAGGCACGATGACCGTGTGTTCTATTAAACTGAAACGTTTGCTTGTTTGTTCTGTTGGAAAAAATGGGACTGATCTGCAGTCTCCTAACCAAAGAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_482784_483296_3:1:0_7:0:0_0	83	chrV	483097	255	200M	=	482784	-513	GCTTGATTCTGTTGTTTTTGTTTTTTGTGCAACAAGAGCCGTCTGATATCTTGTGTTCTCAGGTCATTTGCAAGAGCGTGTTTCACCGAGGGGAATATGTTTCAGGATTCGCGGAGGGAAGATTTTTGCTTGCATTAAAGATTTACTTACTATACAGAATAAATAGTGGTATTGTTAAATATGTTTAAATAGATAAGGGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_498912_499362_2:1:0_5:0:0_8	99	chrV	498912	255	200M	=	499163	451	TTGTAAGGAAACGGGTTGTGGAAAAAAAAAAATACAACTACGTTGCCGCGAATCTTGTTGAAAAAGGTCTGAAATTAAGGCAAAAATGATACTGGAATTGTTAGTCTAGTATAATCGATCAACTGCAACAACCAAGTCTTTAAATTTTCAGTCCCTCTTGAAAGAATAGTGAAGGTTCATTTTTATTTTTACATAGTAAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_498912_499362_2:1:0_5:0:0_8	147	chrV	499163	255	200M	=	498912	-451	GCATTTCATCACTGTACGTTTGAAAATCGGAAAGGCAAACTGGATAAATGGAAAACGCTATTACAAAGGGGATGAAAATGAATGTTAGAAGTGAAACAGTGCCTCGAAACAGTTCCCAAACTCTCTACGACTTCATTAGTCATTTCACGTCCATATATCAAAACATATATCAATATTCCTTAGCGTATGCCCTTCTTACG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVI_18396_18897_3:0:0_4:0:0_0	99	chrVI	18396	255	200M	=	18698	502	GCACTCATCCAAGGATGGCGCTATTTCGTACCTTTTGATGCGGGCAATTTTGTTGATGCTTATAACCTTCTGCCTGTTGGAATTTTATTGTCTATTGGCATATGTGTTTTTAAGAGCAATCATTTTAGAACTGTTGATTTGCGGTCAATCAACCTAGACGAAGGACGAAGAAAAGACATGGAGGCTGATCTTTCTGATCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVI_18396_18897_3:0:0_4:0:0_0	147	chrVI	18698	255	200M	=	18396	-502	ACCTATTTGAGAATTATTTTACCGTTTTACAGCCGCCCCCCCAGGATAAATATTTCAAGTTGTGGGAACGGAAAAGGGCCTTACATACTCTAGTGAGCATAACACGTACAATGAAACTATGATTAAGTCTTCTGCGCTTTTTAGAGCCGATGTAAAAAAACATGATTTTTTATAACCAATGCATGAAGTATAATTTAGGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVI_38233_38753_3:0:0_4:0:0_2	163	chrVI	38233	255	200M	=	38554	521	TGTTAATACCGGTTTGCAGAACGTTAGAAAAGTTAGGACAAAAAAATGGAAAAAGTACTGGCAGTACAAGGCAGGTATTCCTATCGGTTTGAAACGGTCTCAATTGGATGAATTCAAAAATAAATATATGAAAGATGTGTTGGCGCAAACGAGTGTTCCTACAAATTTTCACGAAATAACGAATACGGATGAAACAATAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVI_38233_38753_3:0:0_4:0:0_2	83	chrVI	38554	255	200M	=	38233	-521	TGTTAAGCTGGACAATGAAGTAAAGAACACAAATGCTAATCCAGTGGTGGCGACGGATCCGGTCGCCGCTAAACCGGACAACCTGGCTAACTTCAGCAACGAAGTAGCTATGAATAATTGAAAGAAGTAAAACATAATGTAGGCAACACTCCAATAAGAAATAAACAATTGGTGAAGTAGTAATATAAACTATCGTTCGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVI_118934_119464_5:0:0_3:0:0_1	163	chrVI	118934	255	200M	=	119265	531	TTTTCAAGTTATCAAGCGTTATGTTTTGAAACATCTGTTCCGTTTTCAGTTTTTCAAAAAGATCGATATTCTCTTGAGAATTAGGAAGTTCTACGCTCAACCTCCCGTGGGCAGAAGAAAAACAAAAGCTACTACAATTGTGTTAGAATACAGTTCTAATATTATCAAATAAGTAGTATTCATGTTACTAGTATATTATC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVI_118934_119464_5:0:0_3:0:0_1	83	chrVI	119265	255	200M	=	118934	-531	ATAAACACGTACGCGAAAAAAAAATAAAGTATCAATAACGCGTAAAGTGAATAGAGTATTGGATTCTATAAGACCGAAGACGCTAATATCACATCTCATAAAATCACTTAAAGCAAGCATCCAGAGGCTATTGATAAAAAGCAGGCACAAGGAGACGCAATGGGACGTTTAGTTGGCTTAGAACTAAGTAATTTCAAGTC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVI_184780_185293_1:1:0_8:0:0_3	99	chrVI	184780	255	200M	=	185094	514	TTCGAACATTAAAGCTAATGCTAACACTAGTACCAGCGTGAATAAGAAAAATTTGCCGCCAACAACTAGTGGGAGGATACCCTCTAGCACCATCAGGAGATATCCGAGTCGCTATAAGCCTTCTCACTCGCTGCAGCTTCCCATTAAGAACGACTCCAACTTTAAACGATCTAGCATATATGCCTCCAAATCCACTGTTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVI_184780_185293_1:1:0_8:0:0_3	147	chrVI	185094	255	200M	=	184780	-514	CTTCTTCCTTGACCGCATACCTGTCCAAGAGTTTCCTGTTCGCATTTTATAACAACCGCAAGAAGGACATGACCAGTAACAATGGTGTCCTCTCAAAGGAATATTGGATCAAGGACGAGAGTTCTAAAGAATGTTTCAGTTGTGGTAAAACGTTTAACACTGTCAGAAGGAAACTCCACTGCTGGATAGGCGGCCAAATT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_48887_49401_7:0:0_6:0:0_6	163	chrVII	48887	255	200M	=	49202	515	CTTCATCTTTTAAGTTGGGGAATCCTGTGGACTTTGCTCTAGATGATAACTACGATACGTTTTGGCAGAGCTATGGAGGGCAACCACACCAATATGACATTATGTTTAGTACGAGAATGGACATCTGTGTGATGGCAATATTCTTTTCGATGATTGCGGACGAGTCCTATGCTCCAAGCTTAGTGAAAGTTAACGCGGGG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_48887_49401_7:0:0_6:0:0_6	83	chrVII	49202	255	200M	=	48887	-515	TCATCACGCTTTTGTTTCCAGTCAACCATGAAAACGGTAAAGATACACATCTGAGAGGCATAAGGCTATATGGTCCATCTAATGAGCCACATCAAGATACCCATGAGTGGGCACAGACCCTCCCAGAAACTAACAATGTCTTCCAGGATGCTATATTACCTTAATAATTTGCCGTTTATGATATTTTCTTCCGTGCTATT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_79245_79829_5:0:0_0:0:0_10	99	chrVII	79245	255	200M	=	79630	585	TCTTAAAGTCTTGCAATTGAGTAATCAATTTATTTCACAAATCTGTCCGTGTCTCTTGCGGGCATTTATACAATTCTAAGTTTTGTAGGATTTCAATCGTAGGCTGCACCGTTTGATAAATATGCAACGTGGTATCATTGGTTAAACCTTTTGAATAGAATACCGCTGTATCAATATATTGTTTCAATGCATCATCATCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_79245_79829_5:0:0_0:0:0_10	147	chrVII	79630	255	200M	=	79245	-585	AACAATCGCGTCCTTATATTGCTGATTGGAGTGATATTGATGATCTTTGCTGTTGGCACTTGATATCAGTAACGCTTGAACGTTATCGTTAAATAGTGTCTCGAATAGGGATTCATTGAATATAGAAAGTAAATCATCGTCCCACTTCGAGGAAAACTCCGTGTTTAGTAAATTGTATAGTTTTACCCACTGTAGTAAAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_85765_86253_2:0:0_4:0:0_1	99	chrVII	85765	255	200M	=	86054	489	AAACAGGACTACGTCACCGACGGAAGCAAACGAAGTATCTTCACGATCTCATGCAGTGCTTCAAATACACATCATGCAGACAAATAAGCTTGTAGACTTGACCTCGCAACATACAATTGCTACACTTTCAATAATCGATCTAGCTGGGAGCGAAAGAGCCGCCGCAACAAGAAACCGTGGTATAAGATTACACGAAGGTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_85765_86253_2:0:0_4:0:0_1	147	chrVII	86054	255	200M	=	85765	-489	AGGGATTCCAAGTTAACTAGGCTGTTGAAATTTGCACTGGGTGGCAATTGCTAAACAGTCATGATTGTTTGCATATCGCCCAGCAGTTCACATTATGATGAGACATTGAATACTTTGAAATATGAAAATCGTGCTAAAGAAATAAAGACCAAAATAATCAGAAATCAGCAGTCTTTGAGTAGACTCGTTGGATCTTATTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_131596_132048_5:0:0_4:0:0_8	163	chrVII	131596	255	200M	=	131849	453	GGTGTCTAAAAGATTTCCGTTTTTGCAAGATATATCACAATTAGTTCGTGAAGAAACATTGGAAAAACCTCAATTATCTGAAATTGCTTTCGTTTTATTGAATACCTTCACGATTTACGAAGACAATAGGTCTAAAAGTTTGGTAACTTCAATATTGCTTGACATCTTAAATCTAGAGCGATGTCTCCTAGAAAACTTTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_131596_132048_5:0:0_4:0:0_8	83	chrVII	131849	255	200M	=	131596	-453	GATTACCTTAATTTGTTAGATTGGATTAATTCTTTCTTGATTTTTGTGTAGCATAATTCTAATTTATTTGATGAGTACATTCCAAATTTGTTGGTCGCCCATTCTTATGCAACGTTCGGTGTGGAAACTATTCTTGACAAGCAAGAAGAAGGCAAGAAATCCCAAGATAAGCAGAACCAGCATAGAAAGAGAATTCGTTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_166337_166856_4:0:0_6:0:0_c	99	chrVII	166337	255	200M	=	166657	520	GCGAGGTTCTAAACATCTGGCCAACCCCTAAATTTTTAATAATTCCGAAGCTGGATATATTGCATCTGGCAATCTGAAAAGCAATAGAAAGAAGCGGCCTAGTACTGCATATTGAGTGATAAAATATACATATTAAGGTTGGGGAAATGGTACGCGCTTACAAGTAGCTAGAAAGATCTTAATGTTCTGAAGTACGGTTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_166337_166856_4:0:0_6:0:0_c	147	chrVII	166657	255	200M	=	166337	-520	TAAAAAAGGTTATAATCATCCAGATTCCTTATTTTTTTTCGTCTTTCGCCAGGTGGTTTACCCAGCTTAGACTAACCTTGTGGTTCAGATTACACTAGTATTGCCGTCCGATATTACAATTCTGAAATCAGTTTTCTTGTGATCATGCTTTTTTTCTCTCTTGCCATTCTTAAACCTGGCCTACAAGAACTCTTCTTCTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_258548_259029_4:0:0_4:0:0_b	163	chrVII	258548	255	200M	=	258830	482	CCGTTCCAACAGTGCCAATGTTTCATCCCCAGAAAGTGAAAAGAATAAACGTCAAAGTAAATCATCGGGTAAAAGTAACACCTCAAACGATGCTTCTAACCAAAAAGCAACCAAGAAAAAAAGAAATCCAACCGAAGTAAATGATTCTGAGAATAATTCTTCGGAAGAAGACAAGAAGAAGGGTCAAAATGTCACATCAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_258548_259029_4:0:0_4:0:0_b	83	chrVII	258830	255	200M	=	258548	-482	TGCGGAGCCTCAGGCTGTAACAATAACGAGCATAATGGATGACCTAGCTTTGCCATATCAACATCCACCGAACATCTTTACAAACTTAACGTATTATAATGAAAAATTAGAATGTATTTCATTAGGTTCTACTAAACTTTCCAGACCTGTTGAGTCTTTTGGAAAGCTATTACAAGCCTATCAGTTTCTGAATACGTTTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_461541_461988_0:0:0_4:0:0_9	99	chrVII	461541	255	200M	=	461789	448	GAGAAAAAGCTCGAACTATTTGTAGCACTTCACTGTATTGCTAACAGTTCTTAAAAACTTCAGAACATATAGATATTGCTAAACACAGATTTGAATACCATAGTAACTAGTCTCTTATTCTTAGTTTTTGATGAGCTCCATTCACGAGGTTGTGGCTCTTATTGAAGAGCTGTACTCTCCTCATCCGAAACATGATGTTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_461541_461988_0:0:0_4:0:0_9	147	chrVII	461789	255	200M	=	461541	-448	TCCACCTAGCTAAGGAGCTTTTATCTGATGACAAGTACTATGCGAATGTCAAGTACTTTGGTGCACTGACTTTAACTGTGCAACTAAATACGCGGGGTGAAAAAGATTATGAAACCCTATGCAATGTTTTCAGGTCAAATTTATTGTACTTGACGAAATTCAGTACATTGTACGTTTCCAATCCTAATATGTACGGGCAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_463361_463814_7:1:0_2:0:0_e	99	chrVII	463361	255	200M	=	463615	454	CATGGATTAAACATATCGTTGATGCCAACAAATTCTTGAACCAAAATGTCATAACCGTCTTCCAAACTGGTTTCCAAACTAGTGCGAGTACAAAAGTCAGTCAAATTATGAAACTTGACTTCGTAAGAACAAGTACAACTTTAATCGGCACTTTGGCAGGTTATATTAAACAGGAACCTTTTGAATTAAACCCATACGTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_463361_463814_7:1:0_2:0:0_e	147	chrVII	463615	255	200M	=	463361	-454	CAAGAAAAAATTTCGAACGATAAACTTGAAGGTATGGTTATCAAGACTGTTTCAACATTATGTGAGACATGCCGTGAGGAGTTGACTCCATATTTGATGCATTTTATAAGCTTTTTAAACACAGTCATTATGCCAGACTCCAATGTTTCACAGTTCACTAGAACTAAATTGGTTAGATCTATAGGTTATGTCGTTCAATG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_530414_530972_2:0:0_5:0:0_d	163	chrVII	530414	255	200M	=	530773	559	TACATGTTTTGTGTTCAGCCTAAAAAAACGGATTTCATTGACTCTGACGGTAAAATTGTCACAGCTTATCGTAGTAACAATTTCACCAAAATATGGTATTTCTTGCTGGGTAAAAAAATTGGTGAAACAGAAAGATTCAGCTCAGATTCCCCCATCGGCAGCAATAATATTGAGAATTTTGGTGATATCGATCCAGAAGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_530414_530972_2:0:0_5:0:0_d	83	chrVII	530773	255	200M	=	530414	-559	AATGTCGAATAGTAATAGTCAAGATTACAACCACGCAGATGAAGTAATGCACGATGAAAACATTCATCGTGTTTATGAGGACAGCGAAGCTAGCAGCGACGAGAACTATTACACGAAACCAATCAACGGCTTTAATATCACGAACTATTAAATCATAGCGAAAGCAGCTTTGCCATAACTTTTCTTCTTAAAATCACCCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_542196_542637_2:0:0_4:0:0_3	99	chrVII	542196	255	200M	=	542438	442	AAGGAAGCCCAATGTCTCGCAAATTTGATTTAAAACCGATTACTGATCTTTCCGTCCTAGTTGGGACTGGCATATCATTATCCTACCTGGTCAGTCGGCTACTCAACGATGTTGAATCAGGACCGTTATCAGGTAAATCAAGGGAATCAAAGGCCAAACAGTCCTTGCAATGGGAAAAGCTGGTGAAAAGATCACCGGCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_542196_542637_2:0:0_4:0:0_3	147	chrVII	542438	255	200M	=	542196	-442	TCTTCTATCGTTACGCCAGATGAAATTAATATTACATTCCAGGATATTGGTGGCTTTGACCCGCTTATTTCAGATCTACATGTAAGTGTCATATATCCCTTGATGATCCCAGAAGTATATTCTAATAGCCCTTTACTTCAAGCACCTAGCGGTGTCTTGCTATATGGGCCACCAGGATGTGGTAAAACCATGTTGGCGAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_681272_681783_6:0:0_2:0:0_11	99	chrVII	681272	255	200M	=	681584	512	TAACCCGGCTGTATCAATAACGAGTAATGGGCTGATGCTCCAAGAATCAACAGCAAATAAAAATACTACTCCAACAACTAATTTGCGCCACCAAAGAAATATTTCACAAACAAGTTCCCTCCCTGGATTTTCATACACCTCCCTATCCCTACCAGTGAATTCTCCAGGTAGCTCTAATTCAGAATCCAGCTCAGGCGGTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_681272_681783_6:0:0_2:0:0_11	147	chrVII	681584	255	200M	=	681272	-512	TTTACAAATGCAACCTTTATCAAGAACTTCAAGTTCAAGTGTTAATGTCACAGCGATGAGAAGTACATCTGCAGGTAATTCAATTACAGCGAACGCTCCCGTTGTACCTATGGTGATGGTCAATAACCAAAATGTTAAAACTGTTGCTGCCGATCAGTCTGCTAAAGCACCTTCTTCACCTACCATGAATTCGTCCGTCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_892310_892899_5:0:0_6:0:0_5	99	chrVII	892310	255	200M	=	892700	590	AGTGCCTTACAGAATTCTTGGCATGAGAACAACAAAATAGCTCCCCGGAAAGAAACACTAATGTGTCACCAAACAAACAAACGACGTTATATAATTGTTGTGATATTTGCATCTTCATCTTATGATGATGAGAATATAAATAATTTTTCATCGTATTAAGTGTATATATGAATAAGCTATTAACCCTACCCATTAATTTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_892310_892899_5:0:0_6:0:0_5	147	chrVII	892700	255	200M	=	892310	-590	CATTTTTCTTTTGGTTAAATTCAAAAAAAGCACTTTAGAGTTATCCACGGCATTATGGATTGGCATTATGTAGCCGTACCTGTAAAATTCGTTGTGCAAAACCATTGGGTAGAATGAAGCAGAAATATTTAATATGATCCACGTCATCAACCAAATACTCAGGTATGGACGGCAGTAAGCTATAACTAAGCTGAGATCGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_902032_902576_3:0:0_3:0:0_4	163	chrVII	902032	255	200M	=	902377	545	GATGATCCTCAGATGCAGATACCATAAAATCTGAATCTGGGACAAATCTGACACAAGTCACTTCAGCTTCGTGGCCTTACAAAGTTGCATAAACACCTTTATTATTTGGTTCAATGGGGTCCCATAATGCAATAGTTTTACCTGGGCCAAATTCGACGATTTTTTTAACTTTGTGTATATCGCTAACCTGAGTTTGCTTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_902032_902576_3:0:0_3:0:0_4	83	chrVII	902377	255	200M	=	902032	-545	CTAATATTAAAACAAAAAAATTTTTCATCTATTTCAATATCGGACACTTTTCCCGTCACGTGGAAACGGCTGACAAGGTTAATAAGAAGAAATCGCTTAAAGGACCGACCCAGGCTATAAATTATACTGATCTTTATACTCTATACGCTTATTTAATGGGTTGCATCTCTGTCTCACACATTTTGAAACTCTCAAATTCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_922150_922627_3:0:0_1:0:0_a	99	chrVII	922150	255	200M	=	922428	478	TGCGTGGATTAGTTTATCATAAGACTTTCAATGAACGTACCAAAGGCGAGACTCCTAAAAGTAGCAGAGTTATCTGCGAAGATATTTGATCAAAATTTCAACCCATCAGGTATAAGAACGGGTTCTAAGATTCTAAATGAGCGATTAAAGGGCCGTTCTGTGGCAAGCTACTACGGCAATCCGGATATCCTGCAGTTCAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_922150_922627_3:0:0_1:0:0_a	147	chrVII	922428	255	200M	=	922150	-478	GAAACGTCGTGGTAAAGGTGCTCCTAAGAAGATGAAGAAGGATGCAGCTGCAACTGCAAAGGGCAAGGGGAAGAAAAAAAAATGATTGGAGCACCCTTACTAAAAAAAATATTCATTATGTAGAAACTCATTTCATGTACATACAAAATCAAAAATAAAACAACAAATAGCTGAAGCAAGAAAACGCTACTTTACTTATA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_971124_971582_6:0:1_1:1:0_f	99	chrVII	971123	255	200M	=	971383	460	GACAGGGTCTTGTAGAAGATGGAACACCACCTTGTTGCACATGGCCTGGGATAGCAGTTCTAACACCCAACTTACCCTTGCATGCTTCCGATATGATGTCAGCCAACAATTGAGTGCTATATACGCTAGAAGCTTGTTCGTTTCTAACCAATAGCTTACCGTTTCTGTTTTCACCTTTGTCGTGACGAAAGTTCTCTTTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_971124_971582_6:0:1_1:1:0_f	147	chrVII	971383	255	200M	=	971123	-460	GAAACAGCACCAGTGATTAAACCAGTGAAAGAAGCGATGTAACCAGAGTGACCACCTTGGACTTCACAGACGAAGACTCTTCTTCTTGTCGCAGAAGCACTCTGTTTGATGACATCAGGGTAATTGACTAATGCGTTCAAACAGGTATCAACACCAAGTGAGTATTCAGTACCTGGAACGTTGTTAGAAACAGTGGCTGG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_1003618_1004194_4:0:0_3:0:0_7	99	chrVII	1003618	255	200M	=	1003995	577	GTGACATAGAGTCCGTCATAACTTTTCATCCTGTCATGCATCCAAGTTGCCCCAGCGTTATTCTCAAGAAAATGAATAGATCTAGGCGTAACACTGACAATCCTGTTCGTAAAATAATCTGGGGGTGAATTATAAAAGTCCGATAATTTATCTTTTAAGTCCACCATATGGACTAAAGTTGTCTTTAGATCTTTTAATTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_1003618_1004194_4:0:0_3:0:0_7	147	chrVII	1003995	255	200M	=	1003618	-577	ACTGAAAGACCAATTTGAGTTACTGAATGAAGAAAATTAGCCGCCACAATTATATTTATTCCTTTTTAATGTCGTATCACAATGCCAGAAGGGATATTTCTCAGAAACAGTTTAAGATCTGCGTGTTCCTTCTGCAAGAAGAAGCGAAAAAAAGAAAGGAGAAACAATAGCAGCATAAATCTTGTTCGATAAAACAACAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_1051445_1051916_1:0:0_3:0:0_2	99	chrVII	1051445	255	200M	=	1051717	472	ACCAAGAATTCGCTGGAAGACATCCAACCCTGCGCATTCACCATTATCAAACTCGTCTTTTTTGTCTTTACGTTTTAATTTAGCACCGAGCCCAACGTTGTCGTCCTTAATTGACACTTTGATATGCGAAGTGTTCGAATTCATGGGGGATAACCCGAGACCCATACCGGGTTTCCATCCAAACTTTTCTAGAAATTGGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_1051445_1051916_1:0:0_3:0:0_2	147	chrVII	1051717	255	200M	=	1051445	-472	TAGCTGCCAAACCCATTCTGCTTCTTTCTTTAATGGTGTAAGCTGCCTATATGTTACTATTGAGTACTCATCTCATCGCTTCGTTCAGAACAAAATTTTTCATATTTTTTTTTTTTCCTTTTCTTTTTTTTTTTTTCTTTGACTGTTACCCGGTTGTTTATATTTGTACGAAAACAACAACGACAGAGAAAATATCCTTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_1066297_1066809_8:0:0_8:1:0_0	99	chrVII	1066297	255	200M	=	1066610	513	GACGTTGAATTGAAGAATAAACTGAGCCACACAATCCCATCTTCTGCACACTTAGTTCCTTATTTAGAGACTTTTATGATAAAAATTTCTTCCGTTCACTGTTAAACAAGCTTGTGAACAATGCAGACTGTGCAGGAAAATGACCTATGTTTGAAGGATGTTGCCACATAATTGAGGGAAGTTAGGAGAGCATTCCCTAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVII_1066297_1066809_8:0:0_8:1:0_0	147	chrVII	1066610	255	200M	=	1066297	-513	CTATTTGATTAAATTGGGTCCCATTTTCACAAATATTTTGCCACCTCTCCTTCTCGCCAAGGAGTTGTACAAAATTAACAGACCTTTTAGAATATATATTAAATGTAGGGCAGCAGAATACGGCCACCATCTCATTCTTTACTAGTTAAAGCGGCAATTCCAATAATTATAAAAATATAAGTCAAGAAAGCATCTGTCTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_573344_573800_1:0:0_1:0:0_1	419	chrVII	1087422	255	200M	=	1087679	457	GCGGAAGACGTAGTGGCAGGTGAGGCGGCGAGTTCAGATCATCATCAAAAAATTTCCAGAGTAACGCGAAAAAGGCCCCGAGAGCCCAAGAGTACAAACGATATCCTCGTCGCAGGCCAGAAACTCTTTGGCAGCTCCTTTGAATTCAGGGACTTGCATCAGTTGCGCTTATGTCATGAAATATACATGGCAGACACACC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:6
+chrV_573344_573800_1:0:0_1:0:0_1	339	chrVII	1087679	255	200M	=	1087422	-457	CTTGATAGCACTGGCGTCTAAGGGCGACGTGAAATATGTGTCGTTTCTGTTTGTACCGTACACAGTGTTGCTTGCTAATTGCATGATCAGGTTGAGCCGATGCGGTTGATTGAATGTGGCCCCTGTAAGAAACTTTATTGAAGAAGGTTGCGATGGCGTTACTGATTTATACGTGGGGATCTACGATGATCTTGCTAGCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:6
+chrVIII_22151_22729_4:0:0_5:0:0_4	99	chrVIII	22151	255	200M	=	22530	579	AGTCATGAATTTGCATGGTACAGACGTGTACTTAACTATGAGAGATACGCTGAACAAACTAGTAAAGGAGTTGAGGATGCTGTTCCAAGCTTTATCTATTGAACACTCTTCTCAAGATAAGCAGTTCTTTTCTTTATTCCAGGAGAATAAAGACTCTGCCGTAGTGCCGTTGTAACAGTTCTGCGCACACATCAATGGCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_22151_22729_4:0:0_5:0:0_4	147	chrVIII	22530	255	200M	=	22151	-579	GTAAGATGGGAGATGAATGAACAAAATGAACTTTGTTTCATGTCGCAGACTACCACATTGAGTGCACAGGATGAATTGTTTAATAATTATGGTTATATTTCTAATGAAAAATGTTTGTTAAACTACGGGTTTTGGGATTCCTCGAATAAGTTTGACTTCTCTAGGTTGACGTTAAAGCTAACATCCACCTGAGTTAGCGG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_133554_134047_5:0:0_5:0:0_5	163	chrVIII	133554	255	200M	=	133848	494	ATTATGAATATTGAGTGAATGAATTAATGATTGTTGCGATTTCCTAGTTGGTGAAGGCTATGATATCAGCTATGCAGAATATACTAGTAGTTATCCACCAGAACATAAGAATCCTCAAAATGTAATTAAAAATCCACTATCGTCTATCAACCAATAATTATACTATCAATATATTATGATATACGGTTATAGATGATGAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_133554_134047_5:0:0_5:0:0_5	83	chrVIII	133848	255	200M	=	133554	-494	GAATAATCGTAATATTAGGTTGTAGAAATATAGATTCCATTTTGAGGATTCCTAAATCCTCGAGGAGAACTTATTGTATATTGTGTATACCTAATATAATAGCCTTTATCAAAAATGGAATCCCAACAATTATCTCAAAATTAACCTAATTCTCAGAATCTGTATTTCGACATAAGGTTATTAGGATTATTTCTCCTGCC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_272363_272823_5:0:0_6:0:0_2	99	chrVIII	272363	255	200M	=	272624	461	AATGCTAGAAATGAGGGAAGTGTGGACTTGATATGGCCTGTTGTGGACGCCTGAGAGTTCTTTCACGTGCTGTGTTCGGCCCGCCTATATAGGGACAAATTGTTAAAAAGATAAATAAATATAAACTGCCTCGGAAGGGGTTGGGAACGCCCGGCAGAAGCGATGAGGGTAACGGGACGATAATTAGAAGTGAATGCTGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_272363_272823_5:0:0_6:0:0_2	147	chrVIII	272624	255	200M	=	272363	-461	GCACAAGGGTAAGTTCATTCAGTGTTACCATGCCAGTAAAACGGATATTTGACACATTTCCGTTACAAACATATGCTGCGCAGACTGACAAGGACGAGGCCGTTGCATTAGAAATACAGCGGAGGTCCTACTCATTCACAGATCGCGGTGGTGGAAGCTCTGAGTTCACTGTGGAGGGGACGTAAAAGCTAGGTGTTTAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_311844_312317_4:0:0_2:2:0_8	99	chrVIII	311844	255	200M	=	312118	474	TATGTTTATGTCTAAATTACGCGCATATGAAGAGGCAAATCAAGCCTTTGCAACAGCTGATCAGATAGACTTGAACTTGGCTAAAGCATGGGCCCAATGGGGTTTCTTCAATGACCGTCGTTTGTCAGAAGAGCCAAAGAACATTAGTTTTGCTAGTAATGGAATAAGCTGTTATTTACAAGCCGCCGGCCTGTATAAGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_311844_312317_4:0:0_2:2:0_8	147	chrVIII	312118	255	200M	=	311844	-474	AACGCATTTGACTCCTTTAGAGGCGAAATACCCGTTTGGTACTGGATTACTTTCATTCGTCAACTAGTAACCTCTCTATCACATAAGGAGGCCAATATGGTTCGTCATATCTTAATCAGAATTGCTAAAAGTTATCCTCAAGCTCTTCACTTCCATATAAGAACGACAAAGGAAGATTTCGCCGTTATCCAACGACAGAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_342849_343228_3:0:0_3:0:0_1	163	chrVIII	342849	255	200M	=	343029	380	CATATCTGCTTGTTACATTTCTACGGGCGACTTAGAGAAGGTTATAGAGTTCACTACAAAGGCACTTGAGATAAAACCTGACCAATCTAAAGGCTTGCTGAGACGTGCATCTGCCAACGAGTCACTGGGCAACTTCACTGATGCTATGTTTGATCTATCTGTTTTGTCATTGAATGGTGCCTTTGATGGAGCCTCCATTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_342849_343228_3:0:0_3:0:0_1	83	chrVIII	343029	255	200M	=	342849	-380	CTTTGATGGAGCCTCCATTGATCCTATGCTGGAAAGAAATTTAAATAAGCAAGCAATGAAAGTACTAAATGAAAACCTATCGAAGGATGAAGGCAGAGGCTCGCAGGTTTTGCCGTCTAACACTTCTCTGGCGTCATTTTTTGGGATTTTTCACTCTCACTTAGAAGTTTCTAGTGTGAACACCAGTTCAAACTACGATA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_385961_386445_6:1:0_2:0:0_7	163	chrVIII	385961	255	200M	=	386246	485	CCGGTTATCGTTTGACTTCTAGTTCTGGTTTTGTTTCATCTACTGCACCTTTCTCTTCCCAACTTTCTTCATCTTCATCTTCTGAAACATCATCCACCTCATTTTCAACATCATCATCATCTGCCCCTCTTTCCTTAACTTCTTCTTCTTCTTCTTCTTCTTCTTTCGCCACTATTATTCCCTTGGCACCATCGCGCTCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_385961_386445_6:1:0_2:0:0_7	83	chrVIII	386246	255	200M	=	385961	-485	GAACTACCTCTACACTGGTACCCTCTTCTAGCGTAGATACAACGTCTAGAGCAACGACATCCATGCCATTAGAATCGTCTTCTACGCAATCGATATCCGTCTCCAGCTCGGATGGCACTTGTTACGTTTTTTATGATGATGATGACTACTATAGTACGGTCTACTTAACTAACCCGTCTCAATCCCTTGATGCCGCCACC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_455213_455717_8:0:0_5:0:0_3	99	chrVIII	455213	255	200M	=	455518	505	CTACAGGCGGCTATTATTGTCGACGTATTCTGTAAAAGCTTACCGCTAACTACAACTTTCGACTCTAATGCCTGCGTAACGCAGAACTTCCCAAAGGGAACGGACCTGGAATACTATGCAGAACTACAGGAACTACTGAATAGCATTCCACGTAGGGTCGGTCATATCGAAGCAGTTGTATGGGATGATAGACTGATCGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_455213_455717_8:0:0_5:0:0_3	147	chrVIII	455518	255	200M	=	455213	-505	ACATACTTAACGTAAAAAGGAATGTACTTGTATAGAAAAAACACATATTCTGCCGCTTAAGATTTAGTTTCCCTCAGGTATATACCTTATCGCTGTTAAAATAAGAAATCTTCACTTCTGCTATCTTTTTTTTTCTAACATTGATTAATAATCCGGCCGTCCGCAGATTGCTTACGCAGAATATACCGTACCGCCACCGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_456483_456967_3:0:0_7:0:0_6	163	chrVIII	456483	255	200M	=	456768	485	CCCTTCTTCAACAAAACAAACAAATAAAGCGAGAACAAAGGGAACCACGAATTAAGATAATTAAACAAACAATAGATAGGAAAAGGAGATCTACGAGTAAGCGTAAGAATGATGGATATCAGCCCTACCTGTTATGGGTACATCGACGACGAGCAAGATCTAGCCCTTGTTTTCCAGGGCGTATTCAATGGAAATTTGAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_456483_456967_3:0:0_7:0:0_6	83	chrVIII	456768	255	200M	=	456483	-485	GGCATAAAAAGATGGACAGATGGTTTTTCTTGGTCTCCTTCAAGAATTTCAGGCTAATTTCTCGTATATAGAGAGTATAATAGGCTCGGTTCCACGCACGATCTACCGCTGCATAATGTACCTGTCTTTAATATCTTCGAGAGGGCTCATAGGAAGTATTTTTATACTGGACTTCTGAAAAAAACATTTTCTCTAAAATT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_495976_496487_3:0:0_4:1:0_0	163	chrVIII	495976	255	200M	=	496288	512	AAAGAGAGTCTACATCTTCACATAAGAAAGTGAAATTCGTTGAAGAAACAACCGTGGATAATGGCGAAGAATTGATTGTCCAAAAAGCTGTAAGCCAAACTAAGGAAGAAGAGAAGCCAATGGAGGACAGTGAAGATGAAGAACAGGAGGAGTTTGACATTCCCGCTATCGAATTAAGTGATGACGAAGAGGAGGAGGAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrVIII_495976_496487_3:0:0_4:1:0_0	83	chrVIII	496288	255	200M	=	495976	-512	GTATGAACAAGACTTAATTCTAAAAGTTTAGAGGAGTGTGTTCAATTTGTCGATAGCTGTTTTTTTGGCTGGTGGAGAAGGAGATTTTTCGCCACATAAATATTGGCTAAATAAGAATTTTCCGACGAGCTGATTATTAACTACTCCCATGACCTCAAATTCGTTGTTTTGACTGTCATGATATGAAAATTGTAAAGCGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_20624_21148_5:0:0_6:0:0_6	163	chrX	20624	255	200M	=	20949	525	CATTGAGAGGTTTGGACTCCGTACGTGTCTATTGTGGGGTGCTGCTTCTATGCTATGCTGCTTTGCTGTGTTTGCCTCCGTCGGTGTGACAAAGAAGTGGCCTCAAGGCAGCAGTCACCAAGACATTACTTCTCAGGGCGCCGGTAACTGTATGCTTGTGTTTACTATGTTCTTCATTTTTTCGTTCGCCACCACTTGGG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_20624_21148_5:0:0_6:0:0_6	83	chrX	20949	255	200M	=	20624	-525	ACCGGGGCAATCAACTTTTACTACGGTTATGTATTCTTAGGCTGTCTGGTTTTTGCATACTTTTATGTCTTTTTCTGTGTACCAGAAACAAAAGGCCGGACGCTGGAGGAGGTGAATACTATGTGGCGGGAAGGTGTGCCAGCATGGAAATAAGCCTCATGGGTGCCACCAGAAAGAAGATCCGCAGATTACGATGCTGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_32511_32973_6:0:0_10:0:0_7	99	chrX	32511	255	200M	=	32774	463	GGTGGAGGTGTGGCGTCTCCAACTGAGAAAATATCAAACAAACAATTTTGCGACGACGAAATAAAAGCACTTGTAGATGTCGCAAATAGTTAGCACACATACGTAACAGCACACGCCTACACTGCGGAAGCTATACAAAATTGTATCAAGTTAGGTGTTAATGGTAACGAACACGGAAACTTATTAGATGAACGTACCGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_32511_32973_6:0:0_10:0:0_7	147	chrX	32774	255	200M	=	32511	-463	TTCTGATCAATTTAGTGCTTGCTTGGGACCTGAAAATAGTAGAAAAAATACAGAGGTGCTTTACAAAGGAATTGATGCAATGAAAATTGCCCACAAAATAAAAGTTAAAATGTGTTTTGGTTCAGATGTAGTGGGTCCTATATATGGTTATCAATCGCAAGAGTTTCGTATTAGAGGGAAAGTTCAAACGACACATGAGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_75095_75508_2:0:0_2:0:0_2	99	chrX	75095	255	200M	=	75309	414	CAATCTACCGTTCAATTGAACAACAATCTTACCAGATCTGTGGTCATCGATGTATTCAAATTCACCAATGTAACCGTGCTTTTGCATAACTTGCAAAAACTTTATAATGACCTTGGAGGATGGTCTGATTAAAACTTGACGCTAACCGGTCTTTTCAGCGTTGTTAATGGCATTCAAAGCATCAGCTAAAACGGAAGATC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_75095_75508_2:0:0_2:0:0_2	147	chrX	75309	255	200M	=	75095	-414	ATGTATGTTGGTCTTGTTTTATAAAAAATACTAGAACTGAAAGGCCATTAAAAAACCTTACAATTTAAGAATTGAATAGTCGATTAAGATTATTTAGATTGAAATTGTCTAACTGCAAACCCATATTCAAGAATTATTTCACATCTTCCAGCGAGTAAACATGCCGCTGGTAATCGCGCGTCCTAAATATTTGAGTTTTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_131958_132464_9:0:0_5:0:0_0	163	chrX	131958	255	200M	=	132265	507	GAATGGCACATTGTAAATTCAGTTTCAGAAACAGATCTGTGCCTGAGATGTTGCAAGAATTAAAGCTATCATTGATACACCGAGAAACAAATTTAAACATTTGCTTTAAAAGATTGGAATAATGGGAAAGTAACGTCATGTTATCGGGTCTTTTTTTCAAAATGTACTCTTGTATCATACTGCAATTCCTCATCAGTTTC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_131958_132464_9:0:0_5:0:0_0	83	chrX	132265	255	200M	=	131958	-507	TTGAATTTTGTTTTTCATTGTTTGTTTACGAGATGTAGTGTTCATTATCCAATGAATCAAATGTGCCAACTTTTCCTGTATTGGGTCCAGTATCCAGGATTCTTCTTCATCATGTCGATTAAAAAACACTTCGTCTACATTTGTATCCGAGGATGCAACATTGGCGCGCGGGCCGCTTCTTGATATTATTAAGGGCTCAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_185042_185518_4:0:0_1:0:0_b	163	chrX	185042	255	200M	=	185319	477	CGATCAATGGGGGCTGAAATCTTATGTTTTCCCAGTGCGTTCACTATTAAAACAGGGGAAGCACATTGGTAGTTACTAGGCAGCGCACGCGCGGTTGACACTCAATGCTATGTGCTCATGCCAGGGCAGGTTGGAATGCACGATCTCAGTGATCCAGAGTGGGAGAAACAATCACATATGAGCGCTCTCGAAAAAAGCTC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_185042_185518_4:0:0_1:0:0_b	83	chrX	185319	255	200M	=	185042	-477	TTGGACCACAACTAATTCTCGCTGATTTGGATCGTGAGCGTTTGCAAGAAATAAGGAACAAAATGCCCTTATGGAACCAGAGAAGAGACGATTTATTTCATTGAGGCAAATAAAATATGAAAAAAGCCTTTATTCGTACAGATTTGCTTTACATATTAAAAATTTCAAAAACATATAATTTAAGTATATAAGTAGTTAAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_204570_205015_2:0:0_10:0:0_3	99	chrX	204570	255	200M	=	204816	446	GCACAAGCGATAGAGGAGATGTTTAAAGTGTTTAAGCTCACTTTATAGGGTGAAACACATTTTGACGACCGTAAAAGGTCATTTGATTTGGTATTGAGGTCGAGAAAATATTTTCAACTAGTGAAGGATACATTAAACACGCTCACAAAACAACATAAAAATCCGTGATAGTTTAATGGTCAGAATGGGCGCTTGTCGCG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_204570_205015_2:0:0_10:0:0_3	147	chrX	204816	255	200M	=	204570	-446	CTTGATGACTGTTCTCGTACTATTTCCACCTTGTAGGAGGGTATAAGATACCGATGATATATATTCAGTCTAGTTCTACGACACAGAAAAACAATCGACCAAGCCGTCCTTGAACAGGCTGCAGTACGTCCGTTTTTTTATTTTTTTTGGCTCATCTACGTAATCCTATTATCTTTTATTAAATTTTGAAGCTATGAGTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_358634_359139_4:0:0_4:0:0_9	163	chrX	358634	255	200M	=	358940	506	TTCACCTTGGCTCACTAGTTCGTGAAGCTCATCGTAAATGGATAACCAAAGGGTGATGATAGTGCATGCAATGAAAATATCCAAGGGATAATTGCACGTCAGGACGTGGTCCCAAACGATTAGCACATATTTTAAGGGTAATTCTCTTAAAAATAACAACCATGTCCATCGGATGAGCCAGATTAGGTTGGAGTGAATCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_358634_359139_4:0:0_4:0:0_9	83	chrX	358940	255	200M	=	358634	-506	CTTATCCCAGTTAATCAAATTTTCTTCGTTATAAAAAATCGGTTCGATTTGGTTCATTAGCTTGTTAAAGATAATCACAACGTTTTGCTAATCGGTATTATCGAGATATGTACCGTGATATAATTGCAGATAAATGACGCTTAATAGTTCGTGGAACCCTTGTTTATACTGTAGGTGTTCGCTTTGATGTATAAGCAGGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_382849_383384_3:0:0_5:0:0_1	99	chrX	382849	255	200M	=	383185	536	GCACCAAGAGGTGTACCTCAAATTGAAGTCACATTTGCACTTGACGCTAATGGTATTCTGAAGGTGTCTGCCACAGATAAGGGAACTGGTAAATCCGAATCTATCACCATCACTAACGATAAAGGTAGATTAACCCAAGAAGAGATTGATAGCATGGTTGAATAGGCTGAAAAATTCGCTTCTGAAGACGGTTCTATCAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_382849_383384_3:0:0_5:0:0_1	147	chrX	383185	255	200M	=	382849	-536	TGGTTAGATGATAACTTTGAAACCGCCATTGCTGAAGACTTTGATGAAAAGTTCGAATCTTTGTCCAAGGTCGCTTATCAAATTACTTCTAAGTTGTACGGAGGTGATGATGGTTCTGGTGCCGCTGATTATGACGACGAAGATGAAGATGACGATGGTGATTATTGCGAACACGACGTATTGTAGATAAAATAGTGAAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_438844_439314_5:1:0_2:0:0_8	99	chrX	438844	255	200M	=	439115	471	AGGAAAGTCGTATAATGTCAGAACTCTTTGGAGTATTGAAATGTAATGCTGGCAGAATTATTTTGAAGGACCCCTCCGCCACTTCTAAAGATGTTAAAGGATATATAGCTTCAGTTATCAATACCTGTAAGAAAGGGAGTATTACAAAGAAAGCAGAAGTGGCCGAAATCACTGTTGATGGTTTAGACGCCAATCAAGTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_438844_439314_5:1:0_2:0:0_8	147	chrX	439115	255	200M	=	438844	-471	TGTGCTCACGCCTTCTCACAATCTCTCTGATGGTAGCACCCTGAACTCATCATCCGGGGAAGAAAGTGAACTAGAGGAGGCAGAAAGTGTTTTTAAAGAAAAGCAGATGCTCTCTGCTGATGTTTCTGAGATTGAGGAGCAGAGTAATGATAGTCTTTCCGAGAACGATGAAGAACCTAGTATGGATGACGAAAAAACCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_582991_583504_1:0:0_3:0:0_a	163	chrX	582991	255	200M	=	583305	514	GTTGCTATTAACATTATTATTGGGCTTACTCAAAAAATCGTTTATACTCTTTTTTCCCTTGAGCATATTTGGTGAATTATTTACGTCCACAAATGTCTGTTGAATTCTTTTGGTAAAAGTAGAGAGGTATTCACTTGGGTTCTGGTTACCTAATTTCTGTTGTCCATTTCGGGGCAGTGTATCTTTGAACTGTAACTCTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_582991_583504_1:0:0_3:0:0_a	83	chrX	583305	255	200M	=	582991	-514	GGTCGCTCACGGGTGACTGATTTGTCGTAGAGCTGTGCGGACTTGATATAGGTATAGCAAGTCTTTTGGGCTTTAAAGGTGTCGTAACCATTGGTGATTTTGATTCAGGCTGCACTTCATGTTGTTTTTGATGCGGCTGTTGCTGCTGTCCTTGGGAGTGTTTATCGACAATCGACAGCTTATGTAATTCAATTGGTTGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_610495_611012_5:0:0_2:0:0_5	163	chrX	610495	255	200M	=	610813	518	AAGGATAAGTCCATCTCATTGGAAAAACAGTCCGGTATGAAGAAAAACATAAGCATTGGTGCTCAACTACTGAAAGAAGAAGGTTTTAGAGCTTTGTACAAGGGTATTACGCGAAGAGTGATGAGGGTGGCTCCAGGTCAGTCTGTCACCTTTACCGTTTATGAATATGTAAGGGAGCATTTAGAAAATTTGGGTATATT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_610495_611012_5:0:0_2:0:0_5	83	chrX	610813	255	200M	=	610495	-518	TCTTCCTTATTACCTACACAAAATAAAGCAGCAACATAAGAAACAAAAACAAAATGAAAACATACCAAATAAATCTATGTAAGCATACTCATTTCAATTTGATATTCATTACTTGACTTTTTTGTCCTTATTTGAGGATCCATAAGCGCGCCATTTTTCCCTACTCCCTTTTTTCGTAAATAGTAATAATGTGCTGAAAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_743509_743937_3:0:0_2:0:0_4	163	chrX	743509	255	200M	=	743738	429	TCGAGAAGGGTTGTTCTGAACGCTTCTTGGCAGCCCATGGCATTGAAGAAAAAGTACCTAGTATTCCAAGCCTTATTTTCATCTAAGTACGAATTTAGATTTGCTGCCACAACTTCCCAATCATGAGGATCAGAACATGGTGTGTTTTCAGTAACCTCTTTGCAAAACTGAATGAGTTGTTTCGATAAGGAACGCTTACG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrX_743509_743937_3:0:0_2:0:0_4	83	chrX	743738	255	200M	=	743509	-429	TTGGTCCCAGAAACAGGACCAGAAGTGAAACTATAAGTGGGTAAATACAATTGTTGGAAAGTTTCCACCAGACGCTAAGTGGTAGCCATAATAGCATCAAGTTCGGAAACGCTAAGGACTTGTAAATTTCATAACAAAACCAGGTAAAGCTGCTTCTGAAAAGATCTTGAGGTAGAACAATCTTTTGGGATTCGAGCTGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_27284_27774_3:1:0_7:0:0_3	99	chrXI	27284	255	200M	=	27575	491	AAAGCCTTTGATCAGCTTATCGGTTTTGTTACCAGAATTTCCTCCAGTTCCAAATGTAAAGTTGTTACAGTCACCTTGAGAATCTGCCATGACGTTAAATGTTTTTAAGATTACATCTGTCACTCTTTGGGAAGTTAATACATTGCCTCCGACAACAGCAGCACCGGATCGGGGGCTCAAGAGTGAAGCAGCAGGTATTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_27284_27774_3:1:0_7:0:0_3	147	chrXI	27575	255	200M	=	27284	-491	AGCATCTGGTGCATTTAAATTACCATAAACTTGGGGTGAAGTGCCATCGAAATTAAAAATATACTCCTCTTTTTCAGGTCTTATGATAACTTGTAGTTTAATTAAGCTTCAATCATCTTAGCGATCTTCGCAAGAAAACTTCGTTGTCCCAAAATGTTCAACCATTTTTGCAAGCATTTTTTTTAGGGATTCAGATGCAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_226703_227185_4:0:0_7:0:0_4	163	chrXI	226703	255	200M	=	226986	483	GTGAATGGGAACAATGACGATGATGCTGATGCCAACAACATTTTTAAACAGCAAGGTGTTACTATCAAGAACGACACTGAAGATGATTCGATAAATAAGGCCTCTAATGACCGGGGATTGGAGGACGAGAGCGGTCCTACTCATGGTAATGACAGCGGTAACCACCGTCACAACGAGGAGTATGACGTCCATAGCCAAAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_226703_227185_4:0:0_7:0:0_4	83	chrXI	226986	255	200M	=	226703	-483	CAAACAATAAGCACGATGGAAAAGACGATGATGCCACTAACAACAATGATGGCCAAGATAATAATAATTATAACGATCACAACAATAACAGCATTATCAATAACAACATTGTCGGTAGCCACGGCATTTCCTCCCACTCACCATCCTCCATACGAGACACGTCTATGAATTTAGACCTCTTCATTTCTGCGACCGATGAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_302795_303272_10:0:0_6:0:0_7	163	chrXI	302795	255	200M	=	303073	478	TACTGATAGTCTATCTTAATCATTATTTCTTGTTTCAATCTGGAATTTGATTTTCGCGGCATATCGTTACCTCCTTATGCATATTATAAATGGGTTATATACGTATACAGCAACTTTCATAAATTATAGATATGTAATTGCCTCCACATCGAATCACCTAGGATAAAGAACCGACTTCCTGCCGCGAATTTAGAGTTTTC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_302795_303272_10:0:0_6:0:0_7	83	chrXI	303073	255	200M	=	302795	-478	TATCGCAAGAATACTGGAAACATCAACGTATGCTATAATAATGCGCATTTACTTTGGGCAAAAGAACGATTTAAAAGTACGCATTACGTAGTTTATTTTGACATTATGATCATAAACATGCGCAAATCCTAAGATCGTGAATTACCTCTACTGCGAGAATACAAATTATAACATATGACTAACGTTACACAACAGTGGAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_314675_315205_3:0:0_6:1:0_0	99	chrXI	314675	255	200M	=	315006	531	ATTTTGGCCACGGTCTGGGAGGGAAAAGATGTGGTTAGACAAGGAAGAACTATTCTTGGTGCTACTAATCCTTTTGGCAGTGCACCAGGTACCATTAGAGGTTATTTCGGTATTGCCCTAGGCAGAAACGTCTGTCACGGCAGTGATTCTGTTGATAGCGCTGAACGTGAAATCAATTTGTGGTTTAAGAAGGAAGAGTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_314675_315205_3:0:0_6:1:0_0	147	chrXI	315006	255	200M	=	314675	-531	ATAAGGAATTTTTTAGAAGGAGCACCATTATATAAAAAAAATACCACTTATGTTGCTCCCCTTATATACGAATTTATAATACTTAATGACGCTTCAATGACGCCTGAGGTCAAATGCTTTTGGCTCCCAGTGATATTGACACAATTCCTTCTTCTTTCCGAACTTTATAGTATCATCGAAAAATACAAGTTGGCAAAGGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_360709_361124_4:0:0_3:0:0_1	163	chrXI	360709	255	200M	=	360925	416	CATGGCTTGTCTTTTTACTCGATTCCAACTTTTTTTCAAGCTTATCAAATTCCTTTAATGCTATTTCTTGCTCAGGATCCATGATCTGAATCACTTCTTTCACTTCATCCACATAGTGCTTCAACATGGACTCAATACCGTACTTCAAAGTCACTTCACAAGAAGAGGATGAGGTACATGCACCTTGAAATCTTAAATAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_360709_361124_4:0:0_3:0:0_1	83	chrXI	360925	255	200M	=	360709	-416	GATCCCACCCACGGTAATCGATATCACCGCCGTCCTCCAAGATGGCTGGGCTTATTCTTGTATCTATCAGCTCTTCAATCAATTCGCTGACCTCTTCATATTCTTCGGTAAGTTCAAATTTGGGCATATTTATTTTGTAGCCACCTTCTCCTTCTTCTTCTTGGACACCATGGAATTCTTTGGATATAACATCTTCACCG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_389403_389898_4:0:0_6:0:0_8	163	chrXI	389403	255	200M	=	389699	496	ATTGAGGTGTGAACTCACAATGAGATGCTACATTGACTATCAAAACCACTTTGTTACGCAGGGAGTTGCAGGGGAATGGATTTCCGTTTTCATCTATTGGTGAAAAAGAATAAAATTCTTGCATCGTTAGTTATAAATATTGTGTTTCTCCGCTTATATTCCTTATACGGGTTCACAATCAGAGAACCTCGCCGTGCACC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_389403_389898_4:0:0_6:0:0_8	83	chrXI	389699	255	200M	=	389403	-496	CCCGGCTTTAAGTTCTCGTAGATGTGGCGAACAAGGCAGGAATCGCTTACCCTATAGAATTTGGGAACAGAAGGGGAAAGCAAATACGGAAAATTTTCCACATGAAGACGGTACTGGGGTATGTCAAGGGGATACTAATGTATAATTAATAGATATGTGTGTATCTACATTATTTGGTGTTGTTTTATTGGGTGATGGAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_436806_437329_3:0:0_2:0:0_6	163	chrXI	436806	255	200M	=	437130	524	CGATGAGGCTCTATCCAGCTGCTTATCTAAATCAACTTTAACGATGGATGATCTTATGACAGGGGGATCTTTCTTTAAAGTTCTTAGAATTACAGACTGTACCGCAGCTGATGAATCAAACAGCATTAAAAAGTGATATGCTCGAAAATGTTTTTCCTGGTCTTTCTTCATTATTTAAGGAAGATACCTTATGCCCATGG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_436806_437329_3:0:0_2:0:0_6	83	chrXI	437130	255	200M	=	436806	-524	AAGCATCTTAGTGAAAAGGGTGGTTTTGCGTTATTCTTTCCTCTGTTGAAGCTTTTCTATTTTGTTTAAGCTGAACTAGTGGGAGTTTCCATTAAAAGGCTAAAGTCTTGTTGAAACTTTTCCGGGTTAGATGATAACGGCGAAAAGATAGAGAAAATCAGCATTAAAGGGACTTCGTCTCCTCCTAATCAGAAATCATC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_445827_446391_1:0:0_7:0:0_9	99	chrXI	445827	255	200M	=	446192	565	GACTGTAAAGGATTATGATGGCAATGCGTATTACGAAATATCTGGTAAATGGAATGACGTTATGTATTTAAAGGCCTTAAAGCAACCTCGTTCTTCACCAAAAGTTTTCCTTGATACTCATAAAGAGTCACCATTGAGACCAAAAGTTCGGCCATTGAGCGAGCAAGGTGAATATGAATCCAGAAAACTGTGGAAAAAGG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_445827_446391_1:0:0_7:0:0_9	147	chrXI	446192	255	200M	=	445827	-565	TTTTTAATAAGTTCCCTGTCGACGAGGACCCTGAGAAGCAAATACGAAGCATATTGCAAATAGCACCTATTTTACCTGGTCAACAATTTACCGACAAATTTTTCATACCCGCATTTGAGAAAATAAAATCAAAAAAGAAGATGATTGAAAACGATAAGCAGAACCCAGCAAAACAATAGTGTATATGTTGGATATGATAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_470772_471261_1:0:0_4:0:0_5	99	chrXI	470772	255	200M	=	471062	490	TAATCCTTCAAATGCCACGGATTTCGATTCTGTTTATGCAAGAGTCGGCGATAACTTGAGGGTATCCAACCTCAACGATGCTGTAGAAGAGGATGTCTCCCTAAAGGGTTGGCCTCATAAAGTTTGCGAAAGCTGGATCGAAGATGCTAGAAGAAAATTAGAAGTCCAGCGCCTGGTAGAGATTCTTGACTGTGAAATAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_470772_471261_1:0:0_4:0:0_5	147	chrXI	471062	255	200M	=	470772	-490	AACTTAATACCTAAAATGTAAGTTAGCTGTTACTCGTCATTTCCGATTCAAAGAATTGTGAAATCTTTTTAAAACAATATAACTTTGTAGGAATTGGATCAACAATGTGTATATAAATAGTATTTAAACGACAAATACAGGTTCAAATAAATAAAAAAATACGAAAATATACAAAAATGCAACAACGTTTAAACTCCAAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_609225_609808_8:1:0_2:0:0_2	99	chrXI	609225	255	200M	=	609609	584	CTATGAATCAAACCGATAACAGAGGTGTGCTCGACGCAAAACTCGGAAAAGAACAGGAAAAAGAGGAAAGTTCAATCGAATATGAAAGTGAAGGACAGCAGGAGGATGAGAATGAAATTGAAAGCCTAAATTTAGAACCAGATCCTAAACTACAGATGAATCTTTAAAATGACCCACATCAAGATGATTTTCCAGAAGCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_609225_609808_8:1:0_2:0:0_2	147	chrXI	609609	255	200M	=	609225	-584	AAGATTTAAGTCTTGATGGGTTAAATGAGAAACGTCTTTCAATAACTTCTTCAGAAAACGTGGAAACACCATACACTGCTACGAACCGCCAAGTCGAACAATTGATTGCTCAATTAGACGATGTTTCCCTATCTAGAAATGCAAAGCTCGATATGAACGGCAATTGCCTCAACGCAGTGGACAGAAAGGCTTCTACATTC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_628737_629238_4:0:0_5:1:0_a	163	chrXI	628737	255	200M	=	629039	502	CATCGAACTCTATTATTGGAGATTTATGCGATGACTACGATAAATTAAGCCTTTCTGAACTATTAGAATTATTCAATGAAGGCGAAGAATTACCAGAAATTTTGGGCTGTTGGGGAACATTGTGGTTTGCCACAATTTGCGAAAAGAATACGCATTCGATTAGTAGTGAAGATAAATTTCAAGAAATCGGTATACAAGAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXI_628737_629238_4:0:0_5:1:0_a	83	chrXI	629039	255	200M	=	628737	-502	AGAGAGCTGTCAAGAAGTTTTCCAATAGCCGTAATAATCAGAACCGTTCCGTTGATATATCGTTCATCATTTCAAAATACTAATATATTGGGAAGTTTAGTCTTCAAACTCGAACCCTTCGGCAATATACACAACAATATACCAGTATTAGGTGCCCTGGAAAGTATTATTGACATATCTGAGGCAAGAAGTGAAAAAAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_573344_573800_1:0:0_1:0:0_1	355	chrXII	3308	255	200M	=	3565	457	TGCTAGCAAGATCATCGTAGATCCCCACGTATAAATCAGTAACGCCATCGCAACCTTCTTCAATAAAGTTTCTTACAGGGGCCACATTCAATCAACCGCATCGGCTCAACCTGATCATGCAATTAGCAAGCAACACTGTGTACGGTACAAACAGAAACGACACATATTTCACGTCGCCCTTAGACGCCAGTGCTATCAAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:6
+chrV_573344_573800_1:0:0_1:0:0_1	403	chrXII	3565	255	200M	=	3308	-457	GGTGTGTCTGCCATGTATATTTCATGACATAAGCGCAACTGATGCAAGTCCCTGAATTCAAAGGAGCTGCCAAAGAGTTTCTGGCCTGCGACGAGGATATCGTTTGTACTCTTGGGCTCTCGGGGCCTTTTTCGCGTTACTCTGGAAATTTTTTGATGATGATCTGAACTCGCCGCCTCACCTGCCACTACGTCTTCCGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:6
+chrXII_1065644_1066121_6:0:0_4:0:0_5	323	chrXII	4641	255	200M	=	1065644	1061004	TTTGATTAGGCCAGACTTTTCGTCTTCGTAGAATGACCGCACTTGCGTGGGGATCGATTCAAATAAAGTTATTGAGGGACAATGTACGAAGTCGTTTTTGTTATTTAGCGCCGACTCAAACTCGTCAAAGTTTGCTTTTTCAAACTTACGCCTATCGGAAACTTTCAATTTATTTTTGTAAGTTTCGAAATTAACAATAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:2
+chrXII_14440_14929_3:0:0_4:0:0_0	163	chrXII	14440	255	200M	=	14730	490	CGATGTAACGCATCTCATCTCTTTTAAACATAAAAGTCATTTGTGTAATGTAGAGATTTACAAAGATTTTAAAAAAATAACAAAACTATCCAAAACTATCTATATTTGAATACTTCCTCCTATTTTTTTTTTTTTAACTATAATGAATGAATGCATGCCATATTGACTTACGTAACAAGGTGGCCTATTGGTAATATATT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_14440_14929_3:0:0_4:0:0_0	83	chrXII	14730	255	200M	=	14440	-490	ACCACCATTTCACCTCTGGAGGATCTAGGCATAAAATATATTAGGCTCTCAAGGGAAATGAAGCGCGGACGTCGTACACTCTTGGGCTTCCCAAGCCCTAGATTGAATTCAACGTCATAAAGGCTGACTTTTGCCCACGAACTGACCATAATTCCAGATAAAGTATCAATTGGTTGAGGTATAGAAACCTTAGTCTTGTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_79515_79982_3:0:0_9:0:0_e	163	chrXII	79515	255	200M	=	79783	468	ATGATCATGGAAGTAATGCATAACACCGTTATCGACATTATCTAAGTCCCACACATTGAGTGATTCTAGTGGGAAACTATCGTTGGAAAGGAACGGATGGAACAGAGCCATCCATGTATCATCTCCGGCAAATTTGACAGTCTTATTTGCCCAATGGAGCTGTTTAAGAAAGTTATCCTCTTCGATTACTGTTCCATCGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_79515_79982_3:0:0_9:0:0_e	83	chrXII	79783	255	200M	=	79515	-468	GTGGTTGGTGGGTCGGCAATGATCTTCTACAATAGGGAAGATGCATCCTTATCGCTTGCAAAAGAATCATTCAATGATAATATATTATTATGTTTGTTAAAGTTGTAATTAGAGTGGCATTCGTTTACAGGAATAGCGAAATCAAATCTCAATGCGTCAATAACCTAAATCACCGCCTTGTTGAACCTAGGAGGTAACTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_179129_179604_4:0:0_3:0:0_c	99	chrXII	179129	255	200M	=	179405	476	ATTCAAATCACTTCCTTTGACGGTGGATAAGAGCTTCCAAAGAGAAAACAGTATATTGAGCGAGATTAATAGGTGGAACAAGTAGTCAAGACGTTCTGCATTCACCCAACTGACCGTGGTGTGATATATGATGTTAGCCTTCTTTAACGTGTGAAATGTCAACATGTACAGATGGATTCTGGATAGCCGGTTGCAAAACT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_179129_179604_4:0:0_3:0:0_c	147	chrXII	179405	255	200M	=	179129	-476	GTTTGTCATAATTCTCTGCGTCTCCATTTCCTTGTTTACCGTTCGCCGTGATAGCTCCTTGAGCACAGGACTTTCAAAGTTGCACAATTTAAACATTGCTGTGTCATTTTGTGATTGTGATGAGGGTTTGCTGTCTGTGTCCGGCAATGGGCCCGGCACGTCATTATCGTCCAGGCCCAATTGGCCCGCCTGAATCTTCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_219746_220211_0:0:0_2:0:0_f	419	chrXII	219746	255	200M	=	220012	466	TATATTCGCCAGATAGACCTCTCATAATTAATTGGCATGCGACCTTGTTATTGATATGAATGCCATTATTGTTCAGTCTGTCGATAATGTTTGTGACTTTTGTTTCAAATGCATCTGCAGGTGTACTGCCATTATATTGCAAATTTGCCAGGGTCACAATGTCGTTTGCCTCTTGGGTATCAGATTGCATTTTTTCAATA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:3
+chrXII_219746_220211_0:0:0_2:0:0_f	339	chrXII	220012	255	200M	=	219746	-466	AGGAATTGAGAGGGAGCAAATATTTGAAAAGTGTTATACAAGAAGGTGAGTTCATCATCAGTGATCTGACGTACGGGTTTTCCGTTTACTGTCGGAATAATACCACCGAGATGCGAGTTTTGTAAAAATTTGTTGTATGTTTTAACCCAATTTGGAAAATCATTAGGTGAGGTTAACATTGGTGGTGGTCTGACATATTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:3
+chrXII_224837_225269_7:1:0_1:0:1_7	99	chrXII	224837	255	200M	=	225070	433	TACTAAGCAAAAATGAATTCTAGTAATTAATAATAATGATATAAAAAAGGCTAAGTGCACAATACTAAAAACGAAACTAAGATCCTTAGAGTGATTTGATATCACCTGCGAAAATACCTTTTTGTCTTTGATCATCCGATTTTACGATCCAGTCTAGGGGACATAAGGCGTTATAGGTCTTCCAAAAGACCTTGCACGGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_224837_225269_7:1:0_1:0:1_7	147	chrXII	225070	255	200M	=	224837	-433	GATAATCCACATAAGATTGCAAACAATGCTTTGTTTGGTTTTGTTGGGGAAATCTAGCATCGAAACCAACTGTATGTAGTGGAGAGTTTTCTTGATCAGCCATGTCTATTATACTGTATTTATGTGCTTGTTCCTATTTGTGAAAGCAAAGATACTTTATGGTATTCTTACTAAAATATTTGTATATCTCTGCTAATCAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_329567_330050_4:0:0_5:0:0_3	99	chrXII	329567	255	200M	=	329851	484	GACATGAAGCGACAGAAGCCCTACGGATGTGCGGCTGGAAAAGAAAGTTTCATGAAGAACCAGTTGATATATATTTTACTATATACTTTTGCTGTGTATTTCTATATGAGGCTAGTTGGTTGGTGGGAACTGGAAGTGAAAGTACTGATCTTTAGGGTGCAGCTGTTGGTGTTGCTGTTGCTGTTGCTGTTGCTGCTGTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_329567_330050_4:0:0_5:0:0_3	147	chrXII	329851	255	200M	=	329567	-484	TGGGGTGAGCGGCTTTTACATTAGGTGCTGGAGTGATGGCTGGATTTGTTTTTTCGTAAGCGGCGATAATAGGCGTTGTGCTACTTGACATGTTTGCAAATGCATTTTTAAACACTGGAGGTGAGACAGACTCGGTTAGTTCCCTTTTCTTTGCAAGCTCTTCGAGCCTTTTCTTTTCGTCCTTCATTTTTTTTCTTCTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_343172_343673_10:0:0_4:1:0_9	99	chrXII	343172	255	200M	=	343474	502	ATCATTATTTAATATGTCATCCAACCGTCTCATATTAGGTTACGAATTTGTTACACATTCTGGCCTTGCTAACCTCTCCAGGTCATCTTTGTTGCATCCAGGTACACTCTCTACCAACATTTAACCATTGCCCTCCGGATTCGCACTGTCATATTTATTAGCCTCTTCGCCGCACATGATGTCAATATCGGGTCGATAGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_343172_343673_10:0:0_4:1:0_9	147	chrXII	343474	255	200M	=	343172	-502	GCTCACAAAACGCTGAATAATCGTATTGCTTTTCTTCCTCGATGTGGCTCAATGTATTCAGATAGTCGACTTCGTCTACGTCCATATGTATCCCATAGAGATCATCTGCTGTCCTCTCCTCTAGTACTTCGCCTGTTAGGGGCATCGAATCATCATTTATTACCCTTGTCGACCTTTTCCGTAGCGGTGTGGTAAAATTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_349489_350011_4:0:0_4:0:0_6	99	chrXII	349489	255	200M	=	349812	523	TTTGACGGAATTTGACAATAGATAACCCTCCAGCCACTAGCTGAGTTAACGTCTTGGAGACCAAGCATAAACTATCAAAAGCGAGTTTAACGCATTTAGATTCGCTCATAGACTTAGAATCATCAAGCGCAATCATTATTTGATACTGACGTTTGCTTGGTTTAGTTCTTCTCAACCAGATTTTATCTATACGGAATTGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_349489_350011_4:0:0_4:0:0_6	147	chrXII	349812	255	200M	=	349489	-523	AATTCGGCGGTCGAAATGTCACTTTGATGCCACAATTCACGCGATTCTTCTAACGATCTTTCCGGTGTCAAACTAGCACTTGCATCAGGTGGATTATCCTCAATGTTTTCAATTAAAGATTGTATTTCACTGTCATCCTCTTGATCAGCCGAGAAGTGTTCATTTGAAAGTTCGTTCTCAAAATCTTCCTCACTCTTTCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_394208_394614_2:0:0_5:0:0_b	99	chrXII	394208	255	200M	=	394415	407	GTTGACATTTATTGATGTATCTATTTCTTTGAGGGTTAATTAAAGATAACAAATTGCTTTCTTCCGCTAATTTGAGCCTATTGAATTTACTGGGAAATGCCAACGTGGTCAGACATCAATTCAAGAAGTTAAGTTCTCAGAGAGTGTAACTTGCCTGTTTGGTCGCTGCAGTGAAACTGCCATTAGCTCTTTAGCACAAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_394208_394614_2:0:0_5:0:0_b	147	chrXII	394415	255	200M	=	394208	-407	CTATACGAGGACCATATTACGTAAATCAACAAACCTCAAGAATTAGTGTCATATTTTCTCGCAGATATTACTACTGACATTCAGTCAGCTATATCAATTATGCATGAGCGAATAAAAAGTGCATACAAAAAAGCTTATTTATTGGTCTTAATAAAAGAAACTATGTAGTGCCGAACCTTCGGATACTGTTCATTGGAGTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_625955_626443_7:0:0_4:0:0_11	163	chrXII	625955	255	200M	=	626244	489	TGTTGTTAATTCTATCATTTCTTTGATCACTGACTGGAAGCCCATTAGCGGCCCAGTCCGGTTTAGGAATATCTTCAGGGACATACCTTCTTGGGGTAAGTGGATATGAAGCCTTGACTTTACCAGAATATTTGAATTTTGGGACAGGAACATAAGCACCTTCCAAGCCGTCCTAAGCATTGTGCAAAGCTTTGTGAGCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_625955_626443_7:0:0_4:0:0_11	83	chrXII	626244	255	200M	=	625955	-489	TTCTCTACCACATTGCAAACCGGAGCAATATATATTGGTAGGATGAGAAGCCTGAGCGGAGGTAGTAACTGTTGTAGTTGCAGTGCTCATTATACAATTTTTTTGCTTATTTTTTTCTTGCTAGGAATATACACTATAGCGTTCTTGGGATGAATAATAATAATATCAGTGTTTCTTCTTTATATGAAAAATGAAAAAAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_662505_663100_5:0:0_6:0:0_1	163	chrXII	662505	255	200M	=	662901	596	ACTGGACTGGAAGAGAATGGGTCACGAAAACGTCAATGCAAGGCAGTTAGCATTAAGAAGAGGCTATCCTGATCAGTTCAGAGAGCTCGTAGGTGAAGAAGTAAATGATTCCAACATGGATGCTTTAGCAGGCGGAAAGAAATTGAAAGTTGCAAGACCGCTTAGTGTACCTGGCTCACCAAGAGATTTGAGATCAAACA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_662505_663100_5:0:0_6:0:0_1	83	chrXII	662901	255	200M	=	662505	-596	TTTTTGCTTTTCTTTTAACTTTCGTTGGCACAAACTGAAATATATGTGGAAGGCCCTCTGAAAATATACTAGGAGTTTTGAGCGATCCAAACATTTTCTTTTCTTTTTTTCTCTTCCTTCGAGCGAAGTCCTATTGCCTTAGCTGTATACAAAATAAGTCAATTTCATTAATGAAAAGTGACATTATGGAGGTAGCTCTC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_804157_804654_4:0:0_5:0:0_2	99	chrXII	804157	255	200M	=	804455	498	ATGGGCGGAGCAGATGATGGAAGTGGTGGTTGTGAAGGAGATTTATGATTTTCGGTTTGAATCTTTGTGGAAGAAACGCCGACGACGGCTCCTGGTTCAGACGTCCTGGCATTAATTTCTGCCAAAAATGGCAACCCGCCTGCAGGAACTTCAGAAGATGGTGGTGAGACTGCGTTATCTGTAGGTTTAATGTTTTTTGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_804157_804654_4:0:0_5:0:0_2	147	chrXII	804455	255	200M	=	804157	-498	CACTAGGAAGAGAAATATTAGAGCTTTTTCTTTGGTGGCTTCTGTGTGCTGGCCTTACTGAAGGCATATGCGGTCTATTTTGCGGTACCTTTGGAGCAGAGGAACCTGATAATGGAAGCGGTGGTGCTGCAGATGATGGTACAATGGGAATAGGAGGGGCCGCAGAAGATGCAAGATCAGGATTTGGAGGTGCAGAAGAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_807598_808081_4:0:0_5:0:0_8	163	chrXII	807598	255	200M	=	807882	484	AGCCAGTTTGGAACTGACGCAGTTCCGATAAGGATCGATGAGAAAGAAGGAACGTGGGATAGAATTCAAGATGATAATTCTTCTAATTTAAACTACCAAATTAACAACATTAATGACCCAGCTTCGAGTGGTAAATATACCCAGAGTATTGACTGTAACCATATAGCGGAGTCAAAATTTTGACAAAAAAATGGAAACAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_807598_808081_4:0:0_5:0:0_8	83	chrXII	807882	255	200M	=	807598	-484	CCCTTATGCTGAGTTATTATCTGGTGCCACCCTTGATAAATGTTCGTTGACTCTAAATGAAATAAACTTAAAACTAGTCAATACGCTCTATGACTTTCGAGTAAGCAAAGATAATCCCGAAGTAAATTTGGTAGAACTAATACTTCCGAACTGCGTGGTGTTATTAAACTTTTTTGAAGACATTGAACTCTTGGCCGACT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_964131_964649_5:0:0_5:0:0_a	163	chrXII	964131	255	200M	=	964450	519	TCAGCGCATTTTACCCAATTTTCAAGGCTATGCAAGACGAGAACCTGGTATTAAATTTGCATGGGGAAAAACCTTCTGTCCAATATGGAGACAAAGAACCTATTCATGTATTGAATGCAGAGGAAGCCTTTTTGCCAGCCTAGAAACAATTGCATAATGATTTCCCAAACCTGAAAATAATTCTGGAACACTGCACTAGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_964131_964649_5:0:0_5:0:0_a	83	chrXII	964450	255	200M	=	964131	-519	AAATCCGGTAAATTTTTGCAAACCTGTTGCGAAACTGCCAAATGACAAAAAGGCTCTAGTCAAAGCTGCTGTATCAGGGAAACCATATTTTTTCTTTGGATCTCATTCAGCACCTCTTCCTGTACAAAATAAGGCCAATTACGAGGGTGTTGGCGCAGGAGTTTACTCACAATCTTTTGCGATACCTTATATCGCCCAAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_1019223_1019749_5:0:0_4:0:0_4	163	chrXII	1019223	255	200M	=	1019550	527	CAGTTATGGTTACATTATTAAGGAATACAGAAGAGACTGCATGTGTACATAGGCATATCTATGGCGGAATTGAAAATGAATGTTGGTGGTCCAATGCAGTCCATATTTTTGAATTCTTCATCCATCGAAAAGGCGTAATTTATTTCTAAAGGAAGTTTAAGTTCTACCATAATGCTTTCACTGGTCTCCTCGAGCACCAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_1019223_1019749_5:0:0_4:0:0_4	83	chrXII	1019550	255	200M	=	1019223	-527	TACCCTGCGTTGTCCCCCAACATCTTCACCATCTTAATCAGGACGGTCTCCAGAGCAAGCGTATGACGATTCGTGCATTCGGTTTCTTGCGCCAGGGTATATAAAAATGTTCTCATCAACAGAGACATTCCTATAATCTTCTTTGAAATAGTTGCATCCTTGAATCCGTTAATAGCTTCTGAGAAATAGCGTGGTACCAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_1023125_1023595_6:0:0_7:0:0_d	163	chrXII	1023125	255	200M	=	1023396	471	TGGTTTCGATAACATTTTAGATTATGCATACAACAAAATCGGTTCACCACAGGCAGAAAGTTCTGCATACACGACCTACATGATGAGTTTAAAACATAAAAAGGCCAACGTGTTACATTTACTCTATGCAGTTATTAGTTTCCAGGTGTGTATGTTATTTTTCCTGATATGGTACTACTACATAAAGGGAAGGTTTATGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_1023125_1023595_6:0:0_7:0:0_d	83	chrXII	1023396	255	200M	=	1023125	-471	ATAAGTAGCATAAGCCTTGCCTGGGTTATCTACACTATTCAGTCTAGAATTAATACAGAATTTGAGGCCTTCGGGTTTTCTTACCATCTTGGAGTTACATGGTTTGCGCTTCTGTGGTGTTTTGCAGGTTTCATTTCTGTGTCATGCTTAGCTTGGTCTGGCTTAGAATGGTGTATTTCCGATAAGCGCAACTCCTATGG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_1036541_1037023_5:0:0_5:0:0_10	163	chrXII	1036541	255	200M	=	1036824	483	CTATTTCTTACAGTACCAACAGAATACATACGGATTCTTCTCCTTTAACGCTCTTAAGCTCGACGACAAACTTCGACCCTGTTCACTCAACAAACGTTATTACAGATGATCAACTTAAGTGCTTGCCAAAAAGCCTGGGCGACGTATATTTTTCAAGCAGCGATATTGCTGAGCTGTTTCAAGAATTTGCGACAAAATCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_1036541_1037023_5:0:0_5:0:0_10	83	chrXII	1036824	255	200M	=	1036541	-483	GCTCATTGGTTTATGGCGGAAATTTGGGGCTACAGTCTTATTGACTCGATTATCACTGCTAGTAAAGTCAGTTTTATCAGAAATCACAATATCTCCAATAATTCGATATACTCCATCAGATAAGGACGAACCCGTTCTAAATGTAGCATCTGTATATTCCGTGCAAGCATTTCTTTTATACACGTTCTGGCATCCCTTAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_1065644_1066121_6:0:0_4:0:0_5	387	chrXII	1065644	255	200M	=	4641	-1061004	ATTGAAAACGAAAGTACGTACCGACTCCTTTATTTTTGCAGGCCGGAAATCAAGCGATGAATGAGACATCCTTCTGTTTTCTATGTTGTGCTTGAAGGGTACAGACAGTCGCTTATCTTAGTGAGATTTTGTTTGCTTTTGCTGCACCTGCATAGCGCAGATTGTGCATCTTCTCAATAGCATAAATATTCCATTCTTAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:2
+chrV_573344_573800_1:0:0_1:0:0_1	355	chrXIII	3184	255	200M	=	3441	457	TGCTAGCAAGATCATCGTAGATCCCCACGTATAAATCAGTAACGCCATCGCAACCTTCTTCAATAAAGTTTCTTACAGGGGCCACATTCAATCAACCGCATCGGCTCAACCTGATCATGCAATTAGCAAGCAACACTGTGTACGGTACAAACAGAAACGACACATATTTCACGTCGCCCTTAGACGCCAGTGCTATCAAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:6
+chrV_573344_573800_1:0:0_1:0:0_1	403	chrXIII	3441	255	200M	=	3184	-457	GGTGTGTCTGCCATGTATATTTCATGACATAAGCGCAACTGATGCAAGTCCCTGAATTCAAAGGAGCTGCCAAAGAGTTTCTGGCCTGCGACGAGGATATCGTTTGTACTCTTGGGCTCTCGGGGCCTTTTTCGCGTTACTCTGGAAATTTTTTGATGATGATCTGAACTCGCCGCCTCACCTGCCACTACGTCTTCCGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:6
+chrXIII_88166_88586_6:0:0_6:0:0_a	163	chrXIII	88166	255	200M	=	88387	421	TTAAATTTGGCACAAAAACATTGCTAAATTTTGGATTATTGATTCTCAATTGGGTTAGGTTCCTACCAGGAATCTTTGAAATCCTCAAATTTACGATATTTTTTAGTTCAATTGAATCAGGGCATACCTCTACGCACTTTTCAATAATATGTTTGTTAATAGCTCGTTTAATTATCAATTCTTTATAAGTGTCATAATCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_88166_88586_6:0:0_6:0:0_a	83	chrXIII	88387	255	200M	=	88166	-421	AATTTCGTAAATTCTCTTATACCACCTCTGGGTGAGTTCCTGATGAAAGAACCTAGTGTCAAAGGATAAGATTTGTCCCATTCACCTGGATGAGTGAAAAAGTTCATTAATTCTTGTCCATTAGCGCTGTCATCTAGGTTAACCATTTTCATAGCTTGAGATACGACACCTGCTAACAAATTAGGATCTAGGTTTAATCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_93863_94369_5:0:0_3:0:0_7	163	chrXIII	93863	255	200M	=	94170	507	TGTCGGAGATGATGAAGATGAGCAGTTAAGAAGGGCGCTGGAGGAATCTCAACTGATATATGAGACGCAAACGAATAGCTCTGCGAATCATGGTAAAAATACGAATGATGCGATAGATGAAGATGATGAATAGTTTCTCAGATCCATCAGACAATCAAGAGTGGAGGACGAAAGGAGAAGACATCTTAGAAATCAAACTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_93863_94369_5:0:0_3:0:0_7	83	chrXIII	94170	255	200M	=	93863	-507	GTTGATGCTAGTAATAATGTTGATGAAGACTTACAATTGGCCATTGCGTTGTCATTGAGTGAAATCAATTGAAAGGATGTACATTTGGAAGAGCATATGTTAAATATTTTATTTATAGATTGTTCGTTGTGAAATATTATTTTTTTTTTTTTGAATAAAATGTCGGACTTTATTCCTCCTAATTATTAATAAAATACGAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_147038_147473_4:0:0_1:0:0_6	99	chrXIII	147038	255	200M	=	147274	436	CCAAATTGATTCCAGAAGTTATCACCAAGGAAATCGACAATGCTACCAAGGACATCTTCCCACTACAAAACATCCACGTTAGAAAGGTTAAGTTATTGAAACAACCAAAGTTCGACGATGGTGCTATGATGGCTTTGCATGGTGAAGGTTCCGGTGAAGAAAAGGGTAAGAAGGTTTCTGGTTTCAAGGATGAAGTCTTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_147038_147473_4:0:0_1:0:0_6	147	chrXIII	147274	255	200M	=	147038	-436	TTTGACATGTACACAATTTATTAATATGTTTTCTCTTTATTATTAATATAATTAATTATTACTAAAAAAAAGAAGGTGACGCACCATACAGAACTTGCTCTTTTGTCCAATACTGTCTTTTTATGGTTGTTATTTTTTACCTTACCGATTTCGGTTTCTATTGAACTGTAATAACTTGCCTATGTGTCTATATGCCTTTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_148415_148921_2:0:0_3:0:0_b	99	chrXIII	148415	255	200M	=	148722	507	TCCCAATTTTCGTCTGCTACTTTCTTTGTGTCACTTGATGACTGCAGATCCAAAAATCGAAGATGAGCACTTTCTTTTAGTTGGGAGATATTTTGCTCAGAAAGTTTTTCAATCTTGCTATCATCATTGGATAATGTGCCATTTATAATGCTTCCTGTCAGCTTGGTTACTTTTCCTAAGATGTCTAAATATTTATTGAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_148415_148921_2:0:0_3:0:0_b	147	chrXIII	148722	255	200M	=	148415	-507	TTTTTTACAGCCAGTTGTTGTATTTTACTTTAATTTAGATAATGTTTCACTTTTTTCTATCGAAGGAGGTTCACCAAAATAATAGAAGGAACAAAGCGCAAGAAAGAAAGATAAAAAGGTGTCAAAGATCCAATATCAAAATAAATACAGATAAAACCGCGGAACTATGTATCTCGGCCTTGTTTATTATAGCAGTTTGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXII_219746_220211_0:0:0_2:0:0_f	355	chrXIII	184959	255	200M	=	185225	466	AAATATGTCAGACCACCACCAATGTTAACCTCACCTAATGATTTTCCAAATTGGGTTAAAACATACAACAAATTTTTACAAAACTCGCATCTCGGTGGTATTATTCCGACAGTAAACGGAAAACCCGTACGTCAGATCACTGATGATGAACTCACCTTCTTGTATAACACTTTTCAAATATTTGCTCCCTCTCAATTCCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:3
+chrXII_219746_220211_0:0:0_2:0:0_f	403	chrXIII	185225	255	200M	=	184959	-466	TATTGAAAAAATGCAATCTGATACCCAAGAGGCAAACGACATTGTGACCCTGGCAAATTTGCAATATAATGGCAGTACACCTGCAGATGCATTTGAAACAAAAGTCACAAACATTATCGACAGACTGAACAATAATGGCATTCATATCAATAACAAGGTCGCATGCCAATTAATTATGAGAGGTCTATCTGGCGAATATA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:3
+chrXIII_310709_311229_1:0:0_2:0:0_1	163	chrXIII	310709	255	200M	=	311030	521	TAAATGAGCTAAAGATAGAAAACAATGTAGAAGAAAAAACTGTTGGTTATGAATATGTGGCAGAATCCGAAGAAACAATTGATTTCATGCATATGCTGTCATCCGTACCACAAACATATCAATTCCTAAAATCAAACATCTACATAACGGAACGGGACCCATATAAAATAGGATGTGTACTAATGGACAACGGTTCCAAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_310709_311229_1:0:0_2:0:0_1	83	chrXIII	311030	255	200M	=	310709	-521	CTTTGCGAAATTGCTTAAATTTGGATCCAAATAATACAATTGCATTGGAAAACTTAGCAATTCACCATATAAATCAACAAAATGAATCAGAGTCATTGAAACTTTTTCACAAATGGATTCTTTCAAAATTTTCGAAGGTTTTCCAACCTTATGCGGGGGAAAACAAAGATAGCATTAATATAATTCCGAAAAAGGCCCAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_392912_393390_4:0:1_8:0:0_4	163	chrXIII	392912	255	200M	=	393191	479	AACTCAAGAGTCATACGCTAAGGTGAGAGAAGTATACGAGCAATTTCATAACACATTCCCGTTTTATTCACCTGCGTGGACTTTGCAACTAAAGGGTGAATTGGACAAGAGATGAATTTGAGACTGTTTAGAAGATTTTGGCTGAATGTCTTTCTGGCAAGTTGGAAAATAAATACCTATCTCTTTGGTCAACATATTTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_392912_393390_4:0:1_8:0:0_4	83	chrXIII	393191	255	200M	=	392912	-479	TATGCAAAAGTGTGCAATTGTTGAACCCAAATCATCTTCTTTTTGGAACGTATATCTCAATTTGTTAGAGCAGTCGAAGCCATTCAACAAATGGGAGGAGCAACAGCGAATTGACATGATCTGAGAATTCTACAAGAAAATGCTATGTGTTCCTTTTGATAATCTAGAAAAAATGTGCAATAGATACACTCAATGCGAAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_468755_469238_3:0:0_7:0:0_c	99	chrXIII	468755	255	200M	=	469039	484	TATTGGAATGGAAACCCATGTACATTTTATTAGTAAATTTTCTTATATTAATCCTTGGTGATTTATTTTCCAAATGGTCTTCAACTGAATCACGAATAGTATGTAACATATCATTTCTTGAAGTGTAAGTAAAACATATAAATAAAGTGAAATCGTCTCCATCCTGTGTGAATTCTTCCACTTTTTTAATTTTTTTTCAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_468755_469238_3:0:0_7:0:0_c	147	chrXIII	469039	255	200M	=	468755	-484	GCGAATTCATCAAGCTTTACCGTATACAAATTCATTAGCGTATCTACTTCTTCTTTTGGTATATTAAAATTTTCAATAGAAAATGCATAGGCGGAAACACATTTTACACCCAAGCTTTTGCAGATATACAGTAGTGTTAGGAACGTTAACCCACCAGCTTCATGGCCTTTTTTTACTGGTAGCCTGCGTGACTGGGCATA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_561181_561703_2:0:0_5:0:0_d	99	chrXIII	561181	255	200M	=	561504	523	AACGAGGTGATTCAAGTAAATTTCGCCATTGAGTCTACCAACAAACCCTTCCAGAACACCTTATTGATAGGCTTACCTAATAAGAACCTAGAAATGGCTTTTGAACCCGAAAATAAGGACAATGGCAAGTTGTCCATTTATAAATACAGGATAGATTTAGCCAAGCTGGATGCTGCTTTGTTGCAAGAGGCTTCCAGATC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_561181_561703_2:0:0_5:0:0_d	147	chrXIII	561504	255	200M	=	561181	-523	TGTTGACAAATTCGGCATTAAGCCAGAAATCCATCATATATTTCATGCCGAGCCAAAGAGAGTTGCCATACCAATTGCTGTGATTTTTGTTTTAATTATCTTCATTACCATTTTATCTTTAATAGTCACATGGTTGAATTCTTGTGCCCCCGCTTTCAATAACATCCCGACCGGTGTCACTGCTGTATATTTCCTAGGAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_584353_584902_9:0:0_3:1:0_5	163	chrXIII	584353	255	200M	=	584703	550	GCCTGCTCACAAGAAAGGCATCGTCTCTTAATGGTTTTTGAAAGCCAAACTTTACGTACATGGAAGCCTGAGCTTTTCTTAGCCATTCAAAGGACTTTGCAGTTCATAGCCTTTCCCTGCCTTCACGGTTTTCTTGAGGCAATTTCAAAATTCTTTCATCAAACTTGCGTCGTAATTCGTTGTCAGACATTTGCTTGCAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_584353_584902_9:0:0_3:1:0_5	83	chrXIII	584703	255	200M	=	584353	-550	ATGAAGTCAACTTTCATCTCTAAGCTAAGACCTTGTACTGACGAAGAACGGGGTGACTTTCTGCCTTTGAGGATATCCAGATGGAAACCATGGTTGATTGTATTGGTTGGGGATACATTTTGTATCCTAGAAATATTGACACAAATTTTCGAGGTTTACCAGAAAGTAATGAGCTCCTCCAACTTATCCTCAATGATGTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_793234_793743_3:0:0_5:0:0_8	99	chrXIII	793234	255	200M	=	793544	510	GTTGCTCAATTCCTGGTTGTTTCAGTCTACCTTGATCATACTTGATTCAACCAGCTTAGCAGTCTCCGAGTTGGTGACATCAGCCTCGAATTGAGGGGTATATGGTAAGAATAAAGAAGCGACGATAATAGTCATTGAGGTTGGCCGTGGTTATTAGTCTGTGGTTTTTTGAATAGGAAGCAATAAATTATAAAGCCAGG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_793234_793743_3:0:0_5:0:0_8	147	chrXIII	793544	255	200M	=	793234	-510	CTTGATGCTCCATGGAGTTGCAGTTGCTGCGTGCTGAAGGGGATTAATTAATTCCAGGGGCACCGCGCGAAGACCAGGAGGACAATTGATTACGTAGGGAAGAAAGGGCCCTTTTACAAGACTGGCAATTGCAACTCTATCGAGGTTAGGTGTTACACTTCGCTGTTCATTGAGGAAGTAGATGAATAAACTTGTTGATG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_817055_817615_5:1:0_3:0:0_3	163	chrXIII	817055	255	200M	=	817416	561	ACTAGTTTGTTGATATCATTCAGCTGACTCATAGTGTTACTTTCTCCGACGACATTGGCGTCAAAACCAAAAGGGATTACTCTAAGATTATATTCTCTTTCCTTCATAATATACAGTTTAGAGGCGTTTTGATCTTTACCGACAATGCTTGCATCAATAGTGTAATTGATCGAAAGGTTGTCATCAGACATATCGTTAGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_817055_817615_5:1:0_3:0:0_3	83	chrXIII	817416	255	200M	=	817055	-561	GCAGTGGCAATTTGAAAATGAAGAATTTCTTGTACTTGACTCCGGGTTCCAGAACCCGGCTATTGTTTAGCCCAAATACAGAACCATCGTAGTCATCATCTGCGGGAATGAAGTCCACACCGGACCCCAGTGCTATTTTCGAGTATCACCAACAAGCGCTCAAGTCTACCATCCTTAAAAACCGTTTAATCGTTCTTTTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_826701_827229_7:0:0_8:0:0_2	99	chrXIII	826701	255	200M	=	827030	529	CCCCTGTTGCCATCTCTTCCCTTCCGTGCAGCCTCCGCGCTGTCAGATGGTCCTCCGGTAACGTAACCATGGGAACTAGCAAAAAAATTTCCTAATCTGAAATGAAGTTCCATTAATAAATCTGAGTAACATGGGCTCTGCATCAAGATGTGTTTTGGCGTCGTCTATGTTATCTTTTCTTTTTTCGAACAATACATTTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_826701_827229_7:0:0_8:0:0_2	147	chrXIII	827030	255	200M	=	826701	-529	TTTGGAGTTTTCCAATTGGAATTAATCAGATACATTATCTGTGTTGGAACTTCCGCAACCAGAACTTTTTGATCGATCTGTATTGTAACGATTTTTCTGAGGCCGTCTTGGACCACGGTGGGACGCCGAGGGCCATGAAGAGGTCCTTCTCATTTGAAACAGTGTAGAAGGTGTATCCAACTCGTTGCCAGTTGCTCTCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_833253_833690_3:1:0_6:0:0_0	99	chrXIII	833253	255	200M	=	833491	438	ACTCTACACAGTAGATATATATATAAAAAAGTCCCATATTATTTACATCCTATAGAATAAGAATATGGAGAAAAATAAATGCTAATTCTACTTACACATTTCTTACCAAAGTCTACCTATAATCATACCATCATCTTCATCGTCATCGAAACTATCTGGCCGCACTTTCTCCCTTTCCTTTTTGTTCTCAATCTTGTTTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_833253_833690_3:1:0_6:0:0_0	147	chrXIII	833491	255	200M	=	833253	-438	AAAATATTCAAATCTTTGGTCATTTTTCTATCAAAACCATAACTATCAATGAATTCCCTTACCGCTGATAATCTACCTCTATTTAAAAGCTCCTTTATAATACATTTTTGCTATTTGATATTGATATTGTTAACTTTTCCAGCATTTTCTGCTCTCGTTCTTTCGATCCCCGGTTTGAAACTCCTGAAAACATCAATTCC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_843242_843670_4:0:0_3:0:0_9	99	chrXIII	843242	255	200M	=	843471	429	TTTTATACGTTGTTCTGTCAATAATTTGGAAATCAAGGACAAACTTTCCAAATCCTTTTTGACAGGTGATGCTTCGCTCTTGGGTGTACCGAGTATCCTGTCAACATCTACATAAGTGGCCTTTGGGAAGTTGGACACAATGCCTTTCCGGATTTTAAAACTGTCATACATAATTTCAATTGATTTTCCACTGCATTTAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_843242_843670_4:0:0_3:0:0_9	147	chrXIII	843471	255	200M	=	843242	-429	ATAGTTGTCGTCCTTTGTCCTTGTTTCCCCAAATCTGATAAGTGACAAATAGATTGAGGTAACATAGGAAAAACCGTATCTGGTAAATATGTGGTAAATGATCTTTTCAAGGCAACATTTAGGATATCTGTACTTATAACCTCAATATCAACATTAGTGCTTTCCGGAAACATAGAAGTTGGATCCGCAATATGAATATA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_875476_876017_4:1:0_2:0:0_e	163	chrXIII	875476	255	200M	=	875818	542	CGCTTTGGTTCTTATACGAAGGGAGCTTGAACATAACAGGGTATGTGCGCATATTGAAGGATCCTACTGGTGTCTTGTGGCATAATTTCCTGAAATATGACTCGAAGAAAGTCACGGGCTATGTTGGCTTCCGAAATCAGGGTGCCACATGCTATTTGAATTCGTTATTGCAATCTTACTTCTTTACAAAATACTTCAGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIII_875476_876017_4:1:0_2:0:0_e	83	chrXIII	875818	255	200M	=	875476	-542	CTGCGGAATCCTTCACTCAACACGATGTGCAGGAATTGAATAGGATATTAATGGACAGGCTGGAAAATAATATGAAGGGAACACCCGTGGAGGGGAAGTTAAATGTAATATTTGTCGGAAAAATGAAAAGTTATATTAAATGTATCAATGTTGATTATGAATCTGCTAGAGTGGTGGACTTTTGGGATCTGCAACTGAAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_573344_573800_1:0:0_1:0:0_1	355	chrXIV	3091	255	200M	=	3348	457	TGCTAGCAAGATCATCGTAGATCCCCACGTATAAATCAGTAACGCCATCGCAACCTTCTTCAATAAAGTTTCTTACAGGGGCCACATTCAATCAACCGCATCGGCTCAACCTGATCATGCAATTAGCAAGCAACACTGTGTACGGTACAAACAGAAACGACACATATTTCACGTCGCCCTTAGACGCCAGTGCTATCAAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:6
+chrV_573344_573800_1:0:0_1:0:0_1	403	chrXIV	3348	255	200M	=	3091	-457	GGTGTGTCTGCCATGTATATTTCATGACATAAGCGCAACTGATGCAAGTCCCTGAATTCAAAGGAGCTGCCAAAGAGTTTCTGGCCTGCGACGAGGATATCGTTTGTACTCTTGGGCTCTCGGGGCCTTTTTCGCGTTACTCTGGAAATTTTTTGATGATGATCTGAACTCGCCGCCTCACCTGCCACTACGTCTTCCGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:6
+chrXIV_19790_20275_3:0:0_6:0:0_0	163	chrXIV	19790	255	200M	=	20076	486	TGAGCAGAGAGCATAAAAATCTGCCCCGGTGTAATTAAATGGACATAGCTTTGGCAACTCAATAAGCTTTACGTCGTTGTCGAGCACGAATTTGCGAGTCAGAGCCTCTAAAATATTCAATTGTTTGGTATCCGTATCCGGAATGCCTAAATATAACAATTTATCGAATCGTCCTGGTCTTAGTAGTGCTTCGTCCCATC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_19790_20275_3:0:0_6:0:0_0	83	chrXIV	20076	255	200M	=	19790	-486	ATACGATCCATTACACCACCCGAATCACCTTGATTACCACGTTTCGGTGCTACTGAATCGATTTCTTCGAAAAATTTGACACAAGGTTTTGCCTCTCTCGCCTTTTGAAACACTCTGCGCACATTAGCTTCACTCTCACCAATGTTCATATTCAACAGTTCAGGGCCTTTAACACTAAAAAAATTTAAAGAAAAATTTGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_22782_23237_1:0:0_5:0:0_2	163	chrXIV	22782	255	200M	=	23038	456	CTATGTGGTGTAAGGAAGTGTAGCAATTGGCTACATGATATATAAAGTTCTTTTATCTCTTTCTTAGTAAAACACTTCTTTCGAGAACTTCTTTCGCCTCATTTATCTTGGCCGCCATGTAGGGACTCCCTGCTCTGTCTGGGTGGTTACGAACCATAGCCTTCCTGTGCTTTTTTTTCAGTAATTTTTCATCCAAGTGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_22782_23237_1:0:0_5:0:0_2	83	chrXIV	23038	255	200M	=	22782	-456	CGGTGCAAAGCCTACCTGGTACTGGTTTAATCTATTTTTCAGTTCTTCGTCTATCAGTGAGCTTTTGAACTTAAGTGCATCGCGGTAGCCCGCCGTCGGGTTTTCTATGCGAATGTTATTTAGTTGTGCAATAGTTAAAGCGGACAGGGTCTTGTAGACGGTCCATGCATTCTGACCAGACTTGACACTTAGAGCAACCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_27823_28329_3:0:0_3:0:0_5	99	chrXIV	27823	255	200M	=	28130	507	AACCACGTCCCAAGCTCATAGCAAGTATAAATTAGGACTAAGAACTCGTATAATGTTGTGTACATTAAGAATTTAATAAAAAATTTTTGATTCCTAAAACCAGTGCATTCAGCGAACCAAGGGCAAAGATGATCCATTTTCAATATGCAAACATCGCATGATGAACAATGATGACAGCGATCGGGCTTCCAAACATGGCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_27823_28329_3:0:0_3:0:0_5	147	chrXIV	28130	255	200M	=	27823	-507	CTAACAAATCAGGGAAATCTAGAGGAGAACCGGGACCTCTAGCAATAACCTTATAATAAGTGTATAGTGCCACTGCCAATGTCGGAACTATTGTTAGCGCGAGAAACCACCTAGGTATTTGATGAATCCGTGTCAATGTTATGTATGCAGTCCAAATATACTAACATGTGGTCAAACACCTGGGAAACAGACTTGTCAAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_118854_119338_2:0:0_2:0:0_8	163	chrXIV	118854	255	200M	=	119139	485	TACATGTATATCTATATCTAAATTTATATATAGACAAACAGCATTAATTAACTATAACAAAGTTTCTAGTAACACTAACGGTAGTAGTAGATTTCTCTTTTTTGTCCTCGATGTTAAAAAACGAAAGAAGAATGAAAAAAAAAAAAAAAAACAGAAGAGTAATAGCTAGTGCTTTAGAGCTTTCCACATTTTGACCGCAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_118854_119338_2:0:0_2:0:0_8	83	chrXIV	119139	255	200M	=	118854	-485	TTTCGTTTAGCGGGGATAATACATCACTGAAGTAATTTTTAGATCACTCGTGGCGTAAAAGTAAGCATATCGCAATAATCATACTCATATCCTTTATCATCCAAAAAGTAGTAATAGCGCTGGCAAGGCATGTCGAATGAGAGCACACGAGTTACCGTTAGTCGCGGTTGTACAGCCTCCGACGAGTGTGCGCATGCATT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_201372_201956_5:0:0_7:0:0_6	163	chrXIV	201372	255	200M	=	201757	585	CAGTCTCATTGATCAATGATCCAAGACACCCATATGGTAAATTAATTAAGATCGATCGTTTAGGAAACGTCCTTGGCGGAGATGCCGTGATTTACTTAAATGTTGACCATGAAACACTATCTAAATTTGTTGTTAAGAGATTACAAAATCACAAATCTGTCTTTTTTGGATCTCACACTCCAAAGTTCATGGACAAGCAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_201372_201956_5:0:0_7:0:0_6	83	chrXIV	201757	255	200M	=	201372	-585	AGACTCCGGTAAAGACGGATTATACGTGATCACTCAAAAGTACTTCGAGGAGTAAGGCTTTCAAATTGTGGTCGATAGCAATGAATTGCCAAAAGAGCTGGCTTCAAAATTCACCTCTGGTAAGGAAGAGCCGATTGTCTTGCCCATATGGGACCCAATGGGTGCTTTGGCCAAATAAAGAGTTTCAGCAGCTCTGATGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_340528_341049_5:0:0_2:0:0_4	99	chrXIV	340528	255	200M	=	340850	522	AGAAAATATTTGGACAGTGGTGATTACGCTTTGCAGACAGCTGGCATTCAAAACAATGATCCAATAAACTATGGAAAGAATAACCTGCCATTAACAAATCCCAGCAAACTACGAGAAGATATAATAAAAAGAAGGATAAGCACTTGTCCGTCAACTGCCTCAAGCGCTGTTGTAGTAGATAATGCGACGTTGATACAAAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_340528_341049_5:0:0_2:0:0_4	147	chrXIV	340850	255	200M	=	340528	-522	CCATTAGATAAATAGACAACCTGTACTTTTTTATATTTTTTTAGGGAAAGAGAAGGGTCTCTTATATTTAACGCTTATTATGTGATTTCTCGAAATGTCAAGTGTTACAGCCATATGGCTCACTGTGTTTACGTTAATTAGTTATATATAAACGATAAGCCATTCTGATCTTATCTTCTTGTACTTCTAATTAATAATAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_369689_370164_2:0:0_3:0:0_1	99	chrXIV	369689	255	200M	=	369965	476	CTGACGAGCTTGTCTTACTGACGAAGCAAACATAGCCCTGAAAAGGGCAAAATCAAGCCTTTTTTCTAATACTGCAAAAGTTTGTAATAAAAAAGGTGTTTCCTTGATTTCACCTCCACGCAGTGAAGCATCCAATTGTGCTACTTAATCCAATTTGGGTTTGAAAACGGTTTGCCATCTCTTTTCTGTCAAATGTTCAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_369689_370164_2:0:0_3:0:0_1	147	chrXIV	369965	255	200M	=	369689	-476	CTTTTGGTACAAATTAAACAAATTATACTTATTGAAAGAAGTGCGTACTCGTCCTATTGCCAAAGATTTTAGCAAATTAGCCTTTCTTGGCATTATCTCTGTATTTTAATTGTAACCAGTCTTCCGTACCAAAAAAGTATAAAGGAGCTCCTACTCGATATTTATTCGAATTAGTTGCACTTCCTCTGGGGAAACCTTCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_444006_444414_1:0:0_5:0:0_7	99	chrXIV	444006	255	200M	=	444215	409	AACGTTCATGGTATTGACAGCTCTCGGAATTACTATTTTTCTCGAACACATGAAAATTTCATACAGATACTGCTCAAAATCACTCTTTTTTGAAAAAATTACTGCAAAGAACCCCTTTAGAAGAAATCACAATGTTGCTGCTTCCAAATTATATAACTTTTAACATACTTCTCTGATAGATTTGCTTTGCAATGGTCTCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_444006_444414_1:0:0_5:0:0_7	147	chrXIV	444215	255	200M	=	444006	-409	TTAGTTCTGGAGAGGAGCTTTCTAGATCGATGAAGGTATTGGCGACTTGTAATTCCAACTCACTTGGAGCTTGGGAGAAGATCTTGGATTGGACAGAGGACATTGGTCAGTTATGTGTCTAGTCTTTAGTGTGTTGGTGTCTCTTCTGTTTGTATATACAAAGTCAAATAACACATATGTTAACCATTATCAATAGCATT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_500006_500526_4:0:1_3:0:0_a	99	chrXIV	500006	255	200M	=	500327	521	GCTAAATTCATTGAAGTCAGAAACTTTTTGGGTGCCAAGAAGATCAGAAACGTCCCAGTTAGAGATGGTGTTACTATCGAATTCTCTACTAACGTAAAGGACGAAATCGTCTTATCTGGTAACACTGTTGAAGACGTTTCCCAAAATGCCGCTGACTTGCAACCACTCTGTGGCGTGTTAGAAACAAGGATATCCGTAAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_500006_500526_4:0:1_3:0:0_a	147	chrXIV	500327	255	200M	=	500006	-521	GTATTATGTAAAGACTGAGGTTCTTTGTCATTGGATGTGCCTCACTTCCAATGATGAATTGACTGGCTCTCTAGGGAATGCTGTCAAGGGGAAACGTTGCTAGTGCTCATTGAAATAAAGAGCCACTTTACGTTTTCTCAAATTGCTTTTGGGTTTTCTTCTATTGATGCTAATTGCATATTTTTTGGTAAAGGAAAGAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_611746_612236_5:0:0_3:0:0_b	99	chrXIV	611746	255	200M	=	612037	491	AAACATGGTTCAAACGCGATTCTATTTTATTATCTATGTCTTTATTATGTAGTCTTCAGTATAAAAACCGTTAATGAGGGACATAGTTGCATCAGTTTTTAAGGCCAATTTGATTCAGAACCTTTTCAAGTTCTTCACTTTCCATCTTATCCGAAGCCGCGATCTGGTGGCATCTAATACTATGCTTCTCGAATATCGTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_611746_612236_5:0:0_3:0:0_b	147	chrXIV	612037	255	200M	=	611746	-491	TAGATTGCCTATAGCCTGCTATTGCCCTACTCATAGAATCTATGATCATTTGAACGTAGTGTAAACCGTCTAAACCAAAAACATCTCTATCATATTTAGTATTTATGAGCAAAACTTTTTTCGTATTATTAGATTACAAAATTACTTCAGCAAGATTACCAAGAATAAGGATTGGGAGTAAACTTGTCATTAAAGAACCG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_696249_696837_4:0:0_5:0:0_9	163	chrXIV	696249	255	200M	=	696638	589	AATCTAAGAGAAACTTCACCAGAAGAATCGGTGATATTCTTGTAAATGCTGCTACCGGTTCAGGTAAAACTTTGGCTTACTCCATTCCTATTGTTCAAACCCTCTTCAAGAGACAAAATAACAGACTGCGTTGTATAATCATCGTCCCCACAAAACTATTGATAAACCAAGTTTATACTACGTTGACAAATCTACCTCAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_696249_696837_4:0:0_5:0:0_9	83	chrXIV	696638	255	200M	=	696249	-589	AACCAGTCCTTCCAGGGCTGGTGTCCAAAACTTATGTCCCATTGGAAAACGGATAAATTAGATACACTTCCAGCGAACGTGATCAAAATGATCTTAAGTGCGACATTGACTACCAACACAGAAAAGTTAAACGGCTTGAACCTTTACAAACCAAAGTTGTTCCTGAAGCAAACCGATAAATTGGACCAGCTACCTAACAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_727664_728211_4:0:0_7:0:0_c	163	chrXIV	727664	255	200M	=	728012	548	GACAATCAAATATTGGGATCATAAACACACATAATCGCCATATGCGTTAATTCGGGTTTCAATCACTTCGTTTGTCTATGGTATCGCAGCCTAGTGAATATTTAATTGTTTCAATAAAAAAGGCTTAAAATCCCCATGAAAATCACAAGAGGAATCTTTCAACAAGAACAATAGTATACAATCCATGAATGAAGGAGTTC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_727664_728211_4:0:0_7:0:0_c	83	chrXIV	728012	255	200M	=	727664	-548	CAGGGACAACCACTCAGTTTATGGCTTCAGTGCGCGCCCAGGTCTGCAGCAAAGCATTATCGAAGTAATAAAACTTTATAAAAGCTCTCCCCAACTATTGAGGATTGCAGTATCCAGATACCCTTGTTTTCTGCCAAATGAACACTTTTACTATGTCATATAAACAAAAAGTGCCATTTCTGGGTACTGCTTCAGTCTTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_758471_759074_4:0:0_2:0:0_3	163	chrXIV	758471	255	200M	=	758875	604	GAAGAATAGGAAGGCATTTGAGTTACCCGTGGATCGATTGTACGTTTTGAAACAGAAGTCAATAAAGTTCCATTTAATTTTGTCCCCGAAATAGATAAAGATGAAGAAAATAAAGTCGAAGTCGACGTCGAAGCAGTTTGAGATAATAATGTGGTGACTTTACGCATTGTTGATGCACTTGGCATGACTGAGGCGACGCC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXIV_758471_759074_4:0:0_2:0:0_3	83	chrXIV	758875	255	200M	=	758471	-604	CACTCTATTTGTTGGCGAAACTGAGAGAGGGCTATGAGAAGCTGCAGATACTCTTGTTACAACCACCGATTGTGCAACATAAGGCTCACCTACTGTCAAAGTAGCGTAAGATAATGTTTCAATTAAATCAGTTTCCAATATTTCGTCTGCATTATTCGATATGAAACTTATATATGAACATTCGACGAAACTTAATAGAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_876300_876846_11:0:0_4:0:0_0	409	chrXV	122492	255	200M	=	122492	0	GTACCTTTGAACCCAAAAGGAAAGTAACTTAGAGCTCCAGGTCAACCAGGTCATTATATAGAACAGGTTGAACTAGAAATAGATGAAGATGAATACAAAGAGAAAGTGCATGAAATGCAAAAGTTGATTGGGCTAGCTTCATATGTTGGATATAAATTTAGATTTGACTTACTATACTACATCAACACACTTGCTCAACA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:2
+chrXV_176307_176892_1:0:0_8:0:0_0	163	chrXV	176307	255	200M	=	176693	586	TGCTACGAGATCATTATCTATGCTAGCCAGGTCCAAGGGTAACGAATATTTGATTCGCACTTTGCAACCATTACTAAAAAAAATTATCCAGAACAGAGATTTATTTGAAATTGAGAAACTAAAACCGGAAGATTCAGATGCTGAACGTCAAATAGAGCTCTTCGTTAAATACATGAATGAATTATTGGAATCCATATCCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_176307_176892_1:0:0_8:0:0_0	83	chrXV	176693	255	200M	=	176307	-586	AGCGTACCTTCATCAGCTTGGCTAAAGTTATCCAAAATATTGCCAATCCCTCAGAAAATGGCTCCAGATGGCCAGCTTTGTGTTCCCAAAAGGTTTTTCTTAAGGAATGTAGCGATAGAATTTTCAGATTCCTAGCTGAACTTTGTTGAACAGATCGCACGATAGACATCCAAGTGAGTACAGACCCAACGCCAAGTGCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_178018_178568_1:0:0_3:0:0_6	163	chrXV	178018	255	200M	=	178369	551	AAACTATTGTGCCACCTACTGTTAGTATCTCTTATTGGTCTGTTTGATGAGAGTAAAAAAATGAAAAACAGTTCGTATAACCTAATAGCTGCCACTGCGGCGTCATTTGGTTTGAACTTTGGCTCCCATTTTCATCGCTCTCCCGAGGTGTACGTCCCCGAAGATACTACAACATTTTTAGGTGTTATTGGAAAGTCTCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_178018_178568_1:0:0_3:0:0_6	83	chrXV	178369	255	200M	=	178018	-551	GATGATGAAGAAGGCCCCGAAAACATAGCTCACATTTTCAGAATTCTTATCAGGCTCTCTGTGAGAGAGACTGACTTTAAAGCCGTATACATGCAATATGTTTGGTTGCTACTTTTAGATGATGGCCGCTTAACTGACATTATCGTTGATGAAGTTATTAATCATGCGTTAGAAAGAGACTCCGAAAACCGCGAGTGGAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_216562_216984_4:0:0_6:0:0_3	163	chrXV	216562	255	200M	=	216785	423	GAGGGCGAAAAATAAAAACTGGAGCAAGGAATTACCATCACCGTCACCATCACCATCATATCGCCTTAGCCTCTAGCCATAGCCATCATGCAAGCGTGTATCTTCTAAGATTCAGTCATCATCATTACCGAGTTTTTTTTCCTTCACATGATGACGACGGTTTGAGTATGCTCGCAACAATAAGACGACGATGGCTCTGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_216562_216984_4:0:0_6:0:0_3	83	chrXV	216785	255	200M	=	216562	-423	GCGAGGTGCCGATGGGTTGCTGACGGGAAGAGTGTTTACCTTACGGACCTATTGCCATTGTTATTCCGATTAATAGATTGTTCAGCAGCTCTTCTCTACCCTGTCATTCTAGTATTTTTTTTTTTTTTTTTTGGTTTTACTTTTTTTTCGTCTTGCCTTTGTTTCTTGTTACTTTTTTTCTAGTTTTTTTTCCTTCCACT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_277943_278444_6:0:0_5:0:0_7	163	chrXV	277943	255	200M	=	278245	502	GGAACCTCAATAACGATCTACAATAATCATGTTCATCTCCCTCATTGTCTCTTATTTGATGTTACACACGCTTTTCTAGCATAGGAGGAACTTCCATATGCATACTAATAGATCCTGCTCATAAGACACGTATTATTCTGGTTAAAGACATGTCCCCGTCTAAATGTTCTTCTAAATCAATCCATACCGATCCCTCATTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_277943_278444_6:0:0_5:0:0_7	83	chrXV	278245	255	200M	=	277943	-502	GAATTATATTTCTGTGATTAAATTGGCCAATTTGTGAAATTGTCGTGTGGAAAGATTAATCAAAGTTTTGAAAGCATTAGGTTTCGAAAATATTACAACCACGTATATATTATCAAAAGAATACGTCGAATTGATTTTACAAGAATACTACTTTGCCCTTCCGAATCTGTCAACGTCTACAAATTTAGATAATGTTTATG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_279785_280344_3:0:0_3:0:0_4	99	chrXV	279785	255	200M	=	280145	560	TCAAGTGTTGACGTTCGTGAAACTTTTGACTTTAGGTTAAAGAAAAAAATTATTAGGATTGGAGGTTGCAAAGTAAACAACGGTGTCATCAAAAAGAATTCATTGGTGCAGGTAGTTAGAGGTCCTAACGAAGATGTAATTTTTGATGGGAAAATCTCTACTTTGAAGCACAATAAAGATTACGTAGCAGAAGTTTCAAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_279785_280344_3:0:0_3:0:0_4	147	chrXV	280145	255	200M	=	279785	-560	AACGCATCGACACGTAAAGAAGATAAGCACACAAAAACTGTACATTTGTAAAAATACGTATATAATCTATGTAAATACTGTAAACTAGTTAATTATCAAAAATTCATGAATGACAAATTACCCACTATTCACGTTCTCGATTCCCACTGAACTTTGACACATTCTTCTACATAACCGACACCATGTTCATCAAATTCAGG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_309242_309769_3:0:0_5:0:0_f	163	chrXV	309242	255	200M	=	309570	528	TACTTCATGACAAAATATAATTTTCCAGCTCAAAAATGTTTGTTTTTTTATGTAGAGACTATTTTCAAACTATCTTTGTTAAATTACTCATCACCATCGTTGAAATCCCGATTAATCCAACTTGGCCATGCTAACTCCTTTCTTAAAAAATCTTTGAATATCGTAAACAAAAACTGTTCTAGTTCTCCACCACTTCTTAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_309242_309769_3:0:0_5:0:0_f	83	chrXV	309570	255	200M	=	309242	-528	TGTCATCCAGTGCAGGATCACTAACATCACACAGAAAGCTAAGAAATAGTTGCTTTGATAAACATGCAACAATGCATAGGGAATCGAGACCGATATCACTGATAGAAAGTTTTACTGGCAAAGTCATAAATTTTTCTACGGGATAATTCAGCACAAGGTCGGCACAAATCGTAAAGACTAAGTCACCCTTGTACTCGACC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_327632_328099_5:0:0_2:2:0_d	163	chrXV	327632	255	200M	=	327900	468	CTCTAAAACTTCGCGAAAATTTACATATTCTGAACGAAGTGTTTACGAACCCTTCAATTGTGAACGTTTTTCACGGTGCATTCATGGATATTAATTGGCTTCAGCGAGATTTAGGTTTGTATGTCGTTGGTCTCTTCTATACTTACCATGCGTCTAAATCAATCGGTCTTCCTAGACATAGTTTGGCCTATCTTTAGGAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_327632_328099_5:0:0_2:2:0_d	83	chrXV	327900	255	200M	=	327632	-468	ACTCATGACGGCATATGCTAGAGCAGATACTCACTTTTTACTAAATATATATGACCAGTTGTGAAACAAACTTATCGAGTCTAATAAGTTAGCAGGTGTTCTTTATGACTAAAGAAATGTCGCAAAAAGAAGGTTTGAATATTCAAAGTACAGACCACTGACACCTTCTTCAGAAGTTTATTCTCCAATCGAAAAAGAGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_363464_363905_2:0:0_7:0:0_e	99	chrXV	363464	255	200M	=	363706	442	CCAAACTTTTTCCACGCTTCCGATGTTTCCACTTGGGAGGTGAACTCTACTTTTACAGATATCAATGACAAACAAATTTTACGAAAACTATACTTTAAATATTTGGATGTTAAATTAAACGCATTGAAAAATCAAGTAATCACACGTCAGGAACCTGATATGTCTAAAAAGGATGAAATTAAGAATCGAATCCAATCACT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_363464_363905_2:0:0_7:0:0_e	147	chrXV	363706	255	200M	=	363464	-442	ATATTATAATTTTGGCCCTACCCGACTGCAAACTAAACTGCGCGCATAGGCTAAAAAAGGTGCCCTTCGAAGAAAACTATTAGAATGGAGTAACAAGTTCCATATCGAGAAGACAGTAGTCAGAGTTGGGAAATCTAATGTTATAGGTGAAGTTTTACTACTTTAATGTATTCACTCACAACTTTCGACATTATGTAATT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_393534_394063_4:0:0_7:0:0_8	163	chrXV	393534	255	200M	=	393864	530	CAATTTGCTTTTTCTGAGTTTCTCTGTGTATGACAAAACCAATGCACGCGTAGAGTCTTTTTCTTTTACTTTCGGTATCATTCAAGTACAGCGGAATTTCATTCAAGCACACTAATTTCTTCCGAATAGGGCAAAATACCCTTTGGAATTGAAATGCTAAAACTGCAGCTTCATATTCATTAATGTATTTGTCTGGTATC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_393534_394063_4:0:0_7:0:0_8	83	chrXV	393864	255	200M	=	393534	-530	CCATGGTTATGATTTCTTCATTAGTTAAGGATCCCAACGGAAACTTTTTAGGCAGTGTATTAAAATTATCGCGACATATTTCTAAACATTCTCCATAATCATTCAGCTTCGTAATGAGACGTCGACATCCGAAGACGAGGAGGTCAGAATCTTCGGATATTATTACTTGAACAATGTGTTTCTGTTCTAAATATACCATG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_424352_424860_5:0:0_3:1:0_5	163	chrXV	424352	255	200M	=	424661	509	GAATTTCAACTATCGGAGCTGCCACAACTCCTAGGCAACGTCGTTTTCCAGTGGTCCCTGACATATCAATTGCCGCACTGTCACTGTGCGCAAATATAATAGGAAACAGAGGACCGACGGAGACCATATCATTCCGCGGACAAAGAGTCCGAGCGAAGACCGGAAGGAAATATGACGGAGCAAGAATGCTTCCGCGGATG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_424352_424860_5:0:0_3:1:0_5	83	chrXV	424661	255	200M	=	424352	-509	CAAAAAACCTTAAAGGAAACCAAAAGTTTAACTCATTTAATAAGTTGTGACTATATTTCAACACGCGCTCTAATAAATATAGCCTTTCTTTTAGCTTTTCTATAAAACTAGATAAAAATAGTAATTTTTGAGAGTACTTAAGGCTACAGAAGGAGTGAGTAAAAATAAAAAAGAAGCGTGGATGCGCTCACCCTTGTAAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_505758_506223_8:0:0_7:0:0_a	99	chrXV	505758	255	200M	=	506024	466	AAGAAAGGTGAAAGGAAGAAAGATCATCACGAACAACATGTCTGCTCCACAAGCCAAGATTTTGTCTCAAGCTGCCACTGAATTGGAATTACAAGTTGCTCAAGCATTCGTTGAATTGGAAAATTCTTCTCCAGAATTGAAAGCTGAGTTTAGACCTTTGCAATTCCAGTCCATCAGAGAAGTATGTTATTACATTGAAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_505758_506223_8:0:0_7:0:0_a	147	chrXV	506024	255	200M	=	505758	-466	CAATCTAGAAAAGTATAAAAGATAAGGACTTGGACTCAAATGTATTTGGCTGACGATCGCCTGAACCTTGATGCTATGCAAATACAATATCTTCATGAAAAAGCCTACTCCAGTGTTTAAGAAGAAGGGAACGATTTACTAGATCATGCTATACGCAGTATGGTTCTGATAGTTAATTACAATCGGTCCAAGTTCTAAGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrIV_1244113_1244597_3:0:0_3:0:0_7	355	chrXV	575989	255	200M	=	576274	485	AGTTTTGCTAGAAAAGTTGGAAATTGTCTTGAAGGGTGACGAAAAGGACTTGGAAGGTAAGGCCATGTTGAAGGTTGTTATGAGAAAGTTCTTGCCAGCTGCCGATGCCTTATTGGAAATGATTGTCTTGCACTTGCCATCTCCAGACACTGCTCAAGCCTACAGATCTGAACAATTATACGAAGGTCCAGCTGACGATG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:2
+chrIV_1244113_1244597_3:0:0_3:0:0_7	403	chrXV	576274	255	200M	=	575989	-485	TAGATTCTACGCCTTAGGTAGAGTTTTTGCCGGTACTGTTAAGTCCGGTCAAAAGGTCAGAATCCAAGGTCCAAACTACGTTCCAGCTAAGAAGGACGATTTGTTCATCAAGGCCATTCAAAGAGTTGTTTTGATGATGGGTAGATTTGTCGAACCAATCGATGACTGTCCAGCCGGTAAAATTATCGGTTTAGTCGGTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:2
+chrXV_761786_762246_3:1:0_2:0:0_10	163	chrXV	761786	255	200M	=	762047	461	CTCGGTCATGTAGGAGGAGGAAGCGATGTCAGACCCACACCGGAAGGTCTTGAACTTAACGTTCTCGATAATACCCGATTTATCATTCACCTGTATTTGTAGTTTTATCACATCTCCACACGCAGGGGCGCCCACGATTCCTGTGCCGACATTAGCTAAGGACTTAACCATGGACCCAACGTTTCTTGGGTTTGTGTAGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_761786_762246_3:1:0_2:0:0_10	83	chrXV	762047	255	200M	=	761786	-461	AGGATTGAAGTGGGCAGGATTAGCGAGTCTGGCGAACATATATGCTGTGCTATGTTTGTTGGTGATGTATGAGCTGTAATGAAACCTCAGCGTTGTCTACATATGCTTCTTTTGCTGTTGTTATATACTGCTATACTGCTGCACCGGCCGGCCCCAGGTGCTTATTAATAGTAGGTTCCGCATAGGGAAAAAACGAGGGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_874725_875249_4:0:0_4:0:0_9	99	chrXV	874725	255	200M	=	875050	525	GAAAAAGTATGGGTGCGTCAGTTTCTTCCAAATATATACAAATGGTCATCATTTTCATTCCAAAGTATCTTTACCAGGTCAACAAAACCATTATTTTTCGTTTCCAATACGTAGATACCGTACAGGGACAACATGGATCCTCCATAGAGGCAATAAAGGGCGAGCTTATGCCATGTTGGATACTTTCCCTTCGGTATATA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_874725_875249_4:0:0_4:0:0_9	147	chrXV	875050	255	200M	=	874725	-525	GAATCAAAGTATATTTTGCTATTCTCTCATAGTCTTTTTGATAAGAGTCCTTAAATTGAGAGAACTCTGGGGGCTTAAACATCTCCACTGAAGAGGATGCCTCTTTTGACGTATTTGCAATATCGTTTAGTTTATTTTCAGCATTTAAACGATTAATGCTATAAAAGGATCTGTTCGTTGAAAGTACTAATCCTGGAAAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_966647_967179_2:0:0_6:0:0_2	163	chrXV	966647	255	200M	=	966980	533	CTTCTTCTTCGTGAAACTAATCGCAGCGAGCCCTTTTAGGTCTCTCTGTTGAGCAGAAGGGGTTTTGTCTCTGTTGTGGTAGCTTTGATCGCATGATATTCTGGTGGTCACGTCTTCTTTGTTTTCTTTCCACTTTCGATATTGGGGACGCAAAGGAGGTAAGTTTGCGACCCTTTTGCGAACCTAGGCCCCAATACATT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_966647_967179_2:0:0_6:0:0_2	83	chrXV	966980	255	200M	=	966647	-533	GTTCTTTCAATACGGTAGACATCAGTAAACTTATCAAATTTTAATCGGTGCTGCCGTTTTCTGTGAGAACAAGTATGTTACTATTCGTATTCCCGCCTTGAGCGATAGAGTATTTGAAAATTGTAATTAGGTCGTTGAAGACTTGAAACTTCGCTTCGTTGGTAACTTCGAATATATTTGTACGCGAGTATTCTGACTTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_993147_993632_7:0:0_2:0:0_1	99	chrXV	993147	255	200M	=	993433	486	ACGTCATCTGTTATCTGCCAAACTCAATCGGTTTTTTCTTGTCTATCAATTTCTAAGCTGGATAGCCATTCAGAAATTGCATCTCCGATTTGTATTGGCACCCTCCACGAAAACTTATCACTAAACTTATCGAAAAGAAAAAATTTGTGACTTTGTGTAACCAACAAATTATAGAAAGCAAAAAATAAAAAATCAGAATC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_993147_993632_7:0:0_2:0:0_1	147	chrXV	993433	255	200M	=	993147	-486	CCAGTAGAGTAAGTTTGGTAGAAATATCTTGAGAGGCGCCATGAAAGAGGCAATGAAAAGTGGAATTTTCTTTGTTTCCAACTATATTATCTGTGAGTAATAATGGCTGCCATAAATTTGTTTCGTATACTATGTGCTCGACCAATGAAAGCATAAAATCGTAATCCTTGCGCACAGATAAGTGACACAGTAGCATATCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_1055613_1056076_5:1:0_8:0:0_b	163	chrXV	1055613	255	200M	=	1055877	464	AGACAAAAATGTACGGCAAGTTACCACTGGTTTTTACAGATGCCTGCATGGGAGTTCTCGGCGAAGTAACCTGTGAGTATAGTAGTGACGCTTTATATTCCTCACCAGCATGTACATGTGAACCGGGATTACAGTCAATGTTGTATTGTATTTACGAATCATTGACTGAAAAGGGTTATTCCAATAGAACCTTTGAAAAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_1055613_1056076_5:1:0_8:0:0_b	83	chrXV	1055877	255	200M	=	1055613	-464	CAGATTTCTATATTATGCTGAATAATGGAACAACATACATAATACAGTATTCTGAAGGTAGCGCGAATCTTACGTATCCAATCGAGATGGATGCCCAAGTGAGAGATAACTAGTATTATTCTTACCATCGTTTCTACGCCAACTACGACATTGGTCATACTTTTGCTGGTATGATTTGCGCCTATTTGGTAGGTGTTATG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_1059149_1059680_2:0:0_1:0:0_11	163	chrXV	1059149	255	200M	=	1059481	532	CAAACAAAAACACCCAAAATTACATTACTTAGAATGACCCTCAAGAGCAGGGTGCAATTTATCAAGCGATCATTGAACTAACTAAGTTCATATCCTGTATAGGCTTTAAAACAATGCACCCTAAGTTCAAATGCACCCCCCCTCGCCCCGCAGCGGACCCTTGAACAGAGAACTGTTTCGAGGTTCACCCAATTGGATCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_1059215_1059682_4:0:0_3:0:0_c	163	chrXV	1059215	255	200M	=	1059483	468	CGATCATAGAACTAACTAAGTTCATATCCTGTATAGGATTTAAAACAATGCACCGTAAGTTCAAATGCACCCCCCCTCGGCCCGCAGCGGACCCTTGAACAGAGAACTGTTTCGAGGTTCACCCAATTGGATCACTTGTATAATTTGTAATCGAGTTCGGATAAGATGTATACGAATCTAACTGTGTGCAGTATAATTAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_1059149_1059680_2:0:0_1:0:0_11	83	chrXV	1059481	255	200M	=	1059149	-532	CGGTCCTTGTAAAAAAGTCTATCATAAAGCCATCACAAAACAATAATAATGAAATTCTCAACTATTTTCGGAGCTACTACAGTTATGACTGCCGTCTCGGCAGCAGCTGTGTCGAGTGTAATGACCACTAAGACTATTACTGCTACTAACGGTAATAACGTTTACACTAAGGTCGTTACCGACACCGCTGACCCTATAAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXV_1059215_1059682_4:0:0_3:0:0_c	83	chrXV	1059483	255	200M	=	1059215	-468	CTCCTTGGAAAAAAGTCTATCATAAAGCCATCACAAAACAATAATAATGAAATTCTCAACTATTTTCGGAGCTACTACAGTTATGACTGCCGTCTCGCCAGCAGCTGTGTCGAGTGTAATGACCACTAAGACTATTACTGCTACTAACGGTAATAACGTTTACACTAAGGTCGTTACCGACACCGCTGACCCTATCATTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrV_573344_573800_1:0:0_1:0:0_1	355	chrXVI	3000	255	200M	=	3257	457	TGCTAGCAAGATCATCGTAGATCCCCACGTATAAATCAGTAACGCCATCGCAACCTTCTTCAATAAAGTTTCTTACAGGGGCCACATTCAATCAACCGCATCGGCTCAACCTGATCATGCAATTAGCAAGCAACACTGTGTACGGTACAAACAGAAACGACACATATTTCACGTCGCCCTTAGACGCCAGTGCTATCAAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:6
+chrV_573344_573800_1:0:0_1:0:0_1	403	chrXVI	3257	255	200M	=	3000	-457	GGTGTGTCTGCCATGTATATTTCATGACATAAGCGCAACTGATGCAAGTCCCTGAATTCAAAGGAGCTGCCAAAGAGTTTCTGGCCTGCGACGAGGATATCGTTTGTACTCTTGGGCTCTCGGGGCCTTTTTCGCGTTACTCTGGAAATTTTTTGATGATGATCTGAACTCGCCGCCTCACCTGCCACTACGTCTTCCGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:6
+chrXVI_47666_48026_6:0:0_6:1:0_f	163	chrXVI	47666	255	200M	=	47827	361	CTAGACGACCACATTCCATTGGTTGTTATGCAAACGGGTTCCGGTACCCAGTCTAACATGAATGGTAATGAAGTTCTTTCCAATCGTGCCATTGAGATCCTAGGAGGCAAGCTTGGATCTAAACAAGTCCATCCAAACAATCATTGCAACCAATCTCAATCATCCAATGATACTTTCCCCACTGTCATGCATATCGCTGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_47666_48026_6:0:0_6:1:0_f	83	chrXVI	47827	255	200M	=	47666	-361	ATCCAATGATACTTTCCCCACTGTCATGCATATCGCTGCCAGTTTGAAAATTCAAAACGAGTTGATACCTGAGTTGACCAATTTAAAGAACGCCCTTGAAGCCAATTCCAAGCAATTTGACCATATTGTGATGATCGGTACAACACTCTTGCAAGATGCCACGCCTTTGACACTAGGCCAAGAGTTTTCCGGTTACGTGC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_174529_175059_1:1:0_2:0:0_2	163	chrXVI	174529	255	200M	=	174860	531	TCATCACTGTTGGTGCACACTTCAAGCAAGCTAACAACTTTTTGTGGCCATTCAAGTTGTCCAACCCATCTGGTGGTTGGGGTGTCCCAAGAAAGTTCAAGCATTTCCTCCAAGGTGGTTCTTTCGGTAACCGTGAAGAATTCATCAATAAATTGGTTAAGGCTATGAACTAACATTATTCCGTGTGGCAATAATCTCAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_174529_175059_1:1:0_2:0:0_2	83	chrXVI	174860	255	200M	=	174529	-531	CACATAGGAGTATCCCTGTAGTTAGTTCCGCGCGGTTCGATCACGGATATACTTTCAACAATGGCAGTATGAAAGCCTGTTTGAAAAAAGAAGGAAACAATAAACGAAGTGCTTTTTTGCCTCCTAAATTATTCAATTTGACAACTGATTTCCAGCCATTCATTATTCAGTGAGGAGCGACAATGTTTGGAGTCAAGGAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_216257_216697_2:0:0_4:0:0_8	99	chrXVI	216257	255	200M	=	216498	441	TTGGGTAACGCCTATTAGGGAAAGTAGGTAGTTCCATGACCAACGATTAATGGCAATGATAGTGGGTTCTATATATGTACCGGCTCCATACATCATCTCTGTCCATTCGCTTTTCCATTTTTCGAACTGCAGTTTAGTGTTTTCCCACAATGTTGTGCCCAAAAAGACTTCGTCAAAGTTTACCGTATCAGGACATTCTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_216257_216697_2:0:0_4:0:0_8	147	chrXVI	216498	255	200M	=	216257	-441	TTCGATATGCTGAATGGGATGAATGGATCGTCAATGAGATCGAGTGATTTTTCGACAAGATATAGCATTATCTCAGAAAGTACCTCTCCCTTCTTTTTGTCTCTTAGTTTATCTTTGATGAAATCGAATTTGTCTTCTACTGTGTAGATCGGATGTTCTCTAGTCATCACTCCTCGAGATGAAATGATCGCAACTGGAAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_286197_286773_3:0:0_1:0:0_3	163	chrXVI	286197	255	200M	=	286574	577	AATTCTCGCAAACACGTCACAAGAAACACATTAATGCAAAATGTGGCACAGTCAAAAAACTGCGAAAATGTGTAAAAGATGAAAAGAACCGTGATCAGCACCAGCAGTGTACCAGATTTTGTGATCTGATTTATTATAGATTTACTCGATGACCTGAACTTGAATTATATTTAAATCGATGAAGGGGTTGAAACAGGTGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_286197_286773_3:0:0_1:0:0_3	83	chrXVI	286574	255	200M	=	286197	-577	GTTCCTGAAATGATATACTTTATGGATAGACATTATCTGTTCATTGAGTATACAGTAGGGGCTAAACCTTCTTTTAAGGGAGTAAAAAAGATGGATATGCATTACGTCGGCCACATGACATTAATTGTGCAGGTTCAGCTGTTGTATAGGCTGAAGAGGCTACGCTTGCTAATTTATAATGCCATTTACTAACCTAAGGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_289557_289973_4:0:0_3:0:0_d	163	chrXVI	289557	255	200M	=	289774	417	AACATTAAAAACAAATTTTTAGAAAAACAAAAGCTGAATTAAAGACTAAATATTACACAATTTCTTCATACATTTCCGCCCCAAAGTCAAACAGCCTAAATAATATAAAAATTAACTTTTGGCAGCTCCAACCTCTGTACTGCCATCTAAAACTTTTCCAGTAAACGGCTTATATACAGTTAACAACCCGTCACTATCAA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_289557_289973_4:0:0_3:0:0_d	83	chrXVI	289774	255	200M	=	289557	-417	TCAATGTATTTGTGATAAGCAACGGTATTAAACTTATTATTTTCTCCTATTGCTCTTCTGCAGCCCTCAGTGTGATAAAATGCCTTGCTTTCGGCCTCCAATTCGTCAGATATTATGCCTTGAAAGTCCTCATGTATCTCGTTATAAATGGCAAAAACAGGTTCGAAATTCCAGTGGTAAACATTACCTAACCCTCCAAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_389175_389686_2:0:0_4:0:0_6	99	chrXVI	389175	255	200M	=	389487	512	GCAATCTCCCGTTAATTATGCTTTCCCTAACCCATACAAAATTCAACAACTACAACAGGCTCCTATCCAATCAGGTATGCCTTTACCAAATACCAACATACCTCCCCCAGCATTAAAAGTGGAAACCACCGTTACTGCTCCTCCAATTCGGGCAAGAGGGGTCAGCAATGCCTGCGTGGGAAGTTCAGCGTCTTTTGGTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_389175_389686_2:0:0_4:0:0_6	147	chrXVI	389487	255	200M	=	389175	-512	AGTTCAGCAGAAGCAATATCCATCAGTTGTGCAAAACCTTGCCGCTTCGGCCGTAAATACCCCCAATTTTGTAAAGACCCATAGAGGCCATACAAGCTCTATTAGTTCGTATACACCAAACCAGAATGAACACGCCTCTAGATACGCACCCAACTATCAACAATCTTATCAGGTGCAATATACCTCACAACCGGTTGGTA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_401813_402387_4:0:0_6:0:0_1	99	chrXVI	401813	255	200M	=	402188	575	AGTTGAGAATGGCAGCTCTAAACAACGAACCAGAACGTTTGTGAAGAAGGATTGAAGCGTGTAATCTTGAAACATTGACAATGTCCAAGCAAATGCCTTTGCTCCCATTATTCTAGTGTTCACTATTACGTCCAATCCTAGCAAAGTAATATCTCCATCAATCATAGGTGCATCGATATTGATATGTTCATTATTTTTTG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_401813_402387_4:0:0_6:0:0_1	147	chrXVI	402188	255	200M	=	401813	-575	AACATGATCTAAAGTTTTTTAGGTATGCTTAACTTTATAATGCTCCAATAACGCAACATAAACATCTAAAGACAGTTCCAATAGTTCCGGGTTTTGCTCCAGTAAAATATTCTGAAAAACTAGACGGAATACCTTGCCGTTTAACCAGTTTTTAGTAGAATCATCCTTTATTGATAAGAATGCTATCAGTAGAGTCAATA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_680224_680728_0:0:0_3:0:0_7	99	chrXVI	680224	255	200M	=	680529	505	GGACTACCTTTGACGCATGATAAGACGGCAAGAGACCTACCACAGCTGTCATCTCAACTAAATTCTATTCCATATTACTCAGCTCCACACGACCCTTCAACGAGACATCATTACCTCAACGTCGCTCAAGCTCAACCAAGGGCTAACTCGACCCCTCAATTGCCCTTTATTTCATCCATTATCAACAACAGCAGTCAAAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_680224_680728_0:0:0_3:0:0_7	147	chrXVI	680529	255	200M	=	680224	-505	TATCAACAATTCAAATCAATATTTTCCTCCCCCTCTATTACCTTCTCTGCAAGATTTTCAACTGGATCAGTACCAGCAGCTAAAGCAGATGGGAACAACTTATATTGTCAAACCACTGTCTCACACCAGGAACAATCGATTGTCCACAACTACCCCTACGCATCATCACATTCCTCATATACCAAACCAAAACATTCCTC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_693308_693805_2:0:0_2:0:0_c	99	chrXVI	693308	255	200M	=	693606	498	GGGCAGCAACTTCGTTACCATCAGCTGGTCTCCAAACTTGAATGTTTGGTAGGGATCTGAAGTGTGCTAAAGTTTCAATAGGTTGATGTGTTGGACCATCTTCACCGACACCGATAGAGTCATGTGTAGCAACCCAAATAACTGGGTGGCCAGACAAAGCGGACAATCTAACGGCACCAGCAGCATAAGAAACGAAGTTC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_693308_693805_2:0:0_2:0:0_c	147	chrXVI	693606	255	200M	=	693308	-498	TCTACCAGAGTAGTTACCTGAACCGGAAGAAGGAGGTTGGTAGTCAAGGCCTTCCTTCCATCTGGTCAAGTTAGAAGGTGTTAAATCGGCAGAACCACCAATCAACTCTGGCAATTGATTGTAAACATCCTCAAGAACAGTTTCTGATAATTTTCTAGTGGCCACGGCAGAGTCCTTGGCGGTGTAAGTTGGCAACTTAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_752128_752641_3:0:0_2:0:0_5	163	chrXVI	752128	255	200M	=	752442	514	TCTCGAGTATTTTTCACTTTTAGTATATAAGTAAAACATAAAAAACATGAGAGGTGGTATGGTTTATTTGCCGTCACTGTGGAGCCTTCAAGTAATGTAAATAAGAGGGAAAGTGTGATAGTACAAGATGAGTTCGAATTCAACACCAGAAAATGTTACTGCAGCACACGTTCTGTGGTATATTCCCAATAAGATCGGTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_752128_752641_3:0:0_2:0:0_5	83	chrXVI	752442	255	200M	=	752128	-514	CAAGAAAGTACAATAAGGTTTCCAGTCTGGGTGCCGTTCTGGACATGGTTACCGACAGATCCAGTACCGCTGGCTTGATGTGTTTCCTTTGTGTGCAGTATCCCCAATGGTGCGTTTTCTTCCAATTAATGCTGGGCTTGGATATTACTAGTCACTACATGCATATGTATCCCAGTTTAAGTGCTGGTAAGACTTCTCAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_763341_763881_3:0:0_5:0:0_4	163	chrXVI	763341	255	200M	=	763682	541	AAGCTGCCAGCACCATGCGCGCTTCATACTGTTTATGTTCCTTTTGTCAGCTCTGCCCAAAGAAGCCCCTATAATTACGCCAATACAATATATGGTTTGCACATCATTCGTACAATTAATTCAGTCAAAACATATTTCAATATTAGGTCAATGGTTACATCTTCTTCATCTGCCAGAATAACATGGGGGAAATCTCTGCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_763341_763881_3:0:0_5:0:0_4	83	chrXVI	763682	255	200M	=	763341	-541	GATCCACTTAAATATTAATGGTTCACATGATCCTTATAAGATTACAGATGATGGTGCGGGTCTGGCGTTCTGCTGGTCTGGTGGCACCACAATTTACGTTCATAACTCCACGGATCCTAAAGAGTTTTTAAAAAGTGAATCCCAAAGGTTTCAGTTGGCAGTCCCAGACTTTGCCAAAGTTAGTATATTTGATTAAGTCT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_766516_767017_5:0:0_7:0:0_b	163	chrXVI	766516	255	200M	=	766818	502	TTACTTCCTTACAATGTTTCAACCAGCAAGAAAATCCCGTTTACCCTGAATTGCTGGCCCCCTTTTATGAAAATTCATCCTATAATAAGAACGCGCCAATGGTAGAAATATTTTGGATCCTGGGGCCATCAGTTGGAGGTATTTCAGATCTGGAAGATTTGATTGTTTCTCTACATCCATTGATTTTCAAGATGGATCAC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_766516_767017_5:0:0_7:0:0_b	83	chrXVI	766818	255	200M	=	766516	-502	TTCTTTTCATCGTCTCCACTGTTACGGCACAGTCTTTATAACGGTTCTTTATCTGTGTACGATGCGAAAGACGTTGACTCTTGGGTCTTGCGTAGTATCCAGAGCAAAGAAGGTATCAAAAAGCATAAGGCTGATAATAGAAAATTGTCAGCATCACTTGTTGTGCAACCTGATTATAACATCAATGAAATGGTCAAAAG	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_866925_867424_2:1:0_4:0:0_e	99	chrXVI	866925	255	200M	=	867225	500	ACGTTCTTGACGTCCTTTTTCAACCATAGTTTGATAGTATTGTCGATAGAAAAAGTACTTTGACCTGTTCCCACATTTGTAGTAGGAGCCACGGTGGTAATTCTGGAGTTGATAGCTTTAATCATCTTTTCATACTCTGCATAAGCTAAATTAAAATTAAAATATGCGTCTTTCGCCCTTAAGGCAACCCTAGCGGCTGA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_866925_867424_2:1:0_4:0:0_e	147	chrXVI	867225	255	200M	=	866925	-500	TTTATGGCAGTGCACAGTGAACCAAAATTTTTGGATGTCGCTACTAATGGAATTATGCTATTTTTCAATGTAGGTAATGACCTAAAGGTTTCGAAATTCATCCTAATATGTCTAGTCAAATTAGATCGAGGGTCGGATAGTTCTTTTTCCAACGTTTCATTCCATTGGGAAACCCAGGGGGAGATTTCAGAGCGAACTGT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_889501_889988_11:0:0_5:0:0_0	99	chrXVI	889501	255	200M	=	889789	488	CAACAAAGATTCTCATACAATCCGCACAAAATGCAATTTATTTACGTCCCCAATACAAAGCCGAATGGGCTAGGAGGCAATGCGGGTTTTCTAGCAGATATAGAGGACAAAGTTCAAATGTTCTTGACACGATATTACCTCACGAACGACAGAGTCAAGAGAAATGAAAACTACCAAAACAGTGACATGTATACTCCATA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_889501_889988_11:0:0_5:0:0_0	147	chrXVI	889789	255	200M	=	889501	-488	CTACTAGGTAGGGATGCTCAAAACTTTCTACTATTGGGGCTCTTAAATAAGAACTTTAAGGGCAATTGGTCACTGGAAGATCCGTCTGGATCTGTCGAAATTGACATTTCCCAAACTATCCCTACACAACGACATTACTACGTCCCAGGTTGCATGGTTCTTGTGGAAGGAATATACTATTCTGGACGAAATAAATTCCA	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_908795_909263_5:0:0_2:0:0_a	99	chrXVI	908795	255	200M	=	909064	469	AGAGGCAGATCAGATTGGCACTCACCCTTGCCATCAATATCCCCTTCGATGCATTATGGATCGTTGAACTCGAGAATGTCTCAAGGCGCCAATGCAAGCCATTTGATTGCAAGAGGCGGTGGGAATTCATCTACTAGTGCCTTGAATAGTAGAAGGAATTCTTTAGATAAGAGCTCAAACAAGCAGGGTATGTCATGCTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_908795_909263_5:0:0_2:0:0_a	147	chrXVI	909064	255	200M	=	908795	-469	AGGAGTAGAAGAAGATGATGATGACGAGAATGACCGTTTGCTCAACCAAATGGGAAACAGTCCTACAAAATTCAAAAGTTCAATATCTCCAAGATCAATTGATAGCATTTCAAGTTCTTTCATAAAAAGTAGGATACCTATCAGACAACCATACCATTACTCTAAACCAACTACTGCGCCCTTTCAAGCTCAGGCGAAAT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_912895_913350_7:0:0_5:0:0_9	163	chrXVI	912895	255	200M	=	913151	456	ATAACCATTTAGCGTGGAAAGGACTTTTTCTCTTATTTAGAACCACTGAGGTTGTCCCAGACATACTTTCGTATGATGAATATTTTGACCTGTGTGGCCAATATGCAGACGCACTTTAAAAGCCGGAACAGTCTCAAGTAGAACTAATAAATGACAAAAAATTACTACAGCAAACGCATCCATATTGTCAAAAAGCCTTT	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
+chrXVI_912895_913350_7:0:0_5:0:0_9	83	chrXVI	913151	255	200M	=	912895	-456	TACACCCCAGGACGCGTTATGAAATCTTATAAAGATACGGTCTAATATTGAAACAACGGAAATAGGTAAGACCCTTAGTCAGAACAGGTTAAAACTAAAACCTAGTGATCCTCATTATCAAATTAAACTAAATTCATTCTCCTGGGAAATAATTAAAAATTCAGAAATTGATCAGTTATACAACCAGTTGGTAAATATTC	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222	NH:i:1
Binary file samtools_fastx/test-data/samtools_fastx-out1-1.fasta.gz has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/samtools_fastx-out1-2.fasta	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,400 @@
+>chrM_101_581_3:0:0_1:0:0_45
+GAGGTAAAATTACACATGCAAACCTCCATAGACCGGAGAAAAATCCCTTAAAGATTTACTTAAAATTTAA
+>chrM_317_794_1:3:0_0:1:0_18
+CTCGGTCATACGATTAACCCAAACTAAATATTTTCGGCGTAAAACGTGTCATCTATAAATAAATAAATAG
+>chrM_424_929_1:0:1_1:1:0_4a
+GGACCTAAACCGTCAATAACGAAAGTAATTCTAGTCATTTATAATCCACGACAGCTAAGACCCAAACTGG
+>chrM_296_703_3:1:0_0:1:0_b
+GGGTTTGCTGAAGATGGCGGTATATAGGCTGAATTAGCAAGTGATGGTGAGGTAGAGCGGGGTTTATCGA
+>chrM_271_788_1:2:0_0:1:0_73
+TAGCCCATTTCTTCCCATTGCATTGGCTACACCTTGACCTAACGTTTTTATGTTTGATTCTTTTGCTTAC
+>chrM_1166_1638_1:0:0_3:1:0_54
+AGAATTGGAGAAAGAAATTCGTACATCTAGGAGCTATAGAACTAGTACCGCAAGGGAAAGATGAAAGACT
+>chrM_1187_1670_2:0:0_1:1:0_5
+TACATCTAGGAGCTATAGAACTAGAACCGCAAGGGAAAGATGAAAGCCTAATTAAAAGTAAGAACAAGCA
+>chrM_826_1305_2:0:0_0:0:0_63
+AGAAGTTTTCTAGTTAGTTCATTATGCAAAAGGTACAAGGTTTAATCTTTGCTTGTTCTTACTTTTAATT
+>chrM_769_1311_4:2:0_1:0:0_9b
+CAAAGGGAAGACATGGGGTACATTTTCTTATAACAGAACATTACTATCCCCTTTATGAAACTAAAGGACT
+>chrM_946_1374_2:0:1_1:0:0_b7
+GTTGATTCATAAAATTGTTTTTAGGTAGGTCGTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTA
+>chrM_1461_2059_1:2:0_0:0:0_8f
+GAATTTAAGTTCAATTATAAACTTGCTGAAAAAAGAACAAAATCAAAAAGTAAGTTTAGATTATAGCCAA
+>chrM_1366_1837_1:0:0_0:0:0_24
+ATTTATAGTGTGATTATTGCCTATAGTCTGATTAACTAACAATGGTTATCCGAGTTGTTATACGCGTATG
+>chrM_1396_1891_4:1:0_3:0:0_55
+GAGAAGATTTTTAGGTAGAGGTGAAACGCCTACCGAGCTTGTTGATAGCTTGTTACCCAAAAAGTGAATT
+>chrM_1654_2097_0:1:0_1:0:0_a8
+AGAGACAGTTGGACCCTCGTTTAGCCGTTCATGCTAGTCCCTAATTAAGGACCAAGTGATTATGCTACCT
+>chrM_2195_2667_1:0:0_2:0:0_95
+TTTAATTTATTAAACCTAATGGCCCAAAAACTATAGTCTAAGTTTGAAATTTCGGTTGGGGTGACCTCGG
+>chrM_1772_2275_1:0:0_1:0:0_3f
+ATTTTTATTCTCCGAGGTCACCCCAACCGAAATTTCAAACTTATACTATAGTTTTTGGGCCATTAGGTTT
+>chrM_2021_2595_3:0:0_2:0:0_22
+AAGGTGGCTCTATTTCTCTTGACCTTTCGTACTGGGAGAAATCGTAAATAGATAGAAACCGACCAGGATT
+>chrM_2706_3137_0:1:0_1:0:1_af
+AGACTTAAAACCTTGTTCCCAGAGGTTCAAATCCTCTCCCTAATAGTGTTCTTTATTATTATCCTAACAC
+>chrM_2789_3314_1:0:0_0:1:0_f
+TCTAATCGCCATAGCCTTCCTCACATTAGTAGAACGCAAAATCTTAGGGTACATACAACTACGAAAAGGC
+>chrM_2674_3159_3:1:0_1:1:1_e
+CTACGGCTCGTAAAGCTCCGATTAGTGAGAATTTGGAGTTTGAGGCTCATCCTGATCAAGAATGGAGTAA
+>chrM_3103_3621_2:1:0_1:0:0_71
+GATCAGGATGATCCTCAAACTCCAAATCCTCACTAATCGGAGCTTTACGAGCCGTAGCCCAAACAATTTC
+>chrM_3169_3659_1:2:0_2:0:0_68
+TTTCATATGATGTAACCATAGCTATTATCCTTTTAACAGTTCTATTAATAAATGGATTCTACTCTCTACA
+>chrM_2740_3253_1:1:0_1:1:0_6c
+GTTGTAATAAGTGTTTTTAGAGAGTAGAATCCATTTATTAATAGAACTGATAAAAGGATAATAGCTATGG
+>chrM_3187_3702_2:1:0_1:1:0_8d
+TAGCTATTCTCCTTTTATCAGTTCTATTAATAAATGGATTCTACTCTCTACAAACACTTATTACAACCGA
+>chrM_3204_3728_0:1:0_2:2:0_4b
+TCAGTTCTATTAATAAATGGATTCTACTCTCTACAAACACTTATTACAACCCAAGAACACATATGATTAC
+>chrM_2945_3338_1:0:0_1:1:0_19
+GGCCCGGTTTGTTTCTGCTAGGGTTGAGATATATCATATTATGGCTATGGGTCAGGCTGGCAGACGTAAT
+>chrM_3289_3819_1:1:0_4:1:0_3c
+CCAAAGCCATAATATGATATATCTCAACCCTAGCAGAAACAAACCGGGCCCCCTTCGACCTGACAGAAGG
+>chrM_3504_4052_0:0:0_0:2:0_b9
+CCAGAACTCTACTCAACTAACTTCATAATAGAAGCTCTACTACTATCATCAACATTCCTATGGATCCGAG
+>chrM_3542_4113_1:0:0_0:0:0_65
+ACTACTATCATCAACATTCCTATGGATCCGAGCATCTTATCGACGCTTCCGTTACGATCAACTTATACAT
+>chrM_3560_4153_2:0:0_1:0:0_4f
+CCTATGGATCCGAGCATCTTATGCACGCTTCCGTTACGATCAACTTATACATCTTCTATGAAAAAACATT
+>chrM_3562_4117_0:0:0_3:0:0_51
+TATGGATCCGAGCATCTTATCCACGCTTCCGTTACGATCAACTTATACATCTTCTATGAAAAAACTTTCT
+>chrM_3135_3669_1:2:0_1:0:0_2c
+AAGAAATATGTCACATACATAATGCTAGAGTTAGGGGTAGAAAGTTTTTTCATAGAAGATGTATAAGTTG
+>chrM_3422_3872_1:0:0_2:1:0_3b
+CCCTATAGCTTAATTAGCTGACCTTAGTATTAGGATAAGGTGTTTAGGTAGCAAGGAGAATTTTGAATTC
+>chrM_3587_4003_0:0:0_1:1:0_a7
+TCATATCAGTATTAGGTTGGTGCTGGATATTGTGATTACAGGACCTAATAAGATTGTGAAGTAGATGATG
+>chrM_3998_4489_2:1:0_1:1:0_be
+ATATGAGAAGGCCTGGAATTCCGCCAACTAGCAATTATCCCCATACTAATCAACAAAAAAAACCCACGAT
+>chrM_4007_4449_2:0:0_3:1:0_17
+GTCCTGGAATTCAGCCTACTAGCACTTATCCCCATACTAATCAACAAAAAAAACCCACGATCAACTGAAG
+>chrM_4139_4621_1:0:0_4:0:0_7e
+CTCAACTATAAACAACTAGGAACATGAATATTTCAACAACAAACAAACTGTCTTATCCTTAACATAACAT
+>chrM_4200_4733_4:0:0_0:1:0_6f
+ACATCAGATTAATAGCCCTAACCATAAAACTAGGCCTCGCCCCATTCCACTACTGATTACCAGAAGTAAC
+>chrM_3799_4278_3:2:0_1:0:0_1d
+TTAAGAATTCAAAATTCTGCTAGCTACCAAAACACCTTATCCTGATAGTAAGGTCAGCTAATTAAGCTAT
+>chrM_4256_4777_1:0:0_2:2:0_66
+TTACCAGAAGTAACTCAAGGGATCCCACTGCACATAGGACTTATTCTTGTTACATGACAAAAAATTGCTC
+>chrM_3889_4361_3:0:0_3:0:0_33
+TGAGTAGCGGGTAAATTTGACTTAAAATTGAAAGGGGCGCAATTTTTTGTCATGTAAGAAGAATAAGTCC
+>chrM_3912_4414_3:0:0_2:1:0_91
+TCATGCCCCAATGAAAATAGAAGTAAATGCTAGTATTAAAATGATAGTAGAGTTGAGTATCGGGTAAATT
+>chrM_3945_4422_1:2:0_0:1:0_64
+AGTCCTCCTCATGCCCCAATGAAAATAGAAGTAATTGCTAGTATTAAAATGATAGTAGAGTTGAGTAGCG
+>chrM_4354_4860_0:1:0_1:0:1_b1
+GCTACTCAACTCTACTATCATTTTAATACTAGCAATTACTTCTATTTTCATAGGGGCATGAGGAGGATTT
+>chrM_4383_4859_1:1:0_0:0:1_90
+TAGCAATTACTTCTATTTTCATAGGGGCATTAGGAGGATTTAACCAAACACAAATACGAAAAATTATAGC
+>chrM_4425_4987_2:0:0_2:3:0_35
+GCTTTGATTGCTCGCGGACTGGTAAATCCTAACCTTCTAGGTAATTAGTTGGGGGGCTAGGGGTAGGGTT
+>chrM_4427_4991_1:0:0_3:3:0_7
+CAAACACAAATACGAAAAATTATAGCCTATTCATCAATTGCCCACCTAGGATGAATATTAGCAATTCTTC
+>chrM_4480_4986_1:1:0_2:3:0_98
+AAAATTAGCAATTCTTCCTTACAACCCATCCCTCACTCTACTCAACCTCATAATGTATATTATTCTTACA
+>chrM_4491_4937_1:0:0_1:1:0_5e
+TTCTTCCTTACAACCCATCCCTCACTCAACTCAACCTCATAATCTATATTATTCTTACAGCCCCTATATT
+>chrM_4079_4594_1:0:0_3:0:0_28
+GATGGTTATAGCGTTATTTAGTATAAGTGCTATGAATCTAGGGGCTGTAAGAATCATATAGATTATGAGG
+>chrM_4140_4598_2:0:0_2:0:0_12
+AGATGATGGTTATAGAGTTATTTAGTATAAGTGCTATGAATAAAGGGGCTGTAAGAATAATATAGATTAT
+>chrM_4627_5166_2:0:0_2:1:0_13
+AGCAATACTACCTATAATCTCAGTGATATTACTATCCCTAGGAGGCCTTCCACCACTAACAGGATTCTTA
+>chrM_4810_5337_0:1:0_0:3:0_9c
+CACTTCACTAACAATATTTCCAACCAACAATAACTCAAAAATAATAACTCACCAAACAAAAACTAAACCT
+>chrM_4306_4893_3:0:0_3:1:0_83
+GAAAATATTAGGTTATGTTTAGTTTTTGTTTGGTGAGTTATTAATTTTGAGTTATTGTTGGTTGGCAATA
+>chrM_4842_5304_1:1:0_0:2:0_41
+CCTCAAAAATAATAACTCACCAAACAAAAACTAAACCTAACCTAATATTTTCCACCCTAGCTATCATAAG
+>chrM_4484_4978_1:2:0_1:2:0_3d
+GCTCGCGGACTGGTATATCCTAACCTTCTAGGTAATTAGTTGGGGGGCTCGGGGTAGGGTTATTGTGCTT
+>chrM_4918_5435_0:2:0_1:1:0_74
+TAAAATACTTAGTGCAGTACCCACTATTCCCGCTCAGGCTCCGAATAGTAGAAAGAGGGTTCGGATATCT
+>chrM_5540_5928_2:2:0_1:0:0_2d
+ACCAATAATAATTGGTGGCTTTGGCAACTGACTTGTCCCACTAATAATCGTAGCCCCAGATATAGCATTC
+>chrM_5583_6032_2:0:0_3:1:0_2b
+ATACTCGGAGCCCCAGATATAGCATTCCCACGAATAAATAATATAAGTTTTTGAGTCCTACCACCATCAT
+>chrM_5645_6067_1:2:0_1:3:0_1c
+ACCATCATTTCTCCTTCTCCTAGCATCATCAATAGTAGAGGCAGGAGTAGGAACATGATGAACAGTCTAC
+>chrM_5770_6257_3:0:0_1:2:0_46
+TCTCCCTTCATTTAGCAGGAGTGTCATCTATTTTAGGTGCAATTACTTTTATTACCACTATTCTCAACAT
+>chrM_5340_5854_0:1:0_0:0:0_a
+ATGGCTGGGGGTTTCATGTTGATAATAGTGGTAATAAAATTAATTGCACCTAAAATAGATGACACTCCAG
+>chrM_5499_5905_2:3:0_1:0:0_2f
+ACGGGTGTAATAAGTACGGATCAGACAAATAGTGGAGTTTGATACTGTGTTATGGCTGGGGGTTTCATGT
+>chrM_5451_5933_2:1:0_1:1:0_57
+TAACACTTGTAGTGATAATAGGAGCAGTACGGCTGTAATAAGTACGGATCAGACAAATAGTGGAGTTTGA
+>chrM_5403_5984_0:0:0_1:2:0_ab
+GAAAGTTTTGTTTAGGTTGCGGTGTGTTAGTAGTATAGTAATGCCTGCGGCTAACACTGGTAGTGATAAT
+>chrM_5930_6421_2:3:0_1:1:0_2e
+GTTAGCCGCAGGCATTACTATACTACTACCAGACCGCAACCTAAACACAACTTTCTTTGATCCCGCGGGA
+>chrM_5615_6110_2:1:0_0:3:0_14
+GTAGTAAGTAACTACATGTGAAATAATTCCAAATCCTGGGAGGATAAGAAAAAAAACTTCTGGGTGCCCC
+>chrM_6074_6685_2:0:0_0:2:0_a3
+AGGATTTGGAATTATTTCACATGTAGTTACTTACTACTCCGGCAACAAAGAACCTTTCGGCTATATAGGA
+>chrM_5831_6292_0:0:0_1:0:0_15
+CTAAATACTTTGACACCGGTAGGACTTGCGATAATTATAGTGGCTGATGTAAAGTAAGCTCGTGTGTCTA
+>chrM_6228_6791_1:0:0_0:0:0_ae
+ACACGAGCTTACTTTACATCAGCCACTATAATTATCGCAATTCCTACCGGTGTCAAAGTATTAAGCTGAC
+>chrM_6246_6734_0:0:0_1:0:0_69
+TCAGCCACTATAATTATCGCAATTCCTACCGGTGTCAAAGTATTTAGCTGACTTGCAACCCTACACGGAG
+>chrM_6261_6802_2:0:0_2:0:0_87
+ATGGCAATTCCTACCGGAGTCAAAGTATTTAGCTGACTTGCAACCCTACACGGAGGTAATATTAAATGAT
+>chrM_5910_6386_0:2:0_1:1:0_1e
+TAGACCACCAACTGTAAATAAGAAAATAAAGCCTAAGGCTCATAGTATAGCTGGAGATCAGTTAAAATTA
+>chrM_6356_6909_2:1:0_4:0:0_72
+CTTTATTTTCTTATTTACCGTTGGTGGTCTAACCGTAATTGCTTTATCCAACTCATCCCTTGACATCGTG
+>chrM_6366_6887_1:1:0_3:0:0_85
+TTATTTACAGTTGGTGGTCTAACCGTAATTGCTTTATCCAACTCATCCCTTGACATCGTGCTTCACGATA
+>chrM_5959_6526_0:2:0_1:2:0_c5
+AATAATGTGAATCAGTGAACAAATCCTGCTATGATAGCAAACACTCCTCCCATTGATGGAACATAGTGGA
+>chrM_6458_6985_2:2:0_1:0:0_b5
+CCACTATGTTCCATCAATGGGAGGAGTGTTTGCAATCATAGCAGGATTTGTTCACAGATTCCCATTATTT
+>chrM_6510_7029_2:1:0_1:0:0_16
+CACTGATTCCCATTATTTTCCGGGTTCACCCTAGATGACACATGAGCAAAAGCCCACTTCGCCTTCATAT
+>chrM_6138_6598_0:0:0_1:2:0_6e
+GTTATGTTCACTCCTACGAATATGAAGTCGAAGTGGGCTTTTGCTCATGTGTCATCTAGGGTGAAGCCTG
+>chrM_6719_7233_1:0:0_4:1:0_b0
+TGTTCTCATCATGATCTTTATAATTTGAGAGGCCTTTGCTTCAAAACGATAAGTAATATCAGTATCGTAT
+>chrM_6720_7201_2:1:0_1:0:0_b8
+TTTCTCATCATGATCTTTATAATTAGAGAGGCCTTTGCTTCAAAACGATAAGTAATATCAGTATCGTATG
+>chrM_6367_6804_0:1:0_1:1:0_5d
+CTAAATTTGTTGAATCATACGATACTGATATTACTTATCGTTTTGAAGCAAAGGCCTCTCAAATTATAAA
+>chrM_6845_7289_0:0:0_4:0:0_5c
+GGAACCAACCTATGTAAAAGTAAAATAAGAAAGGAAGGAATCGAACCCCCTAAAATTGGTTTCAAGCCAA
+>chrM_6864_7309_1:0:0_0:0:0_a6
+GTAAAATAAGAAAGGAAGGAATCGAACCCCCTAAAATTGGTTTCAAGCCAATCTCATATCCTATCTGTCT
+>chrM_6514_6987_2:1:0_1:0:0_8
+TAATTTAACTTTGACAAAGTTATGTAATTGATTTTACTAATATCTTATTGAGAAAGACATATCGGATATG
+>chrM_7046_7557_1:0:0_2:2:1_c6
+GCCACATCCCCTATTATAGAAGAGCTAATAAATTTCCATGATCACACACTAATAATTGTATTCCTAATTA
+>chrM_7156_7672_2:1:0_0:0:0_53
+AAACCTAACACATACAAGCACAATAGATGCACTAGAAGTTGAAACCATTTGAACTATTGTACCAGCTGTA
+>chrM_7258_7724_0:1:0_0:0:0_10
+CATTCTATATATAATAGACGAAATCAACAACCCCTTATTAACCGTTAAAACCATAGGGCACCAATGATAC
+>chrM_7339_7816_1:0:0_3:4:0_43
+AATTGATGAGATAATTGTGATAATTCATGTTGAAGTATCTAGTTGTGGGTTAGCACAATGGAGATTTTAA
+>chrM_6938_7424_2:0:0_1:0:0_b4
+CTTCTAGCAGTCGTAGTTCACCAGGTTTTCGGTCGTTTGTTGGGATTATATATGAATCAAAGCATAGGTC
+>chrM_7188_7644_1:1:0_2:1:0_a9
+AGGACAATGGGCATAAAGCTATGGTTCGATCCACAAATTTCAGAGCATTGGCCATAGAATAACCCTGGTC
+>chrM_7668_8147_1:1:1_1:2:1_6b
+TCGAAAACTGATCTGCTTCAATCATTTAATTTCACTATGAAGCTAAGAAGCGTTAACCTTTTAAGTTAAA
+>chrM_7223_7762_2:1:0_1:1:0_a1
+ACAATGGAGATATTAAGGTCTCTAACTTTAACTTAAAAGGTTAACGCTCTTAGCTTCATAGTGAAATTAA
+>chrM_7358_7894_0:0:0_1:0:1_bc
+TTTTAGGATTTTGGTGAAGGTGCCAGTGGGAATGTTTGTGATGAGACTTTTAGTTGAAATAAGATAAATA
+>chrM_7550_8033_2:2:0_0:0:0_26
+AATCAAGCAACAGCAACATCCAACGGACCCGGGTTATTCTATGGCCAATGCTCTGAAATTTGTGGATCTA
+>chrM_7964_8497_0:0:0_2:0:0_8c
+CAATAATAGGATTCCCAATCGTTGTAGCCATCATTATATTTCCTTCAATCCTATTCCCATCCTCAAAACG
+>chrM_7785_8278_5:1:0_2:0:0_99
+GGAAGCCTGTAATTACGGCTGCAGCTCATAGTGGAATGGCTATACTTAGATTTATGGATATTTGGGTAGT
+>chrM_7728_8283_1:4:0_2:0:0_1b
+GTGTCGGAAGCCTGTAATTACGGCTCCATCTCCTAGTGGAATGGCTATACTTAGATTTATGGATAGTTGG
+>chrM_7788_8291_0:0:0_3:1:0_86
+TTAAGTTTGTGTCGGAAGCCTGTAATTAGGGCTCCAGCTCATAGGGGAATGTCTATACTTAGATTTATGG
+>chrM_7835_8385_1:0:1_2:0:0_c7
+TGGTAGAATAAATAGGCTAATTGTTTCAATAATAATAATTATTGGAATTAGTGAAATTGGAGTTCCTTGT
+>chrM_8325_8781_1:0:0_2:0:0_9d
+TCCAATTTCACTAATTCCAATACTTATTATAATTGAAACAATTAGCCTATTTATTCAACCAATGGCATTA
+>chrM_7872_8415_2:0:1_1:0:0_1a
+GTTAGCTGTAAGCCGGACTGCTAATGCCATTGGTTGAATAAATAGGCTAATTGTTTCAATCATAATAAGT
+>chrM_7939_8482_1:1:0_2:0:0_25
+GGCTAATATTTATTAATACTAGAGTAGCTCCTCCGATTATGTGTATTAATAAGTGTCCTGCAGAAATGTT
+>chrM_8733_9211_0:0:0_0:0:0_47
+TTAACCCTTGGCCTACTCACCAATATCCTCACAATATATCAATGATGACGAGACGTAATTCGTGAAGGAA
+>chrM_8419_8906_1:0:0_3:0:0_9f
+CGGTGAGAAGAATGCTGCAAAGAAAAATACTTCCGAGACGATGAATAGAATTATACCATATCGTAGTCCT
+>chrM_8886_9293_2:1:0_0:0:1_a2
+TTTGGAGGATTCTTCTGAGCGTACTATCATTATAGCCTCGTACCAACACATGATCTAGGAGGCTGCTGAC
+>chrM_9032_9593_1:2:1_1:0:0_b2
+TTCATTACATGACCTCATTATAGCCTTATAGAAGGTAAACGAAACCACATAAAACAAGCCCTACTAATTA
+>chrM_8761_9187_1:1:0_0:0:0_ba
+CCATAGATACCATCTGAAATGGAGAATGATGTTTCAAAGTATTCTGAAGCTTGGAGGATGGTGAAGTAAA
+>chrM_9120_9714_1:1:0_0:1:0_88
+TACTTCACCATCCTCCAAGCTTCAGAATACATTGAAACACCATTCTCCATTTCAGATGGTATCTATGGTT
+>chrM_9142_9548_1:1:0_1:2:0_77
+CAGAATACTTTGAAACACCATTCTCGATTTCAGATGGTATCTATGGTTCTACATTCTTCATGGCTACTGG
+>chrM_9150_9818_1:1:0_1:1:0_bf
+TTTGAAACACCATTCTCCATTTCAGATGGTATCTAAGGTTCTACATTCTTCATGGCTACTGGATTCCATG
+>chrM_8863_9244_0:0:0_1:0:0_92
+GTTGATCCAATAATTACATGGAGTCCATGGAATCCAGTAGCCATGAAGAATGTAGCACCATAGATACCAT
+>chrM_8794_9257_1:1:0_1:0:0_79
+AAGAATAAGGAATGTTGATCCAATAATTACATGGAGTCCATGGAATCCAGTAGCCATGAAGAATGTAGAA
+>chrM_9222_9781_2:0:1_1:0:0_23
+CTCCATGTAATTATTGGATCAACATTCCTTCTAGTTTGCCTACTAGACAACTAAAATTTCACTTCACATC
+>chrM_9038_9471_1:3:0_1:1:0_8a
+TGTACAGGTTAATTACTCTGTTCTGGGTTTATTCAGAATCTACTAATTGGAAGTCAGTTCTATTAATTAT
+>chrM_9031_9522_3:3:0_2:0:0_84
+ATGGAACTAGAATTAGCGTTAGGGATAATAAAATATTAATGAAGATAACAGTGTACATGTTAATTACTCT
+>chrM_9505_10155_3:0:0_1:0:0_9a
+CGCTACTTCTAGTTGCATTCTGACTCCCCCAAATACATCTGTCCTCAGAAAAAGCAAATCCATATGAATG
+>chrM_9647_10116_2:0:0_1:2:0_2a
+ATTATTTGACCTAGCAATTGCTCTTCTACTTCCACTACCATGAGCAATTCAAACAATTAAAACCTGTACT
+>chrM_9409_9920_3:1:0_1:0:0_d
+GATAGAGAGAAGGCTATGGTGAGGTTGAAGAAGGTAGATGGCATATTGGTAATTATGAACATCATCATAA
+>chrM_9897_10466_3:1:0_1:0:2_1
+CCTCACCATAGCCTTCTCACTATCACTACTAGGAACACTTATATTTCGCTCACACCTCATATCCACATTA
+>chrM_9907_10368_2:0:0_1:0:0_c2
+GCCTTCTCACTATCCCTTCTAGGGACACTTATATTTCGCTCTCACCTAATATCCAGATTACTATGCCTGG
+>chrM_9910_10411_1:1:0_0:1:2_bb
+TTCTCACTATCACTTCTAGGAACACTTATATTTCGCTCTCACCTAATATCCACATTACTATGCCAGGAAG
+>chrM_9496_9991_0:0:0_3:1:0_80
+CTAATACTATGCCTTCCAGGCATAGTAAAGTGGATATTAGGTGAGAGCGAAATCTAAGTGTTCCTAGAAG
+>chrM_10106_10577_3:1:0_2:0:0_5b
+AACTAGTAAAAGTTTCAAACACGAACGGAACAGATTACGTCCAAAATCTCAACCTGCTACAATGGTAAAA
+>chrM_10193_10658_0:2:0_1:0:0_b6
+AATGCTACTCCCACTAACCTGACTATCAAGCCCTAAAAAAACCTGCACAAACGTAACCTCATATAGTTTT
+>chrM_9735_10262_1:0:0_1:2:0_40
+AAAACTATATGAGGTTACGTTTGTGCAGGTATTTTTAGGGCTTGATAGTCAGGTTAGTGGGAGTAGCATT
+>chrM_10206_10702_1:0:0_3:1:0_9e
+CTAACCTTACTATCAAGCCCTAAAAAAACCTGAACAAACGTAACCTCATATAGTTTTCTAATTAGTTTAA
+>chrM_10254_10719_0:0:0_1:1:0_8e
+TATAGTTTTCTAATTAGTTTAACCAGCCTAACACTTCTATGACAAACCGACGAAAATTATAAAAACTTTT
+>chrM_10023_10620_2:2:0_3:0:0_4
+AAACTCCAACTCCATAAGCTCCATACCATTCCCCATCACGATCGTAGTTATCGCAGCCTGCGAAGCAGCT
+>chrM_10203_10663_1:0:0_1:0:0_42
+AAGATGAGGGCAATTAGCAGTGGAATAGAACCGATTCGGGTATAAAATAGGAAATAAATCCCTGCGTTTA
+>chrM_10362_10821_2:1:2_0:0:0_c
+CTTTTGGTAGTCATAGGTGAACTCCATATAATGGTATTTTAATAAGAAATGCTATTATGCATGCCAACCA
+>chrM_10389_10966_1:0:0_1:0:0_61
+CATAGGGAGAGAAGGAAGAAGGGGTATGCTATATATTTTGTTAGTGGGTCTAGAATAATGGAGATGCGAA
+>chrM_10461_11010_1:1:0_0:0:0_21
+AATCTGTTTGGCGTAAGCAGATTGAGCTAGTTATAATTATTCCTCATAGGGAGAGAAGGATGAAGGGGTA
+>chrM_11041_11475_1:0:0_1:1:0_7b
+GCCACATAGCACTTGTTCTTGCATCAATCATAATCCAAACTCCATGAAGCTTCATAGGAGCAACAATACT
+>chrM_10767_11161_1:0:0_2:0:1_39
+GAGTTTGCTAGGCAGAATAGGAGTGATGATGTGAGGCCATTTTCGATTATTAGTATTTTGCTCCTATGAA
+>chrM_11211_11625_0:1:0_2:0:0_37
+CAAATGGTCTTACCACTTATAGCCACATGATGACTGATAGCAAGTCTAGCTAATCTAGCTCTACCCCCTT
+>chrM_11475_12014_1:1:0_2:1:0_56
+ATAGCCCTTCACATAATTCCACTTATTATTCTAACTACCAGTCCAAAACTAATTACAGGCCTGAGAATAT
+>chrM_11195_11669_2:0:0_1:0:0_49
+AGCAAGCCATGTTTTTAAACATGGAAGCATGAATTAGCAGTTCTTGCAATCTTTCTTGGTGAATAAGGAG
+>chrM_11464_11999_0:1:0_3:1:0_3a
+AGAGAAAAAGTTCGTTTTTAAGCATATTTTAAGTTCTATTGAATTTATGGTGACTCAGTGCCAGGTTGTA
+>chrM_12174_12610_1:1:0_0:0:1_93
+GAAGGTGTGGGAATTATATCTTTCCTACTAATTGGATGATGGTACGGACGAACAGTCGCAAATACTGCAG
+>chrM_11715_12248_2:1:0_1:1:1_a0
+TAGGGCTGCAGTATATGCGACTGTTCTCCGTACCATCATCCAATTAGTAGGAAAGATATAATTCCCACCC
+>chrM_12218_12618_2:1:1_1:1:0_32
+CGGAGAACCGTCGCAAATACTGCAGCCCTACAAGCAATCCTCTATAACCGCATCTGAGACATCGGATTCA
+>chrM_12243_12713_2:0:0_1:0:0_bd
+GCCCTCCAAGCAATCCTCTATACCCGCATCGGAGACATCGGATTCATTTTAGCTATAGTTTGATTTTCCC
+>chrM_12113_12598_3:3:0_2:0:1_70
+CCTGTTTACCATGCTTATCCTCACCTCAGCCAACCACATATTTCAACCTTTCATTGGCTGAGCAGGGTTT
+>chrM_12064_12604_0:1:0_1:0:1_aa
+GTAAATAATGTGGTTAGGGCTCCGAGGCAAAGTATAGTTGTTAAAATAAAGTTAATATTAGCGTGAGGGG
+>chrM_12577_13079_0:0:0_1:1:1_11
+ATTTTGGTTAATGGAGATGTAGGGGGGGAAAAGGCGGTTTTGTTATTGTTACGAAGTAAATGATTCGTAT
+>chrM_12622_13091_0:0:0_3:0:1_78
+CCCAAAACGACATCAAAAAAATCATTGCCTTCTCTACATCAAGCCAACTAGGCCTGATAATAGTGACGCT
+>chrM_12705_13147_4:0:0_2:0:0_94
+CGACACCTAGCATTCCTACACATCTGTACCCACGCAATGTTCAAAGCTATACTCTTTCTATGCTCTGGCT
+>chrM_12275_12781_1:0:0_1:0:1_6
+ATGATTGAGCGAGAGCATATAGAAGAGTATAGCTTTGAAGAATGCGTGGGTACAGATGTGTAGGAATGCT
+>chrM_12355_12806_0:1:0_1:0:0_6a
+GTCTTGTTCGTCTGCCAGGCTATGAATTATTGAGCCAGAGCATATAAAGAGTATAGCTTTGAAGAATGCG
+>chrM_12440_12937_5:0:0_1:0:0_8b
+ATTGCTTCAATAATTAGGTCTTTTGAGTAGAACCCTGTTAGGAATGGTATTCGTGTGAGGGCGAGGCTTC
+>chrM_12640_13011_2:0:0_2:1:0_62
+TGCTGTACATAGCTGTCATCGAAGTGGGGATTAGTGTAATTAGTAGGGCTCAGGCGTTGGTGTTGCAGGT
+>chrM_12982_13475_3:1:0_2:0:1_75
+TCGCCACTTCTATGACAGCTATGAACAGCATACGACTCATTTACTTCGTAACAATCACAAAACCGCGTTT
+>chrM_12720_13279_1:0:1_2:0:0_2
+ATTGCTAGTTTTATGGTTAGGTTGTTTAGTTCTAGTGCGATTAGTAATCCTAATACTGAAATAATTAGGG
+>chrM_12881_13337_0:0:0_1:1:0_89
+AATAGATGGTAAAAACCCCAGTAAACTTGAGAAGGATGAATATGGATTTGCTTTATTTATTGATAGTTTT
+>chrM_13281_13783_1:1:0_1:0:0_67
+AATAAAGCAAATCCATATTCATCCTTCACAAGTTTACTGGGGTTTTTCCCATCTATTATTCACCGCATTA
+>chrM_13494_14044_3:1:0_1:1:0_7d
+AAATTGTACATTATATCATTCCTAATTAACATCATCTTAATTATTATCTTTTACTCCAATAATCTCGAGT
+>chrM_13142_13600_1:0:0_1:2:0_34
+ATCTTTGTTTGCGGGTATTTTTGTTATTATAGAGATTACTCGAGATTAATTGAGTATAAGAAAATAATTA
+>chrM_13326_13750_2:0:1_2:1:0_82
+TTATTATGATGAAGTTGGAGTAATTACTCTTGATGGTATGGGAGATTGGTTGATGTATTAGGTTGATGAT
+>chrM_13198_13763_2:0:0_0:1:0_7c
+TTTGTGTGCTTAATTATTATGATGAAGTTGGAGTAATTAATCTTGATGGTATGGGAGATTGGTTGATGTA
+>chrM_13715_14154_1:0:0_1:1:0_96
+CCATCACGATTAATTACTCCAACTTCATCATAATAATTAAGCACACAAATTAAAAAAACCTCTATAATCA
+>chrM_13338_13860_2:1:1_2:0:1_4d
+ATTCACCGCATTACACCCATAAAATTCTGAACCTAAGCCTAAAAACATCCCTGACTCTCCTAGAGTTGAT
+>chrM_13813_14351_0:1:0_0:1:0_1f
+TCAGTTAGATCCCCAAGTCTCTGGATATTCCTCAGTAGCTATAGCAGTTGTATATCCAAACACAACCAAC
+>chrM_13482_13976_0:0:0_1:2:0_c1
+TAATTGTTACTGGGTTTGTTGGTCGTTTAATGGTTTTAGGGTTTGGTTGATCGTTTTTAGGTTTAATAGT
+>chrM_13910_14543_2:1:0_1:1:0_30
+ATTAAACCTAAAAACGATCCACCAAACCCTAAAACCATTAAACGAGCAACAAACCGACTAACAATTAAAC
+>chrM_13936_14395_2:2:0_1:1:1_76
+CCCTAAAACCATTAAACGACCAACAAACCCAGTAACCATTAAACCTAAACCTCCATAAATAGGTGAATGC
+>chrM_13940_14475_1:1:0_3:2:0_27
+AAAACCATTAAACGACCAACAAACCCACTAACAATTAACCCTAAACCTCCATAAATAGGTGAAGGCTTTA
+>chrM_14052_14489_0:0:0_3:4:0_4c
+CAAAAATATAATTATTCATTATTTCTACACAGCATTCAACTGCGACCAATGACATGAAAAATCATCGTTG
+>chrM_14105_14613_0:0:0_2:0:0_48
+ATGAAAAATCATCGTTGTAATTCAACTACAGAAACACCTAATGACAAACATACGAAAAACACACCCATTA
+>chrM_14128_14614_0:1:0_1:1:0_97
+AACTACAGAAACACCGAATGACAAACATACGAAAAACACACCCATTATTTAAAATTATTAACCACTCATT
+>chrM_14131_14628_2:1:0_2:1:0_36
+TACAGAAACACCGAATGACAAACATACGACAAACACACCCATTATTTAAAATTATAAACCACTCATTCAT
+>chrM_13791_14330_0:0:0_3:0:0_29
+GGCTGTTATTGTAACTGATGTGTAGTGAATGGCTAAGAAAAGACCTGTAATGATTTGGACTATAAGGCAG
+>chrM_13944_14351_1:1:0_0:0:0_44
+AATGTGTGTTACTGATGAAAAGGCTGTTATTGTATCTGATGTGTAGTGTATGGCTAAGAAAAGACCTGTA
+>chrM_13992_14451_1:1:0_1:3:0_52
+ATAAGCCTCGTCGGAGCTGAAGGAACAAGCAAATAAAAAATATTGAGGCTCCGTTTGCGTGTATATATCG
+>chrM_14442_15026_1:2:0_3:0:0_60
+CGAGGCTTATATTATGGATCAGATACATTTATAGAAACCTGAAACATTGGAGTACTTCTTCAGTTCGCAG
+>chrM_14576_14894_2:0:0_0:0:0_5f
+AGTTATTCCAAACCTCCTATGAGCCATCCCATATATTGGAACAACCCTAGTCGAATGAATTTGAGGGGGC
+>chrM_14707_15163_1:1:0_1:2:0_9
+TTATCGGGGCCCTAGCAATCGTTCACCTCATCTTCCTCCACGAAACAGGATCAAACAACCCAACAGGATT
+>chrM_14728_15189_1:2:0_2:0:0_7a
+TTCACCTCATCTTCCTCCACGAAACAGGATCAAACCACCCAACAGGATTATACTCAGATGCAGATAAAAT
+>chrM_14794_15314_1:0:0_1:0:0_c0
+AAATTCCATTTCACCCCTACTATACAATCAAAGATATCCTAGGTATCCTAATCATATTCTTAATTCTGAT
+>chrM_14975_15480_1:0:1_0:1:0_4e
+ATACGCCATTCTACGCTCCACTCCCCAATAAACTAGGAGGTGTCCTAGCCTTAATCTTATCTATCCTAAT
+>chrM_15196_15749_1:1:1_2:1:0_c4
+GCTAACTAGCCCCATCTCATACTTCTCAATCATCTTAATTCTTATACCAATGTCAGGAATTATCGAAGAC
+>chrM_14768_15298_0:1:0_1:1:0_ac
+CTATCAAGACATGGATATAATTTTAGTATTTTGTCTTCGATAAGTCCTGAGCTTGGTATAAGAATTAAGA
+>chrM_14885_15311_3:1:0_1:0:0_3
+AGTAATGTTTATACTATCAAGACATGGATATAATTTTAGTATTTTGTCTTCGATAATTCCAGAGATTGGT
+>chrM_14820_15346_1:0:0_0:0:0_5a
+AAGAGAAGATCTTCATTTCAGGTTTACAAGACCAGAGTAATGTTTATACTATCAAGACATGGATATAATT
+>chrM_14858_15398_0:0:0_3:0:0_b3
+CAGCTTTGGGTGCTGGAGGTGGGTAGTAGCTCCTTCTTCTTGATGTCTTGAGAAGAGCAGATCTTCATTT
+>chrM_15417_15889_0:0:0_2:0:0_50
+TTCTTGAGTACATAAATTTACATAGTACAACAGTACATTTATGTATATCGTACATTAAACTATTTTCCCC
+>chrM_14988_15504_0:0:0_1:1:0_38
+GTATTAGCTTATATGCTTGGGGAAAATAGTTTAATGTACGATATACCTAAATGTACTGTTGTACTATGTA
+>chrM_15462_15945_2:1:0_0:0:0_0
+TATCGTACATTAAACAATTTTCCCCAAGCATATAAGGTAATACATTAAATCAATGGTTCAGGTCATAAAA
+>chrM_15171_15615_1:0:0_0:1:0_c3
+TAACACAGATATGTCCTTATAACATTAGTTTAATGTGTTTAAGATAATATTCATGGTATATATATTGGTT
+>chrM_15361_15805_1:0:0_2:0:0_81
+TGAAGTAAGAACCAGATGTCTTATAAAGTTTCAGTTTAGCTACCCGCAAGTTTAATGGGCCCGGAGCGAG
+>chrM_15481_15968_1:2:0_2:0:0_6d
+GTCCTTACATGCCTTGACGGCTATGTTGATGAAAGTAGGCCAAAATAAAAAGATCCCAAATGCATGACAC
+>chrM_15523_16020_2:1:0_1:1:0_31
+GGGTTTTGCGGACTAATGATTCTTCACCTAAGGTGCGTCTAGACTGTGTGCTGTCCTTTCATGCCTTGAC
+>chrM_15549_16044_0:1:0_1:1:0_59
+ATGAATAATTAGCCTTAGGTGATTGGGTTTTGCGGACTAATTATTCTTCACCGAAGGTGCGTCTAGACTG
+>chrM_15720_16131_0:1:0_2:1:0_58
+TGTTTATGGGGTTTGGCATTAAGAGGACGGGGTGGGGGGTTTTGAGAGTTAAAATTTGGTATTGAGTAGC
+>chrM_15642_16224_2:1:0_0:0:0_a5
+AGTACTAAAATATAAGTCATATTTTGGGAACTACTAGAATTGATCAGGACATAGGGTTTGATAGTTAATA
+>chrM_15820_16268_3:1:0_1:0:2_7f
+TTAGAGTTTTGGTTCACGGAACATGATTTTGTAAAATTTTTACAAGTACTAAAATAAGTCATATTTTGGG
+>chrM_13991_14484_3:1:0_3:4:0_20
+TAAATAGGTGAAGGCTTTAATGCTAACCCCAGACAACCAACCCAAAATAATGATCTTAAAACCAAAATAT
+>chrM_8781_9305_4:1:0_3:0:1_3e
+TAAGTGATGTTTTGATGTGCAGTGAAATTTTAGTTTTCTAGTAGGCAAACAATAAGGAATGTTGATCCAA
+>chrM_14312_14826_2:1:1_4:1:0_a4
+CTTTGATTTTATAGTAGGGGTGAAATGGACATTTATCTGCATCTGAGAATAATCCTGTTGGGTTGTTTGA
+>chrM_408_812_0:2:1_4:2:0_ad
+TGAAAAATCATTGTTAGGACCTAAACCGTCAATAACGAAAGTAATTCTACTCATTTATAATACACGACAG
Binary file samtools_fastx/test-data/samtools_fastx-out1-2.fasta.gz has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/samtools_fastx-out1-3.fasta	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,400 @@
+>chrM_271_788_1:2:0_0:1:0_73
+TGACTAAGTTATACCTCTTAGGGTTGGCAAATTTCGTGCCAGCCACCTCGTTCATACGATTAACCCAAAC
+>chrM_296_703_3:1:0_0:1:0_b
+TTTAAATTTCGTGCCAGCCACCTGGGTCATACGATTAACCCAAACTAATTATCTTCGGCGTAAAACGTGT
+>chrM_101_581_3:0:0_1:0:0_45
+TTTTAAGCTATGGCTAGTAGTTCTCTGGCAAATATTTTTGTTAAATTTAATTATTTAGGTTTATGGCTAA
+>chrM_317_794_1:3:0_0:1:0_18
+AAAATGTAGCCCATTTCTTCCCATTGCATTGGCTACACCTTGACCTAACGTTTTTATGTTTGATTCTTTT
+>chrM_826_1305_2:0:0_0:0:0_63
+AAACTAAAGGACTAAGGAGGATTTAGTAGTAACTTAAGAATAGAGAGCTTAATTGAATTGAGGAATGAAG
+>chrM_424_929_1:0:1_1:1:0_4a
+TAATTTGAGGAGGGTGACTGGCGGTGTGTGCGTACTTCATTGCTCAATTCAATTAAGCTCCCTATTCTTA
+>chrM_946_1374_2:0:1_1:0:0_b7
+CTTATTTCTAGACATCCGTTTCTGAGAGGAGATAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTT
+>chrM_769_1311_4:2:0_1:0:0_9b
+TTAGTTAGAAGTTTTCTAGTTAGTTCATTATGCAAAAGGAACAAGGTTTAATCTTTGCTTGTTCTTACTT
+>chrM_1366_1837_1:0:0_0:0:0_24
+TGAATCAACTCGTCTATGTGGCAAAATAGTGAGACGATTTTTAGGTAGAGGTGAAAAGCCTAACGAGCTT
+>chrM_1166_1638_1:0:0_3:1:0_54
+ATCGCATTCTTTATTGGTGGCTGCTTATAGGCCTCCAATGGTTAAAAGCTGTTTTGTTAATTATTCACTA
+>chrM_1187_1670_2:0:0_1:1:0_5
+ATGGAATTAATTGAAATTTTATTTTGAGCTTGATCGCTTTCTTTATTGGTGGCTGCTTTTAGGCCTACAA
+>chrM_1654_2097_0:1:0_1:0:0_a8
+ATTTCAATTAATTCCATAATCTACACCAACTTCCTAAACTTAAAATTGGGTTAATCTATAACTTTATAGA
+>chrM_1772_2275_1:0:0_1:0:0_3f
+CGCGTATAACAACTCGGATAACCATTGTTAGTTAATCAGACTATAGGCAATAATCACACTATACATAATC
+>chrM_1396_1891_4:1:0_3:0:0_55
+ATCTTTCCTATAGGCATTCCGGATTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA
+>chrM_1461_2059_1:2:0_0:0:0_8f
+CCCTAATTAAGGAACAAGTGATTATGCTACCTTTGCACGGTCAGGATACCGCGGCCGTTAAACTTTAGTC
+>chrM_2021_2595_3:0:0_2:0:0_22
+CGTGCAACGGTAGCATAATCACTTGTTCCTTAATTAGGGACTAGCATGAACGGCTCAACGAGGGTCCACC
+>chrM_2195_2667_1:0:0_2:0:0_95
+GTAGGTTAGAGGGTGTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGCTTATAT
+>chrM_2740_3253_1:1:0_1:1:0_6c
+TCTCCCTAAAAGTGTTCTTTATTATTATCCTAACACTCCTCGTCCCCATTCTAATCGCCATAGCCTTCCT
+>chrM_2945_3338_1:0:0_1:1:0_19
+AACCTCTATATCCTTATTTATTATAGCACCTACCCTATCACTCACACTAGCATTAAGTCTATGAGTTCCC
+>chrM_2706_3137_0:1:0_1:0:1_af
+TAGTGAGTATTTGGAGTTTGAGGCTCATCCTGATCAAGAATGGAGTAAACTGCTAGGCTAGATGTTGCTA
+>chrM_2674_3159_3:1:0_1:1:1_e
+TTATTGGGGTGGCAGAGCCATGAAATTGCGTAAGACTAAAAACCTTGTTCCCAGAGGTTCAAATGCTCTC
+>chrM_3135_3669_1:2:0_1:0:0_2c
+GTAATCGGAGCTTTACGAGCCGTAGCCCAAACAATTTCATATGATGTAACCATAGCTATTATCCTTTTAT
+>chrM_3204_3728_0:1:0_2:2:0_4b
+ATTCTTTTATCAGACATATTTCTATATGTCTGGTGGCACTCCCGCTTTAAAAATTGGTAAAGCAATATGT
+>chrM_2789_3314_1:0:0_0:1:0_f
+TGAGATATATCATATTATGGCTATGGGTCAGGCTGGCAGAAGTAATCATATGTGTTCTTGGGTTGTAATA
+>chrM_3422_3872_1:0:0_2:1:0_3b
+TATAGCAGAGTACACTAACATTATTCTAATAAACGCCCTAACAACTATAATCTTCCTAGGACCCCTATAC
+>chrM_3103_3621_2:1:0_1:0:0_71
+TTCATAGAAGATGTATAAGTTGATCGTAACGGAAGCGTGGCTAAGATGCTCGGATCCATAGGAATGTTGA
+>chrM_3587_4003_0:0:0_1:1:0_a7
+CTTCCGTTACGATCAACTTATACATCTTCTATGAAAAAACTTTCTACCCCTAACACTAGCATTATGTATG
+>chrM_3169_3659_1:2:0_2:0:0_68
+TCACATACATCATTCTAGTGTTAGGGGTAGAAAGTTTTTTCATAGAAGATGTATAAGTTGATCGTAACGG
+>chrM_3187_3702_2:1:0_1:1:0_8d
+TGTATGGTGGCACTCCGGCTGTAAAAATTGGTAAAGAAATATGTCACATACATAATGCTAGTGTTAGGGG
+>chrM_3289_3819_1:1:0_4:1:0_3c
+AGGAGAATTTTGAAATCTTAATTGTAGGTTCAATTCCTAATGTCCTAGAAATAAGCGGGCTTGAACCTCT
+>chrM_3889_4361_3:0:0_3:0:0_33
+TTTTGTATAAATCCTTCCCGTACTAATAAATCCTATCACCCTTGCCATCATCTACTTCACAATCTTCTTA
+>chrM_3912_4414_3:0:0_2:1:0_91
+TAATAAATCCTATCACCCTTGCCAACATCTAGTTCACAATCTTCTTAGGTCCTGTAATCACAAAATCCAG
+>chrM_3945_4422_1:2:0_0:1:0_64
+TCACAATCTTCTTAGGTCCTGTAATCACAATATCCAGGACCAACCTAATACTGATATGAGTATGCCTGGA
+>chrM_3504_4052_0:0:0_0:2:0_b9
+TGTTGATTAGTATGGGGATAATTGCTAGTAGGCTGAATTCCAGGCATACTCATATCAGTATTAGGTTGGT
+>chrM_3542_4113_1:0:0_0:0:0_65
+GAGGCTGTTGCTTGTGTGACGAAGTATTTTGTTGCTGCTTCAGTTGATCGTGGGTTTTTTTTGTTGATTA
+>chrM_3562_4117_0:0:0_3:0:0_51
+TCTTGAGGCTGATGCTTGTGTGACGAAGTATTTTGTTGCTTCTTCAGTTGATCGTGGGTTTTTTTTGTTG
+>chrM_4079_4594_1:0:0_3:0:0_28
+GCAACAAAATACTTCGTCACACAAGCAACAGCCTGAATAATTATCCTCCTGGCCATCGTACTCAACTATA
+>chrM_3560_4153_2:0:0_1:0:0_4f
+TTGTTTATAGTTGAGTACGATGGCCAGGAGGATACTTATTGAGGCTGTTGCTTGTGTGACGAAGTATTTT
+>chrM_4140_4598_2:0:0_2:0:0_12
+TCAACTATAAACAACTAGGAACATGAATATTTCAACAAGAAACAAACGGTCTTATCCTTAACATACCATT
+>chrM_3799_4278_3:2:0_1:0:0_1d
+ATCCCTTGAGTTACTTCTGGTAATCAGAAGTGGAATGGTGCGAGGCCTAGTTTTATGGATAGGGCTATTA
+>chrM_4306_4893_3:0:0_3:1:0_83
+TACATGACAAAAAATTGCTCCCCTATCAATTTTAAATCAAATTTACCCGCTACTCAACTGAACTATCATT
+>chrM_4007_4449_2:0:0_3:1:0_17
+ATAATTTTTCGTATTTGTGTTTGGTTAAATCGTCCTGATGCCCCTATGAAAATAGAAGTACTTGCTAGTA
+>chrM_3998_4489_2:1:0_1:1:0_be
+TGCTAATATTCATCCTATGTGGGCAATTGATGAATAGGGTATAATTTTTCGTATTTGTGTTTGGTTAAAT
+>chrM_4425_4987_2:0:0_2:3:0_35
+ACCAAACACAAATACGACAAATTCTAGCCTATTCATCAATTGCCCACATAGGATGAATATTAGCAATTCT
+>chrM_4427_4991_1:0:0_3:3:0_7
+TATTGCTTTGATGGGTCGCGGACTGGTATATCCTAACCTTCTAGGTAATTAGTTGGGGGGCTAGGGGTAG
+>chrM_4480_4986_1:1:0_2:3:0_98
+CTTTGATGGCTCGCTGACTGGTAAATCCTAACCTTCTAGGTAATTAGTTGGGGGGCTAGGGGTAGGGTTA
+>chrM_4484_4978_1:2:0_1:2:0_3d
+TTAGCAATTCTTCCTTAGAACCCATCCCTCACTCTACTCAACCTCATAATGTATATTATTCTTACATCCC
+>chrM_4139_4621_1:0:0_4:0:0_7e
+TTTATTTCATAGAAGTGCGATTGAGTTGATGGATATAGATTTATTTAGTATAAGTGCTAAGAATATAGGG
+>chrM_4200_4733_4:0:0_0:1:0_6f
+GGTTTTTTATAAGTTCTGTGATGATAATTCATTTTGGTAAGAATCCTGTTAGTGGTGGAAGGCCTCCTAG
+>chrM_4256_4777_1:0:0_2:2:0_66
+TAGTAGAGCTACTATTGCTATGAGTGTTGCAATAATTAGACAGTGGTTTTTTATAAGTTCTGTGATGATA
+>chrM_4383_4859_1:1:0_0:0:1_90
+GAGTTATTATTTTTGAGTTATTGTTGGTTGGAAATATTGTTAGTGAAGTGGAATAAATTAGGCGCAAGTA
+>chrM_4354_4860_0:1:0_1:0:1_b1
+TGAGTTATTATTTTTGAGTTAATGTTGGTTGGAAATATTGTTAGTGAAGTGGAATAAATTAGGCGCAAGT
+>chrM_4491_4937_1:0:0_1:1:0_5e
+GGGGGGCTAGGGGTAGGGTTATTGTGCTTATGATAGCTAGGGTGGAAAATATTAGGTTAGGTATAGTTTT
+>chrM_4918_5435_0:2:0_1:1:0_74
+AACCCTACCCCTAGCCCCCCAACTAATTACCTAGAAGGTTAGGATATACCAGTCCGCGAGCCTTCAAAGC
+>chrM_4627_5166_2:0:0_2:1:0_13
+GTATAAGTAGATTGAAGCCAGTAATAGGGTATTTAGCTGTTACCTAAATTTTCGTCGGTTTAATTCCTGC
+>chrM_4842_5304_1:1:0_0:2:0_41
+TAGACTGTAATTCTAAACACAGAGGTTTAAAACCTCTTTTTACCAGAGGTCTTAAGGTGATATTCATGTC
+>chrM_4810_5337_0:1:0_0:3:0_9c
+TAATCAACATAGGTAAAATGGCTGAGTAAGCATTAGACTGTAATTCTAAACACAGAGGTTTAAAACCTCT
+>chrM_5340_5854_0:1:0_0:0:0_a
+CGTTGATTAGTCTCAACCAATCACAAAGATATCGGAACCCTCTATCTACTATTCGGAGCCTGAGCGGGAA
+>chrM_5403_5984_0:0:0_1:2:0_ab
+GCGGGAATAGTGGGTACTGCACTAAGTATTTTAATTCGAGCAGAATTAGGTCAACCAGGTGCACTTTTAG
+>chrM_5451_5933_2:1:0_1:1:0_57
+GGTCAACCAGGTGCACTTTTAGGAGATGACCAAAAATACCATGTTATCGTAACTGCCCATGCTTTTGTTA
+>chrM_5615_6110_2:1:0_0:3:0_14
+AATAACTAATATAAGTTTTTGACTCCTACCACCATCCTTTCTCCTTCTCCTAGCATCATCAATAGTAGAG
+>chrM_5645_6067_1:2:0_1:3:0_1c
+ATAAGAAAAAAAACTTCTGGGTGCCCCAAGAATCAGAACAGATGCAGGTAGAGAATTGGGTCCCCTCCTC
+>chrM_5831_6292_0:0:0_1:0:0_15
+TATCAACATGAAACCCCCAGCCATAACACAGTATCAAACTCCACTATTTGTCTGATCCGTACTTATTACA
+>chrM_5499_5905_2:3:0_1:0:0_2f
+GTAACTGCCCATGCTTTTGTAATAATTTTCTTCCTAGTAATACCAATAATAATTGGGGGCATTGGCAACT
+>chrM_5540_5928_2:2:0_1:0:0_2d
+CTGGTAGTGATAATAGGAGCAGTACGGCTGTAATAAGTACGGATCCGACAAATAGTGGAGTTTGATACTG
+>chrM_5910_6386_0:2:0_1:1:0_1e
+CTCCTATTATCACTACCAGTGTTAGCCGCAGGCATTACTATACTACTAACACACCGCAACCTAAACACAA
+>chrM_5959_6526_0:2:0_1:2:0_c5
+CACACCGCAACCTAAACACAACTTTCTTTGATCCCGCGGGAGGAGGGGACCCAATTCTCTACCAGCATCT
+>chrM_5583_6032_2:0:0_3:1:0_2b
+GAACAGATGCTGGTAGAGAATTGTGTCCCCTCCTCCCGCGGGATCACAGAAAGTTGTGTTTAGGTTGCTG
+>chrM_6138_6598_0:0:0_1:2:0_6e
+ATAGGAATAGTATGAGCAATAATGTCTATTGGCTTTCTAGGCTTTATTGTATGAGCCCACCACATATTCA
+>chrM_5770_6257_3:0:0_1:2:0_46
+TATAGTGGCTGATGTAAAGTAAGCTCGTGTGTCTACATATAATCCTCCTGTGAATAAGTGGTGGGCTCAT
+>chrM_5930_6421_2:3:0_1:1:0_2e
+ATGTCAAGGGATGAGTTGGATAAAGCAATTCCGGTTAGACCACCAACTGTAAATAAGAAACTAAAGCCTA
+>chrM_6367_6804_0:1:0_1:1:0_5d
+TATTTACAGTTGGTGGTCTAACCGGAATTGCTTTATCCAACTCATCCCTTGACATCGTGCTTCACGATAC
+>chrM_6514_6987_2:1:0_1:0:0_8
+GATACCCATTATTTTCAGGCTTCACCCTAGATGACACAAGAGCAAAAGCCCACTTCGCCTTCATATTCGT
+>chrM_6074_6685_2:0:0_0:2:0_a3
+ACAGTGTTTCATGTGGTGTAAGCATCTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGCCCAGTC
+>chrM_6246_6734_0:0:0_1:0:0_69
+GATCATGATGAGAACAGCTGTTAGTGAAATAAATGATCGTATAGAAGAGACAGTGTTTCATGTGGTGTAA
+>chrM_6719_7233_1:0:0_4:1:0_b0
+ATAAGGATTACAGCTGGTAGCCTAGTTCAAATGGTTACAACTACTAGTGCATCTATTGTGCTTGTATGTG
+>chrM_6228_6791_1:0:0_0:0:0_ae
+AGCATACGATACTGATATTACTTCTCGTTTTGAAGCAAAGGCCTCTCAAATTATAAAGATCATGATGAGA
+>chrM_6261_6802_2:0:0_2:0:0_87
+AAATTTGTTGAAGCATACGATACTGATCTTACTTCTCGTTTTGAAGCAAAGGCGTCTCAAATTATAAAGA
+>chrM_6366_6887_1:1:0_3:0:0_85
+CGATTCCTTCCTTTCTTAATTTACTATTACATAGGTTGGTTCCTCGAATGTGTGATATTGTGGAGGGCAG
+>chrM_6356_6909_2:1:0_4:0:0_72
+ATGAAAGCAATTTTAGGTGGTTCGATTGCTTCCTTTCTTATTTTACTTTTACATAGGTTGGTTCCTCGAA
+>chrM_6458_6985_2:2:0_1:0:0_b5
+ATTTAACTTTGACAAAGTTATGTAATTGATTTTACTAATATCTTATTGAGAAAGACATATATGATATGAG
+>chrM_6938_7424_2:0:0_1:0:0_b4
+CAATAAGATATTCGTAAAATCAATTACATAACTTTGTCAAAGTTAAATTATAGATCAATAATCTAAATAT
+>chrM_6510_7029_2:1:0_1:0:0_16
+TGGCATGGGTAGGCCATATAAGATATATAGATTATTGATCTATAATTTAACTTTGACAAAGTTATGTAAT
+>chrM_7046_7557_1:0:0_2:2:1_c6
+GCTTGATTTATTCGGCCTGGGTTGCATCAGTTTAAAGTCCTAGGGAGGGGACTGCTCGTGAGTGGAGGAC
+>chrM_6720_7201_2:1:0_1:0:0_b8
+GGTTTCAACTTCTTGTGCATCTATTGTGCTTGTATGTGTTAGTTTTGTTTTTAATATTAGCGAGATGATA
+>chrM_7188_7644_1:1:0_2:1:0_a9
+TAGAAGTTGAAACCATTTGAACTATTCTAGCAGCTGTAATCCTTATCATAATTGCTCTCCCCTCTCTACG
+>chrM_6845_7289_0:0:0_4:0:0_5c
+GGTTGTTGATTTCGTCTATTATATATAGAATGCGTAGATAGGTGAGAGCCATTATGATAAGGATTACATC
+>chrM_7223_7762_2:1:0_1:1:0_a1
+GTAATCCTTCTCATAATTGCTCTCCCCTCTCAACGCATTCTATATATAATAGACGAAATCAACAACCCCT
+>chrM_6864_7309_1:0:0_0:0:0_a6
+GGTTTTAACGGTTAATACGGGGTTGTTGATTTCGTCTATTATATATAGAATGCGTAGAGAGGGGAGAGCA
+>chrM_7339_7816_1:0:0_3:4:0_43
+ATATACTGACTATGAAGACCTATGCTTTGATTCATATATAATCCCAACCAACGACCTAAAACCTGGTGAA
+>chrM_7358_7894_0:0:0_1:0:1_bc
+CTATGCTTTGATTCATATATAATCCCAACAAACGACCTAAAACCTGGTGAACTACGACTGCTAGAAGTTG
+>chrM_7156_7672_2:1:0_0:0:0_53
+TTCGAAATATTTTAGTGGAACCATTTCTAGGACAATGGGCATAAAGCTATGGTTAGATCCACAAATTTCA
+>chrM_7258_7724_0:1:0_0:0:0_10
+GGTTAACGCTCTTAGCTTCATAGTGAAATTAAATTATTGAAGCAGATCAGTTTTCGAAATATTTTAGTGG
+>chrM_7668_8147_1:1:1_1:2:1_6b
+GACACAATTATTAGGGTTCATGTTCGCACTTTTGGTGGTGGATTAGCATTATTTGTTTGATAATAAGTTT
+>chrM_7788_8291_0:0:0_3:1:0_86
+CATGATTTATCACAATTATCTCATCAATAATTACCCTATTTATCTTATTTCAACTAAAAGTCTCATCACA
+>chrM_7835_8385_1:0:1_2:0:0_c7
+TTTCAACTAAAAGTCTCATCACAAACATTCCCACTGGCCCCTTCACCAAAATCCTAACAACCATAAAAGT
+>chrM_7872_8415_2:0:1_1:0:0_1a
+CACCTTCACGAAAATCCTAACAACGATAAAAGTAAAAACCCCTTGAGAATTAAAATGAACGAAAATCTAT
+>chrM_7939_8482_1:1:0_2:0:0_25
+CTATTTACCTCATTCATTACCCCAACAATAATAGGAATCCCAATCGTTGTAGCCATCATTATATTTCCTT
+>chrM_7550_8033_2:2:0_0:0:0_26
+CGTTTTGAGGATGGGAATAGGATTGAAGGAAATATAATGATGGCTACAACGATTGGGAATCCTATTATTG
+>chrM_7785_8278_5:1:0_2:0:0_99
+CAACATGAATTATCCCAATTATCTCATGAATAAATACCCTATTTATCATATTTCAACTAAAAGTCACATC
+>chrM_7728_8283_1:4:0_2:0:0_1b
+TAAGTTAAAGTTAGAGACCTAAAAATCTCCATTGTGCTAAGCCACAACTAGATACATCAACATGAATTAT
+>chrM_8419_8906_1:0:0_3:0:0_9f
+ACTGCAGGACACTTATTAATACACCTAATCGGAGGCGCTACTCTAGTATTAATAAATATTAGCCCACCAA
+>chrM_7964_8497_0:0:0_2:0:0_8c
+TGGTAGCTGTTGGTGGGCTAATATTTATTAATACTAGAGTCGCTCCTCCGATTAGGTTTATTAATAAGTG
+>chrM_8325_8781_1:0:0_2:0:0_9d
+GTCATCATTGATATATTGTGATGATATTGGTGAGTAGGCCAAGGGTTAATAGTGTCATTGAATTATAGTG
+>chrM_8761_9187_1:1:0_0:0:0_ba
+TCACAATATATCAATGATGACGAGACGTAATTCGTGAAGGAACCTAACAAGGCCACCACACTCCTATAGT
+>chrM_8794_9257_1:1:0_1:0:0_79
+GTGAAGGAACCTAACAAGGCCACCACACTCCTCTTGTACAAAAAGGACTACGATATGGTATAATTCTATT
+>chrM_8863_9244_0:0:0_1:0:0_92
+TCATCGTCTCGGAAGTATTTTTCTTTGCAGGATTCTTCTGAGCGTTCTATCATTCTAGCCTCGTACCAAC
+>chrM_8733_9211_0:0:0_0:0:0_47
+CCAGTAGCCATGAAGAATGTAGAACCATAGATACCATCTGAAATGGAGAATGATGTTTCAAAGTATTCTG
+>chrM_8886_9293_2:1:0_0:0:1_a2
+TGATGTGAAGTGAAATTTTAGTTGTCTAGTAGGCAAACAATAAGGAATGTTGATCCAATAATTACATGGA
+>chrM_9038_9471_1:3:0_1:1:0_8a
+TACATGACGTCATCATAGCAATATAGAAGGTAAACGAAACCACATAAATCAAGCCCTACTAATTACCATT
+>chrM_9409_9920_3:1:0_1:0:0_d
+ATATCACTGACTTCCAATTAGTAGATTCTGAATAAACCCAGCACAGAGTAATTAACCTGTAGACTGTTAT
+>chrM_9031_9522_3:3:0_2:0:0_84
+TTTCAATTACATGCCCTCATCATAGCAATATAGAAGGTAAACGAAACCACATAAATCAAGCCCTCCTCAT
+>chrM_9142_9548_1:1:0_1:2:0_77
+GTACAGATTTATTTGGGGGAGTCAGAAAGCAACTAGAATTAGCGTTAGGGATAAAGAAATATTAATGAAG
+>chrM_9496_9991_0:0:0_3:1:0_80
+TATCCCTAACGCTAATTCTAGTTGCATTCTGACTCCCCCAAATAAATCTGTACTCAGAAAAAGCAAATCC
+>chrM_9032_9593_1:2:1_1:0:0_b2
+GCTTGTAGGGTCGAATCCGCATTCATATGGATTTGCTTTTTCAGAGTACAGATTTATTTGGGGGAGTCAG
+>chrM_9120_9714_1:1:0_0:1:0_88
+TAGAGGTTTTAATTGTTTGAATTGCTCATGGTAGTGGAAGTAGAAGAGCAATTTTTAGGTCAAATAATAG
+>chrM_9222_9781_2:0:1_1:0:0_23
+TGTGTTCATTCATATGCTAGGCCTAGAGATAGAATTGTGACTAGACTAAAGGCTATAATTATTATAGTAG
+>chrM_9735_10262_1:0:0_1:2:0_40
+ATTCTAGTCACAATTCTATCTCTAGGCCTAGCATATGAATGAACACAAAAAGGATTAGAATGAACAGATT
+>chrM_9150_9818_1:1:0_1:1:0_bf
+ACTAATTACGATTCACTCTGTTCATTCTAATCCTTTTTGTGTTCATTCATATGCTAGGCCTAGAGATAGA
+>chrM_9647_10116_2:0:0_1:2:0_2a
+TTTTACTAGTAGGGCTAGTCCTACAGCTGCTTCTCAGGCTGCGAAAACTACGATGGTGATGGGGAATGGT
+>chrM_9505_10155_3:0:0_1:0:0_9a
+GAGATTTTGGACGTAATCTGTTCCGAACGTGTTTGAAACTTTTACTAGTAGGGCTAGTCCTACAGCTGCT
+>chrM_10203_10663_1:0:0_1:0:0_42
+CCACTAACCTGACTAACAAGCCCTAAAAAAACCTGAACAAACGTAACCTCATATAGTTTTCTAATTAGTT
+>chrM_10206_10702_1:0:0_3:1:0_9e
+AAAATACTGAGTTTTAGGGTTCCTACATGGTTTTGGATTAAGATGAGGGCAATTAGCCGTGGAATAGAAC
+>chrM_9907_10368_2:0:0_1:0:0_c2
+AAATCATTAATGGTGTGGATAGGGGGTCTGAGGAGAATATATTTGAAAAGTTTTTATAATTTTCGTCGGT
+>chrM_9910_10411_1:1:0_0:1:2_bb
+TTGGCTAGCTATTAATATTAGTGGCAGTAATCAGGTTGTTAAAATAATTAATGGTGTGGATAGGGGGTCT
+>chrM_10389_10966_1:0:0_1:0:0_61
+CTAATATTAATAGCTAGCCAAAACCACCTAAAAAAAGATAATAACGTACTACAAAAAGTCTACATCTCAA
+>chrM_9897_10466_3:1:0_1:0:2_1
+GATTAGTCTTGAGATGTAGAGTTTTTGTAGTACGTTATTATCTTTTTTTAGGTGGTTGGCTAGCTATTAA
+>chrM_10461_11010_1:1:0_0:0:0_21
+CTAATCTGCTTACAAATTCTCCTAATCATAACCTTTTCAGCAAGTGAACTAATTATATTTTATATTTTAT
+>chrM_10106_10577_3:1:0_2:0:0_5b
+CCCTCATCGGGTAATAATAATAAGAGTTGGGATTACGGTTGCTTCAAATAAAATATAAAATATAATTAGT
+>chrM_10023_10620_2:2:0_3:0:0_4
+AAAATAGGAAATAAATCCCTGCGTTAAGGCGTTCAGTATGGTTCCCTCATCGGGTAATAATAATAAGTGA
+>chrM_10193_10658_0:2:0_1:0:0_b6
+GAGGGCAATTAGCAGTGGAATAGAACCGATTAGGGTATAAAATAGGAAATAAATCCCTGCGTTTAGGCGA
+>chrM_10254_10719_0:0:0_1:1:0_8e
+TTTGTGTTGTGAATGATAAAATTATGAGGTTTAGGGTTCCTACATGGTTTTGGATTAAGTTGAGGGCAAT
+>chrM_10362_10821_2:1:2_0:0:0_c
+ATTATTTTAACAACCTGATTACTGCCACTAATATTAATATCTAGCCAACCACCTAAAAAAAGCTAATAAC
+>chrM_10767_11161_1:0:0_2:0:1_39
+ATAGCATTTCTTATTAAAATACCATTATATGGAGTTCACCTATGACTACCAAACGCCCATGTTGAAGCTC
+>chrM_11195_11669_2:0:0_1:0:0_49
+CATGGCCCGAGGACTTCAAATGGTCATCCCACTTATAGCCACATGATGACTGATAGCAATTCTAGCTAAT
+>chrM_11041_11475_1:0:0_1:1:0_7b
+TTAGTGTTAGTACTCGTGTGTGTGAGGGTTGGAGGTTAATTATATGGTTGCTTAGTTTGCCGCGTTGGGT
+>chrM_11464_11999_0:1:0_3:1:0_3a
+AACTAACACTAATAGCCCTTCACATAATTCCACTTATTATTCTAACTACCAGTCCAAAACTAATTACAGG
+>chrM_11211_11625_0:1:0_2:0:0_37
+TGCAATCTTTCTTGGTGAATAAGGAGGTTTATTTCCTGTTGTCAGATTGACAGTCTAATGATTTTTGTAA
+>chrM_11715_12248_2:1:0_1:1:1_a0
+ACCTTGGTGCAAATCCAAATCAAAGTAATCAATATTTTCACAACCTTAATCTTATTAATCTTCATTCTTC
+>chrM_11475_12014_1:1:0_2:1:0_56
+AGATGTCAACAGGATAGAGAAAAAGATAGTTTTGAAGCTTATTTTAAGTTCTATTGAATTTATGGTGACT
+>chrM_12064_12604_0:1:0_1:0:1_aa
+TACACTCAGACCCAAACATCAATCGATTCATTAAATATCTTACACTATTCCTGTTTACCATGCTTATCCT
+>chrM_12275_12781_1:0:0_1:0:1_6
+AGACATCGGATTCCTTTTAGCTATAGTTTGATTTTCCCTAAACATAAACTCATGAGAACTTCAACAGATT
+>chrM_12355_12806_0:1:0_1:0:0_6a
+ACAACAACGACAATCTAATTCCACTTAGAGGCCTATTAATCGCAGCTACAGGAAAATCAGCACAATTTGG
+>chrM_12113_12598_3:3:0_2:0:1_70
+AAAGTGGTTAGGGGTCCGAGGCAAAGTATAGTTGTTAAAATAAAGTTATTATTAGCGTGAGGGGGTGGAA
+>chrM_12174_12610_1:1:0_0:0:1_93
+ATAGCTGTAAATAATGTGGTTAGGGCTCCGAGGCAAAGTATAGTTGTTAAAATAAAGTTATTATTAGCGT
+>chrM_12218_12618_2:1:1_1:1:0_32
+GAGCACAAATAGCTGTAAATAATGTGGTTAGGGCTCCGAGGCAAAGTATAGTTGTTAAAAAAAAGCTATT
+>chrM_12577_13079_0:0:0_1:1:1_11
+GCCTCGGAGCCCTAACCACATTATTTACAGCTATTTGTGCTCTCACCCAAAACGACATCAAAAAAATCAT
+>chrM_12622_13091_0:0:0_3:0:1_78
+GAGGTCTGGGTCATTTTCGTAAATGGAGATGTAGGTGGGGAAAACGCGGTTTTGATATTGTTACGAAGTA
+>chrM_12640_13011_2:0:0_2:1:0_62
+AAATCATTGCCTTCTCTACATCAAGCCAACTATGCCTGATAATAGTGACGCTAGGAATAAACCACCCACA
+>chrM_12243_12713_2:0:0_1:0:0_bd
+TAGGTGTGGTTGGTTTATTCCTAGCGTCACTATTATCAGGCCTAGTTGGCTTGAAGTAGAGAAGGCAATG
+>chrM_12720_13279_1:0:1_2:0:0_2
+CTACACATCTTTACCCACGCATTCTTCAAAGCTATACTCTTCTATATGCTCTGGCTCAATCATTCATAGC
+>chrM_12440_12937_5:0:0_1:0:0_8b
+AGCATCAGCAATAGACGGCCCTACACCAGTTTCATCACTACTACACTCAAGTACAATAGTATATGCAGGA
+>chrM_12881_13337_0:0:0_1:1:0_89
+CACAGGAATACCATTCCTAACAGGGTTCTACTCAAAAGACCTAATTATTGAAGCAATTAATACCTGCAAC
+>chrM_12705_13147_4:0:0_2:0:0_94
+GAGATGACAAATCCTGCAAAGATGCTTCCGCATGCTAGGCGTTTGATTGGGTTTATGAGGTCTGGGACAT
+>chrM_13142_13600_1:0:0_1:2:0_34
+CATCTCATATAAAATTCCACCAACCAGCATTCCAGTCCTCACAATACCATGATTTTTAAAAACCACAGCC
+>chrM_13198_13763_2:0:0_0:1:0_7c
+TAAAAACCACAGCCCTAATAATTTCAGTATTAGGCTTCCTAATCGCACTAGAACTAAACAACCTAACCAT
+>chrM_13326_13750_2:0:1_2:1:0_82
+TACCCATCTCTTATTCACCGCATTACACCCATAAAATTCTCAACCTAAGCCTAAAAACATCCCTAACTCT
+>chrM_12982_13475_3:1:0_2:0:1_75
+GGTTGTTAAAGTGGTTATGTTTGTGTGCAAGAGTTGCGGTGGATTTTGGGATGGTTTTTTGTAACCAGAT
+>chrM_13482_13976_0:0:0_1:2:0_c1
+AAAGGCTTAATTAAATTGTACTTTATATCATTCCTAATTAACATCATCTTAATTATTATCTTATACTCAA
+>chrM_13281_13783_1:1:0_1:0:0_67
+GATTATAGAGGTTTTTTTAATTTGTGTGGTTAATTATTATGATGAAGTTGGAGTAATTAATCTTGATGGT
+>chrM_13791_14330_0:0:0_3:0:0_29
+ATACTAAAAAACCCAAAATTAATCAGTTAGATCCCCAAGTCTCTGGATATTCCTCAGTAGCTATAGCAGT
+>chrM_13338_13860_2:1:1_2:0:1_4d
+ACTGCTATAGCTACTGAGGAATATCCAGAGACATGGGGATCTAACTGATTAATTTTGGGTATTTAGTATT
+>chrM_13940_14475_1:1:0_3:2:0_27
+CTATAAATGTATCTGATCCATAATATAATCGTCGTCCGACAAGAAGGAACAAGCAAATAAAAAATATTGA
+>chrM_13944_14351_1:1:0_0:0:0_44
+CCATTAAACGACCAACAAACCCACTAACAATTAAACCTAAACGTCCATAAATAGGTGAAGGCTTTAATGC
+>chrM_13494_14044_3:1:0_1:1:0_7d
+TTCATTATTTTCGGTTGGTTGTCTTGGGTTCGCATTAAAGCCTTCACCTATTTATGGAGGTTTAGGTTTA
+>chrM_13992_14451_1:1:0_1:3:0_52
+AAATAGGTGAAGGCTTTAATTCTAACCCAAGACAACCAACCAAAAATAATGATCTTAAAACAAAAATATA
+>chrM_14052_14489_0:0:0_3:4:0_4c
+AATGTTTCAGGTAACTATAAATGTATCTGATCCATAATATAAGCCTCGTCGGACCTTAAGGAACAAGCAA
+>chrM_13715_14154_1:0:0_1:1:0_96
+TGTTTGTCATACGGTGTTTCTGTAGTTGAATTACAACGATGATTTTTCATGTCATTGGTCGCAGTTGAAT
+>chrM_13813_14351_0:1:0_0:1:0_1f
+AATGTGTGTTACTGATGAAAAGGCTGCTATTGTATCTGATGTGTAGTGTATGGCTAAGAAAAGACCTGTA
+>chrM_13936_14395_2:2:0_1:1:1_76
+GCGTGTATATATCGGATTAGTCACCCGTAAATTAACATCTCGACAAATGTGTGTTACTGATGAAAAGGCT
+>chrM_13910_14543_2:1:0_1:1:0_30
+AAGGAGGTAGCCTATAAATGCTGTGGCTATGACTGCGAACAGAAGAAGTACTCCAATGTTTCAGGTTTCT
+>chrM_14128_14614_0:1:0_1:1:0_97
+CCAATATCTTGGATGGCTGATAGGAGGTTTGTAATAACTGTGGCACCTCAGAATGATATTTGTCCTCATG
+>chrM_14105_14613_0:0:0_2:0:0_48
+CAATATATGGGATGGCAGATAGGAGGTTTGTAATAACTGTGGCACCTCAGAATGATATTTGTCCTCATTG
+>chrM_14131_14628_2:1:0_2:1:0_36
+CGACTAGGGTTGTTCCAATATATTGGATGGCTGATAGGAGGATTGTAATAACTGTGTCACCTCAGAATGA
+>chrM_14768_15298_0:1:0_1:1:0_ac
+AACAGGATTATACTCAGATGCAGATAAAATTCCATTTCACCCCTACTATACAATCAAAGATATCCTAGGT
+>chrM_14820_15346_1:0:0_0:0:0_5a
+ATCAAAGATATCCTAGGTATCCTAATCATATTCTTAATTCTCCTAACCCTAGTATTATTTTTCCCAGACA
+>chrM_14576_14894_2:0:0_0:0:0_5f
+TAGTATGTCTGGGAAAAATAATACTAGGGTTATGAGAATTAAGAATATGATTAGGATACCTAGGATATCT
+>chrM_14858_15398_0:0:0_3:0:0_b3
+TCTCATAACCCTAGTATTATTTTTCCCAGACATACTAGGAGACCCAGACAACTACATACCAGCTAATCCA
+>chrM_14885_15311_3:1:0_1:0:0_3
+AGACATACTAGGAGAGGCCGACAACTACCTACCAGCTAATCCACTAAACACCCCACCCCATATTAAACCC
+>chrM_14442_15026_1:2:0_3:0:0_60
+TAAGGCTATGACACCTCCTAGTTTCTTGGGGATTGAGGGTAGAATGGCGTATGCAAATAGGAAATATCAT
+>chrM_14988_15504_0:0:0_1:1:0_38
+CGCTCAATCCCCAATAAACTAGGAGGTGTCCTAGCCTTAATCTTATCTATCCTAATTTTAGCCCTAATAC
+>chrM_14707_15163_1:1:0_1:2:0_9
+CCCCCAATTCAGGTTACGATAAGTAGGTTGGCTACTAGGATTCAGTACAAAATTTTTCTGATTGGGCGGA
+>chrM_14728_15189_1:2:0_2:0:0_7a
+TAATAAATGGGTGTTCTCCTGGTTGGCCCCCAATTCAGGTTAAGATAAGTAGGTTGGCTACTAGGAATCA
+>chrM_15171_15615_1:0:0_0:1:0_c3
+GTAGAACACCCATTTATTATCATTGGCCAACTAGCCTCCATCACATACTTCTCAATCATCTTAATTCTTA
+>chrM_14794_15314_1:0:0_1:0:0_c0
+CAGAGTAATGTTTATACTATCAAGACATGGATATAATTTTAGTATTTTGTCTTCGATACTTCCTGAGATT
+>chrM_15361_15805_1:0:0_2:0:0_81
+AAGAAGGAGCTACTCCCCACCACCAGCACCCAAAGCTGGTATTCTAATTAAACTACTTCTTGAGAACATA
+>chrM_14975_15480_1:0:1_0:1:0_4e
+AATAGTTTAATGTACGATATACATGAATGTACTGTTGTACTATGTAAATTTATGTACTCAAGAAGTAGTT
+>chrM_15481_15968_1:2:0_2:0:0_6d
+TTCCCCAAGCATATAAGCTAATACATTAAATCCATGGTTCAGGTCATAAAATAATCATCAACATAAACCA
+>chrM_15523_16020_2:1:0_1:1:0_31
+GTCATAAAATACTCAACAACATAAACCAATATATATACCATGAATATTATCTTAAACACATTAAACTAAT
+>chrM_15549_16044_0:1:0_1:1:0_59
+CAATATATATACCATGAATATTATCTTAAACACATTAAACTAATGTTATAAGGACATATCTGTGTTATCC
+>chrM_15642_16224_2:1:0_0:0:0_a5
+CTCTTCTCTTCCATCTGACTATCCCCTTCCCCATTTTGTCTATTAATCTTCCATCCTCCGTGAAACCAAC
+>chrM_15196_15749_1:1:1_2:1:0_c4
+TGGCCCGGAGCGAGAAGAGGGGCATTGGTGGGCGGGTTGTAGGTTTCACGGAGGATGGAAGATTAATAGA
+>chrM_15720_16131_0:1:0_2:1:0_58
+CACCAATGCCCCTCCTCTCGCTCCGGGCCCATTAAACTTGGGGGTAGCTAAACTGAAACTTTATCAGACA
+>chrM_15417_15889_0:0:0_2:0:0_50
+GTTGGTCATGGGCTGATTAGACCCGAAACCATCGAGATGTCTTATTTAAGGGGCACGTATGGGCGATAAC
+>chrM_15462_15945_2:1:0_0:0:0_0
+TGTTGATGAAAGTAGGCCAAAATAAAAAGATACCAAATGCATGACACCACAGTTATGTTGGTCATGGGCT
+>chrM_15820_16268_3:1:0_1:0:2_7f
+GTTATCGCCCATACGTTTCCCTTAACTCAGACATCTCGATGGTATCGGGTCTAATCAGCCCCTGACCAAC
+>chrM_13991_14484_3:1:0_3:4:0_20
+AAGAGGTTTCTATAAATGTATCTGATCCATAATATAAGCCTCGTCGGACCTGAAGGAACAAGCAAATAAA
+>chrM_8781_9305_4:1:0_3:0:1_3e
+CGATACGTAATTCGTGAAGTAACCTAACAATGCCACCACACTCCTATAGTACAAAAAGGACTACGATATG
+>chrM_14312_14826_2:1:1_4:1:0_a4
+ATCAGATAGAATAACAGCCTTTTCATCAGTAACACACATTTGTCGATATGTAAATTTACGGGTGACTAAT
+>chrM_408_812_0:2:1_4:2:0_ad
+GAAATGTTCTGTTATAAGAAAATGACGCCCATTTCTTCCCATTGCATTGGCTCCACCTTGACCTAACGTT
Binary file samtools_fastx/test-data/samtools_fastx-out1-3.fasta.gz has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/samtools_fastx-out1.fasta	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,800 @@
+>chrM_101_581_3:0:0_1:0:0_45/1
+GAGGTAAAATTACACATGCAAACCTCCATAGACCGGAGAAAAATCCCTTAAAGATTTACTTAAAATTTAA
+>chrM_101_581_3:0:0_1:0:0_45/2
+TTTTAAGCTATGGCTAGTAGTTCTCTGGCAAATATTTTTGTTAAATTTAATTATTTAGGTTTATGGCTAA
+>chrM_271_788_1:2:0_0:1:0_73/1
+TAGCCCATTTCTTCCCATTGCATTGGCTACACCTTGACCTAACGTTTTTATGTTTGATTCTTTTGCTTAC
+>chrM_271_788_1:2:0_0:1:0_73/2
+TGACTAAGTTATACCTCTTAGGGTTGGCAAATTTCGTGCCAGCCACCTCGTTCATACGATTAACCCAAAC
+>chrM_296_703_3:1:0_0:1:0_b/1
+GGGTTTGCTGAAGATGGCGGTATATAGGCTGAATTAGCAAGTGATGGTGAGGTAGAGCGGGGTTTATCGA
+>chrM_296_703_3:1:0_0:1:0_b/2
+TTTAAATTTCGTGCCAGCCACCTGGGTCATACGATTAACCCAAACTAATTATCTTCGGCGTAAAACGTGT
+>chrM_317_794_1:3:0_0:1:0_18/1
+CTCGGTCATACGATTAACCCAAACTAAATATTTTCGGCGTAAAACGTGTCATCTATAAATAAATAAATAG
+>chrM_317_794_1:3:0_0:1:0_18/2
+AAAATGTAGCCCATTTCTTCCCATTGCATTGGCTACACCTTGACCTAACGTTTTTATGTTTGATTCTTTT
+>chrM_408_812_0:2:1_4:2:0_ad/1
+TGAAAAATCATTGTTAGGACCTAAACCGTCAATAACGAAAGTAATTCTACTCATTTATAATACACGACAG
+>chrM_408_812_0:2:1_4:2:0_ad/2
+GAAATGTTCTGTTATAAGAAAATGACGCCCATTTCTTCCCATTGCATTGGCTCCACCTTGACCTAACGTT
+>chrM_424_929_1:0:1_1:1:0_4a/1
+GGACCTAAACCGTCAATAACGAAAGTAATTCTAGTCATTTATAATCCACGACAGCTAAGACCCAAACTGG
+>chrM_424_929_1:0:1_1:1:0_4a/2
+TAATTTGAGGAGGGTGACTGGCGGTGTGTGCGTACTTCATTGCTCAATTCAATTAAGCTCCCTATTCTTA
+>chrM_769_1311_4:2:0_1:0:0_9b/1
+CAAAGGGAAGACATGGGGTACATTTTCTTATAACAGAACATTACTATCCCCTTTATGAAACTAAAGGACT
+>chrM_769_1311_4:2:0_1:0:0_9b/2
+TTAGTTAGAAGTTTTCTAGTTAGTTCATTATGCAAAAGGAACAAGGTTTAATCTTTGCTTGTTCTTACTT
+>chrM_826_1305_2:0:0_0:0:0_63/1
+AGAAGTTTTCTAGTTAGTTCATTATGCAAAAGGTACAAGGTTTAATCTTTGCTTGTTCTTACTTTTAATT
+>chrM_826_1305_2:0:0_0:0:0_63/2
+AAACTAAAGGACTAAGGAGGATTTAGTAGTAACTTAAGAATAGAGAGCTTAATTGAATTGAGGAATGAAG
+>chrM_946_1374_2:0:1_1:0:0_b7/1
+GTTGATTCATAAAATTGTTTTTAGGTAGGTCGTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTA
+>chrM_946_1374_2:0:1_1:0:0_b7/2
+CTTATTTCTAGACATCCGTTTCTGAGAGGAGATAAGTCGTAACAAGGTAAGCATACTGGAAAGTGTGCTT
+>chrM_1166_1638_1:0:0_3:1:0_54/1
+AGAATTGGAGAAAGAAATTCGTACATCTAGGAGCTATAGAACTAGTACCGCAAGGGAAAGATGAAAGACT
+>chrM_1166_1638_1:0:0_3:1:0_54/2
+ATCGCATTCTTTATTGGTGGCTGCTTATAGGCCTCCAATGGTTAAAAGCTGTTTTGTTAATTATTCACTA
+>chrM_1187_1670_2:0:0_1:1:0_5/1
+TACATCTAGGAGCTATAGAACTAGAACCGCAAGGGAAAGATGAAAGCCTAATTAAAAGTAAGAACAAGCA
+>chrM_1187_1670_2:0:0_1:1:0_5/2
+ATGGAATTAATTGAAATTTTATTTTGAGCTTGATCGCTTTCTTTATTGGTGGCTGCTTTTAGGCCTACAA
+>chrM_1366_1837_1:0:0_0:0:0_24/1
+ATTTATAGTGTGATTATTGCCTATAGTCTGATTAACTAACAATGGTTATCCGAGTTGTTATACGCGTATG
+>chrM_1366_1837_1:0:0_0:0:0_24/2
+TGAATCAACTCGTCTATGTGGCAAAATAGTGAGACGATTTTTAGGTAGAGGTGAAAAGCCTAACGAGCTT
+>chrM_1396_1891_4:1:0_3:0:0_55/1
+GAGAAGATTTTTAGGTAGAGGTGAAACGCCTACCGAGCTTGTTGATAGCTTGTTACCCAAAAAGTGAATT
+>chrM_1396_1891_4:1:0_3:0:0_55/2
+ATCTTTCCTATAGGCATTCCGGATTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA
+>chrM_1461_2059_1:2:0_0:0:0_8f/1
+GAATTTAAGTTCAATTATAAACTTGCTGAAAAAAGAACAAAATCAAAAAGTAAGTTTAGATTATAGCCAA
+>chrM_1461_2059_1:2:0_0:0:0_8f/2
+CCCTAATTAAGGAACAAGTGATTATGCTACCTTTGCACGGTCAGGATACCGCGGCCGTTAAACTTTAGTC
+>chrM_1654_2097_0:1:0_1:0:0_a8/1
+AGAGACAGTTGGACCCTCGTTTAGCCGTTCATGCTAGTCCCTAATTAAGGACCAAGTGATTATGCTACCT
+>chrM_1654_2097_0:1:0_1:0:0_a8/2
+ATTTCAATTAATTCCATAATCTACACCAACTTCCTAAACTTAAAATTGGGTTAATCTATAACTTTATAGA
+>chrM_1772_2275_1:0:0_1:0:0_3f/1
+ATTTTTATTCTCCGAGGTCACCCCAACCGAAATTTCAAACTTATACTATAGTTTTTGGGCCATTAGGTTT
+>chrM_1772_2275_1:0:0_1:0:0_3f/2
+CGCGTATAACAACTCGGATAACCATTGTTAGTTAATCAGACTATAGGCAATAATCACACTATACATAATC
+>chrM_2021_2595_3:0:0_2:0:0_22/1
+AAGGTGGCTCTATTTCTCTTGACCTTTCGTACTGGGAGAAATCGTAAATAGATAGAAACCGACCAGGATT
+>chrM_2021_2595_3:0:0_2:0:0_22/2
+CGTGCAACGGTAGCATAATCACTTGTTCCTTAATTAGGGACTAGCATGAACGGCTCAACGAGGGTCCACC
+>chrM_2195_2667_1:0:0_2:0:0_95/1
+TTTAATTTATTAAACCTAATGGCCCAAAAACTATAGTCTAAGTTTGAAATTTCGGTTGGGGTGACCTCGG
+>chrM_2195_2667_1:0:0_2:0:0_95/2
+GTAGGTTAGAGGGTGTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGCTTATAT
+>chrM_2674_3159_3:1:0_1:1:1_e/1
+CTACGGCTCGTAAAGCTCCGATTAGTGAGAATTTGGAGTTTGAGGCTCATCCTGATCAAGAATGGAGTAA
+>chrM_2674_3159_3:1:0_1:1:1_e/2
+TTATTGGGGTGGCAGAGCCATGAAATTGCGTAAGACTAAAAACCTTGTTCCCAGAGGTTCAAATGCTCTC
+>chrM_2706_3137_0:1:0_1:0:1_af/1
+AGACTTAAAACCTTGTTCCCAGAGGTTCAAATCCTCTCCCTAATAGTGTTCTTTATTATTATCCTAACAC
+>chrM_2706_3137_0:1:0_1:0:1_af/2
+TAGTGAGTATTTGGAGTTTGAGGCTCATCCTGATCAAGAATGGAGTAAACTGCTAGGCTAGATGTTGCTA
+>chrM_2740_3253_1:1:0_1:1:0_6c/1
+GTTGTAATAAGTGTTTTTAGAGAGTAGAATCCATTTATTAATAGAACTGATAAAAGGATAATAGCTATGG
+>chrM_2740_3253_1:1:0_1:1:0_6c/2
+TCTCCCTAAAAGTGTTCTTTATTATTATCCTAACACTCCTCGTCCCCATTCTAATCGCCATAGCCTTCCT
+>chrM_2789_3314_1:0:0_0:1:0_f/1
+TCTAATCGCCATAGCCTTCCTCACATTAGTAGAACGCAAAATCTTAGGGTACATACAACTACGAAAAGGC
+>chrM_2789_3314_1:0:0_0:1:0_f/2
+TGAGATATATCATATTATGGCTATGGGTCAGGCTGGCAGAAGTAATCATATGTGTTCTTGGGTTGTAATA
+>chrM_2945_3338_1:0:0_1:1:0_19/1
+GGCCCGGTTTGTTTCTGCTAGGGTTGAGATATATCATATTATGGCTATGGGTCAGGCTGGCAGACGTAAT
+>chrM_2945_3338_1:0:0_1:1:0_19/2
+AACCTCTATATCCTTATTTATTATAGCACCTACCCTATCACTCACACTAGCATTAAGTCTATGAGTTCCC
+>chrM_3103_3621_2:1:0_1:0:0_71/1
+GATCAGGATGATCCTCAAACTCCAAATCCTCACTAATCGGAGCTTTACGAGCCGTAGCCCAAACAATTTC
+>chrM_3103_3621_2:1:0_1:0:0_71/2
+TTCATAGAAGATGTATAAGTTGATCGTAACGGAAGCGTGGCTAAGATGCTCGGATCCATAGGAATGTTGA
+>chrM_3135_3669_1:2:0_1:0:0_2c/1
+AAGAAATATGTCACATACATAATGCTAGAGTTAGGGGTAGAAAGTTTTTTCATAGAAGATGTATAAGTTG
+>chrM_3135_3669_1:2:0_1:0:0_2c/2
+GTAATCGGAGCTTTACGAGCCGTAGCCCAAACAATTTCATATGATGTAACCATAGCTATTATCCTTTTAT
+>chrM_3169_3659_1:2:0_2:0:0_68/1
+TTTCATATGATGTAACCATAGCTATTATCCTTTTAACAGTTCTATTAATAAATGGATTCTACTCTCTACA
+>chrM_3169_3659_1:2:0_2:0:0_68/2
+TCACATACATCATTCTAGTGTTAGGGGTAGAAAGTTTTTTCATAGAAGATGTATAAGTTGATCGTAACGG
+>chrM_3187_3702_2:1:0_1:1:0_8d/1
+TAGCTATTCTCCTTTTATCAGTTCTATTAATAAATGGATTCTACTCTCTACAAACACTTATTACAACCGA
+>chrM_3187_3702_2:1:0_1:1:0_8d/2
+TGTATGGTGGCACTCCGGCTGTAAAAATTGGTAAAGAAATATGTCACATACATAATGCTAGTGTTAGGGG
+>chrM_3204_3728_0:1:0_2:2:0_4b/1
+TCAGTTCTATTAATAAATGGATTCTACTCTCTACAAACACTTATTACAACCCAAGAACACATATGATTAC
+>chrM_3204_3728_0:1:0_2:2:0_4b/2
+ATTCTTTTATCAGACATATTTCTATATGTCTGGTGGCACTCCCGCTTTAAAAATTGGTAAAGCAATATGT
+>chrM_3289_3819_1:1:0_4:1:0_3c/1
+CCAAAGCCATAATATGATATATCTCAACCCTAGCAGAAACAAACCGGGCCCCCTTCGACCTGACAGAAGG
+>chrM_3289_3819_1:1:0_4:1:0_3c/2
+AGGAGAATTTTGAAATCTTAATTGTAGGTTCAATTCCTAATGTCCTAGAAATAAGCGGGCTTGAACCTCT
+>chrM_3422_3872_1:0:0_2:1:0_3b/1
+CCCTATAGCTTAATTAGCTGACCTTAGTATTAGGATAAGGTGTTTAGGTAGCAAGGAGAATTTTGAATTC
+>chrM_3422_3872_1:0:0_2:1:0_3b/2
+TATAGCAGAGTACACTAACATTATTCTAATAAACGCCCTAACAACTATAATCTTCCTAGGACCCCTATAC
+>chrM_3504_4052_0:0:0_0:2:0_b9/1
+CCAGAACTCTACTCAACTAACTTCATAATAGAAGCTCTACTACTATCATCAACATTCCTATGGATCCGAG
+>chrM_3504_4052_0:0:0_0:2:0_b9/2
+TGTTGATTAGTATGGGGATAATTGCTAGTAGGCTGAATTCCAGGCATACTCATATCAGTATTAGGTTGGT
+>chrM_3542_4113_1:0:0_0:0:0_65/1
+ACTACTATCATCAACATTCCTATGGATCCGAGCATCTTATCGACGCTTCCGTTACGATCAACTTATACAT
+>chrM_3542_4113_1:0:0_0:0:0_65/2
+GAGGCTGTTGCTTGTGTGACGAAGTATTTTGTTGCTGCTTCAGTTGATCGTGGGTTTTTTTTGTTGATTA
+>chrM_3560_4153_2:0:0_1:0:0_4f/1
+CCTATGGATCCGAGCATCTTATGCACGCTTCCGTTACGATCAACTTATACATCTTCTATGAAAAAACATT
+>chrM_3560_4153_2:0:0_1:0:0_4f/2
+TTGTTTATAGTTGAGTACGATGGCCAGGAGGATACTTATTGAGGCTGTTGCTTGTGTGACGAAGTATTTT
+>chrM_3562_4117_0:0:0_3:0:0_51/1
+TATGGATCCGAGCATCTTATCCACGCTTCCGTTACGATCAACTTATACATCTTCTATGAAAAAACTTTCT
+>chrM_3562_4117_0:0:0_3:0:0_51/2
+TCTTGAGGCTGATGCTTGTGTGACGAAGTATTTTGTTGCTTCTTCAGTTGATCGTGGGTTTTTTTTGTTG
+>chrM_3587_4003_0:0:0_1:1:0_a7/1
+TCATATCAGTATTAGGTTGGTGCTGGATATTGTGATTACAGGACCTAATAAGATTGTGAAGTAGATGATG
+>chrM_3587_4003_0:0:0_1:1:0_a7/2
+CTTCCGTTACGATCAACTTATACATCTTCTATGAAAAAACTTTCTACCCCTAACACTAGCATTATGTATG
+>chrM_3799_4278_3:2:0_1:0:0_1d/1
+TTAAGAATTCAAAATTCTGCTAGCTACCAAAACACCTTATCCTGATAGTAAGGTCAGCTAATTAAGCTAT
+>chrM_3799_4278_3:2:0_1:0:0_1d/2
+ATCCCTTGAGTTACTTCTGGTAATCAGAAGTGGAATGGTGCGAGGCCTAGTTTTATGGATAGGGCTATTA
+>chrM_3889_4361_3:0:0_3:0:0_33/1
+TGAGTAGCGGGTAAATTTGACTTAAAATTGAAAGGGGCGCAATTTTTTGTCATGTAAGAAGAATAAGTCC
+>chrM_3889_4361_3:0:0_3:0:0_33/2
+TTTTGTATAAATCCTTCCCGTACTAATAAATCCTATCACCCTTGCCATCATCTACTTCACAATCTTCTTA
+>chrM_3912_4414_3:0:0_2:1:0_91/1
+TCATGCCCCAATGAAAATAGAAGTAAATGCTAGTATTAAAATGATAGTAGAGTTGAGTATCGGGTAAATT
+>chrM_3912_4414_3:0:0_2:1:0_91/2
+TAATAAATCCTATCACCCTTGCCAACATCTAGTTCACAATCTTCTTAGGTCCTGTAATCACAAAATCCAG
+>chrM_3945_4422_1:2:0_0:1:0_64/1
+AGTCCTCCTCATGCCCCAATGAAAATAGAAGTAATTGCTAGTATTAAAATGATAGTAGAGTTGAGTAGCG
+>chrM_3945_4422_1:2:0_0:1:0_64/2
+TCACAATCTTCTTAGGTCCTGTAATCACAATATCCAGGACCAACCTAATACTGATATGAGTATGCCTGGA
+>chrM_3998_4489_2:1:0_1:1:0_be/1
+ATATGAGAAGGCCTGGAATTCCGCCAACTAGCAATTATCCCCATACTAATCAACAAAAAAAACCCACGAT
+>chrM_3998_4489_2:1:0_1:1:0_be/2
+TGCTAATATTCATCCTATGTGGGCAATTGATGAATAGGGTATAATTTTTCGTATTTGTGTTTGGTTAAAT
+>chrM_4007_4449_2:0:0_3:1:0_17/1
+GTCCTGGAATTCAGCCTACTAGCACTTATCCCCATACTAATCAACAAAAAAAACCCACGATCAACTGAAG
+>chrM_4007_4449_2:0:0_3:1:0_17/2
+ATAATTTTTCGTATTTGTGTTTGGTTAAATCGTCCTGATGCCCCTATGAAAATAGAAGTACTTGCTAGTA
+>chrM_4079_4594_1:0:0_3:0:0_28/1
+GATGGTTATAGCGTTATTTAGTATAAGTGCTATGAATCTAGGGGCTGTAAGAATCATATAGATTATGAGG
+>chrM_4079_4594_1:0:0_3:0:0_28/2
+GCAACAAAATACTTCGTCACACAAGCAACAGCCTGAATAATTATCCTCCTGGCCATCGTACTCAACTATA
+>chrM_4139_4621_1:0:0_4:0:0_7e/1
+CTCAACTATAAACAACTAGGAACATGAATATTTCAACAACAAACAAACTGTCTTATCCTTAACATAACAT
+>chrM_4139_4621_1:0:0_4:0:0_7e/2
+TTTATTTCATAGAAGTGCGATTGAGTTGATGGATATAGATTTATTTAGTATAAGTGCTAAGAATATAGGG
+>chrM_4140_4598_2:0:0_2:0:0_12/1
+AGATGATGGTTATAGAGTTATTTAGTATAAGTGCTATGAATAAAGGGGCTGTAAGAATAATATAGATTAT
+>chrM_4140_4598_2:0:0_2:0:0_12/2
+TCAACTATAAACAACTAGGAACATGAATATTTCAACAAGAAACAAACGGTCTTATCCTTAACATACCATT
+>chrM_4200_4733_4:0:0_0:1:0_6f/1
+ACATCAGATTAATAGCCCTAACCATAAAACTAGGCCTCGCCCCATTCCACTACTGATTACCAGAAGTAAC
+>chrM_4200_4733_4:0:0_0:1:0_6f/2
+GGTTTTTTATAAGTTCTGTGATGATAATTCATTTTGGTAAGAATCCTGTTAGTGGTGGAAGGCCTCCTAG
+>chrM_4256_4777_1:0:0_2:2:0_66/1
+TTACCAGAAGTAACTCAAGGGATCCCACTGCACATAGGACTTATTCTTGTTACATGACAAAAAATTGCTC
+>chrM_4256_4777_1:0:0_2:2:0_66/2
+TAGTAGAGCTACTATTGCTATGAGTGTTGCAATAATTAGACAGTGGTTTTTTATAAGTTCTGTGATGATA
+>chrM_4306_4893_3:0:0_3:1:0_83/1
+GAAAATATTAGGTTATGTTTAGTTTTTGTTTGGTGAGTTATTAATTTTGAGTTATTGTTGGTTGGCAATA
+>chrM_4306_4893_3:0:0_3:1:0_83/2
+TACATGACAAAAAATTGCTCCCCTATCAATTTTAAATCAAATTTACCCGCTACTCAACTGAACTATCATT
+>chrM_4354_4860_0:1:0_1:0:1_b1/1
+GCTACTCAACTCTACTATCATTTTAATACTAGCAATTACTTCTATTTTCATAGGGGCATGAGGAGGATTT
+>chrM_4354_4860_0:1:0_1:0:1_b1/2
+TGAGTTATTATTTTTGAGTTAATGTTGGTTGGAAATATTGTTAGTGAAGTGGAATAAATTAGGCGCAAGT
+>chrM_4383_4859_1:1:0_0:0:1_90/1
+TAGCAATTACTTCTATTTTCATAGGGGCATTAGGAGGATTTAACCAAACACAAATACGAAAAATTATAGC
+>chrM_4383_4859_1:1:0_0:0:1_90/2
+GAGTTATTATTTTTGAGTTATTGTTGGTTGGAAATATTGTTAGTGAAGTGGAATAAATTAGGCGCAAGTA
+>chrM_4425_4987_2:0:0_2:3:0_35/1
+GCTTTGATTGCTCGCGGACTGGTAAATCCTAACCTTCTAGGTAATTAGTTGGGGGGCTAGGGGTAGGGTT
+>chrM_4425_4987_2:0:0_2:3:0_35/2
+ACCAAACACAAATACGACAAATTCTAGCCTATTCATCAATTGCCCACATAGGATGAATATTAGCAATTCT
+>chrM_4427_4991_1:0:0_3:3:0_7/1
+CAAACACAAATACGAAAAATTATAGCCTATTCATCAATTGCCCACCTAGGATGAATATTAGCAATTCTTC
+>chrM_4427_4991_1:0:0_3:3:0_7/2
+TATTGCTTTGATGGGTCGCGGACTGGTATATCCTAACCTTCTAGGTAATTAGTTGGGGGGCTAGGGGTAG
+>chrM_4480_4986_1:1:0_2:3:0_98/1
+AAAATTAGCAATTCTTCCTTACAACCCATCCCTCACTCTACTCAACCTCATAATGTATATTATTCTTACA
+>chrM_4480_4986_1:1:0_2:3:0_98/2
+CTTTGATGGCTCGCTGACTGGTAAATCCTAACCTTCTAGGTAATTAGTTGGGGGGCTAGGGGTAGGGTTA
+>chrM_4484_4978_1:2:0_1:2:0_3d/1
+GCTCGCGGACTGGTATATCCTAACCTTCTAGGTAATTAGTTGGGGGGCTCGGGGTAGGGTTATTGTGCTT
+>chrM_4484_4978_1:2:0_1:2:0_3d/2
+TTAGCAATTCTTCCTTAGAACCCATCCCTCACTCTACTCAACCTCATAATGTATATTATTCTTACATCCC
+>chrM_4491_4937_1:0:0_1:1:0_5e/1
+TTCTTCCTTACAACCCATCCCTCACTCAACTCAACCTCATAATCTATATTATTCTTACAGCCCCTATATT
+>chrM_4491_4937_1:0:0_1:1:0_5e/2
+GGGGGGCTAGGGGTAGGGTTATTGTGCTTATGATAGCTAGGGTGGAAAATATTAGGTTAGGTATAGTTTT
+>chrM_4627_5166_2:0:0_2:1:0_13/1
+AGCAATACTACCTATAATCTCAGTGATATTACTATCCCTAGGAGGCCTTCCACCACTAACAGGATTCTTA
+>chrM_4627_5166_2:0:0_2:1:0_13/2
+GTATAAGTAGATTGAAGCCAGTAATAGGGTATTTAGCTGTTACCTAAATTTTCGTCGGTTTAATTCCTGC
+>chrM_4810_5337_0:1:0_0:3:0_9c/1
+CACTTCACTAACAATATTTCCAACCAACAATAACTCAAAAATAATAACTCACCAAACAAAAACTAAACCT
+>chrM_4810_5337_0:1:0_0:3:0_9c/2
+TAATCAACATAGGTAAAATGGCTGAGTAAGCATTAGACTGTAATTCTAAACACAGAGGTTTAAAACCTCT
+>chrM_4842_5304_1:1:0_0:2:0_41/1
+CCTCAAAAATAATAACTCACCAAACAAAAACTAAACCTAACCTAATATTTTCCACCCTAGCTATCATAAG
+>chrM_4842_5304_1:1:0_0:2:0_41/2
+TAGACTGTAATTCTAAACACAGAGGTTTAAAACCTCTTTTTACCAGAGGTCTTAAGGTGATATTCATGTC
+>chrM_4918_5435_0:2:0_1:1:0_74/1
+TAAAATACTTAGTGCAGTACCCACTATTCCCGCTCAGGCTCCGAATAGTAGAAAGAGGGTTCGGATATCT
+>chrM_4918_5435_0:2:0_1:1:0_74/2
+AACCCTACCCCTAGCCCCCCAACTAATTACCTAGAAGGTTAGGATATACCAGTCCGCGAGCCTTCAAAGC
+>chrM_5340_5854_0:1:0_0:0:0_a/1
+ATGGCTGGGGGTTTCATGTTGATAATAGTGGTAATAAAATTAATTGCACCTAAAATAGATGACACTCCAG
+>chrM_5340_5854_0:1:0_0:0:0_a/2
+CGTTGATTAGTCTCAACCAATCACAAAGATATCGGAACCCTCTATCTACTATTCGGAGCCTGAGCGGGAA
+>chrM_5403_5984_0:0:0_1:2:0_ab/1
+GAAAGTTTTGTTTAGGTTGCGGTGTGTTAGTAGTATAGTAATGCCTGCGGCTAACACTGGTAGTGATAAT
+>chrM_5403_5984_0:0:0_1:2:0_ab/2
+GCGGGAATAGTGGGTACTGCACTAAGTATTTTAATTCGAGCAGAATTAGGTCAACCAGGTGCACTTTTAG
+>chrM_5451_5933_2:1:0_1:1:0_57/1
+TAACACTTGTAGTGATAATAGGAGCAGTACGGCTGTAATAAGTACGGATCAGACAAATAGTGGAGTTTGA
+>chrM_5451_5933_2:1:0_1:1:0_57/2
+GGTCAACCAGGTGCACTTTTAGGAGATGACCAAAAATACCATGTTATCGTAACTGCCCATGCTTTTGTTA
+>chrM_5499_5905_2:3:0_1:0:0_2f/1
+ACGGGTGTAATAAGTACGGATCAGACAAATAGTGGAGTTTGATACTGTGTTATGGCTGGGGGTTTCATGT
+>chrM_5499_5905_2:3:0_1:0:0_2f/2
+GTAACTGCCCATGCTTTTGTAATAATTTTCTTCCTAGTAATACCAATAATAATTGGGGGCATTGGCAACT
+>chrM_5540_5928_2:2:0_1:0:0_2d/1
+ACCAATAATAATTGGTGGCTTTGGCAACTGACTTGTCCCACTAATAATCGTAGCCCCAGATATAGCATTC
+>chrM_5540_5928_2:2:0_1:0:0_2d/2
+CTGGTAGTGATAATAGGAGCAGTACGGCTGTAATAAGTACGGATCCGACAAATAGTGGAGTTTGATACTG
+>chrM_5583_6032_2:0:0_3:1:0_2b/1
+ATACTCGGAGCCCCAGATATAGCATTCCCACGAATAAATAATATAAGTTTTTGAGTCCTACCACCATCAT
+>chrM_5583_6032_2:0:0_3:1:0_2b/2
+GAACAGATGCTGGTAGAGAATTGTGTCCCCTCCTCCCGCGGGATCACAGAAAGTTGTGTTTAGGTTGCTG
+>chrM_5615_6110_2:1:0_0:3:0_14/1
+GTAGTAAGTAACTACATGTGAAATAATTCCAAATCCTGGGAGGATAAGAAAAAAAACTTCTGGGTGCCCC
+>chrM_5615_6110_2:1:0_0:3:0_14/2
+AATAACTAATATAAGTTTTTGACTCCTACCACCATCCTTTCTCCTTCTCCTAGCATCATCAATAGTAGAG
+>chrM_5645_6067_1:2:0_1:3:0_1c/1
+ACCATCATTTCTCCTTCTCCTAGCATCATCAATAGTAGAGGCAGGAGTAGGAACATGATGAACAGTCTAC
+>chrM_5645_6067_1:2:0_1:3:0_1c/2
+ATAAGAAAAAAAACTTCTGGGTGCCCCAAGAATCAGAACAGATGCAGGTAGAGAATTGGGTCCCCTCCTC
+>chrM_5770_6257_3:0:0_1:2:0_46/1
+TCTCCCTTCATTTAGCAGGAGTGTCATCTATTTTAGGTGCAATTACTTTTATTACCACTATTCTCAACAT
+>chrM_5770_6257_3:0:0_1:2:0_46/2
+TATAGTGGCTGATGTAAAGTAAGCTCGTGTGTCTACATATAATCCTCCTGTGAATAAGTGGTGGGCTCAT
+>chrM_5831_6292_0:0:0_1:0:0_15/1
+CTAAATACTTTGACACCGGTAGGACTTGCGATAATTATAGTGGCTGATGTAAAGTAAGCTCGTGTGTCTA
+>chrM_5831_6292_0:0:0_1:0:0_15/2
+TATCAACATGAAACCCCCAGCCATAACACAGTATCAAACTCCACTATTTGTCTGATCCGTACTTATTACA
+>chrM_5910_6386_0:2:0_1:1:0_1e/1
+TAGACCACCAACTGTAAATAAGAAAATAAAGCCTAAGGCTCATAGTATAGCTGGAGATCAGTTAAAATTA
+>chrM_5910_6386_0:2:0_1:1:0_1e/2
+CTCCTATTATCACTACCAGTGTTAGCCGCAGGCATTACTATACTACTAACACACCGCAACCTAAACACAA
+>chrM_5930_6421_2:3:0_1:1:0_2e/1
+GTTAGCCGCAGGCATTACTATACTACTACCAGACCGCAACCTAAACACAACTTTCTTTGATCCCGCGGGA
+>chrM_5930_6421_2:3:0_1:1:0_2e/2
+ATGTCAAGGGATGAGTTGGATAAAGCAATTCCGGTTAGACCACCAACTGTAAATAAGAAACTAAAGCCTA
+>chrM_5959_6526_0:2:0_1:2:0_c5/1
+AATAATGTGAATCAGTGAACAAATCCTGCTATGATAGCAAACACTCCTCCCATTGATGGAACATAGTGGA
+>chrM_5959_6526_0:2:0_1:2:0_c5/2
+CACACCGCAACCTAAACACAACTTTCTTTGATCCCGCGGGAGGAGGGGACCCAATTCTCTACCAGCATCT
+>chrM_6074_6685_2:0:0_0:2:0_a3/1
+AGGATTTGGAATTATTTCACATGTAGTTACTTACTACTCCGGCAACAAAGAACCTTTCGGCTATATAGGA
+>chrM_6074_6685_2:0:0_0:2:0_a3/2
+ACAGTGTTTCATGTGGTGTAAGCATCTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGCCCAGTC
+>chrM_6138_6598_0:0:0_1:2:0_6e/1
+GTTATGTTCACTCCTACGAATATGAAGTCGAAGTGGGCTTTTGCTCATGTGTCATCTAGGGTGAAGCCTG
+>chrM_6138_6598_0:0:0_1:2:0_6e/2
+ATAGGAATAGTATGAGCAATAATGTCTATTGGCTTTCTAGGCTTTATTGTATGAGCCCACCACATATTCA
+>chrM_6228_6791_1:0:0_0:0:0_ae/1
+ACACGAGCTTACTTTACATCAGCCACTATAATTATCGCAATTCCTACCGGTGTCAAAGTATTAAGCTGAC
+>chrM_6228_6791_1:0:0_0:0:0_ae/2
+AGCATACGATACTGATATTACTTCTCGTTTTGAAGCAAAGGCCTCTCAAATTATAAAGATCATGATGAGA
+>chrM_6246_6734_0:0:0_1:0:0_69/1
+TCAGCCACTATAATTATCGCAATTCCTACCGGTGTCAAAGTATTTAGCTGACTTGCAACCCTACACGGAG
+>chrM_6246_6734_0:0:0_1:0:0_69/2
+GATCATGATGAGAACAGCTGTTAGTGAAATAAATGATCGTATAGAAGAGACAGTGTTTCATGTGGTGTAA
+>chrM_6261_6802_2:0:0_2:0:0_87/1
+ATGGCAATTCCTACCGGAGTCAAAGTATTTAGCTGACTTGCAACCCTACACGGAGGTAATATTAAATGAT
+>chrM_6261_6802_2:0:0_2:0:0_87/2
+AAATTTGTTGAAGCATACGATACTGATCTTACTTCTCGTTTTGAAGCAAAGGCGTCTCAAATTATAAAGA
+>chrM_6356_6909_2:1:0_4:0:0_72/1
+CTTTATTTTCTTATTTACCGTTGGTGGTCTAACCGTAATTGCTTTATCCAACTCATCCCTTGACATCGTG
+>chrM_6356_6909_2:1:0_4:0:0_72/2
+ATGAAAGCAATTTTAGGTGGTTCGATTGCTTCCTTTCTTATTTTACTTTTACATAGGTTGGTTCCTCGAA
+>chrM_6366_6887_1:1:0_3:0:0_85/1
+TTATTTACAGTTGGTGGTCTAACCGTAATTGCTTTATCCAACTCATCCCTTGACATCGTGCTTCACGATA
+>chrM_6366_6887_1:1:0_3:0:0_85/2
+CGATTCCTTCCTTTCTTAATTTACTATTACATAGGTTGGTTCCTCGAATGTGTGATATTGTGGAGGGCAG
+>chrM_6367_6804_0:1:0_1:1:0_5d/1
+CTAAATTTGTTGAATCATACGATACTGATATTACTTATCGTTTTGAAGCAAAGGCCTCTCAAATTATAAA
+>chrM_6367_6804_0:1:0_1:1:0_5d/2
+TATTTACAGTTGGTGGTCTAACCGGAATTGCTTTATCCAACTCATCCCTTGACATCGTGCTTCACGATAC
+>chrM_6458_6985_2:2:0_1:0:0_b5/1
+CCACTATGTTCCATCAATGGGAGGAGTGTTTGCAATCATAGCAGGATTTGTTCACAGATTCCCATTATTT
+>chrM_6458_6985_2:2:0_1:0:0_b5/2
+ATTTAACTTTGACAAAGTTATGTAATTGATTTTACTAATATCTTATTGAGAAAGACATATATGATATGAG
+>chrM_6510_7029_2:1:0_1:0:0_16/1
+CACTGATTCCCATTATTTTCCGGGTTCACCCTAGATGACACATGAGCAAAAGCCCACTTCGCCTTCATAT
+>chrM_6510_7029_2:1:0_1:0:0_16/2
+TGGCATGGGTAGGCCATATAAGATATATAGATTATTGATCTATAATTTAACTTTGACAAAGTTATGTAAT
+>chrM_6514_6987_2:1:0_1:0:0_8/1
+TAATTTAACTTTGACAAAGTTATGTAATTGATTTTACTAATATCTTATTGAGAAAGACATATCGGATATG
+>chrM_6514_6987_2:1:0_1:0:0_8/2
+GATACCCATTATTTTCAGGCTTCACCCTAGATGACACAAGAGCAAAAGCCCACTTCGCCTTCATATTCGT
+>chrM_6719_7233_1:0:0_4:1:0_b0/1
+TGTTCTCATCATGATCTTTATAATTTGAGAGGCCTTTGCTTCAAAACGATAAGTAATATCAGTATCGTAT
+>chrM_6719_7233_1:0:0_4:1:0_b0/2
+ATAAGGATTACAGCTGGTAGCCTAGTTCAAATGGTTACAACTACTAGTGCATCTATTGTGCTTGTATGTG
+>chrM_6720_7201_2:1:0_1:0:0_b8/1
+TTTCTCATCATGATCTTTATAATTAGAGAGGCCTTTGCTTCAAAACGATAAGTAATATCAGTATCGTATG
+>chrM_6720_7201_2:1:0_1:0:0_b8/2
+GGTTTCAACTTCTTGTGCATCTATTGTGCTTGTATGTGTTAGTTTTGTTTTTAATATTAGCGAGATGATA
+>chrM_6845_7289_0:0:0_4:0:0_5c/1
+GGAACCAACCTATGTAAAAGTAAAATAAGAAAGGAAGGAATCGAACCCCCTAAAATTGGTTTCAAGCCAA
+>chrM_6845_7289_0:0:0_4:0:0_5c/2
+GGTTGTTGATTTCGTCTATTATATATAGAATGCGTAGATAGGTGAGAGCCATTATGATAAGGATTACATC
+>chrM_6864_7309_1:0:0_0:0:0_a6/1
+GTAAAATAAGAAAGGAAGGAATCGAACCCCCTAAAATTGGTTTCAAGCCAATCTCATATCCTATCTGTCT
+>chrM_6864_7309_1:0:0_0:0:0_a6/2
+GGTTTTAACGGTTAATACGGGGTTGTTGATTTCGTCTATTATATATAGAATGCGTAGAGAGGGGAGAGCA
+>chrM_6938_7424_2:0:0_1:0:0_b4/1
+CTTCTAGCAGTCGTAGTTCACCAGGTTTTCGGTCGTTTGTTGGGATTATATATGAATCAAAGCATAGGTC
+>chrM_6938_7424_2:0:0_1:0:0_b4/2
+CAATAAGATATTCGTAAAATCAATTACATAACTTTGTCAAAGTTAAATTATAGATCAATAATCTAAATAT
+>chrM_7046_7557_1:0:0_2:2:1_c6/1
+GCCACATCCCCTATTATAGAAGAGCTAATAAATTTCCATGATCACACACTAATAATTGTATTCCTAATTA
+>chrM_7046_7557_1:0:0_2:2:1_c6/2
+GCTTGATTTATTCGGCCTGGGTTGCATCAGTTTAAAGTCCTAGGGAGGGGACTGCTCGTGAGTGGAGGAC
+>chrM_7156_7672_2:1:0_0:0:0_53/1
+AAACCTAACACATACAAGCACAATAGATGCACTAGAAGTTGAAACCATTTGAACTATTGTACCAGCTGTA
+>chrM_7156_7672_2:1:0_0:0:0_53/2
+TTCGAAATATTTTAGTGGAACCATTTCTAGGACAATGGGCATAAAGCTATGGTTAGATCCACAAATTTCA
+>chrM_7188_7644_1:1:0_2:1:0_a9/1
+AGGACAATGGGCATAAAGCTATGGTTCGATCCACAAATTTCAGAGCATTGGCCATAGAATAACCCTGGTC
+>chrM_7188_7644_1:1:0_2:1:0_a9/2
+TAGAAGTTGAAACCATTTGAACTATTCTAGCAGCTGTAATCCTTATCATAATTGCTCTCCCCTCTCTACG
+>chrM_7223_7762_2:1:0_1:1:0_a1/1
+ACAATGGAGATATTAAGGTCTCTAACTTTAACTTAAAAGGTTAACGCTCTTAGCTTCATAGTGAAATTAA
+>chrM_7223_7762_2:1:0_1:1:0_a1/2
+GTAATCCTTCTCATAATTGCTCTCCCCTCTCAACGCATTCTATATATAATAGACGAAATCAACAACCCCT
+>chrM_7258_7724_0:1:0_0:0:0_10/1
+CATTCTATATATAATAGACGAAATCAACAACCCCTTATTAACCGTTAAAACCATAGGGCACCAATGATAC
+>chrM_7258_7724_0:1:0_0:0:0_10/2
+GGTTAACGCTCTTAGCTTCATAGTGAAATTAAATTATTGAAGCAGATCAGTTTTCGAAATATTTTAGTGG
+>chrM_7339_7816_1:0:0_3:4:0_43/1
+AATTGATGAGATAATTGTGATAATTCATGTTGAAGTATCTAGTTGTGGGTTAGCACAATGGAGATTTTAA
+>chrM_7339_7816_1:0:0_3:4:0_43/2
+ATATACTGACTATGAAGACCTATGCTTTGATTCATATATAATCCCAACCAACGACCTAAAACCTGGTGAA
+>chrM_7358_7894_0:0:0_1:0:1_bc/1
+TTTTAGGATTTTGGTGAAGGTGCCAGTGGGAATGTTTGTGATGAGACTTTTAGTTGAAATAAGATAAATA
+>chrM_7358_7894_0:0:0_1:0:1_bc/2
+CTATGCTTTGATTCATATATAATCCCAACAAACGACCTAAAACCTGGTGAACTACGACTGCTAGAAGTTG
+>chrM_7550_8033_2:2:0_0:0:0_26/1
+AATCAAGCAACAGCAACATCCAACGGACCCGGGTTATTCTATGGCCAATGCTCTGAAATTTGTGGATCTA
+>chrM_7550_8033_2:2:0_0:0:0_26/2
+CGTTTTGAGGATGGGAATAGGATTGAAGGAAATATAATGATGGCTACAACGATTGGGAATCCTATTATTG
+>chrM_7668_8147_1:1:1_1:2:1_6b/1
+TCGAAAACTGATCTGCTTCAATCATTTAATTTCACTATGAAGCTAAGAAGCGTTAACCTTTTAAGTTAAA
+>chrM_7668_8147_1:1:1_1:2:1_6b/2
+GACACAATTATTAGGGTTCATGTTCGCACTTTTGGTGGTGGATTAGCATTATTTGTTTGATAATAAGTTT
+>chrM_7728_8283_1:4:0_2:0:0_1b/1
+GTGTCGGAAGCCTGTAATTACGGCTCCATCTCCTAGTGGAATGGCTATACTTAGATTTATGGATAGTTGG
+>chrM_7728_8283_1:4:0_2:0:0_1b/2
+TAAGTTAAAGTTAGAGACCTAAAAATCTCCATTGTGCTAAGCCACAACTAGATACATCAACATGAATTAT
+>chrM_7785_8278_5:1:0_2:0:0_99/1
+GGAAGCCTGTAATTACGGCTGCAGCTCATAGTGGAATGGCTATACTTAGATTTATGGATATTTGGGTAGT
+>chrM_7785_8278_5:1:0_2:0:0_99/2
+CAACATGAATTATCCCAATTATCTCATGAATAAATACCCTATTTATCATATTTCAACTAAAAGTCACATC
+>chrM_7788_8291_0:0:0_3:1:0_86/1
+TTAAGTTTGTGTCGGAAGCCTGTAATTAGGGCTCCAGCTCATAGGGGAATGTCTATACTTAGATTTATGG
+>chrM_7788_8291_0:0:0_3:1:0_86/2
+CATGATTTATCACAATTATCTCATCAATAATTACCCTATTTATCTTATTTCAACTAAAAGTCTCATCACA
+>chrM_7835_8385_1:0:1_2:0:0_c7/1
+TGGTAGAATAAATAGGCTAATTGTTTCAATAATAATAATTATTGGAATTAGTGAAATTGGAGTTCCTTGT
+>chrM_7835_8385_1:0:1_2:0:0_c7/2
+TTTCAACTAAAAGTCTCATCACAAACATTCCCACTGGCCCCTTCACCAAAATCCTAACAACCATAAAAGT
+>chrM_7872_8415_2:0:1_1:0:0_1a/1
+GTTAGCTGTAAGCCGGACTGCTAATGCCATTGGTTGAATAAATAGGCTAATTGTTTCAATCATAATAAGT
+>chrM_7872_8415_2:0:1_1:0:0_1a/2
+CACCTTCACGAAAATCCTAACAACGATAAAAGTAAAAACCCCTTGAGAATTAAAATGAACGAAAATCTAT
+>chrM_7939_8482_1:1:0_2:0:0_25/1
+GGCTAATATTTATTAATACTAGAGTAGCTCCTCCGATTATGTGTATTAATAAGTGTCCTGCAGAAATGTT
+>chrM_7939_8482_1:1:0_2:0:0_25/2
+CTATTTACCTCATTCATTACCCCAACAATAATAGGAATCCCAATCGTTGTAGCCATCATTATATTTCCTT
+>chrM_7964_8497_0:0:0_2:0:0_8c/1
+CAATAATAGGATTCCCAATCGTTGTAGCCATCATTATATTTCCTTCAATCCTATTCCCATCCTCAAAACG
+>chrM_7964_8497_0:0:0_2:0:0_8c/2
+TGGTAGCTGTTGGTGGGCTAATATTTATTAATACTAGAGTCGCTCCTCCGATTAGGTTTATTAATAAGTG
+>chrM_8325_8781_1:0:0_2:0:0_9d/1
+TCCAATTTCACTAATTCCAATACTTATTATAATTGAAACAATTAGCCTATTTATTCAACCAATGGCATTA
+>chrM_8325_8781_1:0:0_2:0:0_9d/2
+GTCATCATTGATATATTGTGATGATATTGGTGAGTAGGCCAAGGGTTAATAGTGTCATTGAATTATAGTG
+>chrM_8419_8906_1:0:0_3:0:0_9f/1
+CGGTGAGAAGAATGCTGCAAAGAAAAATACTTCCGAGACGATGAATAGAATTATACCATATCGTAGTCCT
+>chrM_8419_8906_1:0:0_3:0:0_9f/2
+ACTGCAGGACACTTATTAATACACCTAATCGGAGGCGCTACTCTAGTATTAATAAATATTAGCCCACCAA
+>chrM_8733_9211_0:0:0_0:0:0_47/1
+TTAACCCTTGGCCTACTCACCAATATCCTCACAATATATCAATGATGACGAGACGTAATTCGTGAAGGAA
+>chrM_8733_9211_0:0:0_0:0:0_47/2
+CCAGTAGCCATGAAGAATGTAGAACCATAGATACCATCTGAAATGGAGAATGATGTTTCAAAGTATTCTG
+>chrM_8761_9187_1:1:0_0:0:0_ba/1
+CCATAGATACCATCTGAAATGGAGAATGATGTTTCAAAGTATTCTGAAGCTTGGAGGATGGTGAAGTAAA
+>chrM_8761_9187_1:1:0_0:0:0_ba/2
+TCACAATATATCAATGATGACGAGACGTAATTCGTGAAGGAACCTAACAAGGCCACCACACTCCTATAGT
+>chrM_8781_9305_4:1:0_3:0:1_3e/1
+TAAGTGATGTTTTGATGTGCAGTGAAATTTTAGTTTTCTAGTAGGCAAACAATAAGGAATGTTGATCCAA
+>chrM_8781_9305_4:1:0_3:0:1_3e/2
+CGATACGTAATTCGTGAAGTAACCTAACAATGCCACCACACTCCTATAGTACAAAAAGGACTACGATATG
+>chrM_8794_9257_1:1:0_1:0:0_79/1
+AAGAATAAGGAATGTTGATCCAATAATTACATGGAGTCCATGGAATCCAGTAGCCATGAAGAATGTAGAA
+>chrM_8794_9257_1:1:0_1:0:0_79/2
+GTGAAGGAACCTAACAAGGCCACCACACTCCTCTTGTACAAAAAGGACTACGATATGGTATAATTCTATT
+>chrM_8863_9244_0:0:0_1:0:0_92/1
+GTTGATCCAATAATTACATGGAGTCCATGGAATCCAGTAGCCATGAAGAATGTAGCACCATAGATACCAT
+>chrM_8863_9244_0:0:0_1:0:0_92/2
+TCATCGTCTCGGAAGTATTTTTCTTTGCAGGATTCTTCTGAGCGTTCTATCATTCTAGCCTCGTACCAAC
+>chrM_8886_9293_2:1:0_0:0:1_a2/1
+TTTGGAGGATTCTTCTGAGCGTACTATCATTATAGCCTCGTACCAACACATGATCTAGGAGGCTGCTGAC
+>chrM_8886_9293_2:1:0_0:0:1_a2/2
+TGATGTGAAGTGAAATTTTAGTTGTCTAGTAGGCAAACAATAAGGAATGTTGATCCAATAATTACATGGA
+>chrM_9031_9522_3:3:0_2:0:0_84/1
+ATGGAACTAGAATTAGCGTTAGGGATAATAAAATATTAATGAAGATAACAGTGTACATGTTAATTACTCT
+>chrM_9031_9522_3:3:0_2:0:0_84/2
+TTTCAATTACATGCCCTCATCATAGCAATATAGAAGGTAAACGAAACCACATAAATCAAGCCCTCCTCAT
+>chrM_9032_9593_1:2:1_1:0:0_b2/1
+TTCATTACATGACCTCATTATAGCCTTATAGAAGGTAAACGAAACCACATAAAACAAGCCCTACTAATTA
+>chrM_9032_9593_1:2:1_1:0:0_b2/2
+GCTTGTAGGGTCGAATCCGCATTCATATGGATTTGCTTTTTCAGAGTACAGATTTATTTGGGGGAGTCAG
+>chrM_9038_9471_1:3:0_1:1:0_8a/1
+TGTACAGGTTAATTACTCTGTTCTGGGTTTATTCAGAATCTACTAATTGGAAGTCAGTTCTATTAATTAT
+>chrM_9038_9471_1:3:0_1:1:0_8a/2
+TACATGACGTCATCATAGCAATATAGAAGGTAAACGAAACCACATAAATCAAGCCCTACTAATTACCATT
+>chrM_9120_9714_1:1:0_0:1:0_88/1
+TACTTCACCATCCTCCAAGCTTCAGAATACATTGAAACACCATTCTCCATTTCAGATGGTATCTATGGTT
+>chrM_9120_9714_1:1:0_0:1:0_88/2
+TAGAGGTTTTAATTGTTTGAATTGCTCATGGTAGTGGAAGTAGAAGAGCAATTTTTAGGTCAAATAATAG
+>chrM_9142_9548_1:1:0_1:2:0_77/1
+CAGAATACTTTGAAACACCATTCTCGATTTCAGATGGTATCTATGGTTCTACATTCTTCATGGCTACTGG
+>chrM_9142_9548_1:1:0_1:2:0_77/2
+GTACAGATTTATTTGGGGGAGTCAGAAAGCAACTAGAATTAGCGTTAGGGATAAAGAAATATTAATGAAG
+>chrM_9150_9818_1:1:0_1:1:0_bf/1
+TTTGAAACACCATTCTCCATTTCAGATGGTATCTAAGGTTCTACATTCTTCATGGCTACTGGATTCCATG
+>chrM_9150_9818_1:1:0_1:1:0_bf/2
+ACTAATTACGATTCACTCTGTTCATTCTAATCCTTTTTGTGTTCATTCATATGCTAGGCCTAGAGATAGA
+>chrM_9222_9781_2:0:1_1:0:0_23/1
+CTCCATGTAATTATTGGATCAACATTCCTTCTAGTTTGCCTACTAGACAACTAAAATTTCACTTCACATC
+>chrM_9222_9781_2:0:1_1:0:0_23/2
+TGTGTTCATTCATATGCTAGGCCTAGAGATAGAATTGTGACTAGACTAAAGGCTATAATTATTATAGTAG
+>chrM_9409_9920_3:1:0_1:0:0_d/1
+GATAGAGAGAAGGCTATGGTGAGGTTGAAGAAGGTAGATGGCATATTGGTAATTATGAACATCATCATAA
+>chrM_9409_9920_3:1:0_1:0:0_d/2
+ATATCACTGACTTCCAATTAGTAGATTCTGAATAAACCCAGCACAGAGTAATTAACCTGTAGACTGTTAT
+>chrM_9496_9991_0:0:0_3:1:0_80/1
+CTAATACTATGCCTTCCAGGCATAGTAAAGTGGATATTAGGTGAGAGCGAAATCTAAGTGTTCCTAGAAG
+>chrM_9496_9991_0:0:0_3:1:0_80/2
+TATCCCTAACGCTAATTCTAGTTGCATTCTGACTCCCCCAAATAAATCTGTACTCAGAAAAAGCAAATCC
+>chrM_9505_10155_3:0:0_1:0:0_9a/1
+CGCTACTTCTAGTTGCATTCTGACTCCCCCAAATACATCTGTCCTCAGAAAAAGCAAATCCATATGAATG
+>chrM_9505_10155_3:0:0_1:0:0_9a/2
+GAGATTTTGGACGTAATCTGTTCCGAACGTGTTTGAAACTTTTACTAGTAGGGCTAGTCCTACAGCTGCT
+>chrM_9647_10116_2:0:0_1:2:0_2a/1
+ATTATTTGACCTAGCAATTGCTCTTCTACTTCCACTACCATGAGCAATTCAAACAATTAAAACCTGTACT
+>chrM_9647_10116_2:0:0_1:2:0_2a/2
+TTTTACTAGTAGGGCTAGTCCTACAGCTGCTTCTCAGGCTGCGAAAACTACGATGGTGATGGGGAATGGT
+>chrM_9735_10262_1:0:0_1:2:0_40/1
+AAAACTATATGAGGTTACGTTTGTGCAGGTATTTTTAGGGCTTGATAGTCAGGTTAGTGGGAGTAGCATT
+>chrM_9735_10262_1:0:0_1:2:0_40/2
+ATTCTAGTCACAATTCTATCTCTAGGCCTAGCATATGAATGAACACAAAAAGGATTAGAATGAACAGATT
+>chrM_9897_10466_3:1:0_1:0:2_1/1
+CCTCACCATAGCCTTCTCACTATCACTACTAGGAACACTTATATTTCGCTCACACCTCATATCCACATTA
+>chrM_9897_10466_3:1:0_1:0:2_1/2
+GATTAGTCTTGAGATGTAGAGTTTTTGTAGTACGTTATTATCTTTTTTTAGGTGGTTGGCTAGCTATTAA
+>chrM_9907_10368_2:0:0_1:0:0_c2/1
+GCCTTCTCACTATCCCTTCTAGGGACACTTATATTTCGCTCTCACCTAATATCCAGATTACTATGCCTGG
+>chrM_9907_10368_2:0:0_1:0:0_c2/2
+AAATCATTAATGGTGTGGATAGGGGGTCTGAGGAGAATATATTTGAAAAGTTTTTATAATTTTCGTCGGT
+>chrM_9910_10411_1:1:0_0:1:2_bb/1
+TTCTCACTATCACTTCTAGGAACACTTATATTTCGCTCTCACCTAATATCCACATTACTATGCCAGGAAG
+>chrM_9910_10411_1:1:0_0:1:2_bb/2
+TTGGCTAGCTATTAATATTAGTGGCAGTAATCAGGTTGTTAAAATAATTAATGGTGTGGATAGGGGGTCT
+>chrM_10023_10620_2:2:0_3:0:0_4/1
+AAACTCCAACTCCATAAGCTCCATACCATTCCCCATCACGATCGTAGTTATCGCAGCCTGCGAAGCAGCT
+>chrM_10023_10620_2:2:0_3:0:0_4/2
+AAAATAGGAAATAAATCCCTGCGTTAAGGCGTTCAGTATGGTTCCCTCATCGGGTAATAATAATAAGTGA
+>chrM_10106_10577_3:1:0_2:0:0_5b/1
+AACTAGTAAAAGTTTCAAACACGAACGGAACAGATTACGTCCAAAATCTCAACCTGCTACAATGGTAAAA
+>chrM_10106_10577_3:1:0_2:0:0_5b/2
+CCCTCATCGGGTAATAATAATAAGAGTTGGGATTACGGTTGCTTCAAATAAAATATAAAATATAATTAGT
+>chrM_10193_10658_0:2:0_1:0:0_b6/1
+AATGCTACTCCCACTAACCTGACTATCAAGCCCTAAAAAAACCTGCACAAACGTAACCTCATATAGTTTT
+>chrM_10193_10658_0:2:0_1:0:0_b6/2
+GAGGGCAATTAGCAGTGGAATAGAACCGATTAGGGTATAAAATAGGAAATAAATCCCTGCGTTTAGGCGA
+>chrM_10203_10663_1:0:0_1:0:0_42/1
+AAGATGAGGGCAATTAGCAGTGGAATAGAACCGATTCGGGTATAAAATAGGAAATAAATCCCTGCGTTTA
+>chrM_10203_10663_1:0:0_1:0:0_42/2
+CCACTAACCTGACTAACAAGCCCTAAAAAAACCTGAACAAACGTAACCTCATATAGTTTTCTAATTAGTT
+>chrM_10206_10702_1:0:0_3:1:0_9e/1
+CTAACCTTACTATCAAGCCCTAAAAAAACCTGAACAAACGTAACCTCATATAGTTTTCTAATTAGTTTAA
+>chrM_10206_10702_1:0:0_3:1:0_9e/2
+AAAATACTGAGTTTTAGGGTTCCTACATGGTTTTGGATTAAGATGAGGGCAATTAGCCGTGGAATAGAAC
+>chrM_10254_10719_0:0:0_1:1:0_8e/1
+TATAGTTTTCTAATTAGTTTAACCAGCCTAACACTTCTATGACAAACCGACGAAAATTATAAAAACTTTT
+>chrM_10254_10719_0:0:0_1:1:0_8e/2
+TTTGTGTTGTGAATGATAAAATTATGAGGTTTAGGGTTCCTACATGGTTTTGGATTAAGTTGAGGGCAAT
+>chrM_10362_10821_2:1:2_0:0:0_c/1
+CTTTTGGTAGTCATAGGTGAACTCCATATAATGGTATTTTAATAAGAAATGCTATTATGCATGCCAACCA
+>chrM_10362_10821_2:1:2_0:0:0_c/2
+ATTATTTTAACAACCTGATTACTGCCACTAATATTAATATCTAGCCAACCACCTAAAAAAAGCTAATAAC
+>chrM_10389_10966_1:0:0_1:0:0_61/1
+CATAGGGAGAGAAGGAAGAAGGGGTATGCTATATATTTTGTTAGTGGGTCTAGAATAATGGAGATGCGAA
+>chrM_10389_10966_1:0:0_1:0:0_61/2
+CTAATATTAATAGCTAGCCAAAACCACCTAAAAAAAGATAATAACGTACTACAAAAAGTCTACATCTCAA
+>chrM_10461_11010_1:1:0_0:0:0_21/1
+AATCTGTTTGGCGTAAGCAGATTGAGCTAGTTATAATTATTCCTCATAGGGAGAGAAGGATGAAGGGGTA
+>chrM_10461_11010_1:1:0_0:0:0_21/2
+CTAATCTGCTTACAAATTCTCCTAATCATAACCTTTTCAGCAAGTGAACTAATTATATTTTATATTTTAT
+>chrM_10767_11161_1:0:0_2:0:1_39/1
+GAGTTTGCTAGGCAGAATAGGAGTGATGATGTGAGGCCATTTTCGATTATTAGTATTTTGCTCCTATGAA
+>chrM_10767_11161_1:0:0_2:0:1_39/2
+ATAGCATTTCTTATTAAAATACCATTATATGGAGTTCACCTATGACTACCAAACGCCCATGTTGAAGCTC
+>chrM_11041_11475_1:0:0_1:1:0_7b/1
+GCCACATAGCACTTGTTCTTGCATCAATCATAATCCAAACTCCATGAAGCTTCATAGGAGCAACAATACT
+>chrM_11041_11475_1:0:0_1:1:0_7b/2
+TTAGTGTTAGTACTCGTGTGTGTGAGGGTTGGAGGTTAATTATATGGTTGCTTAGTTTGCCGCGTTGGGT
+>chrM_11195_11669_2:0:0_1:0:0_49/1
+AGCAAGCCATGTTTTTAAACATGGAAGCATGAATTAGCAGTTCTTGCAATCTTTCTTGGTGAATAAGGAG
+>chrM_11195_11669_2:0:0_1:0:0_49/2
+CATGGCCCGAGGACTTCAAATGGTCATCCCACTTATAGCCACATGATGACTGATAGCAATTCTAGCTAAT
+>chrM_11211_11625_0:1:0_2:0:0_37/1
+CAAATGGTCTTACCACTTATAGCCACATGATGACTGATAGCAAGTCTAGCTAATCTAGCTCTACCCCCTT
+>chrM_11211_11625_0:1:0_2:0:0_37/2
+TGCAATCTTTCTTGGTGAATAAGGAGGTTTATTTCCTGTTGTCAGATTGACAGTCTAATGATTTTTGTAA
+>chrM_11464_11999_0:1:0_3:1:0_3a/1
+AGAGAAAAAGTTCGTTTTTAAGCATATTTTAAGTTCTATTGAATTTATGGTGACTCAGTGCCAGGTTGTA
+>chrM_11464_11999_0:1:0_3:1:0_3a/2
+AACTAACACTAATAGCCCTTCACATAATTCCACTTATTATTCTAACTACCAGTCCAAAACTAATTACAGG
+>chrM_11475_12014_1:1:0_2:1:0_56/1
+ATAGCCCTTCACATAATTCCACTTATTATTCTAACTACCAGTCCAAAACTAATTACAGGCCTGAGAATAT
+>chrM_11475_12014_1:1:0_2:1:0_56/2
+AGATGTCAACAGGATAGAGAAAAAGATAGTTTTGAAGCTTATTTTAAGTTCTATTGAATTTATGGTGACT
+>chrM_11715_12248_2:1:0_1:1:1_a0/1
+TAGGGCTGCAGTATATGCGACTGTTCTCCGTACCATCATCCAATTAGTAGGAAAGATATAATTCCCACCC
+>chrM_11715_12248_2:1:0_1:1:1_a0/2
+ACCTTGGTGCAAATCCAAATCAAAGTAATCAATATTTTCACAACCTTAATCTTATTAATCTTCATTCTTC
+>chrM_12064_12604_0:1:0_1:0:1_aa/1
+GTAAATAATGTGGTTAGGGCTCCGAGGCAAAGTATAGTTGTTAAAATAAAGTTAATATTAGCGTGAGGGG
+>chrM_12064_12604_0:1:0_1:0:1_aa/2
+TACACTCAGACCCAAACATCAATCGATTCATTAAATATCTTACACTATTCCTGTTTACCATGCTTATCCT
+>chrM_12113_12598_3:3:0_2:0:1_70/1
+CCTGTTTACCATGCTTATCCTCACCTCAGCCAACCACATATTTCAACCTTTCATTGGCTGAGCAGGGTTT
+>chrM_12113_12598_3:3:0_2:0:1_70/2
+AAAGTGGTTAGGGGTCCGAGGCAAAGTATAGTTGTTAAAATAAAGTTATTATTAGCGTGAGGGGGTGGAA
+>chrM_12174_12610_1:1:0_0:0:1_93/1
+GAAGGTGTGGGAATTATATCTTTCCTACTAATTGGATGATGGTACGGACGAACAGTCGCAAATACTGCAG
+>chrM_12174_12610_1:1:0_0:0:1_93/2
+ATAGCTGTAAATAATGTGGTTAGGGCTCCGAGGCAAAGTATAGTTGTTAAAATAAAGTTATTATTAGCGT
+>chrM_12218_12618_2:1:1_1:1:0_32/1
+CGGAGAACCGTCGCAAATACTGCAGCCCTACAAGCAATCCTCTATAACCGCATCTGAGACATCGGATTCA
+>chrM_12218_12618_2:1:1_1:1:0_32/2
+GAGCACAAATAGCTGTAAATAATGTGGTTAGGGCTCCGAGGCAAAGTATAGTTGTTAAAAAAAAGCTATT
+>chrM_12243_12713_2:0:0_1:0:0_bd/1
+GCCCTCCAAGCAATCCTCTATACCCGCATCGGAGACATCGGATTCATTTTAGCTATAGTTTGATTTTCCC
+>chrM_12243_12713_2:0:0_1:0:0_bd/2
+TAGGTGTGGTTGGTTTATTCCTAGCGTCACTATTATCAGGCCTAGTTGGCTTGAAGTAGAGAAGGCAATG
+>chrM_12275_12781_1:0:0_1:0:1_6/1
+ATGATTGAGCGAGAGCATATAGAAGAGTATAGCTTTGAAGAATGCGTGGGTACAGATGTGTAGGAATGCT
+>chrM_12275_12781_1:0:0_1:0:1_6/2
+AGACATCGGATTCCTTTTAGCTATAGTTTGATTTTCCCTAAACATAAACTCATGAGAACTTCAACAGATT
+>chrM_12355_12806_0:1:0_1:0:0_6a/1
+GTCTTGTTCGTCTGCCAGGCTATGAATTATTGAGCCAGAGCATATAAAGAGTATAGCTTTGAAGAATGCG
+>chrM_12355_12806_0:1:0_1:0:0_6a/2
+ACAACAACGACAATCTAATTCCACTTAGAGGCCTATTAATCGCAGCTACAGGAAAATCAGCACAATTTGG
+>chrM_12440_12937_5:0:0_1:0:0_8b/1
+ATTGCTTCAATAATTAGGTCTTTTGAGTAGAACCCTGTTAGGAATGGTATTCGTGTGAGGGCGAGGCTTC
+>chrM_12440_12937_5:0:0_1:0:0_8b/2
+AGCATCAGCAATAGACGGCCCTACACCAGTTTCATCACTACTACACTCAAGTACAATAGTATATGCAGGA
+>chrM_12577_13079_0:0:0_1:1:1_11/1
+ATTTTGGTTAATGGAGATGTAGGGGGGGAAAAGGCGGTTTTGTTATTGTTACGAAGTAAATGATTCGTAT
+>chrM_12577_13079_0:0:0_1:1:1_11/2
+GCCTCGGAGCCCTAACCACATTATTTACAGCTATTTGTGCTCTCACCCAAAACGACATCAAAAAAATCAT
+>chrM_12622_13091_0:0:0_3:0:1_78/1
+CCCAAAACGACATCAAAAAAATCATTGCCTTCTCTACATCAAGCCAACTAGGCCTGATAATAGTGACGCT
+>chrM_12622_13091_0:0:0_3:0:1_78/2
+GAGGTCTGGGTCATTTTCGTAAATGGAGATGTAGGTGGGGAAAACGCGGTTTTGATATTGTTACGAAGTA
+>chrM_12640_13011_2:0:0_2:1:0_62/1
+TGCTGTACATAGCTGTCATCGAAGTGGGGATTAGTGTAATTAGTAGGGCTCAGGCGTTGGTGTTGCAGGT
+>chrM_12640_13011_2:0:0_2:1:0_62/2
+AAATCATTGCCTTCTCTACATCAAGCCAACTATGCCTGATAATAGTGACGCTAGGAATAAACCACCCACA
+>chrM_12705_13147_4:0:0_2:0:0_94/1
+CGACACCTAGCATTCCTACACATCTGTACCCACGCAATGTTCAAAGCTATACTCTTTCTATGCTCTGGCT
+>chrM_12705_13147_4:0:0_2:0:0_94/2
+GAGATGACAAATCCTGCAAAGATGCTTCCGCATGCTAGGCGTTTGATTGGGTTTATGAGGTCTGGGACAT
+>chrM_12720_13279_1:0:1_2:0:0_2/1
+ATTGCTAGTTTTATGGTTAGGTTGTTTAGTTCTAGTGCGATTAGTAATCCTAATACTGAAATAATTAGGG
+>chrM_12720_13279_1:0:1_2:0:0_2/2
+CTACACATCTTTACCCACGCATTCTTCAAAGCTATACTCTTCTATATGCTCTGGCTCAATCATTCATAGC
+>chrM_12881_13337_0:0:0_1:1:0_89/1
+AATAGATGGTAAAAACCCCAGTAAACTTGAGAAGGATGAATATGGATTTGCTTTATTTATTGATAGTTTT
+>chrM_12881_13337_0:0:0_1:1:0_89/2
+CACAGGAATACCATTCCTAACAGGGTTCTACTCAAAAGACCTAATTATTGAAGCAATTAATACCTGCAAC
+>chrM_12982_13475_3:1:0_2:0:1_75/1
+TCGCCACTTCTATGACAGCTATGAACAGCATACGACTCATTTACTTCGTAACAATCACAAAACCGCGTTT
+>chrM_12982_13475_3:1:0_2:0:1_75/2
+GGTTGTTAAAGTGGTTATGTTTGTGTGCAAGAGTTGCGGTGGATTTTGGGATGGTTTTTTGTAACCAGAT
+>chrM_13142_13600_1:0:0_1:2:0_34/1
+ATCTTTGTTTGCGGGTATTTTTGTTATTATAGAGATTACTCGAGATTAATTGAGTATAAGAAAATAATTA
+>chrM_13142_13600_1:0:0_1:2:0_34/2
+CATCTCATATAAAATTCCACCAACCAGCATTCCAGTCCTCACAATACCATGATTTTTAAAAACCACAGCC
+>chrM_13198_13763_2:0:0_0:1:0_7c/1
+TTTGTGTGCTTAATTATTATGATGAAGTTGGAGTAATTAATCTTGATGGTATGGGAGATTGGTTGATGTA
+>chrM_13198_13763_2:0:0_0:1:0_7c/2
+TAAAAACCACAGCCCTAATAATTTCAGTATTAGGCTTCCTAATCGCACTAGAACTAAACAACCTAACCAT
+>chrM_13281_13783_1:1:0_1:0:0_67/1
+AATAAAGCAAATCCATATTCATCCTTCACAAGTTTACTGGGGTTTTTCCCATCTATTATTCACCGCATTA
+>chrM_13281_13783_1:1:0_1:0:0_67/2
+GATTATAGAGGTTTTTTTAATTTGTGTGGTTAATTATTATGATGAAGTTGGAGTAATTAATCTTGATGGT
+>chrM_13326_13750_2:0:1_2:1:0_82/1
+TTATTATGATGAAGTTGGAGTAATTACTCTTGATGGTATGGGAGATTGGTTGATGTATTAGGTTGATGAT
+>chrM_13326_13750_2:0:1_2:1:0_82/2
+TACCCATCTCTTATTCACCGCATTACACCCATAAAATTCTCAACCTAAGCCTAAAAACATCCCTAACTCT
+>chrM_13338_13860_2:1:1_2:0:1_4d/1
+ATTCACCGCATTACACCCATAAAATTCTGAACCTAAGCCTAAAAACATCCCTGACTCTCCTAGAGTTGAT
+>chrM_13338_13860_2:1:1_2:0:1_4d/2
+ACTGCTATAGCTACTGAGGAATATCCAGAGACATGGGGATCTAACTGATTAATTTTGGGTATTTAGTATT
+>chrM_13482_13976_0:0:0_1:2:0_c1/1
+TAATTGTTACTGGGTTTGTTGGTCGTTTAATGGTTTTAGGGTTTGGTTGATCGTTTTTAGGTTTAATAGT
+>chrM_13482_13976_0:0:0_1:2:0_c1/2
+AAAGGCTTAATTAAATTGTACTTTATATCATTCCTAATTAACATCATCTTAATTATTATCTTATACTCAA
+>chrM_13494_14044_3:1:0_1:1:0_7d/1
+AAATTGTACATTATATCATTCCTAATTAACATCATCTTAATTATTATCTTTTACTCCAATAATCTCGAGT
+>chrM_13494_14044_3:1:0_1:1:0_7d/2
+TTCATTATTTTCGGTTGGTTGTCTTGGGTTCGCATTAAAGCCTTCACCTATTTATGGAGGTTTAGGTTTA
+>chrM_13715_14154_1:0:0_1:1:0_96/1
+CCATCACGATTAATTACTCCAACTTCATCATAATAATTAAGCACACAAATTAAAAAAACCTCTATAATCA
+>chrM_13715_14154_1:0:0_1:1:0_96/2
+TGTTTGTCATACGGTGTTTCTGTAGTTGAATTACAACGATGATTTTTCATGTCATTGGTCGCAGTTGAAT
+>chrM_13791_14330_0:0:0_3:0:0_29/1
+GGCTGTTATTGTAACTGATGTGTAGTGAATGGCTAAGAAAAGACCTGTAATGATTTGGACTATAAGGCAG
+>chrM_13791_14330_0:0:0_3:0:0_29/2
+ATACTAAAAAACCCAAAATTAATCAGTTAGATCCCCAAGTCTCTGGATATTCCTCAGTAGCTATAGCAGT
+>chrM_13813_14351_0:1:0_0:1:0_1f/1
+TCAGTTAGATCCCCAAGTCTCTGGATATTCCTCAGTAGCTATAGCAGTTGTATATCCAAACACAACCAAC
+>chrM_13813_14351_0:1:0_0:1:0_1f/2
+AATGTGTGTTACTGATGAAAAGGCTGCTATTGTATCTGATGTGTAGTGTATGGCTAAGAAAAGACCTGTA
+>chrM_13910_14543_2:1:0_1:1:0_30/1
+ATTAAACCTAAAAACGATCCACCAAACCCTAAAACCATTAAACGAGCAACAAACCGACTAACAATTAAAC
+>chrM_13910_14543_2:1:0_1:1:0_30/2
+AAGGAGGTAGCCTATAAATGCTGTGGCTATGACTGCGAACAGAAGAAGTACTCCAATGTTTCAGGTTTCT
+>chrM_13936_14395_2:2:0_1:1:1_76/1
+CCCTAAAACCATTAAACGACCAACAAACCCAGTAACCATTAAACCTAAACCTCCATAAATAGGTGAATGC
+>chrM_13936_14395_2:2:0_1:1:1_76/2
+GCGTGTATATATCGGATTAGTCACCCGTAAATTAACATCTCGACAAATGTGTGTTACTGATGAAAAGGCT
+>chrM_13940_14475_1:1:0_3:2:0_27/1
+AAAACCATTAAACGACCAACAAACCCACTAACAATTAACCCTAAACCTCCATAAATAGGTGAAGGCTTTA
+>chrM_13940_14475_1:1:0_3:2:0_27/2
+CTATAAATGTATCTGATCCATAATATAATCGTCGTCCGACAAGAAGGAACAAGCAAATAAAAAATATTGA
+>chrM_13944_14351_1:1:0_0:0:0_44/1
+AATGTGTGTTACTGATGAAAAGGCTGTTATTGTATCTGATGTGTAGTGTATGGCTAAGAAAAGACCTGTA
+>chrM_13944_14351_1:1:0_0:0:0_44/2
+CCATTAAACGACCAACAAACCCACTAACAATTAAACCTAAACGTCCATAAATAGGTGAAGGCTTTAATGC
+>chrM_13991_14484_3:1:0_3:4:0_20/1
+TAAATAGGTGAAGGCTTTAATGCTAACCCCAGACAACCAACCCAAAATAATGATCTTAAAACCAAAATAT
+>chrM_13991_14484_3:1:0_3:4:0_20/2
+AAGAGGTTTCTATAAATGTATCTGATCCATAATATAAGCCTCGTCGGACCTGAAGGAACAAGCAAATAAA
+>chrM_13992_14451_1:1:0_1:3:0_52/1
+ATAAGCCTCGTCGGAGCTGAAGGAACAAGCAAATAAAAAATATTGAGGCTCCGTTTGCGTGTATATATCG
+>chrM_13992_14451_1:1:0_1:3:0_52/2
+AAATAGGTGAAGGCTTTAATTCTAACCCAAGACAACCAACCAAAAATAATGATCTTAAAACAAAAATATA
+>chrM_14052_14489_0:0:0_3:4:0_4c/1
+CAAAAATATAATTATTCATTATTTCTACACAGCATTCAACTGCGACCAATGACATGAAAAATCATCGTTG
+>chrM_14052_14489_0:0:0_3:4:0_4c/2
+AATGTTTCAGGTAACTATAAATGTATCTGATCCATAATATAAGCCTCGTCGGACCTTAAGGAACAAGCAA
+>chrM_14105_14613_0:0:0_2:0:0_48/1
+ATGAAAAATCATCGTTGTAATTCAACTACAGAAACACCTAATGACAAACATACGAAAAACACACCCATTA
+>chrM_14105_14613_0:0:0_2:0:0_48/2
+CAATATATGGGATGGCAGATAGGAGGTTTGTAATAACTGTGGCACCTCAGAATGATATTTGTCCTCATTG
+>chrM_14128_14614_0:1:0_1:1:0_97/1
+AACTACAGAAACACCGAATGACAAACATACGAAAAACACACCCATTATTTAAAATTATTAACCACTCATT
+>chrM_14128_14614_0:1:0_1:1:0_97/2
+CCAATATCTTGGATGGCTGATAGGAGGTTTGTAATAACTGTGGCACCTCAGAATGATATTTGTCCTCATG
+>chrM_14131_14628_2:1:0_2:1:0_36/1
+TACAGAAACACCGAATGACAAACATACGACAAACACACCCATTATTTAAAATTATAAACCACTCATTCAT
+>chrM_14131_14628_2:1:0_2:1:0_36/2
+CGACTAGGGTTGTTCCAATATATTGGATGGCTGATAGGAGGATTGTAATAACTGTGTCACCTCAGAATGA
+>chrM_14312_14826_2:1:1_4:1:0_a4/1
+CTTTGATTTTATAGTAGGGGTGAAATGGACATTTATCTGCATCTGAGAATAATCCTGTTGGGTTGTTTGA
+>chrM_14312_14826_2:1:1_4:1:0_a4/2
+ATCAGATAGAATAACAGCCTTTTCATCAGTAACACACATTTGTCGATATGTAAATTTACGGGTGACTAAT
+>chrM_14442_15026_1:2:0_3:0:0_60/1
+CGAGGCTTATATTATGGATCAGATACATTTATAGAAACCTGAAACATTGGAGTACTTCTTCAGTTCGCAG
+>chrM_14442_15026_1:2:0_3:0:0_60/2
+TAAGGCTATGACACCTCCTAGTTTCTTGGGGATTGAGGGTAGAATGGCGTATGCAAATAGGAAATATCAT
+>chrM_14576_14894_2:0:0_0:0:0_5f/1
+AGTTATTCCAAACCTCCTATGAGCCATCCCATATATTGGAACAACCCTAGTCGAATGAATTTGAGGGGGC
+>chrM_14576_14894_2:0:0_0:0:0_5f/2
+TAGTATGTCTGGGAAAAATAATACTAGGGTTATGAGAATTAAGAATATGATTAGGATACCTAGGATATCT
+>chrM_14707_15163_1:1:0_1:2:0_9/1
+TTATCGGGGCCCTAGCAATCGTTCACCTCATCTTCCTCCACGAAACAGGATCAAACAACCCAACAGGATT
+>chrM_14707_15163_1:1:0_1:2:0_9/2
+CCCCCAATTCAGGTTACGATAAGTAGGTTGGCTACTAGGATTCAGTACAAAATTTTTCTGATTGGGCGGA
+>chrM_14728_15189_1:2:0_2:0:0_7a/1
+TTCACCTCATCTTCCTCCACGAAACAGGATCAAACCACCCAACAGGATTATACTCAGATGCAGATAAAAT
+>chrM_14728_15189_1:2:0_2:0:0_7a/2
+TAATAAATGGGTGTTCTCCTGGTTGGCCCCCAATTCAGGTTAAGATAAGTAGGTTGGCTACTAGGAATCA
+>chrM_14768_15298_0:1:0_1:1:0_ac/1
+CTATCAAGACATGGATATAATTTTAGTATTTTGTCTTCGATAAGTCCTGAGCTTGGTATAAGAATTAAGA
+>chrM_14768_15298_0:1:0_1:1:0_ac/2
+AACAGGATTATACTCAGATGCAGATAAAATTCCATTTCACCCCTACTATACAATCAAAGATATCCTAGGT
+>chrM_14794_15314_1:0:0_1:0:0_c0/1
+AAATTCCATTTCACCCCTACTATACAATCAAAGATATCCTAGGTATCCTAATCATATTCTTAATTCTGAT
+>chrM_14794_15314_1:0:0_1:0:0_c0/2
+CAGAGTAATGTTTATACTATCAAGACATGGATATAATTTTAGTATTTTGTCTTCGATACTTCCTGAGATT
+>chrM_14820_15346_1:0:0_0:0:0_5a/1
+AAGAGAAGATCTTCATTTCAGGTTTACAAGACCAGAGTAATGTTTATACTATCAAGACATGGATATAATT
+>chrM_14820_15346_1:0:0_0:0:0_5a/2
+ATCAAAGATATCCTAGGTATCCTAATCATATTCTTAATTCTCCTAACCCTAGTATTATTTTTCCCAGACA
+>chrM_14858_15398_0:0:0_3:0:0_b3/1
+CAGCTTTGGGTGCTGGAGGTGGGTAGTAGCTCCTTCTTCTTGATGTCTTGAGAAGAGCAGATCTTCATTT
+>chrM_14858_15398_0:0:0_3:0:0_b3/2
+TCTCATAACCCTAGTATTATTTTTCCCAGACATACTAGGAGACCCAGACAACTACATACCAGCTAATCCA
+>chrM_14885_15311_3:1:0_1:0:0_3/1
+AGTAATGTTTATACTATCAAGACATGGATATAATTTTAGTATTTTGTCTTCGATAATTCCAGAGATTGGT
+>chrM_14885_15311_3:1:0_1:0:0_3/2
+AGACATACTAGGAGAGGCCGACAACTACCTACCAGCTAATCCACTAAACACCCCACCCCATATTAAACCC
+>chrM_14975_15480_1:0:1_0:1:0_4e/1
+ATACGCCATTCTACGCTCCACTCCCCAATAAACTAGGAGGTGTCCTAGCCTTAATCTTATCTATCCTAAT
+>chrM_14975_15480_1:0:1_0:1:0_4e/2
+AATAGTTTAATGTACGATATACATGAATGTACTGTTGTACTATGTAAATTTATGTACTCAAGAAGTAGTT
+>chrM_14988_15504_0:0:0_1:1:0_38/1
+GTATTAGCTTATATGCTTGGGGAAAATAGTTTAATGTACGATATACCTAAATGTACTGTTGTACTATGTA
+>chrM_14988_15504_0:0:0_1:1:0_38/2
+CGCTCAATCCCCAATAAACTAGGAGGTGTCCTAGCCTTAATCTTATCTATCCTAATTTTAGCCCTAATAC
+>chrM_15171_15615_1:0:0_0:1:0_c3/1
+TAACACAGATATGTCCTTATAACATTAGTTTAATGTGTTTAAGATAATATTCATGGTATATATATTGGTT
+>chrM_15171_15615_1:0:0_0:1:0_c3/2
+GTAGAACACCCATTTATTATCATTGGCCAACTAGCCTCCATCACATACTTCTCAATCATCTTAATTCTTA
+>chrM_15196_15749_1:1:1_2:1:0_c4/1
+GCTAACTAGCCCCATCTCATACTTCTCAATCATCTTAATTCTTATACCAATGTCAGGAATTATCGAAGAC
+>chrM_15196_15749_1:1:1_2:1:0_c4/2
+TGGCCCGGAGCGAGAAGAGGGGCATTGGTGGGCGGGTTGTAGGTTTCACGGAGGATGGAAGATTAATAGA
+>chrM_15361_15805_1:0:0_2:0:0_81/1
+TGAAGTAAGAACCAGATGTCTTATAAAGTTTCAGTTTAGCTACCCGCAAGTTTAATGGGCCCGGAGCGAG
+>chrM_15361_15805_1:0:0_2:0:0_81/2
+AAGAAGGAGCTACTCCCCACCACCAGCACCCAAAGCTGGTATTCTAATTAAACTACTTCTTGAGAACATA
+>chrM_15417_15889_0:0:0_2:0:0_50/1
+TTCTTGAGTACATAAATTTACATAGTACAACAGTACATTTATGTATATCGTACATTAAACTATTTTCCCC
+>chrM_15417_15889_0:0:0_2:0:0_50/2
+GTTGGTCATGGGCTGATTAGACCCGAAACCATCGAGATGTCTTATTTAAGGGGCACGTATGGGCGATAAC
+>chrM_15462_15945_2:1:0_0:0:0_0/1
+TATCGTACATTAAACAATTTTCCCCAAGCATATAAGGTAATACATTAAATCAATGGTTCAGGTCATAAAA
+>chrM_15462_15945_2:1:0_0:0:0_0/2
+TGTTGATGAAAGTAGGCCAAAATAAAAAGATACCAAATGCATGACACCACAGTTATGTTGGTCATGGGCT
+>chrM_15481_15968_1:2:0_2:0:0_6d/1
+GTCCTTACATGCCTTGACGGCTATGTTGATGAAAGTAGGCCAAAATAAAAAGATCCCAAATGCATGACAC
+>chrM_15481_15968_1:2:0_2:0:0_6d/2
+TTCCCCAAGCATATAAGCTAATACATTAAATCCATGGTTCAGGTCATAAAATAATCATCAACATAAACCA
+>chrM_15523_16020_2:1:0_1:1:0_31/1
+GGGTTTTGCGGACTAATGATTCTTCACCTAAGGTGCGTCTAGACTGTGTGCTGTCCTTTCATGCCTTGAC
+>chrM_15523_16020_2:1:0_1:1:0_31/2
+GTCATAAAATACTCAACAACATAAACCAATATATATACCATGAATATTATCTTAAACACATTAAACTAAT
+>chrM_15549_16044_0:1:0_1:1:0_59/1
+ATGAATAATTAGCCTTAGGTGATTGGGTTTTGCGGACTAATTATTCTTCACCGAAGGTGCGTCTAGACTG
+>chrM_15549_16044_0:1:0_1:1:0_59/2
+CAATATATATACCATGAATATTATCTTAAACACATTAAACTAATGTTATAAGGACATATCTGTGTTATCC
+>chrM_15642_16224_2:1:0_0:0:0_a5/1
+AGTACTAAAATATAAGTCATATTTTGGGAACTACTAGAATTGATCAGGACATAGGGTTTGATAGTTAATA
+>chrM_15642_16224_2:1:0_0:0:0_a5/2
+CTCTTCTCTTCCATCTGACTATCCCCTTCCCCATTTTGTCTATTAATCTTCCATCCTCCGTGAAACCAAC
+>chrM_15720_16131_0:1:0_2:1:0_58/1
+TGTTTATGGGGTTTGGCATTAAGAGGACGGGGTGGGGGGTTTTGAGAGTTAAAATTTGGTATTGAGTAGC
+>chrM_15720_16131_0:1:0_2:1:0_58/2
+CACCAATGCCCCTCCTCTCGCTCCGGGCCCATTAAACTTGGGGGTAGCTAAACTGAAACTTTATCAGACA
+>chrM_15820_16268_3:1:0_1:0:2_7f/1
+TTAGAGTTTTGGTTCACGGAACATGATTTTGTAAAATTTTTACAAGTACTAAAATAAGTCATATTTTGGG
+>chrM_15820_16268_3:1:0_1:0:2_7f/2
+GTTATCGCCCATACGTTTCCCTTAACTCAGACATCTCGATGGTATCGGGTCTAATCAGCCCCTGACCAAC
Binary file samtools_fastx/test-data/samtools_fastx-out1.fasta.gz has changed
Binary file samtools_fastx/test-data/samtools_fastx-out2-1.fastq.gz has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/samtools_fastx-out2-2.fastq	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,800 @@
+@chrM_235_738_2:1:0_0:0:0_ab
+TCAGCAGTGATAAATATTAAGCAATAAACGAAAGTTTGCCTAAGTTGTACCTCTTCGGGTTGGTAAATTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_292_781_1:1:0_1:0:0_bf
+GGTTGGTAACTTTCGTGCCAGCCACCGCGGTCATACGATTAGCCCAAACTAATTATCTTCGGCGTAAAAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_293_831_0:1:0_1:0:0_b
+GTTGGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAGCCCAAACTAATTATCTTCGGCGTAAAACG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_361_902_2:3:0_1:1:0_8e
+GTGCGTACTTCATTGCTCAATTCACTTAAGATCTCTATTCTTAATTTACTACTAAATCCTCCTTAGTCCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_364_806_2:3:0_0:0:0_54
+TTCTTTTATAAGAAAATGTAGCCCATTTCTTCCCATTTCATTGGCTACACCTTGACCTAACGTTTTTATG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_406_958_3:0:0_1:1:0_c3
+TCTAGAAATTAATTATGTTAAGTTTAATTTAATTTGAGGAGGGTGAGTGGCGGTGTGTGCGTACTTCATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_600_1083_1:1:0_0:0:0_77
+CATTGGTCATGAAATCTTCTGGGTGTAGGCCAGATGCTTTAATATTAAGCTACACTATGATTATTCCAAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_655_1179_0:1:0_1:2:0_60
+CACCATCTCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAAACCTAAAAAGGTATTAAAGTAAGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_709_1253_2:0:0_2:1:0_23
+AGGTATTAAAGTCAGCAACAGAATCAAACATAAAAACGTTAGGTCAAGGTGTAGCCAATGAAATGGGAAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_713_1102_2:0:0_0:0:1_50
+AGGTGATTAGTTCAGAGTGTTCATTGGTCATGAAATCTTCTGGGTGTAGGCCAGATGCTTTAATATTAAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_748_1226_0:0:0_3:2:0_a
+TCTTTCCCTTGCGGTACTAGTTCTATATGACCTAGATGTACGAATTTCTCTCTCCAATACTTTTATTAGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_787_1256_2:0:0_1:1:0_5a
+TGCTTGTTCTTACTTTTAATTAGTCTTTCATGTTTCCCTTGCGGTACTAGTTCTATATCTCCTAGATGTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_820_1322_1:2:0_1:1:0_32
+TTAATGAAACTAAAGGACTAAGGAGGATTTAGTAGTAAATTAAGAATAGAGATCTTAATTGGATTGAGCA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_835_1289_4:2:0_0:1:0_44
+GTTCATTATGCAAAAGGTACAAGGTTTAATCTATGCTTGTTCTTACTTTTAATTAGTCTTTCATCTTTCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_846_1403_2:3:0_2:2:0_85
+ATTTAGTAGTAAATTAAGACTAGAGATCTTACTTGAATTGAGCAATGAAGTACGCACACACCGCCAGACA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_961_1470_3:2:0_1:0:0_2c
+ACTTAAATTCATTTTTTGGGTAACCAGCTATCACCCAGCTCGTTAGGCTTTTCACCTCTACCTAAAAATC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1023_1543_3:0:0_1:0:0_30
+ATCATAGTGTAGGTTCCTATTAAAGCATCTGGCCTACACCCAGAAGATTTCATGACCAATGAACACTCTG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1053_1571_0:1:1_4:0:0_bb
+CTATAAAAGGTTTTTTCGGTTCCAGAAGAGCTGTCCCTCTTTTGGCTATACTCTAAACTTAGTTTTTGAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1370_1912_0:0:0_1:1:1_79
+TCAACTCGTCTATGTGGCAAAATAGTGAGAAGATTTTTAGGTAGAGGTGAAAAGCCTAACGAGCTTGGTG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1415_1865_4:0:0_1:2:0_5e
+GCGTTAACAGAGAAGTTAAAGGTGCATTATTTATAGTGTGATTATTGCCTATAGTCTGATTAACTAACAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1550_2018_2:0:0_0:1:0_e
+GAACGGAAAAAACCTTTAATATTGAATAATTAACAAAACAGCTTTTAACCATTGTAGGCCTAAAAGCCGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1614_2107_1:1:0_2:0:0_2e
+ATTAAAGATAAGAGACAGTTGGACCCTCGTTTAGCGGTTCATGGTAGTCCCTAATTAAGGAACAAGTGAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1736_2168_2:2:0_0:1:0_a2
+ATAGGGTCTTCTCTTCTTATTATTATATTTCAGCCTCTTCACTGAAAGGTCAATTTCACTGATTAAAGAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1762_2310_0:1:0_3:1:1_d
+TGCCTTGTAAGTCTAGGTGTATAATCCTTCGGAGGATTTTTTATTCTCCGAGGCCACCCCAAGCGAAATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1881_2335_1:1:1_1:1:2_34
+TCAATAAGATATGTTGATTTTACATTGACTTGTAAGTCTAGGTGTATAATCAAGTCGGAGGATTTTTTAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1883_2385_1:1:1_0:0:0_1e
+GCGCTGTTATCCCTAGGGTAACTTGGTCCGTTGATCAAAATATATCTGGGTCAATAAGATATGTTGATTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1915_2407_1:0:0_2:0:0_c0
+ATATGAACTCTTAAATAGGATTGCGCTGTTATCCCTAGGGTAACTTGGACCGTTTATCAAAATATATCTG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2004_2537_1:0:0_2:0:0_83
+CCGACCAGGATTGCTCCGGTCTGAAGTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCATTAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2036_2630_1:0:0_3:3:0_af
+TAATCACTTGTTCCTTAATTAGGGACTAGCATGAACGGCTAAACGAGGGTCCAACTGTCACTTATCTTTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2060_2566_0:0:0_0:2:0_89
+TACTAGAAGAAATCGTAAATAGATAGAAACCGACCTGGATTGCTCCGGTCTGAACTCAGATCACGTAGGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2091_2559_1:1:0_3:0:0_6e
+TGTCTCTTATCTTTAATCAGTGAAATTGACCTTTCAGTGAAGAGGCTGAAATATAATAATAAGACGAGAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2143_2644_4:1:0_2:1:0_86
+TATTATAATTAGATTTTATTCATAAATTAAGTTGAGAGCGCTTATTTGTAAGGTGTCTCTATTTCTCTTG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2253_2831_2:1:1_2:2:0_b4
+GGGTGGCCTCGGAGAATAAAAAATCCTCCGAATGCTTATACACCTAGACTTCCAAGTCAAAGTAAAATCA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2319_2795_0:0:0_0:1:0_56
+TCAACATATCTTATTGACCCAGATATATTTTGATCAACGGACCAAGTTACCCTAGGGATAACAGCGCAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2789_3334_4:1:0_1:0:0_a3
+TCTACTCGCCATAGCCTTCCTAACATTAGCAGAACGCCAAATCTAAGGGTACATACAACTACGAAAATGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2849_3341_2:0:1_1:0:2_75
+GGGGGCCCGGTTTGTTTCTGCTAGGGTTTAGATAAATCATATTATGGCTGGGTCAGGCTGGCAGAAGTAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2870_3363_0:0:0_4:1:0_a9
+ATTCTGGTTCTGTCAGGTCGAAGGGGGCCGGGTTTGTTTGTGCTAGGGTTGAGATCAATCATATTATGGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2936_3340_3:0:0_5:0:0_b5
+CCCTTTAACACCCTCTATATCCTTATTTATTCTTGCACCTACCCTATCACTCACACTAGCATTAAGTCAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3087_3568_1:0:0_2:1:1_76
+GATTACTCCATTCTATGATCAGGATGAGCCTCAAACTCCAAATACTCACTATTCGGAGCTTTACGAGCCG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3174_3643_1:1:0_4:0:0_72
+AGTGTTAGGGGTAGAACGTTTTTACATAGAAGATTTATAAGTTGATCGTAACGGAAGCGTGGATAAGATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3213_3711_2:0:0_2:0:0_b2
+TTAATAACTGGATCCTACTCTCTACAAACACTTATTACAACCCAAGAACACATATGATTACTTCTGCCAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3263_3744_2:0:2_1:1:0_1a
+TTACTCTATCCAAGTAATTCTTTAATCAGACATATTTCTATATGTATGGTGGTACTCCCGCTGTAAAAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3355_3923_3:1:0_1:1:0_55
+TAGGATTTATTAGTACGGGAAGGATTTAAACCAACGTTATCGGGGTATGGGCCGGATAGCTTAATTAGCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3395_3924_1:1:0_1:1:0_64
+CGCAGCCGGCCCATTCGCGTTATTCTTTATAGCAGAGTACGCTAAGATTATTCTAATAAACGCCCTAACA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3398_3876_1:1:0_2:1:0_21
+AGCCGGCCCATTCGCGTTATTCTTTATAGCAGAGTACGCTAACATTATTGTAATAAACGCCCTAACAACT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3617_4081_2:1:0_0:0:0_68
+ATGAAAAAACTTTCTACCCCTGCCACAAGCATTATGTATGTGACATATTTCTTTACCAATTTTTACAGCG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3773_4214_3:0:0_1:0:0_aa
+CTATTAATGTTATGTTAAGGATAAGACCGTTTGTTTGTTGTTGAAATATTCATGTTCCTATTTGTTTATA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3821_4257_1:0:0_2:0:0_69
+GCTACCTCAACACCTTATCCTAATAGTAAGGTCAGCTAATTAAGCTATCGGGCCCATACCCCGAAAACGT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4014_4643_2:0:0_2:1:0_8b
+ATATAGTTAGTATTGCTGGAGTTTTATTTCATAGAAGTGAGATTGAGTTTATGGTTAAAGAGTTATTTAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4351_4852_1:0:0_0:2:0_2d
+TATTTTTTAGTTATTGTTGGTTGGAAATATTGTTAGTGAAGTGGAATAAATTAGGCGAGTATAAACGAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4389_4907_2:1:4_2:1:0_43
+TTACTTGTATTTTCATAGGGGCAAGAGGAGGACTTTAACCAAACACAAATACGAAAAATTGCCTATTCAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4433_5040_0:2:0_2:1:2_70
+CAAATACGAAAAATTATAGCCTGTTCATCAATTGCCCAAATAGGATGAATATTAGCAATTCTTCCTTACA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4451_4928_3:2:0_2:0:0_28
+GGGGTAGGGTTATTGTGCTTATGATAGCTAGGGTGTACAATATTAGGTTGGGTTTAGTTTTTGTTTGGTG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4594_5169_2:0:0_1:0:0_27
+CAACTCAATCTCACTTCTATGAAATAAAACTCCATCAATACTAACTATAATCTCACTGATATTACAATCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4633_5057_1:1:0_0:1:0_3f
+TTGCATTCAATAGATGTAGGATGAAGTCTTTCAGTCCTTATCAGAAGTTAAACTTGTGTGTTTTCTTAGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4723_5166_3:1:0_1:0:0_7f
+TAAAACAAACAACTGTCTAATTATAGCAACACTCATAGCAATAATAGCTCTACTATACCTATTCATTTAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4740_5317_2:2:0_2:3:0_46
+GCTGAGTAAGCATTAGACTGTAAATCTAAAGACCCAGGTTTAAGTCCTTTTTTTACCAGAGGTCTTAAGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4944_5486_1:0:2_2:1:0_4e
+TTACCTAGAAGTTTAGGATATACTAGTCCGCGAGCCTTCAAAGCCCTAAGAAAACACACCAGTTTAACCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4989_5463_0:1:2_1:1:0_9a
+CACCTGGTTGACCTAATTCTGCGCGAATTAAAATACTTAGTGCAGTACCCACTATTCCCGCTGAGGCTCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5079_5628_3:1:0_1:0:0_45
+TTATATTATTTATTCGTGGGAATGCTATATCTGGGGCTCCGATTATTAGTGGGACCAGTCAGTTTCCAAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5081_5631_1:1:0_1:1:0_62
+AACTTGTATTATTTATTCGAGGGAATGCTATATCTGGGGCTCCGATTATTAGTGGGACAAGTCAGTTTCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5235_5764_4:3:0_1:1:0_18
+GACATGAATATCACCTTAAGAGCTCTGGTAAAAAAAGGACTTAAACGTGTGTGTTTAGCTTTACAGTGTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5364_5814_0:2:0_0:0:0_ba
+AAAGATATCGGAACCCTCTATCTACTATTCAGAGCCTGAGCGGGACTAGTGGGTACTGCACTAAGTATTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5499_6008_3:0:0_1:2:0_53
+GTAACTGCCCATGCTTATGTTAAAATTTTCTTCATAGTAATACCAATAATAATTGGAGGGTTTGGAAACT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5575_6058_0:0:0_0:1:0_3a
+TAAACTTCTGGGTGGCCAAAGAATCAGAACAGATGCTGGTAGAGAATTGGGTCCCCTCCTCCAGCGGGAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5630_6213_1:0:0_0:1:0_91
+TTTTTGACTCCTACCACCATCATTTCTCCTTCTCCTAGCATCATCAATAGTATAAGCAGGAGCAGGAACA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5666_6214_1:0:0_0:1:0_0
+CATACTGTGAATATGTGGTGGGCTCATACAATAAAGCCTAGAAAGCCAATAGACATTATTGCTCATACTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5735_6152_2:0:0_0:1:0_c1
+AGCCCATGCAGGAGCATCAGTAGACCTAACAATTTTCTCCCTTCATTTAGCTGGAGTGTCATCTAATTTC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5817_6393_0:1:0_2:2:0_a8
+TTCCCGTTATACCACCAACTGTAAATAAGAAAATAAAGCATAAGGCTCATAGAATAGCTGGAGATCATTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5893_6392_1:2:0_0:2:0_22
+TTATTACAGCCGTAGTGCTCCTATTATCACTACCAGTGCTACCCGCAGGCATTACTATACTACTAATAGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5902_6370_4:1:0_3:2:0_8f
+AATAAGAAAATACAGCATAAGGCTCATAGTATAGCAGGAGATCATTTACTATTACCTCCGTATAGGGTTG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5923_6445_3:2:0_1:2:0_b8
+ACATAGTATGTATCGTGAAGCACGATGTCAGTGGATGAGTTGGATAACACAATTCCGGTTAGACCACCAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6034_6497_2:3:0_0:1:0_4a
+TATGATAGCAAACACCGCTCCCATTGATAGAACATAGTGGAAATGGGCTACTACATAGTATGTATCGTGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6047_6600_1:2:0_1:0:0_ac
+CCCAGAAGTTTATATTCTTATCCTCCCAGGATTTGGATTCATTTCACATGTAGTTCCTTACTACTCCGGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6123_6649_2:0:0_2:0:0_b9
+GAGTAGCGTCGAGTTATTCCTGAAAGGCCCAGGAAATGTTGAGGGAAGAATGTTATGTTTACTCCTACGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6135_6597_0:0:1_2:0:0_90
+TATATAGGAATAGTATGAGCAATAATGTACTATTGGCTTTCTAGGCTTTATTGTATGAGCCCACCACATA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6242_6759_1:2:0_2:2:0_9b
+TAGCAAAGGCCTGTCAAATTATAAAGATCATGATGAGAACAGCTGTTAGTGAAATAAATGATACAATAGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6286_6744_2:2:0_1:1:0_c4
+TATTTAGCTGACTTGCAACGGTATACGGAGGTAATATTAAATGATCTCCAGCTATACTATGAGCCTTATG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6288_6809_0:2:0_1:1:0_a6
+TTTAGCTGACTTGCAACCCTATACGGAGGTAATATTAAATGATCTCCAGCTATACTATGAGCCTTATGCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6468_6879_3:1:0_3:1:0_12
+CTATCAATGGGAGCGGTGTATGCTATCATATCAGGATTTGTTCACTGATTCCCATTATTATCAGGCTTCA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6618_7072_3:0:0_2:0:0_88
+TAGCTCTTCTATAATAGGGGAAGTGGCGTCTAGTAGACCAAGTTGGAATGGGTAGGCCATATAAGATATA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6660_7121_1:1:0_0:1:0_b6
+AGGAGCTAATTAGGAAAACAACTATTAGTGTGTGATCATGGAAATTTATTAGCTCTTCTATAATAGGGGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6680_7101_1:1:0_2:1:0_c
+ACTATTATTGTGTGATCATGGAAATTTATTAGCTCATCTATAATAGGGGATGTGGCGTCTTGTAGACCAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6686_7208_1:1:0_0:0:0_3
+CTCTTCTATAGTATCATTTAATTCACTAACAGCTGTTCTCATCATGATCTTTATAATTTGAGAGGCCTTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6696_7251_0:2:0_1:2:0_16
+GTATCATTTATTTCACTAACAGCTGTTCTCATCATGATCTTTATAATTTGAGAGGCCTTTGCTACAAAAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6717_7185_3:1:0_2:0:0_71
+GCTGTTCTCATGATGATCTTTCTAATTTGAGAGGCCTTTGGTACAAAACGAGAAGTAATATCAGTATCGT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6762_7357_1:0:0_2:1:0_8a
+AAACGAGAAGTAATATCAGTATCGTATGCTTCAACAAATTTAGAATGACTTCAAGGCTGCCCTCCACCAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6802_7288_1:0:0_0:2:1_81
+GTTGTTGATTTTGGTCTATTATATATAGAATGCGTAGAGAGGGGAGAGCAATTATGATAAGGATCACAGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6823_7377_2:1:0_2:1:0_a4
+TTCCACCATATCACACATTCGAGGAACCAACCTAAGTAAAATTAAAATAAGAAAGGAAGGAATCGAACCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6856_7411_3:0:0_3:1:1_4
+CTGTAAAAGTAAAATAAGAAAGGAAGGACTCGAACCCCCAAAAATTGGTTTCAAGCCAATCTCATATCCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6883_7266_2:1:0_0:1:0_b1
+AATCGAACCCCCTAAAATTGGTTTCAAGCCAATGTCATATCCTATATGTCTTTCTCAATAAGGTCTTAGT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6908_7324_0:3:0_0:2:1_52
+AAGCCAATCTCATATCCTATATGTCTTTCTCACTAAGGTATTAGTAAAATCAATTTCATAACTTTGTCAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6957_7445_0:1:0_0:1:0_84
+GCAGAACGACTCGGTTCTCAACTTCTAGCAGTCGTAGTTCACCAGGTTTTAGGTCGTTTGTTGGGATTAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7024_7550_0:0:0_0:0:0_31
+ATTCCAACTTGGTCTACAAGACGCCACATCCCCTATTATAGAAGAGCTAATAAATTTCCATGATCACACA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7076_7590_1:1:0_1:0:1_6f
+TAGAATAACCCTGGTCGGTTTGATGTTACTGTTGCTTGATTTAGTCGGCCTAGTGATGGCATCAGTTTTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7104_7635_2:0:0_1:1:0_ae
+GGCATAAAGCTATGGTAAGATCCACAAATTTCAGAGCATTGGCCATAGAATAACCCTGGTCGTTTTGATG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7289_7847_3:2:0_1:1:0_7e
+CGTTTAGTTGAAATAAGATAAATAGGGTAATTATTGATGAGATAATTGTGATACATCATGTTGATGTATC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7513_8064_1:0:1_0:1:0_1f
+CCTAGGACTTAAAACTGATGCCATCCCTAGGCCGACTAAATCAAGCAACAGAAACATCAAACCGACCAGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7711_8089_3:2:0_0:1:0_8
+TGATAATAAGTTTAACTAGTCAGTGTTGGAATGAATGGAGACGGTTGTTGATTAGGCGTTTTGAGGATGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7734_8225_2:3:0_1:1:0_9d
+ATGGATAGTTGGGTAGTAGGTGTAAATGTATGTGGTAAAACGCCTAGGAGAATTGTTGATCCAATAAATA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7759_8313_1:2:0_1:3:0_20
+AAGGAAGTGGGCAAGTGAGCTTCTTAGTGTGTGTCGGAAGGCAGTAATTACGGCTCCAGCTCATAGTGGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7862_8397_1:2:0_0:1:1_9c
+TGCTAATGCCATTGGTTGAATAAATAGGCTAATCCTGTTTCAATAATAGTAAGTATTGGAATTAGTGAAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8006_8435_2:1:0_2:1:0_95
+CTTCAATCCTATTCCCATCCTCAAAACGCCTAATCAACAACCGTCACCATTCATTCCAACACTTACTAGT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8092_8707_0:2:0_2:0:0_25
+CAAATAATGCTAATCCACACACCAAAAGGACGAACATGGACCCTAATAATTGTTTCCCTAGTCATATTTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8156_8604_3:1:1_1:0:0_6b
+TATTTATAGGATCAACAAATCTCCAAGGCGTTTTACCAGTTCATACATTTAGACCTACTACCCAACTATC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8225_8694_3:4:0_2:0:0_b0
+TATATCTAAGTATAGCCATTCCACTATGAGGTGGAGCCGTAAATACTGGCTTCCGACACACAGTAAGAAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8286_8815_1:2:0_4:0:0_4f
+TGGCCTTGGTAGGTTCCTTCCCGAATTACGTCTCTTCATCATTGATATATTTTGAGGATATTTGTGAGTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8372_8947_0:1:0_2:3:0_63
+TATTTATTCAACCAATGGCATTAGCAGTCCGGCTTACAGCTAATATTACTGCAGGACACTTATTAATACA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8450_8856_3:2:1_2:0:0_6d
+GAGGAGCTACTCTCGTATTACTAAATATTAGCCCCCAAGAGCTACCATTACAATTATTATTTTACTACTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8506_9018_2:0:0_3:2:0_92
+ATTATTTTACTTCTACTCACAATTGTAGAATTTGCAGTAGCATTAATTGAAGCCTACGTATTCACCCTCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8661_9208_2:0:0_0:1:0_14
+GTAGCCATGAAGACTGTAGAACCATAGATACCATCTGAAATGGAGAATGATGTTTCAAAGTATTCTGAAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8836_9300_1:0:0_0:0:0_7
+GATGTTTTGATGTGAAGTGAAATTTTAGTTGTCGTAGTAGGCAAACAATAAGGAATGTTGATCCAATAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8874_9317_3:2:1_2:0:0_2b
+GAAGTATATTTCTTTGCAGGATTCTTGTGAGCGTTCTATCTTTCGTTGGCCTCGTACCAACACATGCTCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8970_9477_1:1:0_0:1:0_c2
+TCACCACATAACCCTCTAGAAGTCCCACTACTTAATACTTCAGTACTTCTAGGATCAGGTGTTTCAATTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8971_9479_3:1:0_1:1:0_8d
+CACCACATAACCCTCTAGAAGTCCCACTACTTAATACTTCCGTACTTCTAGGATCAGGTGTTTCAAATAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9092_9613_1:0:1_2:0:0_2
+CCTACTAATTCCACATTATACTAGGACTTTACTTCACCATCCTCCAAGCTTCAGAATACTTTGAAACATC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9120_9590_2:0:0_4:1:0_58
+TGTAGGGACGAAACCGGAATCATATCGATTTGCTTTTTCTGAGTACAGATTTATTTGGGGGAGTCAGAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9172_9684_3:1:0_3:2:0_93
+CAGCTGGTATCTATGGTTCTACAGTCTTCATGGCTACTGGATTCCAAGGACTCCAAGTAATTATTGGATC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9268_9779_0:0:1_2:0:0_35
+AGTTCATTCATATGCTAGTCCTAGAGATAGAATTGTGACTAGAATAAAGGCTATAATTATTATAGTAGAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9419_9998_0:0:0_0:0:0_a5
+AATAAGGATAATACTATGCCTTCCAGGCATAGTAATGTGGATATTAGGTGAGAGCGAAATATAAGTGTCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9427_9995_1:0:0_0:0:0_67
+TAGTAGATTCTGAATAAACCCAGAAGAGAGTAATTAACCTGTACACTGTTATCTTCATTAATATTTTAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9516_10028_1:1:0_0:1:0_66
+GTTGCATACTGACTCCCCCAAATAAATCTGTACTCAGAAAAAGCAAATCGATATGAATGCGGATTCGACC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9584_10157_1:0:0_1:1:0_97
+CCCTACAAGCTCTGCACGTCTACCATTCTCAATAAAATTTTTCTTTGTAGCAATTACATTTCTATTATTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9590_10121_3:0:0_4:1:0_a1
+AAGGTCTGCACGTCTACCATTCTCAATAAAATTATTCTTGGTAGCAATTACATTTCTATTATTTGACGTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9807_10285_2:1:0_1:1:0_9
+ATGGAAATTAGTTTAAAAAAAAATAATGATTTCGACTCATTAGATTATGATGCTGTTCATAATTACCAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9837_10360_1:0:0_3:0:0_9f
+TTCGACTCATTAGATTATGATGATGTTCATAATTACCAATATGCCATCTACCATCTTCAACCTCACCATA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9852_10323_2:0:0_3:1:0_48
+TATGATGAATTTCATAATTACCAATATGCCATCTACCTTCTTCAACCTCACCATAGCCTTCTCACTATCA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9859_10294_4:0:0_2:1:0_96
+ATGTTCATAATTACCAATATGCCATCTAGCTTCATCAACCTCACCATAGCCTTGTCACTATCACTTCAAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9927_10433_3:0:0_1:0:0_49
+GTTATTATCTTATTTTAGGTGGTTTTGGCTAGCTATTAATATTAGTGGCAGTAATCAGGCTGTTAAAATA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10069_10638_1:2:0_1:1:0_73
+GTTTTCGCAGCCTGCGAAGCAGCAGTAGTACTAGCCCTACTAGTAAAAGTTTCAAACACGTACGGACCAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10142_10667_2:0:0_1:1:0_78
+GATTAAGATGAGGGGAATTAGCAGTGGAATAGAACCGATTAGAGTATAAAATAGGAAATAAATCCCTGCG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10302_10782_0:0:0_2:0:0_7c
+TAAAAAGAAATGCTATTATTCATGCCAACCATAGTAAGTTGTTAGATCATGAAGCGTCTAAGGTGTGTGT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10343_10880_3:0:0_3:2:0_17
+TAATTTTAGAAGCATAGCTGCTAGACTTATTGACCCAGCAATTGGAGCTTCTACGTGGGCTTTTGGTCGT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10353_10841_3:0:0_2:3:0_65
+AATTGGAGCTTCTACGTGGGCTTTTGGTAGTCATAGGTGAACACCATATAATGGTATCTTAATAAGAAAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10386_10896_2:0:0_0:1:0_7a
+CCACTCATATTAATAGCTAGCCAAAACCCCCTAAAAAAAGATAATAACGTACTACAAAAACTCTACATCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10419_10935_3:0:0_2:0:0_80
+AAAAAAGATAATAACGTACTACAAAAACTCTCCAACTCAATACTAATCAGCTTACAAATTCTGCTAATCA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10608_11062_1:1:0_1:0:0_3e
+GCCATAACAAGTGCTATGTGGCTAACTGAGGAGTAGGCGATTAGTGATTTTAAATCTGTTTGGCGTAAGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11003_11394_5:0:0_0:0:0_99
+TGTATATTGAGTATATACCTGTAATAATAATGTTAATTCCTATAAGAATAATGGTAAAGTTTGATCAAGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11082_11563_0:0:0_1:1:0_15
+CCATGAAGCTTCATAGGAGCAACAATACTAATAATCGCACATGGCCTCACATCATCACTCCTATTCTGCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11137_11674_1:0:0_0:1:0_f
+CACTCCTATTCTGCCTAGCAAACTCCAACTACGAACGGATCCACAGCCGTACTATAAACATGGCCCGAGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11173_11673_2:1:0_0:0:0_3c
+GGATCCACCGCCGTACTATAATCATGGCCCTAGGACTTCAAATGGTCTTCCCACTTATAGCCACTTGATG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11221_11753_0:1:0_1:0:0_42
+GAAAATATTGATTACTTTTATTTGGATTTGCACCAAGGTTTTTGGTTCCTAAGACCACTGGATTACTATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11654_12160_3:0:0_2:1:0_37
+ACAAACATGGCTTTCTTACTATTATAGGATAATAGTAATCCATTGGTCTTAGGAACCAAAAACCATGGTG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11659_12180_2:0:0_1:1:0_47
+CATGGCTTTCTTAGTTTTATAGGATAATAGTAATCCATTGGTCTTAGGAACCCAAAACCTTGGTGCAAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11855_12332_0:1:0_0:0:0_be
+TTCTCATGAGTTTATGTTTAGGGAAAATCAAACTATAGCTAAAATGAATCCGATGTCTCCGATGCGGTTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11933_12373_1:1:0_2:1:0_26
+AACCTGGCACTGAGTTACCATAAATTCAATAGAACTTAAAATAAGCTTGAAAACTGACTTTTTCTCTATC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11964_12441_1:0:0_3:3:0_4d
+GAACTTAAACTAAGCTTCAAAACTGACTTTTTCTCTATCCTGTTTACATCTGTAGCCCTTTTTGTCACAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12006_12486_1:1:0_2:1:0_c7
+AGTGTAGTAGTGCTGAAACTGGTGTAGGGCGTTCTATTGCTTATGGTAGTCAAGGGTGGAGGCCAAATTG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12035_12474_2:1:0_0:2:0_5b
+CTGAAACTGGTGTAGGGCGTTCTATTGCTGATGGTAGTCATGGGTGGAGGCCAAATTGTGCTGATTTTCG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12076_12570_1:1:0_2:1:0_1b
+CAAACATCAAGCGATTCATTAAATAACTTACACTATTCCTGATTACCATGCTTATCCTCACCTCAGCCAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12078_12606_4:1:0_0:1:0_24
+AACATCAAGCGATTCATTAAAAATCTTACACTATACCTGATTCCCATTCTTATCCTCACCTCAGCCAACA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12121_12586_3:0:1_1:1:0_3b
+CCATGCTTATCCTCACCTCAGCCAACAACATATTTCAACTTTTGATAGGCTGAGAAGGGGTTCGGGAATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12131_12680_1:1:1_2:0:0_bc
+CCTCACCTCAGCCAACAACATATTTCAACTTATCATTGGCTGAGAAGGGGTGCGGGAATTAAATCTTTCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12133_12629_1:1:1_3:0:0_40
+TCACCTCAGCCAACAACATATTTCAACTTTTCAATGGCTGAGAAGGGGTGCGGGAATTAAATCTTTCCTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12276_12754_1:1:0_1:1:0_2a
+GACATCGGATTCATTTTCGCTATAGTTTGATTTTCCCTAAACATAAACTCATGAGAACTTCAACATATTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12285_12789_0:1:0_1:1:0_5
+GGCTATGAATGATTGAGCCAGAGCATATAACGAGTATAGGTTTGAAGAATGCGTGGGTACAGATGTGTAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12294_12826_1:2:0_2:2:0_6
+GCTATAGTTCGATTTTCCCTAAACATAAACTCATGAGAACTTCAACAGATTATATTGTCCAAAAACAACG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12318_12829_1:2:0_4:2:0_7b
+GTGATGTTTCCAATTTATCGGATGTTTTGTTCGTCTGCCAGGCTATGAATGATTTCGCCAGAGCATTTAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12407_12905_1:1:0_1:1:0_98
+CCCTGTTAGGAATGGTATTCCTGAGAGGGCGAGGCTTCCGATTACTAGGCATGATGCTGTGAATGGTATG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12475_12979_2:0:0_0:0:0_51
+CACTAGTACACTCAAGAACAATAGTAGTTGCAGGAATTTTCCTACTGGTCCGATTCCACCCCCTCACGAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12645_13100_3:0:0_2:1:0_1d
+ATTGCCTTCTCTACATCAAGCGAACTAGGCCTGATCATCGTGACGCTAGGAATAAACCAACCACACCTAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12693_13201_0:0:0_3:3:0_ad
+TTTTAAAAACATGGTATTGTTAGGACATGAATCCTGGTTGGTGGAATATTATATGAGATGACAAATCCTG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12843_13287_1:1:0_2:2:0_6c
+CTTTATTTATTTATAGTTTTATGCTAAGGTTGTTTATTTCTAGTGCGATTAGGAATCCTAATACTGAAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12931_13388_1:0:0_1:0:0_74
+AAGCAATTAATACCTGCAACACGAACGCCTGAGCCCTACTAATTACACTAATCGCCACTTCTATAACAGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12958_13479_0:0:0_1:2:0_5c
+CCTGAGCCCTACTAATTACACTAATCGCCACTTCTATAACAGCTATGTACAGCATACGAATCATTTACTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13075_13601_1:0:0_2:2:0_59
+AAAATGACCCAGACCTCATAAACCCAATCAAACGCCTAGCATTCGGACGCATCTTTGCAGGATTTGTCAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13151_13595_2:2:0_1:2:0_87
+TAATATTCCACCAACCAGCATTGCAGTCCTCACAATACCATGTTTTTAAAAAACCACAGGCCTAATTATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13193_13631_2:3:1_0:0:0_82
+TTTTTACAAAACCCAGCCCTAATTATTTCAGTCTTAGGATTCCTAATCGCACTAGAACTAAACAACCTTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13292_13836_1:0:0_1:0:0_a7
+TCCATATTCATCCTTCTCAACTTTACTGGGGTTTTTGCCATCTATTATTCACCGCATTACACCCATAAAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13353_13784_0:0:0_1:2:0_33
+TGATTATAGAGGTTATTTTAATTTGTGTGCTTAATTATTATGATGAAGCTCGAGTAATTAATCTTGATGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13356_13863_1:0:0_2:0:0_1c
+ATAAAATCTCTCAACCTAAGCCTACAAACATCCCTAACTCTCCTAGACTTGATCTGGTTAGAAAAAACCA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13429_13876_3:1:0_2:0:0_57
+CAAAATCCACCTCACCACTTCACACAAACATTACCACTTTAACAACCAACCAAAAAGGCTTAATTAACTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13663_14160_0:0:0_2:1:0_6a
+TTCCAACATAACTCCAACATCATCAACCTCATACATCAACCAATCTCCCAAACCATCAAGATTAATTACT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13815_14395_0:0:0_0:1:0_9e
+GCGTGTATAAATCGGATTAGTCACCCGTAATTTACGTCTCGACAAATGTGTGTTACTGATGAAAAGGCTG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13826_14258_1:0:0_0:0:0_c5
+CAAGTCTCTGGATATTGCTCAGTAGCTATAGCAGTCGTATATCCAAACACAACCAACATCCCCCCTAAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13921_14471_0:0:1_0:0:0_36
+AAACGATCCACCAAACCCTAAAACCATTAAACAACCAACAAACCCACTAACAATTAAACCTAACCTCCAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14039_14391_3:0:0_3:0:0_4b
+GTAAATATCGGATTAGTCACCCGAAATTTACGTGTCGACAAATGTGTGTTACTGATGAAAAGGCTGTTAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14070_14563_1:1:0_0:1:0_bd
+TTATTACTACACAGCATTCAACTGCGACCAATGACATGAAAAAACATCGTTGTAATTCAACTACAGAAAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14107_14610_1:2:0_0:2:0_8c
+GAAAAAACATCGTTGCAATTCAACTACAGAAACACCTAATGCCAAACATACGAAAAACACACCCATTATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14125_14614_1:0:0_1:2:0_19
+CCAATATATGGGATGGCTGATCGGAGGTTTGTAATAACTGTGGTACCTCAGAATGATATTTGTCCTCAAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14168_14690_2:0:0_2:0:0_2f
+GTGGAAAGCGAAGCATCGGGTCAAGGTGGCTTTGTCTACTGATAAGCCCCCTCAAATTCATTCGACTAGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14379_14856_2:1:0_0:2:0_41
+TTACGAATATGATTAGGATACCTAGGATATCTTTGATTGTATAGTAGGGGTGACATGGAATTTTATCTGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14458_14976_1:3:0_3:1:0_61
+GATCATATACATTTATAGAAACCTGAAAAATTGGACTACTTCTACTGTTCGCAGTCATATCCACAGCAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14464_14944_1:1:0_0:1:0_b7
+TGGGGTGGGGTGTTTAGTGGATTAGCTGGTATGTAGTTGTCTGGGTCTCCTAGTATGTCTGGGAAAATTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14473_14928_1:3:0_1:2:0_1
+GTGGATTAGCTGGTATGTAGTTGTCTGGGTCTCCTAGTATGTCTGGGAAATTTAATCCTAGGGTTATGAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14592_15040_1:0:0_0:1:0_39
+CTATCAGCCATCCCATATATTGGAACAACCCTAGTCGAATGAATTAGAGGGGGCTTCTCAGTAGACAAAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14660_15119_2:0:0_3:0:0_b3
+AGCCACCTTGACCCGATTCTTCGCATTCCACTTCATCTTACCATTTATTATCGGGGCCCTAGCAATCGTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14679_15226_1:1:0_2:0:0_3d
+TTCGCTTTCCACTTCATCTTACCATTTATTATCGCGGCCCTAGCAATCGTTCACCTCTTCTTCGTCCACG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14698_15195_1:2:0_0:0:0_c6
+CAATGATAATAAATGGGTGTTCTACTGGTTGGCCCCCAATTCAGGTTAAGATAAGTAGGTTGGCTACTAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14703_15218_4:2:0_3:0:1_a0
+TTTATTATCGCGGCCCTAGCAATCGTTCACCACTTCTTCCACCACGTAACAGGAAGAAACAACCCAACAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14792_15274_1:2:0_4:0:0_94
+AGAATTTTGTCTTCGATACTTCCTGAGCTTGGTAAAAGAATTAAGATGATTGAGAAGTATGAGATGGAGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14825_15378_0:3:0_2:1:0_7d
+AGATATCCTAGGTATCCTAATCATATTCGTAATTCTCATAACCCTAGTATTAAATTTCCCAGACATACTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14851_15357_4:2:0_3:1:0_5d
+GATGTCTTGAGAAGAGAAGCTCTTCATTTGAGGTTTACAAAACCAGAGTAATGTTTATACTATCAAGAGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_15077_15578_4:0:0_2:0:0_10
+GCAACGAAGCCTACTATTCCGCCCAATCACACAAATTTTGTACTGAATCCTATAAGCCAACCAACTTATC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_15119_15633_0:0:0_2:1:0_13
+CTGAATCCTAGTAGCCAACCTACTTATCTTAACCTGAATTGGGGGCCAACCAGTAGAACACCCATTTATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_15261_15717_1:0:0_0:2:0_29
+GAAGACAAAATACTAAAATTATATCCCTGTCTTGATAGTATAAACATTACTCTGGTCTTGTAAACCTGAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_15261_15721_0:0:0_1:2:0_5f
+GAAGACAAAATACTAAAATTATATCCATGTCTTGATAGTATAAACATTACTCTGGTCTTGTAAACCTGAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_15343_15804_3:2:1_2:1:0_11
+TCTTCTCAAGACATCAAGAAGAAGGAGCTACACCCCACCAACCAGAACCCTAATCTGGTATTCTAATTCA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_15560_16128_1:1:0_1:1:0_38
+TTTTGGGGTTTGGCATTAAGAGGAGGGGGTGGGGGGTTTGGAGAGTTAGAATTTGGTCTTGAGTAGCATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_15744_16179_0:1:0_0:2:0_4c
+AGGACATAGGGTTTGATAGTTACTATTATATGTCTTTCAAGTTCTTAGTGTATTTGGGGTTTGGCATTAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
Binary file samtools_fastx/test-data/samtools_fastx-out2-2.fastq.gz has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/samtools_fastx-out2-3.fastq	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,800 @@
+@chrM_235_738_2:1:0_0:0:0_ab
+TGTTTGATTCTTTTGCTTACTTTAATACCTTTTTAGGGTTTGCTGAAGATGGCGGTATATAGGCTGAATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_292_781_1:1:0_1:0:0_bf
+TTTCTTCCCATTACATTGGCTACACCTTGACCTAACGTTTTTATGTTTGATTCTTTTGCTTACTTTAATA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_293_831_0:1:0_1:0:0_b
+TAGTTTCATAAAGGGTATAGTAATGTTCTTTTATAAGAAAATGTAGCCCAATTCTTCCCATTTCATTGGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_361_902_2:3:0_1:1:0_8e
+CGTGTCAACAATAAATAAATAAATAGAATTAAAATCCAGCTTATATGTGAAAATTTATTGTTATGACCTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_364_806_2:3:0_0:0:0_54
+GTCAACAATAAATAAATAAATAGAATTAAAATCCACCTTATATGTGAAAATTTATTGATAGGACCTCAAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_406_958_3:0:0_1:1:0_c3
+TGTGAAAATTCATTGTTAGGACCAAAACTCAATCACGAAAGTAATTCTAGTCATTTATAATCCACGACAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_600_1083_1:1:0_0:0:0_77
+ACATTATATCCCTCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGCTCTACCTCACCATCTCTTGCTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_655_1179_0:1:0_1:2:0_60
+CTCTCTCCAATACTTTTAGTAGGATAAATGATTTGATTTATATAATAGTATAATTATATTTGTCTAGGGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_709_1253_2:0:0_2:1:0_23
+TTGTTCTTACTTTTAATTAGTCTTTGATCTTTCCCTTGCGGTACTAGTTCTATATCTCCAAGATGTACGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_713_1102_2:0:0_0:0:1_50
+ATTAAAGTAAGCACAAGAATCAAACATAAAAACGATAGGTCAAGGTGTAGCCAATGAAATGGGAAGAAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_748_1226_0:0:0_3:2:0_a
+TAGGTCAAGGTGTAGCCAATGAAATGGGAAGAAATGGGCTACATTTTCTTATAAAAGAACATTACTATAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_787_1256_2:0:0_1:1:0_5a
+TACATTTTCTTCTAAAAGAACATTACTATACCCTTTATGAAACTAAAGGACTAAGGAGGATTTAGTAGAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_820_1322_1:2:0_1:1:0_32
+CTGTAATTCTTTTAGTTAGAAGTTTTCTAGTTAGTTCATAATGCAAAAGGTACAAGGTTTAATCTATGCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_835_1289_4:2:0_0:1:0_44
+GACTAAGGATGATTTAGTAGTAAATTACGAATAGAGATGTTAATTGGATTGAGCAATGAAGTACGCACAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_846_1403_2:3:0_2:2:0_85
+ATCTTCTCACTCTTTTGCCACATAGACGAGTTGATGCATAACATTGTTTTGAGGTAGCTCGTTTGGTTTC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_961_1470_3:2:0_1:0:0_2c
+TCCGATTATGAGAGGACATAAGTCGTAACATGTTAAGGATACTGGAAAGTGTGCTTGGAATAATCATAGT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1023_1543_3:0:0_1:0:0_30
+AGCTGTCCCTCTTTTGGCTATAATCTAAACTTACATTTTGATTTTGTTGTTTTTTTAGCAAGTTTAAAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1053_1571_0:1:1_4:0:0_bb
+GGCCTACACCCAGAAGATTTCATGACCAATGAACACTCTGAACTAATCACCTAGCCCTAGCCCTAGACAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1370_1912_0:0:0_1:1:1_79
+GAGTACCTTTTATCTTTTGGATCTTTCCTTTAGGCATTCCGGTGATGGGTTAACAGAGAAGTTATAGGTG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1415_1865_4:0:0_1:2:0_5e
+GGTGAAAAGCCTCACGAGCATGGTGATAGGTGGTTACCCAAAAAATGAATTTAAGTTCCATTTTAAACTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1550_2018_2:0:0_0:1:0_e
+CAGGATACCGCGGCCGGTAAACTTTAGTCACTGGGCAGGCAGTGCCTCTAATACTTGTAATGCTAGAGGT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1614_2107_1:1:0_2:0:0_2e
+AGCAGCGACCAATAAAGAAAGCGTTCAAGCTCAACATAAAATTTAAATTAATTCCATAATTTACACCAAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1736_2168_2:2:0_0:1:0_a2
+CGTATGAGTGACAAGAATTCCAATTCTCCAGGCATACGCGTATAACAACTCGGATACCCGTTGTTAGTTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1762_2310_0:1:0_3:1:1_d
+TCCAGGCATACGCGTATAACAACTCGGATAACCGTTGTTAGTTAATCAGACTATAGGCAATAATCACACT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1881_2335_1:1:1_1:1:2_34
+AAAGGAAAAATCCAAAAGATAAAAGGAACTCGGCAAACAAGAACCCCGCCTGTTTACGAAAAACATCACC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1883_2385_1:1:1_0:0:0_1e
+AGGAAAAATCCAAAAGATAAAAGGAACTCGGCAAACAAGAACCCCGCCTGTTTACCAAAAAGATCACCTC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_1915_2407_1:0:0_2:0:0_c0
+CAAACAAGAACCCCGCCTGTTTACCACAAACATCACCTCTAGCATTACAAGTATTAGAGGCACTGCCTGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2004_2537_1:0:0_2:0:0_83
+GGCCGCGTTATCCTGACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAATTAGGGACTAGCATGAACGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2036_2630_1:0:0_3:3:0_af
+TTTATACATAAATTAAGTTGAGCGGGCTTATTTGTAAGGTGGCTCTAATTCTCTTGTCCTCTCGTACTAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2060_2566_0:0:0_0:2:0_89
+ACTAGCATGAACGGCTAAACGAGGGTCCAACTGTCTCTTATCTTTAATCAGTGAAATTGACCTTTCAGTG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2091_2559_1:1:0_3:0:0_6e
+AGAAATCGTAAATAGATAGAAACCGACCTGGATTGCTCGGGTCTGAACACAGATCACGTAGGCCTTTAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2143_2644_4:1:0_2:1:0_86
+ATAATACTAAGAGGAGAAGACCCAATGGAGCTTAAATTATCTAACTTATCTATTTAATCTATTAAACCTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2253_2831_2:1:1_2:2:0_b4
+GATTTTGCGATCTGCTAATGTTAGGAAGGCTATGTCGATTAGAATGGGGACGAGGAGTGTGAGGATATTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2319_2795_0:0:0_0:1:0_56
+GATTAGAATGGGGACGAGGAGTGTGAGGATATTAATAAAGAACACTATTAGGGAGAGGATTTGAACCTCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2789_3334_4:1:0_1:0:0_a3
+CGGTTTGTTTCTGCTAGGGTTGAGATAAATCATATTATGGCTATGGGTCAGGCTGGCAGAAGTCATCATA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2849_3341_2:0:1_1:0:2_75
+ACGAAACGGCCCTAACATTGTTGGTCCATACGGCATTTAACAACCATTTGCAGACGCCATAAAATTATTC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2870_3363_0:0:0_4:1:0_a9
+TGGTCCATACGGCATTTTACAACCATTTGCAGACGCCATAAAATTATTTATAAAAGAACCAATACGCCCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_2936_3340_3:0:0_5:0:0_b5
+GGGGCCCGGTTTGTTACTGCTAGGGTTGAGATCAATCATATTATGGCTAAGTGTCCGGCTGGCAGAAGTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3087_3568_1:0:0_2:1:1_76
+ATCCATAGGAATGTTTGATGAAAGTAGTCGAGCTTCTATTATGAAGTTAGTTGAGAAGAGTTCTGGTAAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3174_3643_1:1:0_4:0:0_72
+TATGAAGTAACCATAGCTATTATCCTTTTTTCAGTTCTATTAATAAATGGATCCTACTGTCTACAAACAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3213_3711_2:0:0_2:0:0_b2
+ATTTCTATAAGTATGGTGGTACTCCCGCTGTAAAAATTGGTCAAGAAATATGTCACATACATAATGCTAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3263_3744_2:0:2_1:1:0_1a
+CATATGATTACTTCTGCCAGCCTGACCCAGGCATAATATGATATATCTCAACCCTAGCAGAAACAAACCG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3355_3923_3:1:0_1:1:0_55
+AAGCAGAATCAGAATTAGTCTCAGGGTTTAACGTAGAATCCGCAGCCGGCCCATTCGCGTTATTCTTAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3395_3924_1:1:0_1:1:0_64
+ATAGGATTTATTAGTACGGGAAGGATTTAAACCAACGTTTTCGGGGTATGGGCGGGATAGCTTAATTAGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3398_3876_1:1:0_2:1:0_21
+TGGGCCGGATAGCTTAATTATCTGACCTTACTATTAGGATAAGGTGTTAAGGTAGCACGGAGAATTTTGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3617_4081_2:1:0_0:0:0_68
+TGCTGCTTCAGTTGATCGTGGGTTTTTTTTGTTGATTAGTATGGGGATAATTGCTAGTAGGCTGAATTCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3773_4214_3:0:0_1:0:0_aa
+TAGGACAAAAGGCATTGAACCTACACTTAAGAATTCAAAATTCTCCGTGCTACCTAAACACCATATCCTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_3821_4257_1:0:0_2:0:0_69
+AATCCGAAGTGGAATGGGGGGAGGCCTAGTTTTATGGATAGGGCTATTAATGTTATGTTAAGGATAAGAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4014_4643_2:0:0_2:1:0_8b
+AATTCAGCCTACTAGCAATTCTCCCCATACTAATCAACCAAAAAAACCCACGATCAACTGAAGCAGCAAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4351_4852_1:0:0_0:2:0_2d
+CCCGCTACTCAACTCTACTATCATTTTAATACTAGCAATTACTTCTATTTTCATAGGGGCCTGAGGAGGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4389_4907_2:1:4_2:1:0_43
+TTATAGCTAGGGTGGAAAATATTCGGTTGGGTTTAGTTTTTGTTTGGTGAGTTATTATTTTGGAGTTATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4433_5040_0:2:0_2:1:2_70
+AGGATGAAGTGTTTCAGTCCTTATCAGGTTAAACTTGAGTGTTTTCTTAGGGCTTTGAAGGCTCGCGGAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4451_4928_3:2:0_2:0:0_28
+GCCTATTCAGCAATTGCCCAAATAGGATGAATATTAGCAATTCTTCGTTACAACCCATCGCTCACACTAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4594_5169_2:0:0_1:0:0_27
+GCGGTAGAAGTAGATTGAAGCCAGTAATAGGGTATATAGCTGTTAACTAAATTTTCGTAGGTTTAATTCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4633_5057_1:1:0_0:1:0_3f
+ACTAACTATAATCTCACTGATCTTACTATCCCTAGGAGGCCTTCCACCACTAACCGGATTCTTACCAAAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4723_5166_3:1:0_1:0:0_7f
+GTAGAAGTAGATTGAAGCCAGTAATAGGGTATTTAGCTGTTAACTAAATTTTCGTAGTTTTAATTCCTGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4740_5317_2:2:0_2:3:0_46
+TAATAATAGCAACACTCATAGCAATAATAGCTCTACTATACCTATTCGTATATACTCGCCTAATTTATTC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4944_5486_1:0:2_2:1:0_4e
+AATTTGGTCATCTCCTAAAAGTGCACCTGGTTGACGTAATTCTGCGCGAATTAACATACTTAGTGCAGTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_4989_5463_0:1:2_1:1:0_9a
+CTAAGAAAACACACAAGTTTAACCTGATAAGGACTGAAAGACTTCATCCTACATCTATTGAATGCAAATC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5079_5628_3:1:0_1:0:0_45
+AAGACCTCAACTATTTTGGCAGGAATTAAACCTACGAAAATTTAGTTAACAGCTAAATACCCAATTACTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5081_5631_1:1:0_1:1:0_62
+GACCTCAACTAGTTTGGCAGGAATTAAACCTACGAAACTTTAGTTAACAGCTAAATACCCTATTACTGGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5235_5764_4:3:0_1:1:0_18
+GTTAGGTCTACTGCTGCTCCTGCATGGGCTAGATTTCCGGCTAGGGGTGGGTAGACTGTTCATCCTGTTC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5364_5814_0:2:0_0:0:0_ba
+TAATTGCACCTAAAATAGATGACACTCCAGCTAAATGAAGGGAGAAAATTGTTAGGTCTACTGATGCTCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5499_6008_3:0:0_1:2:0_53
+GTCCCCTCCTCCAGCGGGATCAAAGCAAGTTGTGTTTAGGTTGCGGACTATTAGTAGTATAGTAATGCCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5575_6058_0:0:0_0:1:0_3a
+TCCCACTAATAATCGGAGCCCCAGATATAGCATTCCCACGAATAAATAATATAAGTTTTTGACTCCTACC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5630_6213_1:0:0_0:1:0_91
+ATACTGTGAATATGTGGTGGGCTCATACAATAAAGCCTAGAAAGCCAATAGACATTATTGCTCATACTAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5666_6214_1:0:0_0:1:0_0
+AGCATCATCAATAGTAGAAGCAGGAGCAGGAACAGGATTAACAGTCTACCCACCTCTAGCCGGAAATCTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5735_6152_2:0:0_0:1:0_c1
+TCATACTATTCCTATATAGCCGAAAGGTTCTTTTTTTCCGGAGTAGTAAGTAACTACATGTGAAATGATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5817_6393_0:1:0_2:2:0_a8
+TTTATTACCACTATTATCAACATGAAACCCCCAGCCATAACACAGTATCAAACTCCACTATTTGTCAGAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5893_6392_1:2:0_0:2:0_22
+TCCCGTTAGACCACCAACTGTAAATAAGAAAATAAAGCATAAGGCTCATAGTATAGCTGGAGATCATTTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5902_6370_4:1:0_3:2:0_8f
+CCGTACTGCTGCTATTATCACTACCAGTTCTACCCGCAGGCATTACTATACTACTAACAGACCGCAACGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_5923_6445_3:2:0_1:2:0_b8
+TACCAGTGCTACCCGCAGGCATTACTATACTACTAACAGAGCGCAACCTACACAGAACTTGCTTTGATCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6034_6497_2:3:0_0:1:0_4a
+GATTCTATGAGCACCCAGAAGTTTAAATTCTTATCCTCCCAGGATTTGGATTCATTTCACATGTAGTTAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6047_6600_1:2:0_1:0:0_ac
+ATGTTATGTTTACTCCTACGAATATGATGGCGAAGAGGGCTTTTGCTCATGTGTCATCTAGGGTGAAGCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6123_6649_2:0:0_2:0:0_b9
+GAACCTTTCGGCTATATAGGAATAGTATGAGCAATAATGTCTATTGGCTTTCAAGGCTTTATTTTATGAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6135_6597_0:0:1_2:0:0_90
+TTATGTTTACTCCTACGAATATGATGGCGAAGTGGGCTTTAGCTCATGTGTCATCTAGGGTGCAGCCTGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6242_6759_1:2:0_2:2:0_9b
+TACATCAGCCACTATAATTATCGCAAAACCTACCGGTGTCAAAGTATTTAGCTGACTTGCAACCCTATAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6286_6744_2:2:0_1:1:0_c4
+AAATTATAAAGATCATGATGAGAACAGCTGTTAGTGAAATAAATGATAGTATAGAAGAGACAGTGTTTCA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6288_6809_0:2:0_1:1:0_a6
+TCATTCTAAATTTGTTGAAGGATACGATACTGATATTACTTCTCGTTTTGTAGCAAAGGCCTCTCAAATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6468_6879_3:1:0_3:1:0_12
+TCCTTTCTTATTATACTTTTACATAGGTTGGTTCCTCGAATGTGTGATAAGGTTGAAGGCAGCCATGAAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6618_7072_3:0:0_2:0:0_88
+CTGGGCCTTTCAGGAATACCACGACGCTACTCATACTACCCAGATGCTTACCCCACCTGAAACACTGTCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6660_7121_1:1:0_0:1:0_b6
+GATGCTTACACCACATGAAACACTGTCTCTTCTATAGTATGATTTATTTCACTAACAGCTGTTCTCATCA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6680_7101_1:1:0_2:1:0_c
+CACTGTCTCTTCTATAGTATCCTTTATTTCACTAACAGCTGTTCTCATCATGATCTTTATAATTTGAGAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6686_7208_1:1:0_0:0:0_3
+TTCAAATGGTTTCAACTTCTTGTGCATCTATTGTGCTTGTATGTGTTAGTTTTGTTGTTAATATTAGCGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6696_7251_0:2:0_1:2:0_16
+GAGGGGAGAGCAATTATGATAAGGATCACAGCTGGTAGAATACTTCAAATGGTTTCAACTTCTTGTGCAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6717_7185_3:1:0_2:0:0_71
+GCATCTATTGTGGTTGTATGTGTTAGTTTTGTTGTTAATATTAGCGAGATGATATAGAGGAGTAAGGAGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6762_7357_1:0:0_2:1:0_8a
+GTCTTCATAGACAGTATATTCGTAGCTTCAGTAACCTTGGTGCCCTATGGTTTTAACGGTTAATACGGGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6802_7288_1:0:0_0:2:1_81
+TAGAATGACTTCATGGCTGCCCTCCACCATATCACACATTCGAGGAACCAACCTCTGTAAAAGTAAAATA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6823_7377_2:1:0_2:1:0_a4
+ATATATGAATCCAAGCATACGTCTTCATAGTCCGTATATTCGTAGCTTCAGTATCATTGGTGCCCTATGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6856_7411_3:0:0_3:1:1_4
+TAGTTCACCAGGTTTTAGGTCGTTTGTTGGCTTCTATATGAATGAAAGCATACGTCTTCATAGTCAGTAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6883_7266_2:1:0_0:1:0_b1
+TATAGAATGCGTAGAGAGGGGAGAGCAATTATGATAAGGATTACAGCTGGTAGAATAGTTCAAATAGTTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6908_7324_0:3:0_0:2:1_52
+ACATTGGTGCCCTATGGTTTTAACGGTTAATACGGGGTTGTTGATTTTGGTCTATTATATATAGAATGCG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_6957_7445_0:1:0_0:1:0_84
+TCAATTTCATAACTTTGTCAAAGTTAAATTATAGATCAATAATCTATATATCTTATATGGCCTACCCATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7024_7550_0:0:0_0:0:0_31
+TTAGTCGGCCTGGGATGGCATCAGTTTTAAGTCCTAGGGAGGGGACTGCTCATGAGTGGAGGACGTCTTC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7076_7590_1:1:0_1:0:1_6f
+AATTTCCATGATCACACACTAATAGTTGTTTTCCTAATTAGCTCCTTCGTCCTCTATATCATCTCGCTAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7104_7635_2:0:0_1:1:0_ae
+TATTCCTAATTAGCTCCTTAGTCCTCTATATCATCTCGCTAATATTAACACCAAAACTAACACATACAAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7289_7847_3:2:0_1:1:0_7e
+CCCGTATTAACCGTTAAAACCATAGGGCACCAATGTTACTTAAGCTACGAATAAACTGACTATGAAGCCG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7513_8064_1:0:1_0:1:0_1f
+TTGGAAAGAATGGAGACGGTTTTTGATTAGGCGTTTTGAGGATGGGAATAGGATTGAAGGAAATATAATG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7711_8089_3:2:0_0:1:0_8
+TAAGAGCGTTAACCTTTTAAGTTAAAGTAAGAGACCTTCAAATCTGCATAGTGATATGCGAGAACTAGAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7734_8225_2:3:0_1:1:0_9d
+AAAGTAAGAGACCTTAAAAACTCCATAGTGATATGCCAGAACTAGATACATCAACATTATTTATTACAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7759_8313_1:2:0_1:3:0_20
+TAGTGATATGCCAGAACTAGATACATCAACAAGATTTATTACAATTATCTCATCAATAATTACCCTATTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_7862_8397_1:2:0_0:1:1_9c
+TTCCCACTGGCACCTTCAGCAAAATCACTAACAAACATAAAAGTAAACACCCCTTGAGAATTAAAATGAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8006_8435_2:1:0_2:1:0_95
+AATAAGTGTCCTGCAGTAATATTAGCTTTAAGCCGGACTGCTAATGCGATTGGTTGAATAAATAGGCTAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8092_8707_0:2:0_2:0:0_25
+CATATTACTAGACCTGATGTTAGAAGTAGGGCTGAAAAGGCTCGAGTTAATGGTCATGGACTTGGATTAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8156_8604_3:1:1_1:0:0_6b
+TGTATTATCATGTAGATATAGGCTTACTAGGAGGGTGACTACGTAGGCTTGAATTAATGCTACTGCAAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8225_8694_3:4:0_2:0:0_b0
+CTGATGTTAGAAGGAGGGCTGAAAAGGCTCCAGTTAATGGTCATGGCCTTGGATTAACTATGTGCTATGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8286_8815_1:2:0_4:0:0_4f
+ACTAAGAAGCTCACTTGCCCACTTCCTTCCACAAGGAACTCCAAATTCACTAATTCCAATACTTACTATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8372_8947_0:1:0_2:3:0_63
+CCTCCTAGCTCATGTGTTGGTACGAGGCCAGAAAGATCGAACTCTCAGAAGAATCCTGCAAAGAAAAATA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8450_8856_3:2:1_2:0:0_6d
+TTATACGATATCGTAGACCTTTTTGTACAATAGGAGTGTGGTGGCCTTGGTAGGTTCCTTCACGAATTAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8506_9018_2:0:0_3:2:0_92
+GAAGTACTGAAGTATTTAGTAGTGGGACTTCTAGAGGTTTAAGTGGTGAAATTCTTGTTGGAGGTGAGCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8661_9208_2:0:0_0:1:0_14
+ACTGGAGCCTTTTCAGCGCTCCTTCTAACATCAGGTCTAGAAATATGATTTCACTATAATTCAATTACAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8836_9300_1:0:0_0:0:0_7
+AAGGACTACGATATGGTATAATTCTATTCATCGTCTCGGAAGTATTTTTCTTTGCAGGATTCTTCTTAGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8874_9317_3:2:1_2:0:0_2b
+GGCTTCAAATCCGAAGTGATGTTTTGATGTGAAGTGAAATATTAGTTGTCGTAGTAGGCACACAATAAGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8970_9477_1:1:0_0:1:0_c2
+TAACAGTGTACAGGTTAATTACTCTCTTCTGGGTTTATTCAGAATCTACTAATTGGAAGTCAGTTATCTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_8971_9479_3:1:0_1:1:0_8d
+GATAACAGTGTACAGGTTAATTACTCTCTTCTGGGTTTATTCAGAATCTACTAATTGGCAGTCAGTTATC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9092_9613_1:0:1_2:0:0_2
+GAGAATGGTAGACGTGCAGAGCTAGTAGGGTCGAATCCGCATTCATATGGATTTTCTTTTTCTGAGTACA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9120_9590_2:0:0_4:1:0_58
+TACTTCACGATCCTCCAAGCTTCAGAATACTTTGAAACATCAATCTCCATTTCAGATGGTATCTATGGTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9172_9684_3:1:0_3:2:0_93
+GCAGTGGAATTAGTATAGCAATTTCTATGTCAAATAATAGAAATGTAATTGCTACCAAGAAAAATTTTAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9268_9779_0:0:1_2:0:0_35
+GACAACTAAAATTTCACTTCACATCAAAACATCACTTCGGATTTGAAGCCGCAGCCATGATACTGACATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9419_9998_0:0:0_0:0:0_a5
+CTTCCAATTAGTAGATTCTGAATAAACCCAGAAGAGAGTAATTAACCTGTACACTGTTATCTTCATTAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9427_9995_1:0:0_0:0:0_67
+AAGGATAATACTATGCCTTCCAGGCATAGTAATGTGGATATTAGGTGAGAGCGAAATATAAGTGTCCCTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9516_10028_1:1:0_0:1:0_66
+GAGTTTAGGGAAGTTACTGAAGTTATAATATATAAGGATAATACTATGCCTTCCAGGCATAGTAATGTGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9584_10157_1:0:0_1:1:0_97
+TTGAGATTTTGGACGTAATCTGTTCCGTACGTGTATGAAACTTTTACTAGTAGGGCTAGTCCTACTGCTG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9590_10121_3:0:0_4:1:0_a1
+GAAACTTTTACTAGTAGGGCTAGTCCTACTGCTGCTTCGCATGCTTCGAAAACACAGATGGTGATGGGGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9807_10285_2:1:0_1:1:0_9
+GTTAGGGTGGTTAAACTAATTAGAAAACTATATGAGGTTACGTTTTTTCAGGTTTTTTTAGGGCTTGATA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9837_10360_1:0:0_3:0:0_9f
+AATGGTGTGGATAGGGGGTCTGAGGATAATATATTTGAAACGTTTTTATAAATTTCGTCGGTTTGTCATA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9852_10323_2:0:0_3:1:0_48
+AAAAGTTTATATAAATTTCGTCGGTTTGTGATAGAAGTGTTAGGCTGGTTAAACTCATTAGAAAACTATA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9859_10294_4:0:0_2:1:0_96
+CATAGAAGTGTTCGGCTGGTAAAACTAATTAGAAAACTATATGAGGTTACGTTTTTTCAGGTTTTTTTAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_9927_10433_3:0:0_1:0:0_49
+AGGGACACATATATTTCGCTCTCACCTAATATCCAGATTACTATGCCTGGCAGGCATAGTATTATCCTTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10069_10638_1:2:0_1:1:0_73
+TAGAACCGATTAGAGTATAAAATAGGAAATAAATCCCTGCGTTTAGGCGTTCAGTTTGGTTGCCTCATCG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10142_10667_2:0:0_1:1:0_78
+ACGTCCAAAATCTCAACCTACTACAATGCTAAAAATTCTTCTTCCCTCACTAATGCTACTACCAGTAACC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10302_10782_0:0:0_2:0:0_7c
+GACGAAAATTATAAAAACTTTTCAAATATATTCTCCTCAGACCCCCTATCCACACCATTAATTATTTTAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10343_10880_3:0:0_3:2:0_17
+CCCCCTATCCACACCATTACTTATTTTAACAGCCTGAATACTGCCACTAATATTAATCGCTAGCCAAAAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10353_10841_3:0:0_2:3:0_65
+ACACCATTAATTATTTTAACAGCCTGATTACTGCCACTAATATTAATAGCTAGCCCAAACGACGTAAAAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10386_10896_2:0:0_0:1:0_7a
+TTATTCCGTAACTACCTAATTTTAGAAGAATAGCTGCTAGAATTATTGACCCAGCAATTGGAGCTTCTAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10419_10935_3:0:0_2:0:0_80
+TATATTTTGTTAGTGGGTCTAGAATAATGGAGATGCGAAATAATCCGTAACTACCTAATTTTAGAAGAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_10608_11062_1:1:0_1:0:0_3e
+TATTTCCTATTTTATACCCTAATCGGTTCGATTCCACTTCTAATTGCCCTCATCTTAATCCAAAACCATG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11003_11394_5:0:0_0:0:0_99
+AACAGATTAAAAATGACTCATCGCCTCCTCCTCAGTTCGCCACATAGCACTTGTTATTGCATCAATCATA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11082_11563_0:0:0_1:1:0_15
+TTTTGTAGACTATATTCACATATTGTCCGGCCTGTAATTAGTTTTGGACTGGTAGTTAGAAGAATAAGTG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11137_11674_1:0:0_0:1:0_f
+AAGTAAGAAAGCCATGTCTTTAAACATGGAAGCATGAATTAGCAGTTCTTGCAATCTTTCTTGGTGAATA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11173_11673_2:1:0_0:0:0_3c
+AGTAAGAAAGCCATGTTTTTAAACATGGAAGCATGAATTAGCAGTTCTTGCAATCTTTCTTGGTGAATAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11221_11753_0:1:0_1:0:0_42
+TCCCACTTATAGCCACTTGATGACTGATAGCAAGTCTAGCTAATCTAGCTCTACCCCCTTCAATCAATCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11654_12160_3:0:0_2:1:0_37
+AGTTGAAATATGTTGTTGGCCGAGGTGAGGATAAGCATGGTAATCAGGAATAGAGTAAGATAATTAATGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11659_12180_2:0:0_1:1:0_47
+CCCCTTCTCATCCAATGAAAAGTTGAAATATGTTGTTGGCCGAGGTGAGGATAAGCATGGTAATCAGGAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11855_12332_0:1:0_0:0:0_be
+ATCAATCAAATTCTCCTTCATTATTAGCCTCTTACCCCTATTAATATTTTTCCACAATTATATAGAATAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11933_12373_1:1:0_2:1:0_26
+ATTAGATTGTCGTTGTTGTTGGAGAATATAATAAGTTGAAGTTCTCATGAGTTTAAGTTTAGGGAAAATC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_11964_12441_1:0:0_3:3:0_4d
+GTAGTCATGGGTTGAGGCCAAAATGTGCTGATTTTCGTGTAGCAGAGATTAATAGTCCTATAAGTGGAAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12006_12486_1:1:0_2:1:0_c7
+TGTACATCTGTAGCCCTTTTTGTCACATGATCAATTATACAATTCTGTTCATGATATATACACTCAGACC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12035_12474_2:1:0_0:2:0_5b
+ATCAATTATACAATTCTCTTCATGAAATATACACTCATACCCAAACATCAAGCGATTCATTAAATATCTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12076_12570_1:1:0_2:1:0_1b
+TCGTTGTTAAAATACAGTTATTATTAGTCGTGAGGGGGTGGAATCGGACCAGTAGGAAAATTGCTGCAAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12078_12606_4:1:0_0:1:0_24
+CTGTAAATAATGTGGTTAGGGCTCCGAGGCAAAGTATAGTTGTTAAAATACAGTTATTATTAGTCGTGAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12121_12586_3:0:1_1:1:0_3b
+GCTCCGAGTCAAAGTATAGTTGTTAAAATACAGTTATTATTAGTCGTGAGGGGGTGGAATCGGACCAGTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12131_12680_1:1:1_2:0:0_bc
+TATCAGGCCTAGTTGGCTTGATGTAGAGAAGGCAATGATTTTTTTGATGTCGTTTTGGGTGAGATCCCAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12133_12629_1:1:1_3:0:0_40
+GTTTTGGGTTAGAGCACCCATAGCTGTAAATAATGTGGTTAGGGCTCCGAGGCAAAGTATAGTTGTTAAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12276_12754_1:1:0_1:1:0_2a
+ATAGGTTTGAAGAATGCTTGGGTACAGATGTGTAGGAATGCTAGGTGTGGTTGGTTTATTCCTAGCGTCA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12285_12789_0:1:0_1:1:0_5
+TTCATTTTAGCTATAGTTTGATTTTCCCTAAACATAAACTCATGAGAACTTCAACATATTATATTCTCCA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12294_12826_1:2:0_2:2:0_6
+ATTTTTCCTATTTTTCGGATGTTTTGTTCGTCTGCCAGGCTATGAATGATTGAGCCAGAGCATATAAAGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12318_12829_1:2:0_4:2:0_7b
+ATAAACTCATGAGAACTTCAACAGATTATATTCTCCAAAAACAACGACAATCTAATTCCACTAATAGGAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12407_12905_1:1:0_1:1:0_98
+AAAATCAGCACAATTTGGCCTCCACCCATGACTACCATCAGGAATAGAACGCCCTACACCAGTTTCAGCA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12475_12979_2:0:0_0:0:0_51
+AGTGTAATTAGTAGGGCTCAGGCGTTGGTGTTGCAGGTATTAATTGCTTCAATAATTAGGTCTTTTGAGT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12645_13100_3:0:0_2:1:0_1d
+TGGGTTTATGAGGTCTGGGTCATTTTCGTTAATGGAGATTAGGGGGGAAAAACGCGGTTTTGTTCTTTTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12693_13201_0:0:0_3:3:0_ad
+GGAATAAACCAACCACACCTAGCATTCCTACACATCTGTACCCACGCATTCTTCAAAGCTATACTCTTTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12843_13287_1:1:0_2:2:0_6c
+TTCACATCATCATGCCTAGTAATCGGAAGCCTCGCCCTCTCCGGAATACCATTCCTAACAGGGTTCTACT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12931_13388_1:0:0_1:0:0_74
+GGATGTTTTTAGGCTTAGGTTGAGAGCTTTTATGGGTGTAATGCGGTGAATAATAGATGGGAAAAACCCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_12958_13479_0:0:0_1:2:0_5c
+GGTTGGTTGTTAAAGTGGTAATGTTTGTGTGAAGAGTTGAGGTTGATCTTGGGATGGTTTTTTCTAACCA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13075_13601_1:0:0_2:2:0_59
+GATCTTTGATTGCGGGTATTTCTATTATTATCGAGATTACTCGCGATTAATTGAGTATAAGATAATAGTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13151_13595_2:2:0_1:2:0_87
+TGTTTGCGGGTATTTCTATAATTATCGAGATTACTCGAGATTAATTGAGTATAAGATAATAGTTAAGATG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13193_13631_2:3:1_0:0:0_82
+GTGCTACTTGAATGATGGTAGTAGCTGGGTGATCTTTGTTTGCGGGTATTTTTATTATTATCGAGATTAC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13292_13836_1:0:0_1:0:0_a7
+CCAGAGACTTGGGGATCTAACTGATTAATATTGGGTTTTTTAGTATTGGGGGTGATTATAGAGGTTTTTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13353_13784_0:0:0_1:2:0_33
+CCCATAAAATCTCTCAACCTAAGCCTAAAAACATCCCTAACTCTCCTAGACTTGATCTGGTTAGAAAAAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13356_13863_1:0:0_2:0:0_1c
+ACGAGTGCTATAGCTACTGAGGAATATCCAGAGACTTGGGGATCTAACTGATTAATTTTGGGTTTTTAAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13429_13876_3:1:0_2:0:0_57
+TGTGTTTGGATATACGCCTGCTATAGCTACTGAGGAATATCCAGAGACTTGGGGCTCTAACTGATTAATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13663_14160_0:0:0_2:1:0_6a
+TTCGTATGTTTGTCATTAGGTGTATCTGTAGTTGAATTACAACGATGTTTTATCATGTCATTGGTCGCAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13815_14395_0:0:0_0:1:0_9e
+AGTTAGATCCCCAAGTCTCTGGATATTCCTCAGTAGCTATAGCAGTCGTATATCCAAACACAACCAACAT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13826_14258_1:0:0_0:0:0_c5
+TCCTAGAAGGGACCCAAAGTTTCATCATGATGAAATGTTGGATGGGGCAGGTAGGTCAATGAATGAGTGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_13921_14471_0:0:1_0:0:0_36
+AAATGTATATGATCCATAATATAAGCCTCGTCCGACATGAAGGAATAAGCAAATAAAAAATATTGAGGCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14039_14391_3:0:0_3:0:0_4b
+AATGAACTTAAAACAAAAATATAATTATTCATTATTTCTACACAGCAAACAACTGCGACCACTGACATGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14070_14563_1:1:0_0:1:0_bd
+AATGATATTTGTCCTCATGGAAGGACGTAGCCTATAAATGCTGTGGATATGACTGCGAACAGTAGAAGTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14107_14610_1:2:0_0:2:0_8c
+TATATGGGATGGCTGATAGGAGGTTTGTAATAACTATGGTACCTCAGAATGATATTTGTCCTCATGGAAG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14125_14614_1:0:0_1:2:0_19
+TTCAACTACAGAAACACCTAATGACAAACATACGAACAACACACCCATTATTTAAAATTATTAACCACTC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14168_14690_2:0:0_2:0:0_2f
+CCCATTATTTAAAATTATTAACGACTCATTCATTGACCTACCTGCCCCATCCCACATTTCATCATGATGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14379_14856_2:1:0_0:2:0_41
+ATCCGATTTATACACGCAAACGGAGCCTCAATAATTTTTATTTGCTTATTCCTTCATGTCGTACGAGGCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14458_14976_1:3:0_3:1:0_61
+ATGCAAATAGGACATATTATTCGGGTTTAATATGGGGTGGGTAGTTTAGTGGATTAGCTGGTATGTAGTT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14464_14944_1:1:0_0:1:0_b7
+ATACATTTATAGAAACCTGAAAAATTTGAGTACTTCTACTGTTCGCAGTCATAGCCACAGCATTTATAGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14473_14928_1:3:0_1:2:0_1
+TAGAAACCTGAAAAATTGGACTACTTCTACTGTTCGCAGTCATATCCACAGCATTTATAGGCTACGTGCT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14592_15040_1:0:0_0:1:0_39
+AGGATTGATAAGATTAAGGCTAGGACACCTCCTAGTTTATTGGGGATTGAGCGTAGAATGGCGTATGCAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14660_15119_2:0:0_3:0:0_b3
+GTACAAAATTTGTGTGATTGGGCGGAATATTAGGCTTCGATGCTTTGAGGTCTGAAGGAAAGGTATAAGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14679_15226_1:1:0_2:0:0_3d
+ATTGAGAAGTATGAGATTGAGGCTAGTTGGCCAATGATAATACATGGGTGTTCTACTGGTTGGCCCCCAA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14698_15195_1:2:0_0:0:0_c6
+TACCATTTATTATCGCGGCCCTAGCAATCGTTCACCTCTTCTTCCTCCACGTAACAGGATCAAACCACCC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14703_15218_4:2:0_3:0:1_a0
+GTATGAGATGAGGCTAGTTGTCCAATGATAATAAAAGGGTGTTCTACTGTTTGGCCCCCAATTCAGGTTA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14792_15274_1:2:0_4:0:0_94
+TAAAATTCCATGTCACCCCTACTATACAATCAAATATATCCTAGGTATCCTAATCATATTCGTAATTCTC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14825_15378_0:3:0_2:1:0_7d
+GGGGAGTAGCTCCTACTTCTTGCTGTCTTGAGCAGAGAAGATCTTCATTTCAGGTTTACAAGACCAGAGT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_14851_15357_4:2:0_3:1:0_5d
+TCGTAATTCTCATAACCCTAGTATTAATTTTCCCAGACAAACTAGGAGAGCCAGACAACTCGATACCAGC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_15077_15578_4:0:0_2:0:0_10
+TTTAAGATAATATTCATGGTATATATATTGATTTATGTTGATGATTATTTTATTACCTTAACCATTGATT
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_15119_15633_0:0:0_2:1:0_13
+TGTATGGTGTATGTCAGATAACACAGAAAAGTCCTTATAACATTAGTTTAATGTGGTTAAGATAATATTC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_15261_15717_1:0:0_0:2:0_29
+CGGGTTGTTGGTTTCACGGAGGATGGTAGCTTAATAGACTAAATGGGGAAGGGGATAGTCATATGGAAGA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_15261_15721_0:0:0_1:2:0_5f
+TGGGCGGGTTGTTGTTTTCACGGAGGATGGTAGCTTAATAGACTAAATGGGGAAGGGGATAGTCATATGG
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_15343_15804_3:2:1_2:1:0_11
+GCAGTAAGAACCAGATGTCTGATAAAGTTTCAGTTTAGCTACCCCCAAGTTTAATGGGCCCGGAGCGATC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_15560_16128_1:1:0_1:1:0_38
+CCATGAATATTATCTTAACCACATTAAACTAATGTTATAAGGCCATATCTGTGTTATCTGACATACACCA
++
+2222222222222222222222222222222222222222222222222222222222222222222222
+@chrM_15744_16179_0:1:0_0:2:0_4c
+GGGCCCATTAAACTTGGGGGTAGCTAAACTGAAACTTTATCAGACATCTGGTTCTTACTTCAGCGCCATC
++
+2222222222222222222222222222222222222222222222222222222222222222222222
Binary file samtools_fastx/test-data/samtools_fastx-out2-3.fastq.gz has changed
Binary file samtools_fastx/test-data/samtools_fastx-out3-1.fasta.gz has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/samtools_fastx-out3-2.fasta	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,396 @@
+>chrIII_58852_59360_5:0:0_4:0:0_4
+TCCAATTCCTTAGAAAACGCGGTCTTTCTCAACTGTACATAGTAATCTATCTGGTCCAGCCAATTGCACTTAGCACGGTCCCAGGGCGTATTCACTTGGGTCCTGGCATCCAGAAACGCCTCCACACAGCCCTCGATCTTGCCGCTTCCTGTACGGTCCTTCACTAATCCTCTGACAGAGATCGTCCCATTACTTAGTTT
+>chrIII_65894_66394_3:0:0_8:0:0_1
+ATTATTTTCGTTAGTGTTCGGTTTCCAAGTTAGAAATAATCTACTGGAAAACCTTTGGGATCAACCCAAGCTTACTCATTCTGATTTTCACAGCGTTTCTGTGACCGTCTAGACCCTCCTTCTTGGCAACGCACATAACAGCTCTACCGATGTTTTCTAAACCTTCAGGTGTAATGTTTTGGGCAGTGATCAACTTTTGG
+>chrIII_80246_80792_1:0:0_3:0:0_0
+TTTTCTCTTTTCGCCAATTCAAATTTCTCAGGCTCAAATATTTCATCAATCAGTGTAGCGACGTTGGAACTTGTTCTCTTTGCATCCTTTTCAATGTACTCCCAATCATCATCATCTATTAGGTTAGTAACGTTTGATAATGATTTTGATGTTAGTGAGGTTCTTTTTGTATTAGGCATATAAGATAATCTTTTGCTTGA
+>chrIII_209470_209900_3:0:0_9:0:0_2
+GGGTTCTGTGGCCAGCCATCTCCTGAATATCAGAAAAATAGTGCGTGTATAAAATCTACGTATACTAACTCTGGGTAAAGTAAACCTTTTTGTACTGTATTCTTTTTTTTTTTTTTGGTTTCCCGTCGTGATGACGTACGTGTATAGAGAATTGAAGCGAAAATAAAAAAAACGACAGAAAATATAGTTCTCCTTGGCTT
+>chrIII_238949_239533_6:0:0_6:0:0_3
+GTCACATATTCTTTGCTTCAATTGCTCTCTAGGAAACTGACACACTCGTAGATTGGAAGACCGAAGAAAATAGATAGACTTTCGAATAAGTTCAGCAACAACCTGTGGATGAAATCCTTGCTGCTCTGCCTGTACTCCTTAGTACTCTGCCAAGTCCACGCTGCACCTTCATCATGGAAGCAGATTACCTCCAAGGATGA
+>chrII_128532_129141_1:0:0_5:0:0_c
+ATGACTTGTTCCGTGTGGATTTCCAAACTTGATGTGGGCTGGGCATTATAGGGAGTTTGAAGGGTCTTCACTGTTGCTGATGGAATTTCTCTGGTATCTTCAAACTCATCATCGTCTGAAGAGGATGAATCGCTTTCGTCAATATGCAATTCCTGAATTGGTGGAAACTCTTCATATATTGTCTTTGCTTTTGGTTGAGC
+>chrII_178741_179333_0:0:0_5:0:0_7
+TTAACAGGCCATTCTTCCGATTTTCTGTAGGCGGTATGACGGACGAGGCAGAAATAAAAGGTCATAGGAGAACGTATATTGGTGCCTAACCTGGCAGAGTAGTTCAAGCATTAAAGAAGTGCCAAACTCAACATCCTTTGATTTTGATAGATGAAATCGATAAGATTGGACACGGCGGCATACACGGCGATCCGTCCGCG
+>chrII_185770_186311_6:1:0_5:0:0_6
+AGCCTCCCCTGTGCAGGCATGGGGAGGAATCCATGCTGAAAACATCGAAAACTTCGGCGAATCCAGGTAGAAAGTTCTGGATTTGCAAGAGATCACGGGGTGATTCAAATAATACAGAAAGATCATGTGGGTTTTATCAGTGGGTTTAAATATGAAAACGTCAGCTTATATTTTGGGAGAATAAAACACTTTCTTCTATG
+>chrII_371362_371914_8:0:0_3:0:0_5
+GCAGATCGTTTTCCGTCTGGCTTGAAATGTTCTAGTCTCCTTTTTTTCTTGGCTTCGGGAAAATACGATTTGTTTGTTAATCTATATGCAGAGCCGCTGCTCTGCATGGATTTATGATCTCGAGTGCCATTGAACTTGAAGCATCTTATGTTGAAAGGATTTGTATGCCATCATACCCGAACTTTTTTAGCACGTGAAAA
+>chrII_462520_463118_3:0:0_3:0:0_b
+ACTGAAGCATCTGCACCTTCTACTGAAGAGGCGGAGCCAGCCGCTTCCAGAGATGCTGCAAAACAACAAGATGAAACCGCTGCTACAACGATAACTGTAATCAAACCTACTTTGGAAACAATGGAAACAGTGAAAGATGAGGCCAAAATGCGTGAGGAAGAGCAAACATCTCAAGAAAAATCCCCACAGGAGAACACACT
+>chrII_464058_464495_1:0:0_2:0:0_1
+TTGTTGTTGTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTGCCTGCGCCTGTGCTTGTGCTTGTGCCTGTGCTTGTGCTTGTGCTTGCGCTTGTGCATGTGCTTGTGCTTGTGCTTGTGCCTGTGCTTGCGCCTGTGCTTGTGCTTGTGCTTGCGCTTGTGCTTGTGCTTGTGCTTGAGCTTGTGCTTGTGCTTGAGGTT
+>chrII_482749_483235_3:0:0_1:0:0_0
+TTATATGACTATGGTCCACCAGGTTGTGCATTCCAAAACAACATCATTGACGGCTGGAGAAAGCATTTTATTTTGGAAGAAGATATGTTGGAAGTTGATTGTACTATGTTAACTCCATATGAGGTTTTGAAGACCTCAGGTCATGTTGACAAATTTTCTGATTGGATGTGTAGAGATTTGAAGACTGGTGAGATTTTCAG
+>chrII_509290_509702_4:0:0_3:0:0_4
+CCAAACTATGGGAAAAGTTTAACTCTTTCTCCAAGACAACCATCTATCCGCTTTTATCTTCCTTGTATCTAGCGCCATCATGGAAAGAATATGTCCCGCTAAAATATCCTTCTAATAACTTCAAGGAATGATACAAAATTTGGGTGAAAAGGTTTACATTGGATTTATTGAAAACAGGTACAACAGAAAATCATCCATTA
+>chrII_551662_552193_3:0:0_4:0:0_2
+CTCCCCCATGAAAAAAGTTTCTCAAAAGTTTAAGTCAATAAACTCCACGGATACTGATATGCAAGAAGCGTTAAGAGATCAATTCTCAGTAAAACATAAAAAAACCAAAAATAATTCACCCAAAGGAAAAAACTCTCGAAAATCCTCTATTCCGAGGTTTGATAAGACTTCTTTGAAGCTAACGACACACAAAAAGCTAG
+>chrII_561725_562138_6:0:0_5:0:0_9
+TGTAGGCGAAGTTTACCTTAGAAATGCTGGTACTTTCAACAAAGGGTCTAGCCTTCTTTCACACCCATCATCCAAGTCCATGTAAATACCACCATAATGCGAAAGGATGAAATACCGTATTGCCTCCGCCCTCTCAATTGGATCTTCATAACTCCTAAAGGTGTCAAGAAACCACGGGTATTCCTGTTTAATGAAAGTAT
+>chrII_600174_600690_0:2:0_1:0:0_3
+GAAATGACTCCATTCCCTGAATTTTTTGTGAAACCAATATCTGAGACTCTTCCTTCATCTTATCAACGTATTGTTCAGTCAATTAAGTAAGAAGTATATTTGAGCGCAGCCTTAATCATATATAGCACCAGTTATATGTTTGGCCCTCTCTTGAGTTGAAAAACACATAATACATAGTACTGTACTTTTCTCTTTTTCAT
+>chrII_688026_688533_5:0:0_2:0:0_8
+TACAAACAGCAATATTTGAGGCCTCCAGTATTTAATATTGTCTTGACGTAGGCGAAGCAAATACTTTCTCACTTGATGATATATTAAACTTTGAGACACATCACCCCAAGCCTTCGGTGGTGAAAAATAATGAAAGAATAAAAATAGCAAAATCATAGCCAAAAACAAGACAGACGCTGAGATGCCATCAACTATTAACA
+>chrII_798295_798806_6:1:0_5:1:0_a
+AATGTTGTTCTTGATAGTACCCGAAACTCTTGCGGCTGCCAAGACAGCACCCAAGAACTCACAGAGACCCGGCAAAACCATGGCTTGCCAGTATTTTAGAGATCTAGAAGAGATCGACGACGCGAATGAGTTCGCCACGTCGATTGCCCCGATGTTAAAGGCCTCCAAAAAAGCAAATGACATGGCAATGGCAAAAATAT
+>chrIV_125433_125964_0:0:0_4:0:0_10
+ATTAATATTCTGTCCTGTGTCACAAAATATTGTAATAATTTGGTGCGGTGTATGGGTTCAAGTTCCCAAAAAAACAACTAATTTGCGACACTTCGTAGTTCTGTGCTTTTATATGGAATATACTTGTGGACTCTATTCCTGGATGTAGATTTGCTTACAGATAGCCAAGAAATATTAGAAAAATATGCAGTGTAACACAA
+>chrIV_144073_144624_1:0:0_7:0:0_b
+CGATAACGGAGAATATGTAAGGCACCAGATATAACCCTTCTACTTATGTTGATAATAACAGCATTTCCAACTCTTCCAATTACAGACACTACACTTCTTATCAACCATCTAGGAGTGGTACCTTTGGGAAAAGAAGATAACTTTAAATAGGAAGCCCTTTAACAAGCTGTTCTTGGTTACATTATATTTTCTTAATGAAA
+>chrIV_173050_173669_2:0:0_1:0:0_17
+CTCGATGATCATTAAGCCCAATGACCAAACGTCCCCTTTGATAGAATAAACGTTTCCTTGTATCCTCTCTGGTGACATATAAGTGGACGTTCCAACAAATGTATCAGCGATAGACTTTATTAGTTTTTTGGAAACTCCAAAATCACATAACTTAATCTGCCCCTTACTATTAATCAGAACATTGGAAGGCTTGATATCAC
+>chrIV_182621_183117_1:0:0_3:0:0_16
+ATCAGCCCCATAATATTCTCCTTTTGTGGACCCCCAGGCATTCTCGTTGTCTAACATACCATTCTCTTCATCTTCCTCAGGAAGCTGGTCAGTTTCTAAGTTTCTACCAAATATTTTCTTATAGGCTGCAGCACCATCTAGTTCCTCTTCCTCTTCTTCTTCCTCATCTTCTCTTTCATCTATTGAGTCATCATCTTCAT
+>chrIV_186784_187257_2:0:0_5:0:0_12
+TGTTTGTGAAATTTGTTTCCTTTATTTGTGGATCATTTGTGGCCATTTTAGCTTTTCTCACTGTATTCGATCCAGAAAACTTTTTAAACTTTGAAATCACCTCGGACAGATCTGTCATTTTCTACATTACTATTCTGGGTGCTATATGGTCTGAAAGTAGAAATACAATAACCCAGGAGTACCATGTTTTCGACCCCGAA
+>chrIV_244937_245365_5:0:0_6:0:0_14
+AGAACAGAAGACGATAGAGATATTTCTGGTAAAGATGTAAACTAAGTTATAAATACGATATGCGTAATTGTGTAAATAACAATAACTATAATTAAATTGAATAATTAAAAGTCTACGTTATTCGTTAAATCAATTGTTTATCTAGTTACGAATGTCTAAAGTTTTTGTAGGACACTTGCACAAATCACTTCCATTATTAT
+>chrIV_249898_250451_2:0:0_3:0:0_8
+TGCTCAAATTCCCTAGGCGGTATATGTGTGTATATCATTTCTAATGGTGCCATCAAAAAGTAGCTATTTTCTGCTTTCTTGATCTTTCTGTTATTTACAAATTCATGAATTGGGTTGGTTACATTTCCAAAAATAAGGTCAATAAATCTCCATTCTTTGTTAACCAGTATTCTCAACCAGCAGTGGTTATACTTCAACTC
+>chrIV_559435_559935_6:1:0_2:0:0_18
+GTCTTCTTTAACTCGGTCTTCTCAAAATTTTTTGCCTTTTCTTGCATCCATTTTTTGAAGCTCTTGGTAGAATCGTTGCATGTGAGATGTATGAATATTAGGTTTTTCGTTTGCTGATTAACTGATGACGAATTCAGTAAGTTGTCGGCATGATATTGAAATAGAGCACGAATTTGCAGTGCATATTTTTTGTTTGCTTT
+>chrIV_563824_564394_8:0:0_2:0:0_5
+AGACCACCAATTTTTTGTAAACCAGTGTTGTTAGCAACGACACGAGCACCACCTATGGTTGACAAATTAGAGAACGACAAGTTCTTCAAGTAGTCATTGGAAACGATACTGAAGGTTTGGCCAATGGTGTTTAGCTTATTGAAATTCAAACTTGAGATGGAGTTGTTGATGAAACCCAATGAAGAGTTAATCTTTTGCAA
+>chrIV_580788_581307_6:1:0_1:0:0_a
+TTCCCAGCTTTTTCGATTGTTGTCTGCCCTTGTTAATTGGTGACCGAACAAACCATATTTGATTCCTTCCTTCTTTAGTATATGACAGCCCAGCAGAAGGTGGGCCATTTTTCAATTTTTGCTGAATATGAAATAGTTTCAGGCACGCATGTTCGTTCAATGCTAATGGTAATAGGAGTTTGTGCTGATACGTTTTTGGT
+>chrIV_643692_644219_1:0:0_2:0:0_3
+CTGGACCTTCTTTGACGGTGTGCCAGAAGGTACCTGTTTTGAGAAAAAAGATAACAAACTCGATTGCTTCATTTTCTTTTGAGAAGATGTGGAGCCATTTTCGAAGTGTGCAGTCTTAGAAGTTTTAGGGGTAGCTGGGGCCATTTTGGAGTTCAAATTGGCTTTGTCAAAATTCACTAGTTGCTCCAATTAAAAAATCT
+>chrIV_841170_841687_3:0:0_4:0:0_f
+TGTCCTCTTGTTGGTAGCGAATTATATTCCGTGGAGGTCAAAAAAACAGAAACCCTAATGGAAAATTTTAGAAGAGCAATTGTGTTAAGAATCAAAGAAACTAAGGAATTTTAAGAGGGTGAAGTGACAGAACTAACCCCTGAAGACGCAGAGAATCCGTTGGGCGGATATGGTAAAACTATCTCACATGAAATTGTCGG
+>chrIV_847233_847818_5:0:0_6:0:0_d
+AGAGATCAAAGAAATTTTGGTAGGAATCAGAGAAACAACAAGAGTAACATTTATAGAAACTCCCGTTTCAATTCTCGCCCAAGGACAAGGTCTAGAGAAGACTATGATGAAGTGCACTTTGATAAGACCACTTTTTCCAAACTAATTCACGTGCCAAAAGAAGATAATAGTAAAGAAGTAACGCTGGACACTTTACTGGA
+>chrIV_870726_871233_6:0:0_1:0:0_e
+AATTCTCAGGCCACGTCAGGCTTGCATAAGCCACGCTAGCTAATAATTCAGCGAGACCCTATTCCAAACCTAATTGTTCGGAACGATGCCATATCTCTTCCGCAGTGTGTGTCTAAGCGGCTTTAAGAGGATACGAAATGTCAAAACACGAGAAAATTCGATTATATCAGTACGAACTTTTCTTTGCGCTTACTGCCTGA
+>chrIV_876300_876846_11:0:0_4:0:0_0
+ATGGTTTGAAACAAAGTGGTGCAAACTTGTATGAAACCATTAAATCATATTTCATAAATTGTTGCGACATGCAAGACGTTCGCGTATGTTCATGCGTATTTAAGAATCGTCAAGTAACAATTTGCTAATTCGTTGACGACCTGATTTTATTTAGCAAAGACTTCAATGCACATAAGAAAATGATAACAACACTCAAGAAA
+>chrIV_882753_883176_3:0:0_5:0:0_9
+AATTCTTTCCAAAAGTATTGAAAAAATGCAATCTGATACGCAAGAGTCAAACGACATTGTGACCCTGGCAAATTTGCAATCTAATGGCAGTACACCTGCAGATGCATTTGAAACAAACGTCACAAACATTATCGACAGACTGAACAATAATGGCATTCATATCAATAAGAAGGTCGCATGCCAATTAATTATGAGAGGTC
+>chrIV_946167_946637_1:0:0_2:0:0_4
+ATATTATTAGCTATTATTATATCATGAGCAATTCTCGCGCGCGGCATTTGAGATAGCAAACTTAATCCGTCACACAGATAATACAACAAATTATGACACATAATACTCCCGGTACTCAATAATATCTCATTGTTCGGTCACGAATGTGTCATTGACTATCCAATAGAGAATCAAATACAACGACTACTGGGAACTTATCT
+>chrIV_1060041_1060548_1:0:0_3:0:0_1
+CAGCGTTACCTGATGCAGAAGAAACTTTGGTATACCACTTGTTTAATACGGCAGTCCTGAACTCTTTTAGTTCTGAGTCTAAGCTATTAGTTTCTTGGTAAAGCTCTTTGAGAGATCTTTTTTTGGACAATTTATGCTTCGCCACCTCTTCATTTTTAGTGATATGATCGCCAAGTTGGAATTTTATTCTGAAATTTATC
+>chrIV_1177126_1177640_7:1:0_3:0:0_15
+AGTGATGTTCTTCTCTTTACTTCTAACTACTGTACGAGATTTACCAATAGGCTGATAAAAGGAACTGAGATGGATAGGCAGTTAGCCACTTTCCAAATATTTTTGCATGATGAGACAAACATAAAATTTATAATGGAAAAAGTTCTGAAGTTGCATACATTTGACAGCTTAATCGGTCTAGTAAATGGCCTTGTTAAGGC
+>chrIV_1195691_1196148_1:0:0_3:0:0_6
+GAAAATGAAGAAGATCAAAATGGAGAAGAAGAGATCGTAAATATTGACTTCGATTTTTTCGGTGGTAACCCAGAAGTTGATTTTCATGCTTTAAAGAATTTACTGCGTGAGTTATTTGGTCCTCAAGAAAGTACCAGGATTCAACTAAGCAGCTTGGCAGATTTGAACCTAGGTTCCCCAACCACCACAATTAAAACAGA
+>chrIV_1244113_1244597_3:0:0_3:0:0_7
+AGTTTTGCTAGAAAAGTTGGAAATTGTCTTGAAGGGTGACGAAAAGGACTTGGAAGGTAAGGCCATGTTGAAGGTTGTTATGAGAAAGTTCTTGCCAGCTGCCGATGCCTTATTGGAAATGATTGTCTTGCACTTGCCATCTCCAGACACTGCTCAAGCCTACAGATCTGAACAATTATACGAAGGTCCAGCTGACGATG
+>chrIV_1284104_1284638_3:0:0_6:0:0_c
+CTATCCAGGCCGACAATTTATTCAAAGTGGTTTAAACGAAGAACAGACTATAGAAATGAGACAAAACTTTTGGTGTCGCGAACATATCATTAGAAAGCTTAAAAGTAACTGGAAATTAACCACAGACCAAACTGTAACAGTTTCGGTGGATTTCAATAAGTTCATAGAAAAGTTTGATCACAAGATGGTCTACACGATAT
+>chrIV_1330536_1331017_4:0:0_2:0:0_13
+ACGAGAATCTCCTCTTCAACATACGGGCAGGATAATATAATTGACTATACTGATAATGAAGCCCGTTTTTTGTTATCTTGTGAGATAAGTCAGTGGACACTTGATCTAGCAGTAGACCAGTTTCCCCTCCCCCAAATAATACTAGAAAGTTGAGAAACTACAGAAATCTTGTAATTTAACCATTTTTTTGTCCCAAGCCG
+>chrIV_1429030_1429503_8:1:0_4:0:0_11
+TCCAACCTGCAGAAAACCACTCTACGAGGGTCACCGTGTTAGAGTTTCATTGGGCCGATGCTCGGCGGCTAATGCTTCTATTATCATGTTCCACGGACTGGACGGTGCGGCTGTGGGACGCGCGAGCAGGGAAAGCTATCATAGGGGCGCCATAGTTGTTAGGGGGGCCCGTACTACGTGCACGCTGGCTCGAAAAAAAC
+>chrIV_1492123_1492615_1:0:0_5:0:0_2
+AGTTTTTCGTTCAAGTTTGGTTGAAATCGGCTTGAGGTATATGAACGTGGTTGGGATATGGAGAATGGGAGATCAACGAAGCGAAAATACCTGCGACAGTTTTTTTAAAAAAGAAGCTACGGAACATGACTCAAAGAGACACATTATTCTTGTTTTTAAGAATAGGCGCTGGTCGGCGCACCTGTATGTACTATTATTTT
+>chrIX_80744_81245_3:0:0_7:0:0_2
+AAGGAGGGGTGAAAAGATCATCGTTATTTGCGATAATGTTTACGGCTTACAAGAATATGCTTTGAAAATGGGAAAACCATATATTTATGGTTCCACACCACAACAAGAGCGTATGAACATTCTGCAAAATTTCCAGTACAAAGACCAAATCAATACCATATTTCTATCAAAAGTTGGTGATACTTCCATCGATTTACCAG
+>chrIX_112304_112798_3:0:0_6:0:0_3
+CATTGATTAACGGAAGTTTGTTGTTGAAAGATGAGGAAACGTGCCTTTTCATGCCAGGAAGATTATTGGTATTGTTATTATGTTTGTACTTTGAGGTTGTATTACTGGAAGATCTTGATAGCCGCCTATTCATTAAAAAATGAGCCTGCGAGGGATGTGCCTTTTCAAACTCATAGTCTTTTAATAGTTTTTCCATTTCT
+>chrIX_267301_267746_2:0:0_8:0:0_1
+AGAAGAATCTTCGCCGCTACAAGGAGAAGCTGGATGCCTAAGAAGAGCAATCCAGCTCCTACCGGAGCTGGATGCCCTCTGTGTCGGTATAGCAGACTGCATTTCAGCAGAGAGAGCCGGGCAAAAGTCGCAGCGACGGAGACTATCGCTCCGTACCTGCTTTCAAGACGGACTATTCTGCTTTGCAGAGGGAGTTGGTT
+>chrIX_317800_318294_1:0:0_6:0:0_0
+GTGGTGGTAACCATCAACATATTGGTAAGGCTTCTACTATCTCTAGAGGTGCCGTTTCTGGTCAAAAGGCTGGTTTGATTGCTGCCAGAAGAACCGGTTTCCTACGTGGTTCTCAAAAGACCCAAGATTAATCTTTTTAATTTTGGTTTCTTCCTTCTGTCATATTATTTTATCAATTTTCTTAAATATTATATAATTTA
+>chrIX_363622_364118_4:0:0_3:0:0_4
+ACCTGCAGACGGTAAGACGAATGGCACCACTAACGCTGTTGATGCAGCATTGGGCAATACTAACGAAAAAGATGACAAAAATAAGGCGAGGACAACTTGTGGTCATTTAACTGTACCCGATGGAAACAAGAAAAATGAGCAGGTAGGAGCAGAAGCTAAGAAGAAGAAGACAAAATTAGAGCAGATTGAGGAAGAACAAG
+>chrIX_372554_372983_9:0:0_2:0:0_5
+GCATTCCGCTGGTAAGTCATTCGAAGTGTCACTTCCAGGGGTGTTGGGCCTTGACTTCGATTTTGCTCAAATTTCAATGAACTGATGGCCAGGCTCGTGAAACCATTCAAGAACCTGGTAGTCAGTGTTATAGGTATAATGACCTGATGATGAACGAATTGACAACCGGCTAGGTGTAAAATGGTGCCGTGGTATAAAAA
+>chrIX_405615_406160_6:0:0_3:0:0_6
+TAGTTTGAGATGACACAACTTTTAATGATCTACAATATATCCATCTGGGTCTCCACGGCTGCAATTTTGAAATTTTCTTAGCGCTAAAAAAAAGAAATCTAACTGAAAAAAAAAATTATACCTCAGCTCATCGAATGCATCTAATACAGGTATAACGCAGAGAAAGCAGTACAAGCAGCAAGAAATTACCGGGACGATGG
+>chrI_25874_26397_2:0:0_7:1:0_2
+ACCAATGGTTTGCGAACTGATGATAGCATCATTGTCATCAGAACACCAACAACAGCCCCTACTGCCATGACTACAACTCAGCCATGGAACGACACTTTTACCTCTACATCCACTGAAATGACCACCGTCACCGGTTCGAACGGTTTGCCAACTGATGAAACCATCATTGACATCAGAACACCAACAACAGCCACTACAGC
+>chrI_93599_94144_3:1:0_9:0:0_1
+CATCCAATGGTCCTGGATCTTAAGTCCCATAGCTCTTTAACGATCTTGTCCAAATTTGCAATGTTTTTAACAAGGTCATTTTCATCTTTCAGAACCTCATCTTTCAAACTGTGGTTTAGTAAAGCTTCTGTCAGCTGTAACTGGAATCCGATATGAGGCTGATAGTAGTCTAATTCATGTGAATTTAGCGAAAGATTGGC
+>chrI_139586_140147_6:0:0_3:0:0_3
+TGAAAACCAACCAGGTGTGTTGATTCAAGTCTTTGAAGGTGAAAGATCCAAGACTAAGGACAACAACTTGTTGGGTAAGTTCGAATTGAGTGGTATTCCACCAGCTCCAAGAGGTGTCCCACAAATTGAAGTCACTTTCGATGTCGACTCTAACGGTATTTTGAATGTTTCCGCCGTCGAAAAGGGTACTGGTAAGTCTA
+>chrI_176449_177020_5:0:1_5:0:0_0
+TAGGCCGTTATTTCCGTAAAGGATGGTATAATAATAAGAAATTTATCATATTAATAATACCTATATCCAAAAATTTATATTTATATACATGCGCCTAACTATTCATACTATTAATTTCATATTATTAAGCTTTTTTTTTTTCATTTATCATTTTTTTTCGTAACCCTCTCCTACCTGTACAGGTTTCATTCGTAAAGCAG
+>chrM_7124_7740_3:0:0_7:0:0_0
+TTAATTTTCTTATTCTTAATAATATATTTTAATAGTCCTGACTAATATTTGTGCCAGCAGTCGCGGTAACACAAAGAGGGCGAGCGTTAATCCTAATGGTTTAAAGGATCCGTAGAATGAATTATATATTATAATTTAGAGTTAATAAAATATAATTAAAGAATTATAATAGTAAAGATGAAATAATAATAATAATTATA
+>chrVIII_22151_22729_4:0:0_5:0:0_4
+AGTCATGAATTTGCATGGTACAGACGTGTACTTAACTATGAGAGATACGCTGAACAAACTAGTAAAGGAGTTGAGGATGCTGTTCCAAGCTTTATCTATTGAACACTCTTCTCAAGATAAGCAGTTCTTTTCTTTATTCCAGGAGAATAAAGACTCTGCCGTAGTGCCGTTGTAACAGTTCTGCGCACACATCAATGGCT
+>chrVIII_133554_134047_5:0:0_5:0:0_5
+GGCAGGAGAAATAATCCTAATAACCTTATGTCGAAATACAGATTCTGAGAATTAGGTTAATTTTGAGATAATTGTTGGGATTCCATTTTTGATAAAGGCTATTATATTAGGTATACACAATATACAATAAGTTCTCCTCGAGGATTTAGGAATCCTCAAAATGGAATCTATATTTCTACAACCTAATATTACGATTATTC
+>chrVIII_272363_272823_5:0:0_6:0:0_2
+AATGCTAGAAATGAGGGAAGTGTGGACTTGATATGGCCTGTTGTGGACGCCTGAGAGTTCTTTCACGTGCTGTGTTCGGCCCGCCTATATAGGGACAAATTGTTAAAAAGATAAATAAATATAAACTGCCTCGGAAGGGGTTGGGAACGCCCGGCAGAAGCGATGAGGGTAACGGGACGATAATTAGAAGTGAATGCTGA
+>chrVIII_311844_312317_4:0:0_2:2:0_8
+TATGTTTATGTCTAAATTACGCGCATATGAAGAGGCAAATCAAGCCTTTGCAACAGCTGATCAGATAGACTTGAACTTGGCTAAAGCATGGGCCCAATGGGGTTTCTTCAATGACCGTCGTTTGTCAGAAGAGCCAAAGAACATTAGTTTTGCTAGTAATGGAATAAGCTGTTATTTACAAGCCGCCGGCCTGTATAAGA
+>chrVIII_342849_343228_3:0:0_3:0:0_1
+TATCGTAGTTTGAACTGGTGTTCACACTAGAAACTTCTAAGTGAGAGTGAAAAATCCCAAAAAATGACGCCAGAGAAGTGTTAGACGGCAAAACCTGCGAGCCTCTGCCTTCATCCTTCGATAGGTTTTCATTTAGTACTTTCATTGCTTGCTTATTTAAATTTCTTTCCAGCATAGGATCAATGGAGGCTCCATCAAAG
+>chrVIII_385961_386445_6:1:0_2:0:0_7
+GGTGGCGGCATCAAGGGATTGAGACGGGTTAGTTAAGTAGACCGTACTATAGTAGTCATCATCATCATAAAAAACGTAACAAGTGCCATCCGAGCTGGAGACGGATATCGATTGCGTAGAAGACGATTCTAATGGCATGGATGTCGTTGCTCTAGACGTTGTATCTACGCTAGAAGAGGGTACCAGTGTAGAGGTAGTTC
+>chrVIII_455213_455717_8:0:0_5:0:0_3
+CTACAGGCGGCTATTATTGTCGACGTATTCTGTAAAAGCTTACCGCTAACTACAACTTTCGACTCTAATGCCTGCGTAACGCAGAACTTCCCAAAGGGAACGGACCTGGAATACTATGCAGAACTACAGGAACTACTGAATAGCATTCCACGTAGGGTCGGTCATATCGAAGCAGTTGTATGGGATGATAGACTGATCGA
+>chrVIII_456483_456967_3:0:0_7:0:0_6
+AATTTTAGAGAAAATGTTTTTTTCAGAAGTCCAGTATAAAAATACTTCCTATGAGCCCTCTCGAAGATATTAAAGACAGGTACATTATGCAGCGGTAGATCGTGCGTGGAACCGAGCCTATTATACTCTCTATATACGAGAAATTAGCCTGAAATTCTTGAAGGAGACCAAGAAAAACCATCTGTCCATCTTTTTATGCC
+>chrVIII_495976_496487_3:0:0_4:1:0_0
+GCGCTTTACAATTTTCATATCATGACAGTCAAAACAACGAATTTGAGGTCATGGGAGTAGTTAATAATCAGCTCGTCGGAAAATTCTTATTTAGCCAATATTTATGTGGCGAAAAATCTCCTTCTCCACCAGCCAAAAAAACAGCTATCGACAAATTGAACACACTCCTCTAAACTTTTAGAATTAAGTCTTGTTCATAC
+>chrVII_48887_49401_7:0:0_6:0:0_6
+AATAGCACGGAAGAAAATATCATAAACGGCAAATTATTAAGGTAATATAGCATCCTGGAAGACATTGTTAGTTTCTGGGAGGGTCTGTGCCCACTCATGGGTATCTTGATGTGGCTCATTAGATGGACCATATAGCCTTATGCCTCTCAGATGTGTATCTTTACCGTTTTCATGGTTGACTGGAAACAAAAGCGTGATGA
+>chrVII_79245_79829_5:0:0_0:0:0_10
+TCTTAAAGTCTTGCAATTGAGTAATCAATTTATTTCACAAATCTGTCCGTGTCTCTTGCGGGCATTTATACAATTCTAAGTTTTGTAGGATTTCAATCGTAGGCTGCACCGTTTGATAAATATGCAACGTGGTATCATTGGTTAAACCTTTTGAATAGAATACCGCTGTATCAATATATTGTTTCAATGCATCATCATCA
+>chrVII_85765_86253_2:0:0_4:0:0_1
+AAACAGGACTACGTCACCGACGGAAGCAAACGAAGTATCTTCACGATCTCATGCAGTGCTTCAAATACACATCATGCAGACAAATAAGCTTGTAGACTTGACCTCGCAACATACAATTGCTACACTTTCAATAATCGATCTAGCTGGGAGCGAAAGAGCCGCCGCAACAAGAAACCGTGGTATAAGATTACACGAAGGTG
+>chrVII_131596_132048_5:0:0_4:0:0_8
+TAACGAATTCTCTTTCTATGCTGGTTCTGCTTATCTTGGGATTTCTTGCCTTCTTCTTGCTTGTCAAGAATAGTTTCCACACCGAACGTTGCATAAGAATGGGCGACCAACAAATTTGGAATGTACTCATCAAATAAATTAGAATTATGCTACACAAAAATCAAGAAAGAATTAATCCAATCTAACAAATTAAGGTAATC
+>chrVII_166337_166856_4:0:0_6:0:0_c
+GCGAGGTTCTAAACATCTGGCCAACCCCTAAATTTTTAATAATTCCGAAGCTGGATATATTGCATCTGGCAATCTGAAAAGCAATAGAAAGAAGCGGCCTAGTACTGCATATTGAGTGATAAAATATACATATTAAGGTTGGGGAAATGGTACGCGCTTACAAGTAGCTAGAAAGATCTTAATGTTCTGAAGTACGGTTT
+>chrVII_258548_259029_4:0:0_4:0:0_b
+CAAACGTATTCAGAAACTGATAGGCTTGTAATAGCTTTCCAAAAGACTCAACAGGTCTGGAAAGTTTAGTAGAACCTAATGAAATACATTCTAATTTTTCATTATAATACGTTAAGTTTGTAAAGATGTTCGGTGGATGTTGATATGGCAAAGCTAGGTCATCCATTATGCTCGTTATTGTTACAGCCTGAGGCTCCGCA
+>chrVII_461541_461988_0:0:0_4:0:0_9
+GAGAAAAAGCTCGAACTATTTGTAGCACTTCACTGTATTGCTAACAGTTCTTAAAAACTTCAGAACATATAGATATTGCTAAACACAGATTTGAATACCATAGTAACTAGTCTCTTATTCTTAGTTTTTGATGAGCTCCATTCACGAGGTTGTGGCTCTTATTGAAGAGCTGTACTCTCCTCATCCGAAACATGATGTTA
+>chrVII_463361_463814_7:1:0_2:0:0_e
+CATGGATTAAACATATCGTTGATGCCAACAAATTCTTGAACCAAAATGTCATAACCGTCTTCCAAACTGGTTTCCAAACTAGTGCGAGTACAAAAGTCAGTCAAATTATGAAACTTGACTTCGTAAGAACAAGTACAACTTTAATCGGCACTTTGGCAGGTTATATTAAACAGGAACCTTTTGAATTAAACCCATACGTG
+>chrVII_530414_530972_2:0:0_5:0:0_d
+AGGGTGATTTTAAGAAGAAAAGTTATGGCAAAGCTGCTTTCGCTATGATTTAATAGTTCGTGATATTAAAGCCGTTGATTGGTTTCGTGTAATAGTTCTCGTCGCTGCTAGCTTCGCTGTCCTCATAAACACGATGAATGTTTTCATCGTGCATTACTTCATCTGCGTGGTTGTAATCTTGACTATTACTATTCGACATT
+>chrVII_542196_542637_2:0:0_4:0:0_3
+AAGGAAGCCCAATGTCTCGCAAATTTGATTTAAAACCGATTACTGATCTTTCCGTCCTAGTTGGGACTGGCATATCATTATCCTACCTGGTCAGTCGGCTACTCAACGATGTTGAATCAGGACCGTTATCAGGTAAATCAAGGGAATCAAAGGCCAAACAGTCCTTGCAATGGGAAAAGCTGGTGAAAAGATCACCGGCA
+>chrVII_681272_681783_6:0:0_2:0:0_11
+TAACCCGGCTGTATCAATAACGAGTAATGGGCTGATGCTCCAAGAATCAACAGCAAATAAAAATACTACTCCAACAACTAATTTGCGCCACCAAAGAAATATTTCACAAACAAGTTCCCTCCCTGGATTTTCATACACCTCCCTATCCCTACCAGTGAATTCTCCAGGTAGCTCTAATTCAGAATCCAGCTCAGGCGGTT
+>chrVII_892310_892899_5:0:0_6:0:0_5
+AGTGCCTTACAGAATTCTTGGCATGAGAACAACAAAATAGCTCCCCGGAAAGAAACACTAATGTGTCACCAAACAAACAAACGACGTTATATAATTGTTGTGATATTTGCATCTTCATCTTATGATGATGAGAATATAAATAATTTTTCATCGTATTAAGTGTATATATGAATAAGCTATTAACCCTACCCATTAATTTG
+>chrVII_902032_902576_3:0:0_3:0:0_4
+TGAATTTGAGAGTTTCAAAATGTGTGAGACAGAGATGCAACCCATTAAATAAGCGTATAGAGTATAAAGATCAGTATAATTTATAGCCTGGGTCGGTCCTTTAAGCGATTTCTTCTTATTAACCTTGTCAGCCGTTTCCACGTGACGGGAAAAGTGTCCGATATTGAAATAGATGAAAAATTTTTTTGTTTTAATATTAG
+>chrVII_922150_922627_3:0:0_1:0:0_a
+TGCGTGGATTAGTTTATCATAAGACTTTCAATGAACGTACCAAAGGCGAGACTCCTAAAAGTAGCAGAGTTATCTGCGAAGATATTTGATCAAAATTTCAACCCATCAGGTATAAGAACGGGTTCTAAGATTCTAAATGAGCGATTAAAGGGCCGTTCTGTGGCAAGCTACTACGGCAATCCGGATATCCTGCAGTTCAG
+>chrVII_971124_971582_6:0:1_1:1:0_f
+GACAGGGTCTTGTAGAAGATGGAACACCACCTTGTTGCACATGGCCTGGGATAGCAGTTCTAACACCCAACTTACCCTTGCATGCTTCCGATATGATGTCAGCCAACAATTGAGTGCTATATACGCTAGAAGCTTGTTCGTTTCTAACCAATAGCTTACCGTTTCTGTTTTCACCTTTGTCGTGACGAAAGTTCTCTTTT
+>chrVII_1003618_1004194_4:0:0_3:0:0_7
+GTGACATAGAGTCCGTCATAACTTTTCATCCTGTCATGCATCCAAGTTGCCCCAGCGTTATTCTCAAGAAAATGAATAGATCTAGGCGTAACACTGACAATCCTGTTCGTAAAATAATCTGGGGGTGAATTATAAAAGTCCGATAATTTATCTTTTAAGTCCACCATATGGACTAAAGTTGTCTTTAGATCTTTTAATTG
+>chrVII_1051445_1051916_1:0:0_3:0:0_2
+ACCAAGAATTCGCTGGAAGACATCCAACCCTGCGCATTCACCATTATCAAACTCGTCTTTTTTGTCTTTACGTTTTAATTTAGCACCGAGCCCAACGTTGTCGTCCTTAATTGACACTTTGATATGCGAAGTGTTCGAATTCATGGGGGATAACCCGAGACCCATACCGGGTTTCCATCCAAACTTTTCTAGAAATTGGT
+>chrVII_1066297_1066809_8:0:0_8:1:0_0
+GACGTTGAATTGAAGAATAAACTGAGCCACACAATCCCATCTTCTGCACACTTAGTTCCTTATTTAGAGACTTTTATGATAAAAATTTCTTCCGTTCACTGTTAAACAAGCTTGTGAACAATGCAGACTGTGCAGGAAAATGACCTATGTTTGAAGGATGTTGCCACATAATTGAGGGAAGTTAGGAGAGCATTCCCTAC
+>chrVI_18396_18897_3:0:0_4:0:0_0
+GCACTCATCCAAGGATGGCGCTATTTCGTACCTTTTGATGCGGGCAATTTTGTTGATGCTTATAACCTTCTGCCTGTTGGAATTTTATTGTCTATTGGCATATGTGTTTTTAAGAGCAATCATTTTAGAACTGTTGATTTGCGGTCAATCAACCTAGACGAAGGACGAAGAAAAGACATGGAGGCTGATCTTTCTGATCA
+>chrVI_38233_38753_3:0:0_4:0:0_2
+ACGAACGATAGTTTATATTACTACTTCACCAATTGTTTATTTCTTATTGGAGTGTTGCCTACATTATGTTTTACTTCTTTCAATTATTCATAGCTACTTCGTTGCTGAAGTTAGCCAGGTTGTCCGGTTTAGCGGCGACCGGATCCGTCGCCACCACTGGATTAGCATTTGTGTTCTTTACTTCATTGTCCAGCTTAACA
+>chrVI_118934_119464_5:0:0_3:0:0_1
+GACTTGAAATTACTTAGTTCTAAGCCAACTAAACGTCCCATTGCGTCTCCTTGTGCCTGCTTTTTATCAATAGCCTCTGGATGCTTGCTTTAAGTGATTTTATGAGATGTGATATTAGCGTCTTCGGTCTTATAGAATCCAATACTCTATTCACTTTACGCGTTATTGATACTTTATTTTTTTTTCGCGTACGTGTTTAT
+>chrVI_184780_185293_1:1:0_8:0:0_3
+TTCGAACATTAAAGCTAATGCTAACACTAGTACCAGCGTGAATAAGAAAAATTTGCCGCCAACAACTAGTGGGAGGATACCCTCTAGCACCATCAGGAGATATCCGAGTCGCTATAAGCCTTCTCACTCGCTGCAGCTTCCCATTAAGAACGACTCCAACTTTAAACGATCTAGCATATATGCCTCCAAATCCACTGTTA
+>chrV_124419_124957_4:0:0_4:0:0_5
+TAAAAGAAATGGTTGATGTGCCTATCGGCCTTATGGGCACACATGGATACAACTTTAACAACTGTAGTGATATGGCATGTATATTCATTGGAATGGGTCCGATGTTCAACAATGAAGTCGTACCTCCATTTGAAAACATCGAAGTATACAATATGCTGCTCAAGGCAAGTGCGCTTTTGGGAGAAGAAAAGACAAAGAAG
+>chrV_151218_151704_3:0:0_8:0:0_2
+TCATGCGCTTGTGATTATCGTATAGTGTATATATATAATATATATAGATAGCGATAAATGGCAAGATCCTCTATGATAAAAGTCAACATAATGAAAACAGATGGCGCTTGTCTACTGTTTGCAAGGCTTGAAATCACAGGTTTTTATTATATCGTGGATTTTTGCCATTGCCTAACTCAAAAATAATGATCGATTTTTTG
+>chrV_234738_235208_3:0:0_5:0:0_3
+TTCTCTCAAAGTTATCACTTTGGGATTATAGGATACTTGTAAAACCTCCGCAAAATCTGTGTCACCACCACAAACTCTCTAATAAGAGACACTATAGGGGCTATCCTTTTTAGACACTTCTCCATTAGCGTAACCTACTTTACAATCCACTATCCGTTCATTCAAATACTTCCTATACATATGTTCTGTACCCCAAAAAC
+>chrV_278567_279041_6:0:0_2:0:0_6
+ATGTCCAGTGGCTTGCTTTTGGATCTTCCTGGTAAGCGTGCTGAGGCTACTGCCAGACACTCTGCTTTATCGCCTAGTAAAGTTTATGTAGCATGTGCATTGACGTAGTCAAGATCATTTGGTTCTAATCTAGCCATTTTTAGAGCCATCTCTATTTCTCTTTTGGCACCATTTCCATCAGCAGGAGGGGAGGTAATATG
+>chrV_436297_436806_7:0:0_5:0:0_7
+TATTGGTGAAGATTGAACATTCATTTTCTTATGCTTATATAATAGAGGAATGAACACACGCATATAGGATCATTATATAGTTATGGCTCGTATTATCATGGCTCTGGTCATTTCATACATTTGATGTCGTCACGACTCATATTATTTGCTCATATAAATAACTTCCTCAAATATATAAGTTCCTCATCAAGTTCAATTAA
+>chrV_479347_479873_3:0:0_3:0:0_4
+ATGGATGTGTTTCATATATCAGATGAGTTCGTATTTAAATCGGTATACGATAATGATGGTAAATCCCGTCCTGCTAGTATGGTCATATAACCACCAAAGAGATTCTCACAACACTCTTCCATGCTTATTAATAATCCAGCTACTCCAAACCAAAAGATGAGAGATTCCTTGGATACCACTGGAAGACTAAGTAAGACATT
+>chrV_482784_483296_3:1:0_7:0:0_0
+TCCCTTATCTATTTAAACATATTTAACAATACCACTATTTATTCTGTATAGTAAGTAAATCTTTAATGCAAGCAAAAATCTTCCCTCCGCGAATCCTGAAACATATTCCCCTCGGTGAAACACGCTCTTGCAAATGACCTGAGAACACAAGATATCAGACGGCTCTTGTTGCACAAAAAACAAAAACAACAGAATCAAGC
+>chrV_498912_499362_2:1:0_5:0:0_8
+TTGTAAGGAAACGGGTTGTGGAAAAAAAAAAATACAACTACGTTGCCGCGAATCTTGTTGAAAAAGGTCTGAAATTAAGGCAAAAATGATACTGGAATTGTTAGTCTAGTATAATCGATCAACTGCAACAACCAAGTCTTTAAATTTTCAGTCCCTCTTGAAAGAATAGTGAAGGTTCATTTTTATTTTTACATAGTAAA
+>chrV_573344_573800_1:0:0_1:0:0_1
+TGCTAGCAAGATCATCGTAGATCCCCACGTATAAATCAGTAACGCCATCGCAACCTTCTTCAATAAAGTTTCTTACAGGGGCCACATTCAATCAACCGCATCGGCTCAACCTGATCATGCAATTAGCAAGCAACACTGTGTACGGTACAAACAGAAACGACACATATTTCACGTCGCCCTTAGACGCCAGTGCTATCAAG
+>chrXIII_88166_88586_6:0:0_6:0:0_a
+AGATTAAACCTAGATCCTAATTTGTTAGCAGGTGTCGTATCTCAAGCTATGAAAATGGTTAACCTAGATGACAGCGCTAATGGACAAGAATTAATGAACTTTTTCACTCATCCAGGTGAATGGGACAAATCTTATCCTTTGACACTAGGTTCTTTCATCAGGAACTCACCCAGAGGTGGTATAAGAGAATTTACGAAATT
+>chrXIII_93863_94369_5:0:0_3:0:0_7
+TTCGTATTTTATTAATAATTAGGAGGAATAAAGTCCGACATTTTATTCAAAAAAAAAAAAATAATATTTCACAACGAACAATCTATAAATAAAATATTTAACATATGCTCTTCCAAATGTACATCCTTTCAATTGATTTCACTCAATGACAACGCAATGGCCAATTGTAAGTCTTCATCAACATTATTACTAGCATCAAC
+>chrXIII_147038_147473_4:0:0_1:0:0_6
+CCAAATTGATTCCAGAAGTTATCACCAAGGAAATCGACAATGCTACCAAGGACATCTTCCCACTACAAAACATCCACGTTAGAAAGGTTAAGTTATTGAAACAACCAAAGTTCGACGATGGTGCTATGATGGCTTTGCATGGTGAAGGTTCCGGTGAAGAAAAGGGTAAGAAGGTTTCTGGTTTCAAGGATGAAGTCTTG
+>chrXIII_148415_148921_2:0:0_3:0:0_b
+TCCCAATTTTCGTCTGCTACTTTCTTTGTGTCACTTGATGACTGCAGATCCAAAAATCGAAGATGAGCACTTTCTTTTAGTTGGGAGATATTTTGCTCAGAAAGTTTTTCAATCTTGCTATCATCATTGGATAATGTGCCATTTATAATGCTTCCTGTCAGCTTGGTTACTTTTCCTAAGATGTCTAAATATTTATTGAA
+>chrXIII_310709_311229_1:0:0_2:0:0_1
+ATGGGCCTTTTTCGGAATTATATTAATGCTATCTTTGTTTTCCCCCGCATAAGGTTGGAAAACCTTCGAAAATTTTGAAAGAATCCATTTGTGAAAAAGTTTCAATGACTCTGATTCATTTTGTTGATTTATATGGTGAATTGCTAAGTTTTCCAATGCAATTGTATTATTTGGATCCAAATTTAAGCAATTTCGCAAAG
+>chrXIII_392912_393390_4:0:1_8:0:0_4
+GTTCGCATTGAGTGTATCTATTGCACATTTTTTCTAGATTATCAAAAGGAACACATAGCATTTTCTTGTAGAATTCTCAGATCATGTCAATTCGCTGTTGCTCCTCCCATTTGTTGAATGGCTTCGACTGCTCTAACAAATTGAGATATACGTTCCAAAAAGAAGATGATTTGGGTTCAACAATTGCACACTTTTGCATA
+>chrXIII_468755_469238_3:0:0_7:0:0_c
+TATTGGAATGGAAACCCATGTACATTTTATTAGTAAATTTTCTTATATTAATCCTTGGTGATTTATTTTCCAAATGGTCTTCAACTGAATCACGAATAGTATGTAACATATCATTTCTTGAAGTGTAAGTAAAACATATAAATAAAGTGAAATCGTCTCCATCCTGTGTGAATTCTTCCACTTTTTTAATTTTTTTTCAC
+>chrXIII_561181_561703_2:0:0_5:0:0_d
+AACGAGGTGATTCAAGTAAATTTCGCCATTGAGTCTACCAACAAACCCTTCCAGAACACCTTATTGATAGGCTTACCTAATAAGAACCTAGAAATGGCTTTTGAACCCGAAAATAAGGACAATGGCAAGTTGTCCATTTATAAATACAGGATAGATTTAGCCAAGCTGGATGCTGCTTTGTTGCAAGAGGCTTCCAGATC
+>chrXIII_584353_584902_9:0:0_3:1:0_5
+AACATCATTGAGGATAAGTTGGAGGAGCTCATTACTTTCTGGTAAACCTCGAAAATTTGTGTCAATATTTCTAGGATACAAAATGTATCCCCAACCAATACAATCAACCATGGTTTCCATCTGGATATCCTCAAAGGCAGAAAGTCACCCCGTTCTTCGTCAGTACAAGGTCTTAGCTTAGAGATGAAAGTTGACTTCAT
+>chrXIII_793234_793743_3:0:0_5:0:0_8
+GTTGCTCAATTCCTGGTTGTTTCAGTCTACCTTGATCATACTTGATTCAACCAGCTTAGCAGTCTCCGAGTTGGTGACATCAGCCTCGAATTGAGGGGTATATGGTAAGAATAAAGAAGCGACGATAATAGTCATTGAGGTTGGCCGTGGTTATTAGTCTGTGGTTTTTTGAATAGGAAGCAATAAATTATAAAGCCAGG
+>chrXIII_817055_817615_5:1:0_3:0:0_3
+TAAAAGAACGATTAAACGGTTTTTAAGGATGGTAGACTTGAGCGCTTGTTGGTGATACTCGAAAATAGCACTGGGGTCCGGTGTGGACTTCATTCCCGCAGATGATGACTACGATGGTTCTGTATTTGGGCTAAACAATAGCCGGGTTCTGGAACCCGGAGTCAAGTACAAGAAATTCTTCATTTTCAAATTGCCACTGC
+>chrXIII_826701_827229_7:0:0_8:0:0_2
+CCCCTGTTGCCATCTCTTCCCTTCCGTGCAGCCTCCGCGCTGTCAGATGGTCCTCCGGTAACGTAACCATGGGAACTAGCAAAAAAATTTCCTAATCTGAAATGAAGTTCCATTAATAAATCTGAGTAACATGGGCTCTGCATCAAGATGTGTTTTGGCGTCGTCTATGTTATCTTTTCTTTTTTCGAACAATACATTTG
+>chrXIII_833253_833690_3:1:0_6:0:0_0
+ACTCTACACAGTAGATATATATATAAAAAAGTCCCATATTATTTACATCCTATAGAATAAGAATATGGAGAAAAATAAATGCTAATTCTACTTACACATTTCTTACCAAAGTCTACCTATAATCATACCATCATCTTCATCGTCATCGAAACTATCTGGCCGCACTTTCTCCCTTTCCTTTTTGTTCTCAATCTTGTTTT
+>chrXIII_843242_843670_4:0:0_3:0:0_9
+TTTTATACGTTGTTCTGTCAATAATTTGGAAATCAAGGACAAACTTTCCAAATCCTTTTTGACAGGTGATGCTTCGCTCTTGGGTGTACCGAGTATCCTGTCAACATCTACATAAGTGGCCTTTGGGAAGTTGGACACAATGCCTTTCCGGATTTTAAAACTGTCATACATAATTTCAATTGATTTTCCACTGCATTTAG
+>chrXIII_875476_876017_4:1:0_2:0:0_e
+ATTCAGTTGCAGATCCCAAAAGTCCACCACTCTAGCAGATTCATAATCAACATTGATACATTTAATATAACTTTTCATTTTTCCGACAAATATTACATTTAACTTCCCCTCCACGGGTGTTCCCTTCATATTATTTTCCAGCCTGTCCATTAATATCCTATTCAATTCCTGCACATCGTGTTGAGTGAAGGATTCCGCAG
+>chrXII_14440_14929_3:0:0_4:0:0_0
+TACAAGACTAAGGTTTCTATACCTCAACCAATTGATACTTTATCTGGAATTATGGTCAGTTCGTGGGCAAAAGTCAGCCTTTATGACGTTGAATTCAATCTAGGGCTTGGGAAGCCCAAGAGTGTACGACGTCCGCGCTTCATTTCCCTTGAGAGCCTAATATATTTTATGCCTAGATCCTCCAGAGGTGAAATGGTGGT
+>chrXII_79515_79982_3:0:0_9:0:0_e
+AAGTTACCTCCTAGGTTCAACAAGGCGGTGATTTAGGTTATTGACGCATTGAGATTTGATTTCGCTATTCCTGTAAACGAATGCCACTCTAATTACAACTTTAACAAACATAATAATATATTATCATTGAATGATTCTTTTGCAAGCGATAAGGATGCATCTTCCCTATTGTAGAAGATCATTGCCGACCCACCAACCAC
+>chrXII_179129_179604_4:0:0_3:0:0_c
+ATTCAAATCACTTCCTTTGACGGTGGATAAGAGCTTCCAAAGAGAAAACAGTATATTGAGCGAGATTAATAGGTGGAACAAGTAGTCAAGACGTTCTGCATTCACCCAACTGACCGTGGTGTGATATATGATGTTAGCCTTCTTTAACGTGTGAAATGTCAACATGTACAGATGGATTCTGGATAGCCGGTTGCAAAACT
+>chrXII_219746_220211_0:0:0_2:0:0_f
+AAATATGTCAGACCACCACCAATGTTAACCTCACCTAATGATTTTCCAAATTGGGTTAAAACATACAACAAATTTTTACAAAACTCGCATCTCGGTGGTATTATTCCGACAGTAAACGGAAAACCCGTACGTCAGATCACTGATGATGAACTCACCTTCTTGTATAACACTTTTCAAATATTTGCTCCCTCTCAATTCCT
+>chrXII_224837_225269_7:1:0_1:0:1_7
+TACTAAGCAAAAATGAATTCTAGTAATTAATAATAATGATATAAAAAAGGCTAAGTGCACAATACTAAAAACGAAACTAAGATCCTTAGAGTGATTTGATATCACCTGCGAAAATACCTTTTTGTCTTTGATCATCCGATTTTACGATCCAGTCTAGGGGACATAAGGCGTTATAGGTCTTCCAAAAGACCTTGCACGGA
+>chrXII_329567_330050_4:0:0_5:0:0_3
+GACATGAAGCGACAGAAGCCCTACGGATGTGCGGCTGGAAAAGAAAGTTTCATGAAGAACCAGTTGATATATATTTTACTATATACTTTTGCTGTGTATTTCTATATGAGGCTAGTTGGTTGGTGGGAACTGGAAGTGAAAGTACTGATCTTTAGGGTGCAGCTGTTGGTGTTGCTGTTGCTGTTGCTGTTGCTGCTGTG
+>chrXII_343172_343673_10:0:0_4:1:0_9
+ATCATTATTTAATATGTCATCCAACCGTCTCATATTAGGTTACGAATTTGTTACACATTCTGGCCTTGCTAACCTCTCCAGGTCATCTTTGTTGCATCCAGGTACACTCTCTACCAACATTTAACCATTGCCCTCCGGATTCGCACTGTCATATTTATTAGCCTCTTCGCCGCACATGATGTCAATATCGGGTCGATAGC
+>chrXII_349489_350011_4:0:0_4:0:0_6
+TTTGACGGAATTTGACAATAGATAACCCTCCAGCCACTAGCTGAGTTAACGTCTTGGAGACCAAGCATAAACTATCAAAAGCGAGTTTAACGCATTTAGATTCGCTCATAGACTTAGAATCATCAAGCGCAATCATTATTTGATACTGACGTTTGCTTGGTTTAGTTCTTCTCAACCAGATTTTATCTATACGGAATTGT
+>chrXII_394208_394614_2:0:0_5:0:0_b
+GTTGACATTTATTGATGTATCTATTTCTTTGAGGGTTAATTAAAGATAACAAATTGCTTTCTTCCGCTAATTTGAGCCTATTGAATTTACTGGGAAATGCCAACGTGGTCAGACATCAATTCAAGAAGTTAAGTTCTCAGAGAGTGTAACTTGCCTGTTTGGTCGCTGCAGTGAAACTGCCATTAGCTCTTTAGCACAAC
+>chrXII_625955_626443_7:0:0_4:0:0_11
+TTTTTTTCATTTTTCATATAAAGAAGAAACACTGATATTATTATTATTCATCCCAAGAACGCTATAGTGTATATTCCTAGCAAGAAAAAAATAAGCAAAAAAATTGTATAATGAGCACTGCAACTACAACAGTTACTACCTCCGCTCAGGCTTCTCATCCTACCAATATATATTGCTCCGGTTTGCAATGTGGTAGAGAA
+>chrXII_662505_663100_5:0:0_6:0:0_1
+GAGAGCTACCTCCATAATGTCACTTTTCATTAATGAAATTGACTTATTTTGTATACAGCTAAGGCAATAGGACTTCGCTCGAAGGAAGAGAAAAAAAGAAAAGAAAATGTTTGGATCGCTCAAAACTCCTAGTATATTTTCAGAGGGCCTTCCACATATATTTCAGTTTGTGCCAACGAAAGTTAAAAGAAAAGCAAAAA
+>chrXII_804157_804654_4:0:0_5:0:0_2
+ATGGGCGGAGCAGATGATGGAAGTGGTGGTTGTGAAGGAGATTTATGATTTTCGGTTTGAATCTTTGTGGAAGAAACGCCGACGACGGCTCCTGGTTCAGACGTCCTGGCATTAATTTCTGCCAAAAATGGCAACCCGCCTGCAGGAACTTCAGAAGATGGTGGTGAGACTGCGTTATCTGTAGGTTTAATGTTTTTTGA
+>chrXII_807598_808081_4:0:0_5:0:0_8
+AGTCGGCCAAGAGTTCAATGTCTTCAAAAAAGTTTAATAACACCACGCAGTTCGGAAGTATTAGTTCTACCAAATTTACTTCGGGATTATCTTTGCTTACTCGAAAGTCATAGAGCGTATTGACTAGTTTTAAGTTTATTTCATTTAGAGTCAACGAACATTTATCAAGGGTGGCACCAGATAATAACTCAGCATAAGGG
+>chrXII_964131_964649_5:0:0_5:0:0_a
+CTTGGGCGATATAAGGTATCGCAAAAGATTGTGAGTAAACTCCTGCGCCAACACCCTCGTAATTGGCCTTATTTTGTACAGGAAGAGGTGCTGAATGAGATCCAAAGAAAAAATATGGTTTCCCTGATACAGCAGCTTTGACTAGAGCCTTTTTGTCATTTGGCAGTTTCGCAACAGGTTTGCAAAAATTTACCGGATTT
+>chrXII_1019223_1019749_5:0:0_4:0:0_4
+ATGGTACCACGCTATTTCTCAGAAGCTATTAACGGATTCAAGGATGCAACTATTTCAAAGAAGATTATAGGAATGTCTCTGTTGATGAGAACATTTTTATATACCCTGGCGCAAGAAACCGAATGCACGAATCGTCATACGCTTGCTCTGGAGACCGTCCTGATTAAGATGGTGAAGATGTTGGGGGACAACGCAGGGTA
+>chrXII_1023125_1023595_6:0:0_7:0:0_d
+CCATAGGAGTTGCGCTTATCGGAAATACACCATTCTAAGCCAGACCAAGCTAAGCATGACACAGAAATGAAACCTGCAAAACACCACAGAAGCGCAAACCATGTAACTCCAAGATGGTAAGAAAACCCGAAGGCCTCAAATTCTGTATTAATTCTAGACTGAATAGTGTAGATAACCCAGGCAAGGCTTATGCTACTTAT
+>chrXII_1036541_1037023_5:0:0_5:0:0_10
+TTAAGGGATGCCAGAACGTGTATAAAAGAAATGCTTGCACGGAATATACAGATGCTACATTTAGAACGGGTTCGTCCTTATCTGATGGAGTATATCGAATTATTGGAGATATTGTGATTTCTGATAAAACTGACTTTACTAGCAGTGATAATCGAGTCAATAAGACTGTAGCCCCAAATTTCCGCCATAAACCAATGAGC
+>chrXII_1065644_1066121_6:0:0_4:0:0_5
+TTTGATTAGGCCAGACTTTTCGTCTTCGTAGAATGACCGCACTTGCGTGGGGATCGATTCAAATAAAGTTATTGAGGGACAATGTACGAAGTCGTTTTTGTTATTTAGCGCCGACTCAAACTCGTCAAAGTTTGCTTTTTCAAACTTACGCCTATCGGAAACTTTCAATTTATTTTTGTAAGTTTCGAAATTAACAATAG
+>chrXIV_19790_20275_3:0:0_6:0:0_0
+ACAAATTTTTCTTTAAATTTTTTTAGTGTTAAAGGCCCTGAACTGTTGAATATGAACATTGGTGAGAGTGAAGCTAATGTGCGCAGAGTGTTTCAAAAGGCGAGAGAGGCAAAACCTTGTGTCAAATTTTTCGAAGAAATCGATTCAGTAGCACCGAAACGTGGTAATCAAGGTGATTCGGGTGGTGTAATGGATCGTAT
+>chrXIV_22782_23237_1:0:0_5:0:0_2
+TGGTTGCTCTAAGTGTCAAGTCTGGTCAGAATGCATGGACCGTCTACAAGACCCTGTCCGCTTTAACTATTGCACAACTAAATAACATTCGCATAGAAAACCCGACGGCGGGCTACCGCGATGCACTTAAGTTCAAAAGCTCACTGATAGACGAAGAACTGAAAAATAGATTAAACCAGTACCAGGTAGGCTTTGCACCG
+>chrXIV_27823_28329_3:0:0_3:0:0_5
+AACCACGTCCCAAGCTCATAGCAAGTATAAATTAGGACTAAGAACTCGTATAATGTTGTGTACATTAAGAATTTAATAAAAAATTTTTGATTCCTAAAACCAGTGCATTCAGCGAACCAAGGGCAAAGATGATCCATTTTCAATATGCAAACATCGCATGATGAACAATGATGACAGCGATCGGGCTTCCAAACATGGCA
+>chrXIV_118854_119338_2:0:0_2:0:0_8
+AATGCATGCGCACACTCGTCGGAGGCTGTACAACCGCGACTAACGGTAACTCGTGTGCTCTCATTCGACATGCCTTGCCAGCGCTATTACTACTTTTTGGATGATAAAGGATATGAGTATGATTATTGCGATATGCTTACTTTTACGCCACGAGTGATCTAAAAATTACTTCAGTGATGTATTATCCCCGCTAAACGAAA
+>chrXIV_201372_201956_5:0:0_7:0:0_6
+ACATCAGAGCTGCTGAAACTCTTTATTTGGCCAAAGCACCCATTGGGTCCCATATGGGCAAGACAATCGGCTCTTCCTTACCAGAGGTGAATTTTGAAGCCAGCTCTTTTGGCAATTCATTGCTATCGACCACAATTTGAAAGCCTTACTCCTCGAAGTACTTTTGAGTGATCACGTATAATCCGTCTTTACCGGAGTCT
+>chrXIV_340528_341049_5:0:0_2:0:0_4
+AGAAAATATTTGGACAGTGGTGATTACGCTTTGCAGACAGCTGGCATTCAAAACAATGATCCAATAAACTATGGAAAGAATAACCTGCCATTAACAAATCCCAGCAAACTACGAGAAGATATAATAAAAAGAAGGATAAGCACTTGTCCGTCAACTGCCTCAAGCGCTGTTGTAGTAGATAATGCGACGTTGATACAAAC
+>chrXIV_369689_370164_2:0:0_3:0:0_1
+CTGACGAGCTTGTCTTACTGACGAAGCAAACATAGCCCTGAAAAGGGCAAAATCAAGCCTTTTTTCTAATACTGCAAAAGTTTGTAATAAAAAAGGTGTTTCCTTGATTTCACCTCCACGCAGTGAAGCATCCAATTGTGCTACTTAATCCAATTTGGGTTTGAAAACGGTTTGCCATCTCTTTTCTGTCAAATGTTCAC
+>chrXIV_444006_444414_1:0:0_5:0:0_7
+AACGTTCATGGTATTGACAGCTCTCGGAATTACTATTTTTCTCGAACACATGAAAATTTCATACAGATACTGCTCAAAATCACTCTTTTTTGAAAAAATTACTGCAAAGAACCCCTTTAGAAGAAATCACAATGTTGCTGCTTCCAAATTATATAACTTTTAACATACTTCTCTGATAGATTTGCTTTGCAATGGTCTCA
+>chrXIV_500006_500526_4:0:1_3:0:0_a
+GCTAAATTCATTGAAGTCAGAAACTTTTTGGGTGCCAAGAAGATCAGAAACGTCCCAGTTAGAGATGGTGTTACTATCGAATTCTCTACTAACGTAAAGGACGAAATCGTCTTATCTGGTAACACTGTTGAAGACGTTTCCCAAAATGCCGCTGACTTGCAACCACTCTGTGGCGTGTTAGAAACAAGGATATCCGTAAG
+>chrXIV_611746_612236_5:0:0_3:0:0_b
+AAACATGGTTCAAACGCGATTCTATTTTATTATCTATGTCTTTATTATGTAGTCTTCAGTATAAAAACCGTTAATGAGGGACATAGTTGCATCAGTTTTTAAGGCCAATTTGATTCAGAACCTTTTCAAGTTCTTCACTTTCCATCTTATCCGAAGCCGCGATCTGGTGGCATCTAATACTATGCTTCTCGAATATCGTT
+>chrXIV_696249_696837_4:0:0_5:0:0_9
+TTGTTAGGTAGCTGGTCCAATTTATCGGTTTGCTTCAGGAACAACTTTGGTTTGTAAAGGTTCAAGCCGTTTAACTTTTCTGTGTTGGTAGTCAATGTCGCACTTAAGATCATTTTGATCACGTTCGCTGGAAGTGTATCTAATTTATCCGTTTTCCAATGGGACATAAGTTTTGGACACCAGCCCTGGAAGGACTGGTT
+>chrXIV_727664_728211_4:0:0_7:0:0_c
+TAAGACTGAAGCAGTACCCAGAAATGGCACTTTTTGTTTATATGACATAGTAAAAGTGTTCATTTGGCAGAAAACAAGGGTATCTGGATACTGCAATCCTCAATAGTTGGGGAGAGCTTTTATAAAGTTTTATTACTTCGATAATGCTTTGCTGCAGACCTGGGCGCGCACTGAAGCCATAAACTGAGTGGTTGTCCCTG
+>chrXIV_758471_759074_4:0:0_2:0:0_3
+TTCTATTAAGTTTCGTCGAATGTTCATATATAAGTTTCATATCGAATAATGCAGACGAAATATTGGAAACTGATTTAATTGAAACATTATCTTACGCTACTTTGACAGTAGGTGAGCCTTATGTTGCACAATCGGTGGTTGTAACAAGAGTATCTGCAGCTTCTCATAGCCCTCTCTCAGTTTCGCCAACAAATAGAGTG
+>chrXI_27284_27774_3:1:0_7:0:0_3
+AAAGCCTTTGATCAGCTTATCGGTTTTGTTACCAGAATTTCCTCCAGTTCCAAATGTAAAGTTGTTACAGTCACCTTGAGAATCTGCCATGACGTTAAATGTTTTTAAGATTACATCTGTCACTCTTTGGGAAGTTAATACATTGCCTCCGACAACAGCAGCACCGGATCGGGGGCTCAAGAGTGAAGCAGCAGGTATTT
+>chrXI_226703_227185_4:0:0_7:0:0_4
+ATCATCGGTCGCAGAAATGAAGAGGTCTAAATTCATAGACGTGTCTCGTATGGAGGATGGTGAGTGGGAGGAAATGCCGTGGCTACCGACAATGTTGTTATTGATAATGCTGTTATTGTTGTGATCGTTATAATTATTATTATCTTGGCCATCATTGTTGTTAGTGGCATCATCGTCTTTTCCATCGTGCTTATTGTTTG
+>chrXI_302795_303272_10:0:0_6:0:0_7
+ATCCACTGTTGTGTAACGTTAGTCATATGTTATAATTTGTATTCTCGCAGTAGAGGTAATTCACGATCTTAGGATTTGCGCATGTTTATGATCATAATGTCAAAATAAACTACGTAATGCGTACTTTTAAATCGTTCTTTTGCCCAAAGTAAATGCGCATTATTATAGCATACGTTGATGTTTCCAGTATTCTTGCGATA
+>chrXI_314675_315205_3:0:0_6:1:0_0
+ATTTTGGCCACGGTCTGGGAGGGAAAAGATGTGGTTAGACAAGGAAGAACTATTCTTGGTGCTACTAATCCTTTTGGCAGTGCACCAGGTACCATTAGAGGTTATTTCGGTATTGCCCTAGGCAGAAACGTCTGTCACGGCAGTGATTCTGTTGATAGCGCTGAACGTGAAATCAATTTGTGGTTTAAGAAGGAAGAGTT
+>chrXI_360709_361124_4:0:0_3:0:0_1
+CGGTGAAGATGTTATATCCAAAGAATTCCATGGTGTCCAAGAAGAAGAAGGAGAAGGTGGCTACAAAATAAATATGCCCAAATTTGAACTTACCGAAGAATATGAAGAGGTCAGCGAATTGATTGAAGAGCTGATAGATACAAGAATAAGCCCAGCCATCTTGGAGGACGGCGGTGATATCGATTACCGTGGGTGGGATC
+>chrXI_389403_389898_4:0:0_6:0:0_8
+ATCCATCACCCAATAAAACAACACCAAATAATGTAGATACACACATATCTATTAATTATACATTAGTATCCCCTTGACATACCCCAGTACCGTCTTCATGTGGAAAATTTTCCGTATTTGCTTTCCCCTTCTGTTCCCAAATTCTATAGGGTAAGCGATTCCTGCCTTGTTCGCCACATCTACGAGAACTTAAAGCCGGG
+>chrXI_436806_437329_3:0:0_2:0:0_6
+GATGATTTCTGATTAGGAGGAGACGAAGTCCCTTTAATGCTGATTTTCTCTATCTTTTCGCCGTTATCATCTAACCCGGAAAAGTTTCAACAAGACTTTAGCCTTTTAATGGAAACTCCCACTAGTTCAGCTTAAACAAAATAGAAAAGCTTCAACAGAGGAAAGAATAACGCAAAACCACCCTTTTCACTAAGATGCTT
+>chrXI_445827_446391_1:0:0_7:0:0_9
+GACTGTAAAGGATTATGATGGCAATGCGTATTACGAAATATCTGGTAAATGGAATGACGTTATGTATTTAAAGGCCTTAAAGCAACCTCGTTCTTCACCAAAAGTTTTCCTTGATACTCATAAAGAGTCACCATTGAGACCAAAAGTTCGGCCATTGAGCGAGCAAGGTGAATATGAATCCAGAAAACTGTGGAAAAAGG
+>chrXI_470772_471261_1:0:0_4:0:0_5
+TAATCCTTCAAATGCCACGGATTTCGATTCTGTTTATGCAAGAGTCGGCGATAACTTGAGGGTATCCAACCTCAACGATGCTGTAGAAGAGGATGTCTCCCTAAAGGGTTGGCCTCATAAAGTTTGCGAAAGCTGGATCGAAGATGCTAGAAGAAAATTAGAAGTCCAGCGCCTGGTAGAGATTCTTGACTGTGAAATAA
+>chrXI_609225_609808_8:1:0_2:0:0_2
+CTATGAATCAAACCGATAACAGAGGTGTGCTCGACGCAAAACTCGGAAAAGAACAGGAAAAAGAGGAAAGTTCAATCGAATATGAAAGTGAAGGACAGCAGGAGGATGAGAATGAAATTGAAAGCCTAAATTTAGAACCAGATCCTAAACTACAGATGAATCTTTAAAATGACCCACATCAAGATGATTTTCCAGAAGCA
+>chrXI_628737_629238_4:0:0_5:1:0_a
+TTTTTTTCACTTCTTGCCTCAGATATGTCAATAATACTTTCCAGGGCACCTAATACTGGTATATTGTTGTGTATATTGCCGAAGGGTTCGAGTTTGAAGACTAAACTTCCCAATATATTAGTATTTTGAAATGATGAACGATATATCAACGGAACGGTTCTGATTATTACGGCTATTGGAAAACTTCTTGACAGCTCTCT
+>chrXVI_47666_48026_6:0:0_6:1:0_f
+GCACGTAACCGGAAAACTCTTGGCCTAGTGTCAAAGGCGTGGCATCTTGCAAGAGTGTTGTACCGATCATCACAATATGGTCAAATTGCTTGGAATTGGCTTCAAGGGCGTTCTTTAAATTGGTCAACTCAGGTATCAACTCGTTTTGAATTTTCAAACTGGCAGCGATATGCATGACAGTGGGGAAAGTATCATTGGAT
+>chrXVI_174529_175059_1:1:0_2:0:0_2
+ATCCTTGACTCCAAACATTGTCGCTCCTCACTGAATAATGAATGGCTGGAAATCAGTTGTCAAATTGAATAATTTAGGAGGCAAAAAAGCACTTCGTTTATTGTTTCCTTCTTTTTTCAAACAGGCTTTCATACTGCCATTGTTGAAAGTATATCCGTGATCGAACCGCGCGGAACTAACTACAGGGATACTCCTATGTG
+>chrXVI_216257_216697_2:0:0_4:0:0_8
+TTGGGTAACGCCTATTAGGGAAAGTAGGTAGTTCCATGACCAACGATTAATGGCAATGATAGTGGGTTCTATATATGTACCGGCTCCATACATCATCTCTGTCCATTCGCTTTTCCATTTTTCGAACTGCAGTTTAGTGTTTTCCCACAATGTTGTGCCCAAAAAGACTTCGTCAAAGTTTACCGTATCAGGACATTCTT
+>chrXVI_286197_286773_3:0:0_1:0:0_3
+TCCTTAGGTTAGTAAATGGCATTATAAATTAGCAAGCGTAGCCTCTTCAGCCTATACAACAGCTGAACCTGCACAATTAATGTCATGTGGCCGACGTAATGCATATCCATCTTTTTTACTCCCTTAAAAGAAGGTTTAGCCCCTACTGTATACTCAATGAACAGATAATGTCTATCCATAAAGTATATCATTTCAGGAAC
+>chrXVI_289557_289973_4:0:0_3:0:0_d
+ATTGGAGGGTTAGGTAATGTTTACCACTGGAATTTCGAACCTGTTTTTGCCATTTATAACGAGATACATGAGGACTTTCAAGGCATAATATCTGACGAATTGGAGGCCGAAAGCAAGGCATTTTATCACACTGAGGGCTGCAGAAGAGCAATAGGAGAAAATAATAAGTTTAATACCGTTGCTTATCACAAATACATTGA
+>chrXVI_389175_389686_2:0:0_4:0:0_6
+GCAATCTCCCGTTAATTATGCTTTCCCTAACCCATACAAAATTCAACAACTACAACAGGCTCCTATCCAATCAGGTATGCCTTTACCAAATACCAACATACCTCCCCCAGCATTAAAAGTGGAAACCACCGTTACTGCTCCTCCAATTCGGGCAAGAGGGGTCAGCAATGCCTGCGTGGGAAGTTCAGCGTCTTTTGGTG
+>chrXVI_401813_402387_4:0:0_6:0:0_1
+AGTTGAGAATGGCAGCTCTAAACAACGAACCAGAACGTTTGTGAAGAAGGATTGAAGCGTGTAATCTTGAAACATTGACAATGTCCAAGCAAATGCCTTTGCTCCCATTATTCTAGTGTTCACTATTACGTCCAATCCTAGCAAAGTAATATCTCCATCAATCATAGGTGCATCGATATTGATATGTTCATTATTTTTTG
+>chrXVI_680224_680728_0:0:0_3:0:0_7
+GGACTACCTTTGACGCATGATAAGACGGCAAGAGACCTACCACAGCTGTCATCTCAACTAAATTCTATTCCATATTACTCAGCTCCACACGACCCTTCAACGAGACATCATTACCTCAACGTCGCTCAAGCTCAACCAAGGGCTAACTCGACCCCTCAATTGCCCTTTATTTCATCCATTATCAACAACAGCAGTCAAAC
+>chrXVI_693308_693805_2:0:0_2:0:0_c
+GGGCAGCAACTTCGTTACCATCAGCTGGTCTCCAAACTTGAATGTTTGGTAGGGATCTGAAGTGTGCTAAAGTTTCAATAGGTTGATGTGTTGGACCATCTTCACCGACACCGATAGAGTCATGTGTAGCAACCCAAATAACTGGGTGGCCAGACAAAGCGGACAATCTAACGGCACCAGCAGCATAAGAAACGAAGTTC
+>chrXVI_752128_752641_3:0:0_2:0:0_5
+ATGAGAAGTCTTACCAGCACTTAAACTGGGATACATATGCATGTAGTGACTAGTAATATCCAAGCCCAGCATTAATTGGAAGAAAACGCACCATTGGGGATACTGCACACAAAGGAAACACATCAAGCCAGCGGTACTGGATCTGTCGGTAACCATGTCCAGAACGGCACCCAGACTGGAAACCTTATTGTACTTTCTTG
+>chrXVI_763341_763881_3:0:0_5:0:0_4
+AGACTTAATCAAATATACTAACTTTGGCAAAGTCTGGGACTGCCAACTGAAACCTTTGGGATTCACTTTTTAAAAACTCTTTAGGATCCGTGGAGTTATGAACGTAAATTGTGGTGCCACCAGACCAGCAGAACGCCAGACCCGCACCATCATCTGTAATCTTATAAGGATCATGTGAACCATTAATATTTAAGTGGATC
+>chrXVI_766516_767017_5:0:0_7:0:0_b
+CTTTTGACCATTTCATTGATGTTATAATCAGGTTGCACAACAAGTGATGCTGACAATTTTCTATTATCAGCCTTATGCTTTTTGATACCTTCTTTGCTCTGGATACTACGCAAGACCCAAGAGTCAACGTCTTTCGCATCGTACACAGATAAAGAACCGTTATAAAGACTGTGCCGTAACAGTGGAGACGATGAAAAGAA
+>chrXVI_866925_867424_2:1:0_4:0:0_e
+ACGTTCTTGACGTCCTTTTTCAACCATAGTTTGATAGTATTGTCGATAGAAAAAGTACTTTGACCTGTTCCCACATTTGTAGTAGGAGCCACGGTGGTAATTCTGGAGTTGATAGCTTTAATCATCTTTTCATACTCTGCATAAGCTAAATTAAAATTAAAATATGCGTCTTTCGCCCTTAAGGCAACCCTAGCGGCTGA
+>chrXVI_889501_889988_11:0:0_5:0:0_0
+CAACAAAGATTCTCATACAATCCGCACAAAATGCAATTTATTTACGTCCCCAATACAAAGCCGAATGGGCTAGGAGGCAATGCGGGTTTTCTAGCAGATATAGAGGACAAAGTTCAAATGTTCTTGACACGATATTACCTCACGAACGACAGAGTCAAGAGAAATGAAAACTACCAAAACAGTGACATGTATACTCCATA
+>chrXVI_908795_909263_5:0:0_2:0:0_a
+AGAGGCAGATCAGATTGGCACTCACCCTTGCCATCAATATCCCCTTCGATGCATTATGGATCGTTGAACTCGAGAATGTCTCAAGGCGCCAATGCAAGCCATTTGATTGCAAGAGGCGGTGGGAATTCATCTACTAGTGCCTTGAATAGTAGAAGGAATTCTTTAGATAAGAGCTCAAACAAGCAGGGTATGTCATGCTT
+>chrXVI_912895_913350_7:0:0_5:0:0_9
+GAATATTTACCAACTGGTTGTATAACTGATCAATTTCTGAATTTTTAATTATTTCCCAGGAGAATGAATTTAGTTTAATTTGATAATGAGGATCACTAGGTTTTAGTTTTAACCTGTTCTGACTAAGGGTCTTACCTATTTCCGTTGTTTCAATATTAGACCGTATCTTTATAAGATTTCATAACGCGTCCTGGGGTGTA
+>chrXV_176307_176892_1:0:0_8:0:0_0
+TGCACTTGGCGTTGGGTCTGTACTCACTTGGATGTCTATCGTGCGATCTGTTCAACAAAGTTCAGCTAGGAATCTGAAAATTCTATCGCTACATTCCTTAAGAAAAACCTTTTGGGAACACAAAGCTGGCCATCTGGAGCCATTTTCTGAGGGATTGGCAATATTTTGGATAACTTTAGCCAAGCTGATGAAGGTACGCT
+>chrXV_178018_178568_1:0:0_3:0:0_6
+TTCCACTCGCGGTTTTCGGAGTCTCTTTCTAACGCATGATTAATAACTTCATCAACGATAATGTCAGTTAAGCGGCCATCATCTAAAAGTAGCAACCAAACATATTGCATGTATACGGCTTTAAAGTCAGTCTCTCTCACAGAGAGCCTGATAAGAATTCTGAAAATGTGAGCTATGTTTTCGGGGCCTTCTTCATCATC
+>chrXV_216562_216984_4:0:0_6:0:0_3
+AGTGGAAGGAAAAAAAACTAGAAAAAAAGTAACAAGAAACAAAGGCAAGACGAAAAAAAAGTAAAACCAAAAAAAAAAAAAAAAAATACTAGAATGACAGGGTAGAGAAGAGCTGCTGAACAATCTATTAATCGGAATAACAATGGCAATAGGTCCGTAAGGTAAACACTCTTCCCGTCAGCAACCCATCGGCACCTCGC
+>chrXV_277943_278444_6:0:0_5:0:0_7
+CATAAACATTATCTAAATTTGTAGACGTTGACAGATTCGGAAGGGCAAAGTAGTATTCTTGTAAAATCAATTCGACGTATTCTTTTGATAATATATACGTGGTTGTAATATTTTCGAAACCTAATGCTTTCAAAACTTTGATTAATCTTTCCACACGACAATTTCACAAATTGGCCAATTTAATCACAGAAATATAATTC
+>chrXV_279785_280344_3:0:0_3:0:0_4
+TCAAGTGTTGACGTTCGTGAAACTTTTGACTTTAGGTTAAAGAAAAAAATTATTAGGATTGGAGGTTGCAAAGTAAACAACGGTGTCATCAAAAAGAATTCATTGGTGCAGGTAGTTAGAGGTCCTAACGAAGATGTAATTTTTGATGGGAAAATCTCTACTTTGAAGCACAATAAAGATTACGTAGCAGAAGTTTCAAA
+>chrXV_309242_309769_3:0:0_5:0:0_f
+GGTCGAGTACAAGGGTGACTTAGTCTTTACGATTTGTGCCGACCTTGTGCTGAATTATCCCGTAGAAAAATTTATGACTTTGCCAGTAAAACTTTCTATCAGTGATATCGGTCTCGATTCCCTATGCATTGTTGCATGTTTATCAAAGCAACTATTTCTTAGCTTTCTGTGTGATGTTAGTGATCCTGCACTGGATGACA
+>chrXV_327632_328099_5:0:0_2:2:0_d
+TCTCTTTTTCGATTGGAGAATAAACTTCTGAAGAAGGTGTCAGTGGTCTGTACTTTGAATATTCAAACCTTCTTTTTGCGACATTTCTTTAGTCATAAAGAACACCTGCTAACTTATTAGACTCGATAAGTTTGTTTCACAACTGGTCATATATATTTAGTAAAAAGTGAGTATCTGCTCTAGCATATGCCGTCATGAGT
+>chrXV_363464_363905_2:0:0_7:0:0_e
+CCAAACTTTTTCCACGCTTCCGATGTTTCCACTTGGGAGGTGAACTCTACTTTTACAGATATCAATGACAAACAAATTTTACGAAAACTATACTTTAAATATTTGGATGTTAAATTAAACGCATTGAAAAATCAAGTAATCACACGTCAGGAACCTGATATGTCTAAAAAGGATGAAATTAAGAATCGAATCCAATCACT
+>chrXV_393534_394063_4:0:0_7:0:0_8
+CATGGTATATTTAGAACAGAAACACATTGTTCAAGTAATAATATCCGAAGATTCTGACCTCCTCGTCTTCGGATGTCGACGTCTCATTACGAAGCTGAATGATTATGGAGAATGTTTAGAAATATGTCGCGATAATTTTAATACACTGCCTAAAAAGTTTCCGTTGGGATCCTTAACTAATGAAGAAATCATAACCATGG
+>chrXV_424352_424860_5:0:0_3:1:0_5
+CTTACAAGGGTGAGCGCATCCACGCTTCTTTTTTATTTTTACTCACTCCTTCTGTAGCCTTAAGTACTCTCAAAAATTACTATTTTTATCTAGTTTTATAGAAAAGCTAAAAGAAAGGCTATATTTATTAGAGCGCGTGTTGAAATATAGTCACAACTTATTAAATGAGTTAAACTTTTGGTTTCCTTTAAGGTTTTTTG
+>chrXV_505758_506223_8:0:0_7:0:0_a
+AAGAAAGGTGAAAGGAAGAAAGATCATCACGAACAACATGTCTGCTCCACAAGCCAAGATTTTGTCTCAAGCTGCCACTGAATTGGAATTACAAGTTGCTCAAGCATTCGTTGAATTGGAAAATTCTTCTCCAGAATTGAAAGCTGAGTTTAGACCTTTGCAATTCCAGTCCATCAGAGAAGTATGTTATTACATTGAAT
+>chrXV_761786_762246_3:1:0_2:0:0_10
+GCCCTCGTTTTTTCCCTATGCGGAACCTACTATTAATAAGCACCTGGGGCCGGCCGGTGCAGCAGTATAGCAGTATATAACAACAGCAAAAGAAGCATATGTAGACAACGCTGAGGTTTCATTACAGCTCATACATCACCAACAAACATAGCACAGCATATATGTTCGCCAGACTCGCTAATCCTGCCCACTTCAATCCT
+>chrXV_874725_875249_4:0:0_4:0:0_9
+GAAAAAGTATGGGTGCGTCAGTTTCTTCCAAATATATACAAATGGTCATCATTTTCATTCCAAAGTATCTTTACCAGGTCAACAAAACCATTATTTTTCGTTTCCAATACGTAGATACCGTACAGGGACAACATGGATCCTCCATAGAGGCAATAAAGGGCGAGCTTATGCCATGTTGGATACTTTCCCTTCGGTATATA
+>chrXV_966647_967179_2:0:0_6:0:0_2
+TAAGTCAGAATACTCGCGTACAAATATATTCGAAGTTACCAACGAAGCGAAGTTTCAAGTCTTCAACGACCTAATTACAATTTTCAAATACTCTATCGCTCAAGGCGGGAATACGAATAGTAACATACTTGTTCTCACAGAAAACGGCAGCACCGATTAAAATTTGATAAGTTTACTGATGTCTACCGTATTGAAAGAAC
+>chrXV_993147_993632_7:0:0_2:0:0_1
+ACGTCATCTGTTATCTGCCAAACTCAATCGGTTTTTTCTTGTCTATCAATTTCTAAGCTGGATAGCCATTCAGAAATTGCATCTCCGATTTGTATTGGCACCCTCCACGAAAACTTATCACTAAACTTATCGAAAAGAAAAAATTTGTGACTTTGTGTAACCAACAAATTATAGAAAGCAAAAAATAAAAAATCAGAATC
+>chrXV_1055613_1056076_5:1:0_8:0:0_b
+CATAACACCTACCAAATAGGCGCAAATCATACCAGCAAAAGTATGACCAATGTCGTAGTTGGCGTAGAAACGATGGTAAGAATAATACTAGTTATCTCTCACTTGGGCATCCATCTCGATTGGATACGTAAGATTCGCGCTACCTTCAGAATACTGTATTATGTATGTTGTTCCATTATTCAGCATAATATAGAAATCTG
+>chrXV_1059149_1059680_2:0:0_1:0:0_11
+ATTATAGGGTCAGCGGTGTCGGTAACGACCTTAGTGTAAACGTTATTACCGTTAGTAGCAGTAATAGTCTTAGTGGTCATTACACTCGACACAGCTGCTGCCGAGACGGCAGTCATAACTGTAGTAGCTCCGAAAATAGTTGAGAATTTCATTATTATTGTTTTGTGATGGCTTTATGATAGACTTTTTTACAAGGACCG
+>chrXV_1059215_1059682_4:0:0_3:0:0_c
+TAATGATAGGGTCAGCGGTGTCGGTAACGACCTTAGTGTAAACGTTATTACCGTTAGTAGCAGTAATAGTCTTAGTGGTCATTACACTCGACACAGCTGCTGGCGAGACGGCAGTCATAACTGTAGTAGCTCCGAAAATAGTTGAGAATTTCATTATTATTGTTTTGTGATGGCTTTATGATAGACTTTTTTCCAAGGAG
+>chrX_20624_21148_5:0:0_6:0:0_6
+TCAGCATCGTAATCTGCGGATCTTCTTTCTGGTGGCACCCATGAGGCTTATTTCCATGCTGGCACACCTTCCCGCCACATAGTATTCACCTCCTCCAGCGTCCGGCCTTTTGTTTCTGGTACACAGAAAAAGACATAAAAGTATGCAAAAACCAGACAGCCTAAGAATACATAACCGTAGTAAAAGTTGATTGCCCCGGT
+>chrX_32511_32973_6:0:0_10:0:0_7
+GGTGGAGGTGTGGCGTCTCCAACTGAGAAAATATCAAACAAACAATTTTGCGACGACGAAATAAAAGCACTTGTAGATGTCGCAAATAGTTAGCACACATACGTAACAGCACACGCCTACACTGCGGAAGCTATACAAAATTGTATCAAGTTAGGTGTTAATGGTAACGAACACGGAAACTTATTAGATGAACGTACCGC
+>chrX_75095_75508_2:0:0_2:0:0_2
+CAATCTACCGTTCAATTGAACAACAATCTTACCAGATCTGTGGTCATCGATGTATTCAAATTCACCAATGTAACCGTGCTTTTGCATAACTTGCAAAAACTTTATAATGACCTTGGAGGATGGTCTGATTAAAACTTGACGCTAACCGGTCTTTTCAGCGTTGTTAATGGCATTCAAAGCATCAGCTAAAACGGAAGATC
+>chrX_131958_132464_9:0:0_5:0:0_0
+GTGAGCCCTTAATAATATCAAGAAGCGGCCCGCGCGCCAATGTTGCATCCTCGGATACAAATGTAGACGAAGTGTTTTTTAATCGACATGATGAAGAAGAATCCTGGATACTGGACCCAATACAGGAAAAGTTGGCACATTTGATTCATTGGATAATGAACACTACATCTCGTAAACAAACAATGAAAAACAAAATTCAA
+>chrX_185042_185518_4:0:0_1:0:0_b
+ATTAACTACTTATATACTTAAATTATATGTTTTTGAAATTTTTAATATGTAAAGCAAATCTGTACGAATAAAGGCTTTTTTCATATTTTATTTGCCTCAATGAAATAAATCGTCTCTTCTCTGGTTCCATAAGGGCATTTTGTTCCTTATTTCTTGCAAACGCTCACGATCCAAATCAGCGAGAATTAGTTGTGGTCCAA
+>chrX_204570_205015_2:0:0_10:0:0_3
+GCACAAGCGATAGAGGAGATGTTTAAAGTGTTTAAGCTCACTTTATAGGGTGAAACACATTTTGACGACCGTAAAAGGTCATTTGATTTGGTATTGAGGTCGAGAAAATATTTTCAACTAGTGAAGGATACATTAAACACGCTCACAAAACAACATAAAAATCCGTGATAGTTTAATGGTCAGAATGGGCGCTTGTCGCG
+>chrX_358634_359139_4:0:0_4:0:0_9
+ACCTGCTTATACATCAAAGCGAACACCTACAGTATAAACAAGGGTTCCACGAACTATTAAGCGTCATTTATCTGCAATTATATCACGGTACATATCTCGATAATACCGATTAGCAAAACGTTGTGATTATCTTTAACAAGCTAATGAACCAAATCGAACCGATTTTTTATAACGAAGAAAATTTGATTAACTGGGATAAG
+>chrX_382849_383384_3:0:0_5:0:0_1
+GCACCAAGAGGTGTACCTCAAATTGAAGTCACATTTGCACTTGACGCTAATGGTATTCTGAAGGTGTCTGCCACAGATAAGGGAACTGGTAAATCCGAATCTATCACCATCACTAACGATAAAGGTAGATTAACCCAAGAAGAGATTGATAGCATGGTTGAATAGGCTGAAAAATTCGCTTCTGAAGACGGTTCTATCAA
+>chrX_438844_439314_5:1:0_2:0:0_8
+AGGAAAGTCGTATAATGTCAGAACTCTTTGGAGTATTGAAATGTAATGCTGGCAGAATTATTTTGAAGGACCCCTCCGCCACTTCTAAAGATGTTAAAGGATATATAGCTTCAGTTATCAATACCTGTAAGAAAGGGAGTATTACAAAGAAAGCAGAAGTGGCCGAAATCACTGTTGATGGTTTAGACGCCAATCAAGTT
+>chrX_582991_583504_1:0:0_3:0:0_a
+TCAACCAATTGAATTACATAAGCTGTCGATTGTCGATAAACACTCCCAAGGACAGCAGCAACAGCCGCATCAAAAACAACATGAAGTGCAGCCTGAATCAAAATCACCAATGGTTACGACACCTTTAAAGCCCAAAAGACTTGCTATACCTATATCAAGTCCGCACAGCTCTACGACAAATCAGTCACCCGTGAGCGACC
+>chrX_610495_611012_5:0:0_2:0:0_5
+TTTTCAGCACATTATTACTATTTACGAAAAAAGGGAGTAGGGAAAAATGGCGCGCTTATGGATCCTCAAATAAGGACAAAAAAGTCAAGTAATGAATATCAAATTGAAATGAGTATGCTTACATAGATTTATTTGGTATGTTTTCATTTTGTTTTTGTTTCTTATGTTGCTGCTTTATTTTGTGTAGGTAATAAGGAAGA
+>chrX_743509_743937_3:0:0_2:0:0_4
+ACAGCTCGAATCCCAAAAGATTGTTCTACCTCAAGATCTTTTCAGAAGCAGCTTTACCTGGTTTTGTTATGAAATTTACAAGTCCTTAGCGTTTCCGAACTTGATGCTATTATGGCTACCACTTAGCGTCTGGTGGAAACTTTCCAACAATTGTATTTACCCACTTATAGTTTCACTTCTGGTCCTGTTTCTGGGACCAA
Binary file samtools_fastx/test-data/samtools_fastx-out3-2.fasta.gz has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fastx/test-data/samtools_fastx-out3-3.fasta	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,396 @@
+>chrIII_58852_59360_5:0:0_4:0:0_4
+AATTTATCATTGCGTGGGTACAACCGTGCACCATTTCTGAAAAATTTGCGATGAGCATCCCTCAAAATCCGTATTATCCGCTAGTGTTTTGAGGTTCAACAAGACAACATATAAGAAGGGAAGAAGGACAGGAGGCAATGAGAACTTGGGTCTAGCTCGAGAGTCCAGATCCACATGCAGGTTCAAAAAATGGTGCGAGA
+>chrIII_65894_66394_3:0:0_8:0:0_1
+ACAATCAAGCTTTACACCTGCCACGTGTGGAACTTGTTCGTACATGTATTGCTCACAGTACGATCGTTCTTTGTGACGGTTACGAAGAAGCCCATGAAATGTCCAACCAATATGCACCATAACATTTGATTCTACAAATCGCCAATGCTAACGATTATGTTAAATTGGTTGACAATGCATGGTCCTTATTTGTGGGTGCT
+>chrIII_80246_80792_1:0:0_3:0:0_0
+GTTTCAAACTGGACTCTGTAAGGGGATCGAATAAGAAGAACCGCAATAAGATAAAGAAAACCAAAAAAAATAAAAGATCTAGCACACTTTCGTCATCGTCATCATTATTATTGAACAACCGAAGCATACAATCTACGCCACGCAGACGTCCATCCAAGAGGCATTCCAGGGAATTCTCTTCTAGCAGGAAGAGATCGTCC
+>chrIII_209470_209900_3:0:0_9:0:0_2
+TCGATGAACTGTCTCCATGACCTGTTGGAATTCGACGTGAATTGTTGGAATGCTGTGGGATTTTTGAACCTCACCAAATACTCCTCTGCGTATGCGAGGTTGACCAGCAAAGAGATGAGTATGCACTGTGGCTTCCTGACGAGTGTTTTTTTGCTGTTTTTCTTGGCGGATGTTAGAGGATGTCTAGCACTTGAGTATAC
+>chrIII_238949_239533_6:0:0_6:0:0_3
+AAAATAGGCCATTGCGAGTCTTTCAGGCCTGTCATGTTTTAAGTAAAAGTTTTCTTCATCAAATTTGTGCCCAAAGACGGTGAAAGGACCCACATCTGGGGCAACCCCACCACCGTGGATATACTTGTTAGGGTAAACCTTGTTGATTTTGGTCTTACGGAACGAGTAAGTATGTATATCATTGGGATCTTTCCCTTCGA
+>chrII_128532_129141_1:0:0_5:0:0_c
+ATGCCAATAGAAACAACGGCACCCAGTCAGGAAATGAGACAGCAAATCCAAACTTAACTGAAACATTAAGTGATAGGTTAGATGGTTATTTGAATGAATATGGTATTCCAAGAAGTCAATCCTTGACATCGTCTGTTGCAAACAATGGTCCTCAATCCGTAAGAGATGATGTTGCGCTACCGGAAACGTTGGAAGAACGT
+>chrII_178741_179333_0:0:0_5:0:0_7
+GGAATCTTCAATACTCAACTTCTTTACCACTTGTAGGGCTGCTTTACGGTATATTTTCTCGATGTGTTTTTTCAAATTCCTTACACCACTTTCTCTACAGTAGTACTTCATTAACGCTGTTATTGCATCTTCTGTCATATCAACATGAGAGTTTTCTAGACCAGCGCTTTTCTTGGCACTTGGAACTAAATACTGCTCGG
+>chrII_185770_186311_6:1:0_5:0:0_6
+AAATGACATGGAGGCAATGGTTAAATAACGCATTGAAACGTCGTTATGGTATTTTTGGTGAAGGTGTAGAATATTCATTCCTGCATGTTGACGATAAGCTGGCTTACATCAGAGTAAATCATGCGGATAAAGATACATTTTCTTCGTCCATCAGTACATACATATGTACTGATGAACTCGTGGGTTGACCATTAACAGTT
+>chrII_371362_371914_8:0:0_3:0:0_5
+AATTGGCACCAGCTGGCTACTCGTTGCTCGAAAACTACTCTCTTTTATATTTAATTTACGAACGATTATCTTTCGAAGGAACGACCAAACGAGCTAAATATGGGCATCGCCAACGTTAAAAAAATTGACCCTACCGAAGACGTTATTATGCCAAGGCGCAGCGAAGATTCTTTCTCCTTGAGAAAAAATATGCATGAAAC
+>chrII_462520_463118_3:0:0_3:0:0_b
+ACCGTTTTAAAGCAAATAAGGGAATTTCTTGAAGAGATTGTAGATACACAATGAAGGATACGAAAATGCACCTTAAATCCCAATATTATTACATATGCTCATCGGGAAAACCTTATAAGCAATAATAGATTTTAAGTATGTAAAGATACAAATAATAATATATTTATATACGCATATATTTACATGTGCATATATGAAAA
+>chrII_464058_464495_1:0:0_2:0:0_1
+GCGCCAACGAATGCCTCTCCTGCCCCACCTCCTGTGATTTTACAACCTACCTTACAACCTAATGATCAAGGAAATCCTTTGAACACTAGAATTTCAGCCCAATCTGCCAATGCTACTGCTTCAATGGTAGCACAACAGCATCCTGCTCAACAAACGCCTATTAACTCTTCTGCAACAATGTACAGTAATGGAGCTTCCCC
+>chrII_482749_483235_3:0:0_1:0:0_0
+TTGGAGATTCTAAAGTTTCACCGGTGACTGGGTTACCGATATCGTATTTATCCATCAATTCACCTAATTCTGGGCCGGAATAACCATCTATTTTAGCCAAAATTTCTTCCTATTCTTTGACAACGTCGTCATCCAATTTGACTGCTTTAATTTGTTTAACTTTTTTCTTTCTCTTCTTCTTTTCGGCATCGTCCTTAGCA
+>chrII_509290_509702_4:0:0_3:0:0_4
+TTCATAGCACATTCTTAACGAATCCACTTGCAAGTTATTCATTGCTTCCAGATTGCACGTGAAAATGCAGTCAAATTCAATAATAATCCCGTTTAAAATATCAGCGTATGGAGTTCCTTTTTCTGCCTTGATCATAATGTCCAGAGAAATATAAGGTAGCAAAAAATTTGATAGTGAGCCATCATCTTCCCTAATCAAAG
+>chrII_551662_552193_3:0:0_4:0:0_2
+AAGGTTTGTAAGCCGATAATTTTTGGATTTACGAGACTCTGGCTTGGAGATGTCAGCAATATTCGGAGAAAGTTTTCTTAATGTTTTCTCTTTAATTTTCAAACGATGTGGCGTTTGCGACGTTGTTAAATTTTTATTTTTATTAGGGGAAATATACGCTTTTGTTGGTCTCCAATAACCTCTTACAGGGCTTTGGTAAT
+>chrII_561725_562138_6:0:0_5:0:0_9
+GATACTTCCAAAGATGCGCTAACAGATGAACATCTGAACCCCCCCAATGGCTTCAATTGACCATTCTATGAGTCTCCTCCTCAACTCATACCGAAAATCATTCATCAAACCTACAAAACAAACTATATCCCAGAACAGTGGGTAAACGGGAGGCAGAAGTGCATTGATTTACATCCGGATTACACTTACAATTTATGGAC
+>chrII_600174_600690_0:2:0_1:0:0_3
+AAAAATTGTCCCAGCTTTTTGTTGCTGTTTTGTTTCGAGTCAGAACCAGAATGTAGAGAAGAAATTTGCTCATCCTCTCTAAACATACATTTGATAACCCTCAGAGATGATCCTCGCACTTGTAGGTCAACTATGTAGCTCATATCCTTATTTTATGTCTTCAGTTTGAGATCAGAATATTTTTATGAAAATGTTGTCAC
+>chrII_688026_688533_5:0:0_2:0:0_8
+GGGGATGCTCGGTGCTGCTTATGTATTAGAAGCAATTGCAAATGATAACATTATTCCTGGTTTGGAGATTTTTGCTCATTCACCGTTATATTCATTGATTTTTACATGGATTCTAACACCGCTATGTTTGTTTTCAGCCGTCAATAAAAACGCCACATTTATCACAATGACATTCTTAATGACGTTTGTGGTCATGAATT
+>chrII_798295_798806_6:1:0_5:1:0_a
+ATCAATACTAGATGTCACAGCCACTTTGGATCCTTCTATTATGTCAATCATTAGATTAACTCAGTCAATAGCAGATTTTTTTTACAATGGCTACTGGGTGGACATCTCCAAACAATTCATGTCACTAAGCCCGGTTATCGATATGAAGAAAATTATATATAAACGTGCTGAAGATGATCTTTACCTTGCGGTTATTTTAC
+>chrIV_125433_125964_0:0:0_4:0:0_10
+GGAACGCACGGATTCATCTCTCTTTGTTGAACCAAATGGATCCGATCTTCTCTAGTTGAATTGTGCTGTGCTAAGCTGATATGGATGGGTGCCATTAATAGCTTCAATAGCGCCACGATGTGAAGATGCAGGTGGCCTCCATTTTACAAGTACGTCCTCCATTTTTCCCACAAATACATTTTCTTCTCTTCTACTTCTGC
+>chrIV_144073_144624_1:0:0_7:0:0_b
+TGTGCGATTCACTAAAGCTACATAGAAAAGATCGGTTTGTCGACAAACTTGCTCTAATCGATTATGACGGTTTAAATGCACAAAAAAGAAGGTTAGATTACGATGAAAAGGACCTTTATACATTCATTGTGAAAAAGGTAAAAAGAGACTAAATTGAGTTGCATAGATGTTAGCCATAATAGAAAATAGCGTATGAGGTA
+>chrIV_173050_173669_2:0:0_1:0:0_17
+ACTTGTTTCAGTTGGGGAAAATTGGTGCTGGAAATTCTGGAACTGTGGTGAAGGCACTACATGTTCCTGATTCCAAAATAGTTGCCAAAAAAACCATTCCTGTGGAACAGAATAAGAGTACAATCATCAACCAATTAGTTAGGGAATTATCTATCGTCAAAAACGTTAAGCCCCATGAAAACATTATCACCTTCTATGGA
+>chrIV_182621_183117_1:0:0_3:0:0_16
+TAATGAAGCTCATCTCATCATAGCTCATCTGACTGATGCTTTTCTACAAAAAGTTTTGGAGGAAGAGAAAACATATTCGAGTGGGTGTATAGAATAATATGGTACGCAAAGGCTCAAACAGAACTAAGACCTCTGAAGTTGGGGATGAGATTAATCCGTATGGTTTAAACGAAGTTGATGATTTTGCTTCTAAAAGGGAA
+>chrIV_186784_187257_2:0:0_5:0:0_12
+TCATGTAAAACATAGCATACTTGCAAACGTAACCTAATCCGTCCACATATTCAGAATTCTCTCTGAAGAAATCTACAATCCTTCCGGCTGACGCGGGCAACGAAAACCAAAGTACAAACGGTGTTATCATCAGGCTAGTGAGTTCCCTCAAAAGTATTACTATTCTCAAGTTGTACAATTACCAGAACTCTAGTTTGATT
+>chrIV_244937_245365_5:0:0_6:0:0_14
+GCCTTGGCCATGACAGTGCAAGTGCCTCTTCCGCTTCCAGAAAATTTGAAATAGACTCAAAGACAGGCCTTCAAAGACGTGTAATTGGACAGTACAACAAAGATCGAAATGATTTCGATTTCGATATTGATGACCTAATTAACGCAGATGAACTAGATGAACGGATAGACGAAGAGAAAAAGTAGAAGAAGTACAATGGT
+>chrIV_249898_250451_2:0:0_3:0:0_8
+GAACTGGCCGAATTAAACATAGAATACATTGATAAGATGACTTGGAAACGGTGTATTAGAGACGGAACTATGACATTAGACAGTTGGGCTCAAACAACTTTTTCAGCAAGATCCTCAACTGTTCTGGAAAAGTTAAGAGGCATATACCTTTTTTGCACAGAGATGTTTGCTCTGACTGATGATAATGGAACGTCAGATTT
+>chrIV_559435_559935_6:1:0_2:0:0_18
+TGCGCCCACATTGTCCAATCTTCTACCCAATGAAAAATTATATGGACCAACGGATAGAGACCCCAGAACTAAAAGAGACGATATTCACTACTTTAAATATCGTCATGTATACCTTTATGACCTATGGCAAACTTGGGCCCCCATAATAACTTTGGAATGGAAACCTCAAGAACTAACAAACTTAGACGAACTACCTTACC
+>chrIV_563824_564394_8:0:0_2:0:0_5
+ATTCTTTGAACCTACAGAGTTTGACAATGTTGACTTCTGCTACATTAGGGTCTTTACAGAGCGTTGATAGTATAAAACTGATTACTCTACCCGCCATCTCCAGTTTTACTTCAAATATCCAATCAGCTAACAACATTTATAATTCCGACACTTCGTTACAATCTTTCGATGGATTCTCAGCCTTGAAAAAATTTAACGTG
+>chrIV_580788_581307_6:1:0_1:0:0_a
+TTTCAATATGAAATAAAAATAACACTTTCAATACAATTGTTCAAACACAAGCATGACAAGTGAATTTGGAGTGTTTATACTTTACTCAATGACTTCAGTTAGTTGAACAATTGCCTTTTGGAAGGTACATTACAAGAAATCAAAAACTTCATGAAGCCATTAAAAAAGATGAAAAAACAACTGAAAACAACGAAAATCCT
+>chrIV_643692_644219_1:0:0_2:0:0_3
+TGGAGGAAGACCCTGATTTTTTGCAGCATGCTCTCCAATCTTAAATAAATAGATGTATTTAGTGTCAATTGAAACAGAAAAGTCTCCATTTCCAACTAATGGTATGCAAGCATTTTTATATGTGTGACATAATGAATGGCTTCTGGTTAAGTTTGGCTTTTTGAACAACCATTGCCCGGAGAAAAAAAACGCGTGAGCAG
+>chrIV_841170_841687_3:0:0_4:0:0_f
+GGTTTGAGCAACTGGCCCATCAATGATAAGACATCTTGACCACCTTGTGGTCTTGCGTTTGCAACATCCAAATCGTGCAAGGTAACATCTTGTACAATTTCCTTTTTCTTATGCACTTCGCCTTTTGGCAATGGTACGTATTCCTCAGTTTCCAAATCAAATTCAGTAGCGTATGCATCAGATCTGCCCACTCGCTTAAC
+>chrIV_847233_847818_5:0:0_6:0:0_d
+TGTTTGGTCTCAACTTATTCATTTTATTCATAGCTGCCCTGAAGTCAGTCCCACCAACTAAAGAGACAGAAGCGTACTTTTTCAAGGCATAATTCATATCGTGGATTTTTTTCACCTCTGCTTCGATTTGCAAGGCCCAATCTCTTGTTGGTGCGACAAAAACAGCTTTTACCATATATTGAGAATCGAACTTCGTATTT
+>chrIV_870726_871233_6:0:0_1:0:0_e
+GCTTTCCTCCTTTGGTTGACCTTGTTGGACATAGACTGGTTGCTGCTGAGGATAACCCTGTTGCGGTGGACCTTGTTGATAATAACCTTGTTGTGGTGGACCTTGTTGATAATAACCTTGCTGTGGGGGTGCTTGTTGGTAGTAACCTTGTTGTTGGCTCATTAGTTTTCGCTCTTTTGACTTGTTTCGAAGACGGATAG
+>chrIV_876300_876846_11:0:0_4:0:0_0
+TGTTGAGCAAGTGTGTTGATGTAGTATAGTAAGTCAAATCTAAATTTATATCCAACATATGAAGCTAGCCCAATCAACTTTTGCATTTCATGCACTTTCTCTTTGTATTCATCTTCATCTATTTCTAGTTCAACCTGTTCTATATAATGACCTGGTTGACCTGGAGCTCTAAGTTACTTTCCTTTTGGGTTCAAAGGTAC
+>chrIV_882753_883176_3:0:0_5:0:0_9
+ATTTGTTTTTTGATGATTCCGAGCTATAACTTTGGGTTTGGTTGTATTCGTATAGCTGCGAGAATCATTCTTCTCATCACACCGATTTCTCCTGTAATTAGGTTTGCTGTTTCTCGATCCCTGTTGTTCTTCATAAATAGCATGGATATCTAAGAACAGTTCAGCGACTGTCATATTTAGATGTCGATGACGTGTGTAGG
+>chrIV_946167_946637_1:0:0_2:0:0_4
+TCAGCTAGGGAAGGACGGGTTTTGTCTGATGTTGTTCGTTTTGTTATAAGGTTGTTTCATATGTGTTTTATGAACGTTTAGGATGACGTATTGTCATACTGACGTATCTCATTTTGAGATACAACACCTCGCAAGAAATCGACTCTCGGTAGCCAAGTTGGTTTAAGGCGCAAGACTGTAATTTATCACTACGAAATCTT
+>chrIV_1060041_1060548_1:0:0_3:0:0_1
+ACGGAGGAGGCTCAACAGAAAAGGCATGCACTATCGAAACTAATTCAACAAGAGACTAAACAAGCTATTAACAAACTGTCTCAATCAGTTCAAAGAGATTCTTCGAAGGGTTATTCCATTTTACAACAGACAAAATTATTTGACAACATCATTGATTTGAGAATAAAACTACAAAAAGCTGTAATTGCAGCAAATAAGCT
+>chrIV_1177126_1177640_7:1:0_3:0:0_15
+ACATTGAAAAGCTCCTCCTGCCAATTAGATATTCGGAGCAGATTCAAGTAGTGGTGAATGGGAAAATTCAATATGTGTTCGTTTCCATCATTGTGATTACGCAATCCTGAGCTTACAATGAATTTGAGTTCCTGTTGAAATGTTTTGATGAATAACTCAACATTACCACTTTTCAAAAGGTAATCAAGTAAGGTATTGTT
+>chrIV_1195691_1196148_1:0:0_3:0:0_6
+TAATGTTTGTCATCGCCAAGTGCCGTGGCAACATCCTCCAACGTAATCTTGTATAAAGGTGGAACGACTTCCGGTGGCATATTAATCAGCCTTTCACTGAGAACCAAAGCCCAATTTTTATTACCACTATCAATCATAGTTTTGAAGAAAGTGGAAAGTCTCATGTCCACTTTTTGTAAATATTTGACATAATCACTTAG
+>chrIV_1244113_1244597_3:0:0_3:0:0_7
+TACCGACTAAACCGATAATTTTACCGGCTGGACAGTCATCGATTGGTTCGACAAATCTACCCATCATCAAAACAACTCTTTGAATGGCCTTGATGAACAAATCGTCCTTCTTAGCTGGAACGTAGTTTGGACCTTGGATTCTGACCTTTTGACCGGACTTAACAGTACCGGCAAAAACTCTACCTAAGGCGTAGAATCTA
+>chrIV_1284104_1284638_3:0:0_6:0:0_c
+TAATCCATCTTGGTTGTTTTATTTGGAGATGCAAACGCTAAACTCGTACCGGCCTTTTTCAATTGGAATAATTTCTAAGTTAATTTCAGAAACTTTGGTTGTACTGATTGGTTTAGTTAACGAACCATTATACAAAATTCGTCTGTTCGATCTTGGTAATATTTTTGATGTCTTGCTGTCGAAAATCACGATGTCGAAAA
+>chrIV_1330536_1331017_4:0:0_2:0:0_13
+TAATATTACTTATTAGTTTCTTCAACTTAACTTTATAGGAGTTCAAATTCTTTGAAATTAGCCTGACCCAAACTAACAACTATATTTGTAGGTTTTTGCATACTCAAAGGACTAAGATGATAGGATATTGTATATATTCAATTGCACCTCTTAACTGGTACTTTATTTCTTGTGAATGTTCGATATCTTACCGCTTATTC
+>chrIV_1429030_1429503_8:1:0_4:0:0_11
+TTGGAGATATTTACATTCACGTCACATATATACGCCACTGAAAATTTGACAATAGGACGTATCTAAATAATAGCCTTGCTTTTTTTTATCAATTCTCGCTAATAAATTACTCATCCGGCAATAACCTATGCTCACCCGCCTCGAAGCGGCGTTAGGAGATAACAGTGGCCGTGTAGAGGGACGTCTTAGCATCGAAATCC
+>chrIV_1492123_1492615_1:0:0_5:0:0_2
+TACAAACTTTGGGGAGAATACTTTATAAGCTCGGCCAAAAAAGCTACTACCAGCTAGTGCCAGAAATAGATGCAGACACATACAAGGAAGACGGAAGCATATCGAACGTTATGGATAAGATCTATTCCATGTTTTGGGACTTGATTAAAGACGGAAAAGTCATCGAATCCTTAGAAATCTCCTCTGATGAGAAATTCACT
+>chrIX_80744_81245_3:0:0_7:0:0_2
+CTTCAATAATACTTCTTGCAAAAGCTCTCTACGTTCTCTGGGTGAAGCATATGCCAAATTTGGAATGTTCTCCATTCCGTGTAAATGTGTAATGACTTTGAATGCGTAACCTTGAACTACCAAAAACGCTTGTCTCTTTGTTGAGTAGTACATTTCTTGGGTATCCTTAGAAACCAGAGAATAAAAGAACGCATTGAAAC
+>chrIX_112304_112798_3:0:0_6:0:0_3
+TGACTACTTTGAGACATCAAATGGCTACAGATTGGAAAAGTCCCTCTGAATATGCTCTTCATCTACTTTTTACAAAGTTTATTCGTTACGCGGAGAACAAACTAAATATGTGTCTACAGCAGTTGGACATGGCGGAACCCCCAATTGTCGAAATTCTTGGTGACGTCGTTGATCCCAGCTTTGATGAAATTATTAAAACT
+>chrIX_267301_267746_2:0:0_8:0:0_1
+GTCGATGCTATTGACCCTGGAGTCAGAACGACCAGCAAGCCCTGCCGCATATAGACTCGTGGACATGTCAACATTCGAACTAGACCGGTTCAAGTTGTCGCGCTCATAATTCTTCTGGAGCGAGTAATAGTGCAGTTGCGACTGTAAAACCTCAAACTTCTTGTCGCACTCCTTTAGCAACCCAAGGTAAAACTCGTTAC
+>chrIX_317800_318294_1:0:0_6:0:0_0
+TCTGGTTAGAAAAAATATTACAGACGAATCATAATCTGTCAGGGACAAGGCCAGAACGTTACTATATCACATGGACCTGCATTTGAAAGTTAAATGAATGCACAGAACTCGTAGAATTTCCTACAATTAATTTATGCTATCGTTTTTTAAATAGTATTTTCGCAGAAGAATCCATAACTGCAAGCTTACGTTTAACAAAA
+>chrIX_363622_364118_4:0:0_3:0:0_4
+CAGTTCTTAGTGTATCCATAAATACTCCCCCTTTCGCCTTCATAGAATGAAATATACCACCCATTCCGAACAGGTTCTGGGATGCAAGAAAAATTTCAGCTTTATCGTAGTAAACGTCGCCTATTGTGTGTAATATGTCCAGACCAAATGATTCCATCTTTAAACGATTGGCTTCCTCTTCGAACTTTTTTTTAAAGGAA
+>chrIX_372554_372983_9:0:0_2:0:0_5
+ACAACCACCAAGTTTCATAAAACCAGAAAATCATTTAGATTTGGATAGTCCCTCGTGCACTTTAAAGAGCGACTTGTCAGGGTTCAGCGGTCTTGATGCTATAATGAGACCATTCCCCATACCAATTCACGGAAGATTTGAGTATGCTGAGTTTAACTAATGTAATAAATCCTACCTTTTGAAATTATTAGGTAAAACTA
+>chrIX_405615_406160_6:0:0_3:0:0_6
+CAATTAGCAAAAACAGCACCACGTTGTGGTTTCTTCTTGAAATCTACTAATCTGGGCGAATACTCAACTTCATTGGGGAACAAGCATTGATCAATGAATCGGTTCGTTTCCTCGAATTATTGCAGCACATCAGTCACATCATCATCATGGATGGGTATGTTTTTTAGCGAGTAACCTTTCCTTATTAGATCCTCTGGAAT
+>chrI_25874_26397_2:0:0_7:1:0_2
+ATTTCAGTGGATGTAGAGGTAAAAGTGTCGTTCCATGGCTGAGTTGTAGTCATGGCAGTAGTGTCTGTTGTTGGTGTTCTGATGACAATGATGGTTTCATCAGTTGGCAAACCGTTGGTACCGGTGACGGTGGTCCTTTCAGTGGATGTAGAGGTAAAAGTGTCGTTCCATGGCTGAGTTGTAGTTATGGCAGTAGTGGC
+>chrI_93599_94144_3:1:0_9:0:0_1
+TGTTATATCTAAGCCTTCCAAGCGACCCACACACCATTCGCATTCATCAGACGGGAGTTCTAGCACGCAGACAGATATATCGTTACAGAGCTTGCTTTACCATGATCTTGAAAGCTCACCAAAGAAACATGTTTCGCCGTCAAGACCGCCCTCTGTAGCTTCCGAATCCTCTCCTGCCGTTGCTCATCCCATTGGGCTTT
+>chrI_139586_140147_6:0:0_3:0:0_3
+TGCAGCGCCACCTGGAGCACCACCAGCTTTGTACAACTTAGAGATGATTGGGTTGGCAATGTCTTGCAAGTCCTTCAACTTGTCATCGAATTCTTGCTTGCTGGCAGTGGTGTTGCTGTCTAACCAAGAAATAGTCTCTTCAGGCTTCTTGGTGCCGGTGTCCTTGTCAGCTTGTTCCAATTTGTCACCAGCTTCAGAAA
+>chrI_176449_177020_5:0:1_5:0:0_0
+TGGTCAAATTAACTTCAATCGCTGCCGGTGTCGCCGCCATTGCTGCTGTTGCCTCGGCCGCAGGAACCACTACATTAACTCAATCTGACGAAAGAGTTAATTTGGTTGAATTAGGTGTTTATGATTCCGATATCAGAGCTCATTTGGCTGAATACTACTCTTTCTAAGCTGCTCACCCAACTGAAACTTATCCAGTTGAA
+>chrM_7124_7740_3:0:0_7:0:0_0
+TATAAAATTATATCTAATAAAAATTATATATATGGAGTTTTGTTCGTTAATGAACTTAATCTCAAACTTAGCAGCACGAACTAAAGACAACAATGTAACGCCTGTAATATAATAATTATAATAATTATTATACTATTCAAAATATGGTAAGGTTAGTCGTGGATTATCGAATTAAATAACATGCTCCACTGCTTAAGTGT
+>chrVIII_22151_22729_4:0:0_5:0:0_4
+CCGCTAACTCAGGTGGATGTTAGCTTTAACGTCAACCTAGAGAAGTCAAACTTATTCGAGGAATCCCAAAACCCGTAGTTTAACAAACATTTTTCATTAGAAATATAACCATAATTATTAAACAATTCATCCTGTGCACTCAATGTGGTAGTCTGCGACATGAAACAAAGTTCATTTTGTTCATTCATCTCCCATCTTAC
+>chrVIII_133554_134047_5:0:0_5:0:0_5
+ATTATGAATATTGAGTGAATGAATTAATGATTGTTGCGATTTCCTAGTTGGTGAAGGCTATGATATCAGCTATGCAGAATATACTAGTAGTTATCCACCAGAACATAAGAATCCTCAAAATGTAATTAAAAATCCACTATCGTCTATCAACCAATAATTATACTATCAATATATTATGATATACGGTTATAGATGATGAA
+>chrVIII_272363_272823_5:0:0_6:0:0_2
+GTAAACACCTAGCTTTTACGTCCCCTCCACAGTGAACTCAGAGCTTCCACCACCGCGATCTGTGAATGAGTAGGACCTCCGCTGTATTTCTAATGCAACGGCCTCGTCCTTGTCAGTCTGCGCAGCATATGTTTGTAACGGAAATGTGTCAAATATCCGTTTTACTGGCATGGTAACACTGAATGAACTTACCCTTGTGC
+>chrVIII_311844_312317_4:0:0_2:2:0_8
+GTCTGTCGTTGGATAACGGCGAAATCTTCCTTTGTCGTTCTTATATGGAAGTGAAGAGCTTGAGGATAACTTTTAGCAATTCTGATTAAGATATGACGAACCATATTGGCCTCCTTATGTGATAGAGAGGTTACTAGTTGACGAATGAAAGTAATCCAGTACCAAACGGGTATTTCGCCTCTAAAGGAGTCAAATGCGTT
+>chrVIII_342849_343228_3:0:0_3:0:0_1
+CATATCTGCTTGTTACATTTCTACGGGCGACTTAGAGAAGGTTATAGAGTTCACTACAAAGGCACTTGAGATAAAACCTGACCAATCTAAAGGCTTGCTGAGACGTGCATCTGCCAACGAGTCACTGGGCAACTTCACTGATGCTATGTTTGATCTATCTGTTTTGTCATTGAATGGTGCCTTTGATGGAGCCTCCATTG
+>chrVIII_385961_386445_6:1:0_2:0:0_7
+CCGGTTATCGTTTGACTTCTAGTTCTGGTTTTGTTTCATCTACTGCACCTTTCTCTTCCCAACTTTCTTCATCTTCATCTTCTGAAACATCATCCACCTCATTTTCAACATCATCATCATCTGCCCCTCTTTCCTTAACTTCTTCTTCTTCTTCTTCTTCTTCTTTCGCCACTATTATTCCCTTGGCACCATCGCGCTCA
+>chrVIII_455213_455717_8:0:0_5:0:0_3
+ACGGTGGCGGTACGGTATATTCTGCGTAAGCAATCTGCGGACGGCCGGATTATTAATCAATGTTAGAAAAAAAAAGATAGCAGAAGTGAAGATTTCTTATTTTAACAGCGATAAGGTATATACCTGAGGGAAACTAAATCTTAAGCGGCAGAATATGTGTTTTTTCTATACAAGTACATTCCTTTTTACGTTAAGTATGT
+>chrVIII_456483_456967_3:0:0_7:0:0_6
+CCCTTCTTCAACAAAACAAACAAATAAAGCGAGAACAAAGGGAACCACGAATTAAGATAATTAAACAAACAATAGATAGGAAAAGGAGATCTACGAGTAAGCGTAAGAATGATGGATATCAGCCCTACCTGTTATGGGTACATCGACGACGAGCAAGATCTAGCCCTTGTTTTCCAGGGCGTATTCAATGGAAATTTGAG
+>chrVIII_495976_496487_3:0:0_4:1:0_0
+AAAGAGAGTCTACATCTTCACATAAGAAAGTGAAATTCGTTGAAGAAACAACCGTGGATAATGGCGAAGAATTGATTGTCCAAAAAGCTGTAAGCCAAACTAAGGAAGAAGAGAAGCCAATGGAGGACAGTGAAGATGAAGAACAGGAGGAGTTTGACATTCCCGCTATCGAATTAAGTGATGACGAAGAGGAGGAGGAA
+>chrVII_48887_49401_7:0:0_6:0:0_6
+CTTCATCTTTTAAGTTGGGGAATCCTGTGGACTTTGCTCTAGATGATAACTACGATACGTTTTGGCAGAGCTATGGAGGGCAACCACACCAATATGACATTATGTTTAGTACGAGAATGGACATCTGTGTGATGGCAATATTCTTTTCGATGATTGCGGACGAGTCCTATGCTCCAAGCTTAGTGAAAGTTAACGCGGGG
+>chrVII_79245_79829_5:0:0_0:0:0_10
+CTTTACTACAGTGGGTAAAACTATACAATTTACTAAACACGGAGTTTTCCTCGAAGTGGGACGATGATTTACTTTCTATATTCAATGAATCCCTATTCGAGACACTATTTAACGATAACGTTCAAGCGTTACTGATATCAAGTGCCAACAGCAAAGATCATCAATATCACTCCAATCAGCAATATAAGGACGCGATTGTT
+>chrVII_85765_86253_2:0:0_4:0:0_1
+AAATAAGATCCAACGAGTCTACTCAAAGACTGCTGATTTCTGATTATTTTGGTCTTTATTTCTTTAGCACGATTTTCATATTTCAAAGTATTCAATGTCTCATCATAATGTGAACTGCTGGGCGATATGCAAACAATCATGACTGTTTAGCAATTGCCACCCAGTGCAAATTTCAACAGCCTAGTTAACTTGGAATCCCT
+>chrVII_131596_132048_5:0:0_4:0:0_8
+GGTGTCTAAAAGATTTCCGTTTTTGCAAGATATATCACAATTAGTTCGTGAAGAAACATTGGAAAAACCTCAATTATCTGAAATTGCTTTCGTTTTATTGAATACCTTCACGATTTACGAAGACAATAGGTCTAAAAGTTTGGTAACTTCAATATTGCTTGACATCTTAAATCTAGAGCGATGTCTCCTAGAAAACTTTA
+>chrVII_166337_166856_4:0:0_6:0:0_c
+AAGAAGAAGAGTTCTTGTAGGCCAGGTTTAAGAATGGCAAGAGAGAAAAAAAGCATGATCACAAGAAAACTGATTTCAGAATTGTAATATCGGACGGCAATACTAGTGTAATCTGAACCACAAGGTTAGTCTAAGCTGGGTAAACCACCTGGCGAAAGACGAAAAAAAATAAGGAATCTGGATGATTATAACCTTTTTTA
+>chrVII_258548_259029_4:0:0_4:0:0_b
+CCGTTCCAACAGTGCCAATGTTTCATCCCCAGAAAGTGAAAAGAATAAACGTCAAAGTAAATCATCGGGTAAAAGTAACACCTCAAACGATGCTTCTAACCAAAAAGCAACCAAGAAAAAAAGAAATCCAACCGAAGTAAATGATTCTGAGAATAATTCTTCGGAAGAAGACAAGAAGAAGGGTCAAAATGTCACATCAG
+>chrVII_461541_461988_0:0:0_4:0:0_9
+TTGCCCGTACATATTAGGATTGGAAACGTACAATGTACTGAATTTCGTCAAGTACAATAAATTTGACCTGAAAACATTGCATAGGGTTTCATAATCTTTTTCACCCCGCGTATTTAGTTGCACAGTTAAAGTCAGTGCACCAAAGTACTTGACATTCGCATAGTACTTGTCATCAGATAAAAGCTCCTTAGCTAGGTGGA
+>chrVII_463361_463814_7:1:0_2:0:0_e
+CATTGAACGACATAACCTATAGATCTAACCAATTTAGTTCTAGTGAACTGTGAAACATTGGAGTCTGGCATAATGACTGTGTTTAAAAAGCTTATAAAATGCATCAAATATGGAGTCAACTCCTCACGGCATGTCTCACATAATGTTGAAACAGTCTTGATAACCATACCTTCAAGTTTATCGTTCGAAATTTTTTCTTG
+>chrVII_530414_530972_2:0:0_5:0:0_d
+TACATGTTTTGTGTTCAGCCTAAAAAAACGGATTTCATTGACTCTGACGGTAAAATTGTCACAGCTTATCGTAGTAACAATTTCACCAAAATATGGTATTTCTTGCTGGGTAAAAAAATTGGTGAAACAGAAAGATTCAGCTCAGATTCCCCCATCGGCAGCAATAATATTGAGAATTTTGGTGATATCGATCCAGAAGA
+>chrVII_542196_542637_2:0:0_4:0:0_3
+TTCGCCAACATGGTTTTACCACATCCTGGTGGCCCATATAGCAAGACACCGCTAGGTGCTTGAAGTAAAGGGCTATTAGAATATACTTCTGGGATCATCAAGGGATATATGACACTTACATGTAGATCTGAAATAAGCGGGTCAAAGCCACCAATATCCTGGAATGTAATATTAATTTCATCTGGCGTAACGATAGAAGA
+>chrVII_681272_681783_6:0:0_2:0:0_11
+TGACGGACGAATTCATGGTAGGTGAAGAAGGTGCTTTAGCAGACTGATCGGCAGCAACAGTTTTAACATTTTGGTTATTGACCATCACCATAGGTACAACGGGAGCGTTCGCTGTAATTGAATTACCTGCAGATGTACTTCTCATCGCTGTGACATTAACACTTGAACTTGAAGTTCTTGATAAAGGTTGCATTTGTAAA
+>chrVII_892310_892899_5:0:0_6:0:0_5
+ACGATCTCAGCTTAGTTATAGCTTACTGCCGTCCATACCTGAGTATTTGGTTGATGACGTGGATCATATTAAATATTTCTGCTTCATTCTACCCAATGGTTTTGCACAACGAATTTTACAGGTACGGCTACATAATGCCAATCCATAATGCCGTGGATAACTCTAAAGTGCTTTTTTTGAATTTAACCAAAAGAAAAATG
+>chrVII_902032_902576_3:0:0_3:0:0_4
+GATGATCCTCAGATGCAGATACCATAAAATCTGAATCTGGGACAAATCTGACACAAGTCACTTCAGCTTCGTGGCCTTACAAAGTTGCATAAACACCTTTATTATTTGGTTCAATGGGGTCCCATAATGCAATAGTTTTACCTGGGCCAAATTCGACGATTTTTTTAACTTTGTGTATATCGCTAACCTGAGTTTGCTTG
+>chrVII_922150_922627_3:0:0_1:0:0_a
+TATAAGTAAAGTAGCGTTTTCTTGCTTCAGCTATTTGTTGTTTTATTTTTGATTTTGTATGTACATGAAATGAGTTTCTACATAATGAATATTTTTTTTAGTAAGGGTGCTCCAATCATTTTTTTTTCTTCCCCTTGCCCTTTGCAGTTGCAGCTGCATCCTTCTTCATCTTCTTAGGAGCACCTTTACCACGACGTTTC
+>chrVII_971124_971582_6:0:1_1:1:0_f
+CCAGCCACTGTTTCTAACAACGTTCCAGGTACTGAATACTCACTTGGTGTTGATACCTGTTTGAACGCATTAGTCAATTACCCTGATGTCATCAAACAGAGTGCTTCTGCGACAAGAAGAAGAGTCTTCGTCTGTGAAGTCCAAGGTGGTCACTCTGGTTACATCGCTTCTTTCACTGGTTTAATCACTGGTGCTGTTTC
+>chrVII_1003618_1004194_4:0:0_3:0:0_7
+ATGTTGTTTTATCGAACAAGATTTATGCTGCTATTGTTTCTCCTTTCTTTTTTTCGCTTCTTCTTGCAGAAGGAACACGCAGATCTTAAACTGTTTCTGAGAAATATCCCTTCTGGCATTGTGATACGACATTAAAAAGGAATAAATATAATTGTGGCGGCTAATTTTCTTCATTCAGTAACTCAAATTGGTCTTTCAGT
+>chrVII_1051445_1051916_1:0:0_3:0:0_2
+CAAGGATATTTTCTCTGTCGTTGTTGTTTTCGTACAAATATAAACAACCGGGTAACAGTCAAAGAAAAAAAAAAAAAGAAAAGGAAAAAAAAAAAATATGAAAAATTTTGTTCTGAACGAAGCGATGAGATGAGTACTCAATAGTAACATATAGGCAGCTTACACCATTAAAGAAAGAAGCAGAATGGGTTTGGCAGCTA
+>chrVII_1066297_1066809_8:0:0_8:1:0_0
+AAGACAGATGCTTTCTTGACTTATATTTTTATAATTATTGGAATTGCCGCTTTAACTAGTAAAGAATGAGATGGTGGCCGTATTCTGCTGCCCTACATTTAATATATATTCTAAAAGGTCTGTTAATTTTGTACAACTCCTTGGCGAGAAGGAGAGGTGGCAAAATATTTGTGAAAATGGGACCCAATTTAATCAAATAG
+>chrVI_18396_18897_3:0:0_4:0:0_0
+GCCTAAATTATACTTCATGCATTGGTTATAAAAAATCATGTTTTTTTACATCGGCTCTAAAAAGCGCAGAAGACTTAATCATAGTTTCATTGTACGTGTTATGCTCACTAGAGTATGTAAGGCCCTTTTCCGTTCCCACAACTTGAAATATTTATCCTGGGGGGGCGGCTGTAAAACGGTAAAATAATTCTCAAATAGGT
+>chrVI_38233_38753_3:0:0_4:0:0_2
+TGTTAATACCGGTTTGCAGAACGTTAGAAAAGTTAGGACAAAAAAATGGAAAAAGTACTGGCAGTACAAGGCAGGTATTCCTATCGGTTTGAAACGGTCTCAATTGGATGAATTCAAAAATAAATATATGAAAGATGTGTTGGCGCAAACGAGTGTTCCTACAAATTTTCACGAAATAACGAATACGGATGAAACAATAA
+>chrVI_118934_119464_5:0:0_3:0:0_1
+TTTTCAAGTTATCAAGCGTTATGTTTTGAAACATCTGTTCCGTTTTCAGTTTTTCAAAAAGATCGATATTCTCTTGAGAATTAGGAAGTTCTACGCTCAACCTCCCGTGGGCAGAAGAAAAACAAAAGCTACTACAATTGTGTTAGAATACAGTTCTAATATTATCAAATAAGTAGTATTCATGTTACTAGTATATTATC
+>chrVI_184780_185293_1:1:0_8:0:0_3
+AATTTGGCCGCCTATCCAGCAGTGGAGTTTCCTTCTGACAGTGTTAAACGTTTTACCACAACTGAAACATTCTTTAGAACTCTCGTCCTTGATCCAATATTCCTTTGAGAGGACACCATTGTTACTGGTCATGTCCTTCTTGCGGTTGTTATAAAATGCGAACAGGAAACTCTTGGACAGGTATGCGGTCAAGGAAGAAG
+>chrV_124419_124957_4:0:0_4:0:0_5
+TTAGTGTCATACTACATCAAGTTCATCCGCTACGACCTGAACATCGAGTTGGACCCGAAGACTTTCAATCTCACGAAATTCTTGAATTCTTTGGCAATCTTCAAAACTTGTAATAATAAAAACATAGATTTCCATTCTTTTCGATGTGTTAACCAACTATGGACACAACTCTGTACAGTGAACCTTTCCCTTGGTATGGT
+>chrV_151218_151704_3:0:0_8:0:0_2
+TGAATTTACTTCATTTGTTAAGGTTAACAATTTAAGGTGTTGAATCTTTCAAATTCTGTTCTCGCCATTCCATGACAGAAACATTACGAAGTGCTAGGAGGTATATTATTAATAAGATAGTTTTTAGTTTATAATATTTGTCAACTCTAGTTGTTTACGCATAGAAAATAAGTACGTTGTAATCAATATCATGAATATTT
+>chrV_234738_235208_3:0:0_5:0:0_3
+GAGTTAACGGGCACAGCGTCAAAAAATCCGCCACCACAGTTGATCGCGCCGAAAACGATGGAGTTGCGATGAGTAAAATGAAGGGCATATATAAACAAGAGTAGACAGAGACACATTTTTCAATAACATATATATAGATTTAATTGGAAAGACAGTTATATTCTAACGTCCAAAACTTAACAAGTAAATCAAGTTGCAAT
+>chrV_278567_279041_6:0:0_2:0:0_6
+GCGATGCATTCAATTTTATTCGGTTAGGCATGCAAGACATCAGTGTCGCCGGTGCAAGTGAAACGAGTTTGCATCCGTTAAGTTTAGCAGGTTTCATCAGAGCAAAGTCGATTACTACAAACGGGATCTCTAGACGCTTTGATACACAACGTTCTGGATTCGTACTTGGTGAAGGATGCGGAATGATTGTCATGGAATCG
+>chrV_436297_436806_7:0:0_5:0:0_7
+TTCGCAGGCAAATATGCATTTCTTATTCCAACACTAATGATTCCTGCCATAGATTGATGATTTTCGTAAAACTAGCATGTAGAACAAAAATACTCAAATGAAATTCAAGATCAAAAAAGACTCTCCTGCGTTCAGCGGTCTTTCGAGCGAATAGTAGGATTTCAGCGCCTCGCTTGATAGACGATAGTTGGTTTTTATTC
+>chrV_479347_479873_3:0:0_3:0:0_4
+ACCGTAGTTGTAGTAGTAAAGCTTTTATAAGTGTTGAAGAATGTTTCTGTGAAAATCTCATTGTCGATAGTTAGTTTAACGAATGCATAATCTAGTAGTCCTATGTTATCATGGGAAAGCCCTCTGGTAGAATGACCCCTTTGTCTTTGATGATAGTAATAATTCTCAAGGTCTTTAGTGTCTACCAATTTTGAAAAGAT
+>chrV_482784_483296_3:1:0_7:0:0_0
+GCTTGAACTAGCACTGGCCGTTGAAGATTTCCTGTTCTTAGACCAGAGAAGACCTTTCATTAGACTCCTGCTTCGTTAATTGTTTTTTTTGTGTCTATCCAGAAAAGGCACGATGACCGTGTGTTCTATTAAACTGAAACGTTTGCTTGTTTGTTCTGTTGGAAAAAATGGGACTGATCTGCAGTCTCCTAACCAAAGAG
+>chrV_498912_499362_2:1:0_5:0:0_8
+CGTAAGAAGGGCATACGCTAAGGAATATTGATATATGTTTTGATATATGGACGTGAAATGACTAATGAAGTCGTAGAGAGTTTGGGAACTGTTTCGAGGCACTGTTTCACTTCTAACATTCATTTTCATCCCCTTTGTAATAGCGTTTTCCATTTATCCAGTTTGCCTTTCCGATTTTCAAACGTACAGTGATGAAATGC
+>chrV_573344_573800_1:0:0_1:0:0_1
+GCGGAAGACGTAGTGGCAGGTGAGGCGGCGAGTTCAGATCATCATCAAAAAATTTCCAGAGTAACGCGAAAAAGGCCCCGAGAGCCCAAGAGTACAAACGATATCCTCGTCGCAGGCCAGAAACTCTTTGGCAGCTCCTTTGAATTCAGGGACTTGCATCAGTTGCGCTTATGTCATGAAATATACATGGCAGACACACC
+>chrXIII_88166_88586_6:0:0_6:0:0_a
+TTAAATTTGGCACAAAAACATTGCTAAATTTTGGATTATTGATTCTCAATTGGGTTAGGTTCCTACCAGGAATCTTTGAAATCCTCAAATTTACGATATTTTTTAGTTCAATTGAATCAGGGCATACCTCTACGCACTTTTCAATAATATGTTTGTTAATAGCTCGTTTAATTATCAATTCTTTATAAGTGTCATAATCA
+>chrXIII_93863_94369_5:0:0_3:0:0_7
+TGTCGGAGATGATGAAGATGAGCAGTTAAGAAGGGCGCTGGAGGAATCTCAACTGATATATGAGACGCAAACGAATAGCTCTGCGAATCATGGTAAAAATACGAATGATGCGATAGATGAAGATGATGAATAGTTTCTCAGATCCATCAGACAATCAAGAGTGGAGGACGAAAGGAGAAGACATCTTAGAAATCAAACTA
+>chrXIII_147038_147473_4:0:0_1:0:0_6
+AAAAGGCATATAGACACATAGGCAAGTTATTACAGTTCAATAGAAACCGAAATCGGTAAGGTAAAAAATAACAACCATAAAAAGACAGTATTGGACAAAAGAGCAAGTTCTGTATGGTGCGTCACCTTCTTTTTTTTAGTAATAATTAATTATATTAATAATAAAGAGAAAACATATTAATAAATTGTGTACATGTCAAA
+>chrXIII_148415_148921_2:0:0_3:0:0_b
+ACAAACTGCTATAATAAACAAGGCCGAGATACATAGTTCCGCGGTTTTATCTGTATTTATTTTGATATTGGATCTTTGACACCTTTTTATCTTTCTTTCTTGCGCTTTGTTCCTTCTATTATTTTGGTGAACCTCCTTCGATAGAAAAAAGTGAAACATTATCTAAATTAAAGTAAAATACAACAACTGGCTGTAAAAAA
+>chrXIII_310709_311229_1:0:0_2:0:0_1
+TAAATGAGCTAAAGATAGAAAACAATGTAGAAGAAAAAACTGTTGGTTATGAATATGTGGCAGAATCCGAAGAAACAATTGATTTCATGCATATGCTGTCATCCGTACCACAAACATATCAATTCCTAAAATCAAACATCTACATAACGGAACGGGACCCATATAAAATAGGATGTGTACTAATGGACAACGGTTCCAAT
+>chrXIII_392912_393390_4:0:1_8:0:0_4
+AACTCAAGAGTCATACGCTAAGGTGAGAGAAGTATACGAGCAATTTCATAACACATTCCCGTTTTATTCACCTGCGTGGACTTTGCAACTAAAGGGTGAATTGGACAAGAGATGAATTTGAGACTGTTTAGAAGATTTTGGCTGAATGTCTTTCTGGCAAGTTGGAAAATAAATACCTATCTCTTTGGTCAACATATTTG
+>chrXIII_468755_469238_3:0:0_7:0:0_c
+TATGCCCAGTCACGCAGGCTACCAGTAAAAAAAGGCCATGAAGCTGGTGGGTTAACGTTCCTAACACTACTGTATATCTGCAAAAGCTTGGGTGTAAAATGTGTTTCCGCCTATGCATTTTCTATTGAAAATTTTAATATACCAAAAGAAGAAGTAGATACGCTAATGAATTTGTATACGGTAAAGCTTGATGAATTCGC
+>chrXIII_561181_561703_2:0:0_5:0:0_d
+ATCCTAGGAAATATACAGCAGTGACACCGGTCGGGATGTTATTGAAAGCGGGGGCACAAGAATTCAACCATGTGACTATTAAAGATAAAATGGTAATGAAGATAATTAAAACAAAAATCACAGCAATTGGTATGGCAACTCTCTTTGGCTCGGCATGAAATATATGATGGATTTCTGGCTTAATGCCGAATTTGTCAACA
+>chrXIII_584353_584902_9:0:0_3:1:0_5
+GCCTGCTCACAAGAAAGGCATCGTCTCTTAATGGTTTTTGAAAGCCAAACTTTACGTACATGGAAGCCTGAGCTTTTCTTAGCCATTCAAAGGACTTTGCAGTTCATAGCCTTTCCCTGCCTTCACGGTTTTCTTGAGGCAATTTCAAAATTCTTTCATCAAACTTGCGTCGTAATTCGTTGTCAGACATTTGCTTGCAA
+>chrXIII_793234_793743_3:0:0_5:0:0_8
+CATCAACAAGTTTATTCATCTACTTCCTCAATGAACAGCGAAGTGTAACACCTAACCTCGATAGAGTTGCAATTGCCAGTCTTGTAAAAGGGCCCTTTCTTCCCTACGTAATCAATTGTCCTCCTGGTCTTCGCGCGGTGCCCCTGGAATTAATTAATCCCCTTCAGCACGCAGCAACTGCAACTCCATGGAGCATCAAG
+>chrXIII_817055_817615_5:1:0_3:0:0_3
+ACTAGTTTGTTGATATCATTCAGCTGACTCATAGTGTTACTTTCTCCGACGACATTGGCGTCAAAACCAAAAGGGATTACTCTAAGATTATATTCTCTTTCCTTCATAATATACAGTTTAGAGGCGTTTTGATCTTTACCGACAATGCTTGCATCAATAGTGTAATTGATCGAAAGGTTGTCATCAGACATATCGTTAGT
+>chrXIII_826701_827229_7:0:0_8:0:0_2
+AGAGAGCAACTGGCAACGAGTTGGATACACCTTCTACACTGTTTCAAATGAGAAGGACCTCTTCATGGCCCTCGGCGTCCCACCGTGGTCCAAGACGGCCTCAGAAAAATCGTTACAATACAGATCGATCAAAAAGTTCTGGTTGCGGAAGTTCCAACACAGATAATGTATCTGATTAATTCCAATTGGAAAACTCCAAA
+>chrXIII_833253_833690_3:1:0_6:0:0_0
+GGAATTGATGTTTTCAGGAGTTTCAAACCGGGGATCGAAAGAACGAGAGCAGAAAATGCTGGAAAAGTTAACAATATCAATATCAAATAGCAAAAATGTATTATAAAGGAGCTTTTAAATAGAGGTAGATTATCAGCGGTAAGGGAATTCATTGATAGTTATGGTTTTGATAGAAAAATGACCAAAGATTTGAATATTTT
+>chrXIII_843242_843670_4:0:0_3:0:0_9
+TATATTCATATTGCGGATCCAACTTCTATGTTTCCGGAAAGCACTAATGTTGATATTGAGGTTATAAGTACAGATATCCTAAATGTTGCCTTGAAAAGATCATTTACCACATATTTACCAGATACGGTTTTTCCTATGTTACCTCAATCTATTTGTCACTTATCAGATTTGGGGAAACAAGGACAAAGGACGACAACTAT
+>chrXIII_875476_876017_4:1:0_2:0:0_e
+CGCTTTGGTTCTTATACGAAGGGAGCTTGAACATAACAGGGTATGTGCGCATATTGAAGGATCCTACTGGTGTCTTGTGGCATAATTTCCTGAAATATGACTCGAAGAAAGTCACGGGCTATGTTGGCTTCCGAAATCAGGGTGCCACATGCTATTTGAATTCGTTATTGCAATCTTACTTCTTTACAAAATACTTCAGA
+>chrXII_14440_14929_3:0:0_4:0:0_0
+CGATGTAACGCATCTCATCTCTTTTAAACATAAAAGTCATTTGTGTAATGTAGAGATTTACAAAGATTTTAAAAAAATAACAAAACTATCCAAAACTATCTATATTTGAATACTTCCTCCTATTTTTTTTTTTTTAACTATAATGAATGAATGCATGCCATATTGACTTACGTAACAAGGTGGCCTATTGGTAATATATT
+>chrXII_79515_79982_3:0:0_9:0:0_e
+ATGATCATGGAAGTAATGCATAACACCGTTATCGACATTATCTAAGTCCCACACATTGAGTGATTCTAGTGGGAAACTATCGTTGGAAAGGAACGGATGGAACAGAGCCATCCATGTATCATCTCCGGCAAATTTGACAGTCTTATTTGCCCAATGGAGCTGTTTAAGAAAGTTATCCTCTTCGATTACTGTTCCATCGA
+>chrXII_179129_179604_4:0:0_3:0:0_c
+TGAAGATTCAGGCGGGCCAATTGGGCCTGGACGATAATGACGTGCCGGGCCCATTGCCGGACACAGACAGCAAACCCTCATCACAATCACAAAATGACACAGCAATGTTTAAATTGTGCAACTTTGAAAGTCCTGTGCTCAAGGAGCTATCACGGCGAACGGTAAACAAGGAAATGGAGACGCAGAGAATTATGACAAAC
+>chrXII_219746_220211_0:0:0_2:0:0_f
+TATATTCGCCAGATAGACCTCTCATAATTAATTGGCATGCGACCTTGTTATTGATATGAATGCCATTATTGTTCAGTCTGTCGATAATGTTTGTGACTTTTGTTTCAAATGCATCTGCAGGTGTACTGCCATTATATTGCAAATTTGCCAGGGTCACAATGTCGTTTGCCTCTTGGGTATCAGATTGCATTTTTTCAATA
+>chrXII_224837_225269_7:1:0_1:0:1_7
+ATGATTAGCAGAGATATACAAATATTTTAGTAAGAATACCATAAAGTATCTTTGCTTTCACAAATAGGAACAAGCACATAAATACAGTATAATAGACATGGCTGATCAAGAAAACTCTCCACTACATACAGTTGGTTTCGATGCTAGATTTCCCCAACAAAACCAAACAAAGCATTGTTTGCAATCTTATGTGGATTATC
+>chrXII_329567_330050_4:0:0_5:0:0_3
+AAGAAGAAAAAAAATGAAGGACGAAAAGAAAAGGCTCGAAGAGCTTGCAAAGAAAAGGGAACTAACCGAGTCTGTCTCACCTCCAGTGTTTAAAAATGCATTTGCAAACATGTCAAGTAGCACAACGCCTATTATCGCCGCTTACGAAAAAACAAATCCAGCCATCACTCCAGCACCTAATGTAAAAGCCGCTCACCCCA
+>chrXII_343172_343673_10:0:0_4:1:0_9
+CAATTTTACCACACCGCTACGGAAAAGGTCGACAAGGGTAATAAATGATGATTCGATGCCCCTAACAGGCGAAGTACTAGAGGAGAGGACAGCAGATGATCTCTATGGGATACATATGGACGTAGACGAAGTCGACTATCTGAATACATTGAGCCACATCGAGGAAGAAAAGCAATACGATTATTCAGCGTTTTGTGAGC
+>chrXII_349489_350011_4:0:0_4:0:0_6
+AGAAAGAGTGAGGAAGATTTTGAGAACGAACTTTCAAATGAACACTTCTCGGCTGATCAAGAGGATGACAGTGAAATACAATCTTTAATTGAAAACATTGAGGATAATCCACCTGATGCAAGTGCTAGTTTGACACCGGAAAGATCGTTAGAAGAATCGCGTGAATTGTGGCATCAAAGTGACATTTCGACCGCCGAATT
+>chrXII_394208_394614_2:0:0_5:0:0_b
+CACTCCAATGAACAGTATCCGAAGGTTCGGCACTACATAGTTTCTTTTATTAAGACCAATAAATAAGCTTTTTTGTATGCACTTTTTATTCGCTCATGCATAATTGATATAGCTGACTGAATGTCAGTAGTAATATCTGCGAGAAAATATGACACTAATTCTTGAGGTTTGTTGATTTACGTAATATGGTCCTCGTATAG
+>chrXII_625955_626443_7:0:0_4:0:0_11
+TGTTGTTAATTCTATCATTTCTTTGATCACTGACTGGAAGCCCATTAGCGGCCCAGTCCGGTTTAGGAATATCTTCAGGGACATACCTTCTTGGGGTAAGTGGATATGAAGCCTTGACTTTACCAGAATATTTGAATTTTGGGACAGGAACATAAGCACCTTCCAAGCCGTCCTAAGCATTGTGCAAAGCTTTGTGAGCT
+>chrXII_662505_663100_5:0:0_6:0:0_1
+ACTGGACTGGAAGAGAATGGGTCACGAAAACGTCAATGCAAGGCAGTTAGCATTAAGAAGAGGCTATCCTGATCAGTTCAGAGAGCTCGTAGGTGAAGAAGTAAATGATTCCAACATGGATGCTTTAGCAGGCGGAAAGAAATTGAAAGTTGCAAGACCGCTTAGTGTACCTGGCTCACCAAGAGATTTGAGATCAAACA
+>chrXII_804157_804654_4:0:0_5:0:0_2
+GTCTTCTGCACCTCCAAATCCTGATCTTGCATCTTCTGCGGCCCCTCCTATTCCCATTGTACCATCATCTGCAGCACCACCGCTTCCATTATCAGGTTCCTCTGCTCCAAAGGTACCGCAAAATAGACCGCATATGCCTTCAGTAAGGCCAGCACACAGAAGCCACCAAAGAAAAAGCTCTAATATTTCTCTTCCTAGTG
+>chrXII_807598_808081_4:0:0_5:0:0_8
+AGCCAGTTTGGAACTGACGCAGTTCCGATAAGGATCGATGAGAAAGAAGGAACGTGGGATAGAATTCAAGATGATAATTCTTCTAATTTAAACTACCAAATTAACAACATTAATGACCCAGCTTCGAGTGGTAAATATACCCAGAGTATTGACTGTAACCATATAGCGGAGTCAAAATTTTGACAAAAAAATGGAAACAT
+>chrXII_964131_964649_5:0:0_5:0:0_a
+TCAGCGCATTTTACCCAATTTTCAAGGCTATGCAAGACGAGAACCTGGTATTAAATTTGCATGGGGAAAAACCTTCTGTCCAATATGGAGACAAAGAACCTATTCATGTATTGAATGCAGAGGAAGCCTTTTTGCCAGCCTAGAAACAATTGCATAATGATTTCCCAAACCTGAAAATAATTCTGGAACACTGCACTAGC
+>chrXII_1019223_1019749_5:0:0_4:0:0_4
+CAGTTATGGTTACATTATTAAGGAATACAGAAGAGACTGCATGTGTACATAGGCATATCTATGGCGGAATTGAAAATGAATGTTGGTGGTCCAATGCAGTCCATATTTTTGAATTCTTCATCCATCGAAAAGGCGTAATTTATTTCTAAAGGAAGTTTAAGTTCTACCATAATGCTTTCACTGGTCTCCTCGAGCACCAC
+>chrXII_1023125_1023595_6:0:0_7:0:0_d
+TGGTTTCGATAACATTTTAGATTATGCATACAACAAAATCGGTTCACCACAGGCAGAAAGTTCTGCATACACGACCTACATGATGAGTTTAAAACATAAAAAGGCCAACGTGTTACATTTACTCTATGCAGTTATTAGTTTCCAGGTGTGTATGTTATTTTTCCTGATATGGTACTACTACATAAAGGGAAGGTTTATGA
+>chrXII_1036541_1037023_5:0:0_5:0:0_10
+CTATTTCTTACAGTACCAACAGAATACATACGGATTCTTCTCCTTTAACGCTCTTAAGCTCGACGACAAACTTCGACCCTGTTCACTCAACAAACGTTATTACAGATGATCAACTTAAGTGCTTGCCAAAAAGCCTGGGCGACGTATATTTTTCAAGCAGCGATATTGCTGAGCTGTTTCAAGAATTTGCGACAAAATCT
+>chrXII_1065644_1066121_6:0:0_4:0:0_5
+ATTGAAAACGAAAGTACGTACCGACTCCTTTATTTTTGCAGGCCGGAAATCAAGCGATGAATGAGACATCCTTCTGTTTTCTATGTTGTGCTTGAAGGGTACAGACAGTCGCTTATCTTAGTGAGATTTTGTTTGCTTTTGCTGCACCTGCATAGCGCAGATTGTGCATCTTCTCAATAGCATAAATATTCCATTCTTAG
+>chrXIV_19790_20275_3:0:0_6:0:0_0
+TGAGCAGAGAGCATAAAAATCTGCCCCGGTGTAATTAAATGGACATAGCTTTGGCAACTCAATAAGCTTTACGTCGTTGTCGAGCACGAATTTGCGAGTCAGAGCCTCTAAAATATTCAATTGTTTGGTATCCGTATCCGGAATGCCTAAATATAACAATTTATCGAATCGTCCTGGTCTTAGTAGTGCTTCGTCCCATC
+>chrXIV_22782_23237_1:0:0_5:0:0_2
+CTATGTGGTGTAAGGAAGTGTAGCAATTGGCTACATGATATATAAAGTTCTTTTATCTCTTTCTTAGTAAAACACTTCTTTCGAGAACTTCTTTCGCCTCATTTATCTTGGCCGCCATGTAGGGACTCCCTGCTCTGTCTGGGTGGTTACGAACCATAGCCTTCCTGTGCTTTTTTTTCAGTAATTTTTCATCCAAGTGA
+>chrXIV_27823_28329_3:0:0_3:0:0_5
+GTTGACAAGTCTGTTTCCCAGGTGTTTGACCACATGTTAGTATATTTGGACTGCATACATAACATTGACACGGATTCATCAAATACCTAGGTGGTTTCTCGCGCTAACAATAGTTCCGACATTGGCAGTGGCACTATACACTTATTATAAGGTTATTGCTAGAGGTCCCGGTTCTCCTCTAGATTTCCCTGATTTGTTAG
+>chrXIV_118854_119338_2:0:0_2:0:0_8
+TACATGTATATCTATATCTAAATTTATATATAGACAAACAGCATTAATTAACTATAACAAAGTTTCTAGTAACACTAACGGTAGTAGTAGATTTCTCTTTTTTGTCCTCGATGTTAAAAAACGAAAGAAGAATGAAAAAAAAAAAAAAAAACAGAAGAGTAATAGCTAGTGCTTTAGAGCTTTCCACATTTTGACCGCAC
+>chrXIV_201372_201956_5:0:0_7:0:0_6
+CAGTCTCATTGATCAATGATCCAAGACACCCATATGGTAAATTAATTAAGATCGATCGTTTAGGAAACGTCCTTGGCGGAGATGCCGTGATTTACTTAAATGTTGACCATGAAACACTATCTAAATTTGTTGTTAAGAGATTACAAAATCACAAATCTGTCTTTTTTGGATCTCACACTCCAAAGTTCATGGACAAGCAA
+>chrXIV_340528_341049_5:0:0_2:0:0_4
+ATATTATTAATTAGAAGTACAAGAAGATAAGATCAGAATGGCTTATCGTTTATATATAACTAATTAACGTAAACACAGTGAGCCATATGGCTGTAACACTTGACATTTCGAGAAATCACATAATAAGCGTTAAATATAAGAGACCCTTCTCTTTCCCTAAAAAAATATAAAAAAGTACAGGTTGTCTATTTATCTAATGG
+>chrXIV_369689_370164_2:0:0_3:0:0_1
+TGAAGGTTTCCCCAGAGGAAGTGCAACTAATTCGAATAAATATCGAGTAGGAGCTCCTTTATACTTTTTTGGTACGGAAGACTGGTTACAATTAAAATACAGAGATAATGCCAAGAAAGGCTAATTTGCTAAAATCTTTGGCAATAGGACGAGTACGCACTTCTTTCAATAAGTATAATTTGTTTAATTTGTACCAAAAG
+>chrXIV_444006_444414_1:0:0_5:0:0_7
+AATGCTATTGATAATGGTTAACATATGTGTTATTTGACTTTGTATATACAAACAGAAGAGACACCAACACACTAAAGACTAGACACATAACTGACCAATGTCCTCTGTCCAATCCAAGATCTTCTCCCAAGCTCCAAGTGAGTTGGAATTACAAGTCGCCAATACCTTCATCGATCTAGAAAGCTCCTCTCCAGAACTAA
+>chrXIV_500006_500526_4:0:1_3:0:0_a
+TTCTTTCCTTTACCAAAAAATATGCAATTAGCATCAATAGAAGAAAACCCAAAAGCAATTTGAGAAAACGTAAAGTGGCTCTTTATTTCAATGAGCACTAGCAACGTTTCCCCTTGACAGCATTCCCTAGAGAGCCAGTCAATTCATCATTGGAAGTGAGGCACATCCAATGACAAAGAACCTCAGTCTTTACATAATAC
+>chrXIV_611746_612236_5:0:0_3:0:0_b
+CGGTTCTTTAATGACAAGTTTACTCCCAATCCTTATTCTTGGTAATCTTGCTGAAGTAATTTTGTAATCTAATAATACGAAAAAAGTTTTGCTCATAAATACTAAATATGATAGAGATGTTTTTGGTTTAGACGGTTTACACTACGTTCAAATGATCATAGATTCTATGAGTAGGGCAATAGCAGGCTATAGGCAATCTA
+>chrXIV_696249_696837_4:0:0_5:0:0_9
+AATCTAAGAGAAACTTCACCAGAAGAATCGGTGATATTCTTGTAAATGCTGCTACCGGTTCAGGTAAAACTTTGGCTTACTCCATTCCTATTGTTCAAACCCTCTTCAAGAGACAAAATAACAGACTGCGTTGTATAATCATCGTCCCCACAAAACTATTGATAAACCAAGTTTATACTACGTTGACAAATCTACCTCAA
+>chrXIV_727664_728211_4:0:0_7:0:0_c
+GACAATCAAATATTGGGATCATAAACACACATAATCGCCATATGCGTTAATTCGGGTTTCAATCACTTCGTTTGTCTATGGTATCGCAGCCTAGTGAATATTTAATTGTTTCAATAAAAAAGGCTTAAAATCCCCATGAAAATCACAAGAGGAATCTTTCAACAAGAACAATAGTATACAATCCATGAATGAAGGAGTTC
+>chrXIV_758471_759074_4:0:0_2:0:0_3
+GAAGAATAGGAAGGCATTTGAGTTACCCGTGGATCGATTGTACGTTTTGAAACAGAAGTCAATAAAGTTCCATTTAATTTTGTCCCCGAAATAGATAAAGATGAAGAAAATAAAGTCGAAGTCGACGTCGAAGCAGTTTGAGATAATAATGTGGTGACTTTACGCATTGTTGATGCACTTGGCATGACTGAGGCGACGCC
+>chrXI_27284_27774_3:1:0_7:0:0_3
+ATGCATCTGAATCCCTAAAAAAAATGCTTGCAAAAATGGTTGAACATTTTGGGACAACGAAGTTTTCTTGCGAAGATCGCTAAGATGATTGAAGCTTAATTAAACTACAAGTTATCATAAGACCTGAAAAAGAGGAGTATATTTTTAATTTCGATGGCACTTCACCCCAAGTTTATGGTAATTTAAATGCACCAGATGCT
+>chrXI_226703_227185_4:0:0_7:0:0_4
+GTGAATGGGAACAATGACGATGATGCTGATGCCAACAACATTTTTAAACAGCAAGGTGTTACTATCAAGAACGACACTGAAGATGATTCGATAAATAAGGCCTCTAATGACCGGGGATTGGAGGACGAGAGCGGTCCTACTCATGGTAATGACAGCGGTAACCACCGTCACAACGAGGAGTATGACGTCCATAGCCAAAT
+>chrXI_302795_303272_10:0:0_6:0:0_7
+TACTGATAGTCTATCTTAATCATTATTTCTTGTTTCAATCTGGAATTTGATTTTCGCGGCATATCGTTACCTCCTTATGCATATTATAAATGGGTTATATACGTATACAGCAACTTTCATAAATTATAGATATGTAATTGCCTCCACATCGAATCACCTAGGATAAAGAACCGACTTCCTGCCGCGAATTTAGAGTTTTC
+>chrXI_314675_315205_3:0:0_6:1:0_0
+ACCTTTGCCAACTTGTATTTTTCGATGATACTATAAAGTTCGGAAAGAAGAAGGAATTGTGTCAATATCACTGGGAGCCAAAAGCATTTGACCTCAGGCGTCATTGAAGCGTCATTAAGTATTATAAATTCGTATATAAGGGGAGCAACATAAGTGGTATTTTTTTTATATAATGGTGCTCCTTCTAAAAAATTCCTTAT
+>chrXI_360709_361124_4:0:0_3:0:0_1
+CATGGCTTGTCTTTTTACTCGATTCCAACTTTTTTTCAAGCTTATCAAATTCCTTTAATGCTATTTCTTGCTCAGGATCCATGATCTGAATCACTTCTTTCACTTCATCCACATAGTGCTTCAACATGGACTCAATACCGTACTTCAAAGTCACTTCACAAGAAGAGGATGAGGTACATGCACCTTGAAATCTTAAATAA
+>chrXI_389403_389898_4:0:0_6:0:0_8
+ATTGAGGTGTGAACTCACAATGAGATGCTACATTGACTATCAAAACCACTTTGTTACGCAGGGAGTTGCAGGGGAATGGATTTCCGTTTTCATCTATTGGTGAAAAAGAATAAAATTCTTGCATCGTTAGTTATAAATATTGTGTTTCTCCGCTTATATTCCTTATACGGGTTCACAATCAGAGAACCTCGCCGTGCACC
+>chrXI_436806_437329_3:0:0_2:0:0_6
+CGATGAGGCTCTATCCAGCTGCTTATCTAAATCAACTTTAACGATGGATGATCTTATGACAGGGGGATCTTTCTTTAAAGTTCTTAGAATTACAGACTGTACCGCAGCTGATGAATCAAACAGCATTAAAAAGTGATATGCTCGAAAATGTTTTTCCTGGTCTTTCTTCATTATTTAAGGAAGATACCTTATGCCCATGG
+>chrXI_445827_446391_1:0:0_7:0:0_9
+ATATCATATCCAACATATACACTATTGTTTTGCTGGGTTCTGCTTATCGTTTTCAATCATCTTCTTTTTTGATTTTATTTTCTCAAATGCGGGTATGAAAAATTTGTCGGTAAATTGTTGACCAGGTAAAATAGGTGCTATTTGCAATATGCTTCGTATTTGCTTCTCAGGGTCCTCGTCGACAGGGAACTTATTAAAAA
+>chrXI_470772_471261_1:0:0_4:0:0_5
+TTTGGAGTTTAAACGTTGTTGCATTTTTGTATATTTTCGTATTTTTTTATTTATTTGAACCTGTATTTGTCGTTTAAATACTATTTATATACACATTGTTGATCCAATTCCTACAAAGTTATATTGTTTTAAAAAGATTTCACAATTCTTTGAATCGGAAATGACGAGTAACAGCTAACTTACATTTTAGGTATTAAGTT
+>chrXI_609225_609808_8:1:0_2:0:0_2
+GAATGTAGAAGCCTTTCTGTCCACTGCGTTGAGGCAATTGCCGTTCATATCGAGCTTTGCATTTCTAGATAGGGAAACATCGTCTAATTGAGCAATCAATTGTTCGACTTGGCGGTTCGTAGCAGTGTATGGTGTTTCCACGTTTTCTGAAGAAGTTATTGAAAGACGTTTCTCATTTAACCCATCAAGACTTAAATCTT
+>chrXI_628737_629238_4:0:0_5:1:0_a
+CATCGAACTCTATTATTGGAGATTTATGCGATGACTACGATAAATTAAGCCTTTCTGAACTATTAGAATTATTCAATGAAGGCGAAGAATTACCAGAAATTTTGGGCTGTTGGGGAACATTGTGGTTTGCCACAATTTGCGAAAAGAATACGCATTCGATTAGTAGTGAAGATAAATTTCAAGAAATCGGTATACAAGAT
+>chrXVI_47666_48026_6:0:0_6:1:0_f
+CTAGACGACCACATTCCATTGGTTGTTATGCAAACGGGTTCCGGTACCCAGTCTAACATGAATGGTAATGAAGTTCTTTCCAATCGTGCCATTGAGATCCTAGGAGGCAAGCTTGGATCTAAACAAGTCCATCCAAACAATCATTGCAACCAATCTCAATCATCCAATGATACTTTCCCCACTGTCATGCATATCGCTGC
+>chrXVI_174529_175059_1:1:0_2:0:0_2
+TCATCACTGTTGGTGCACACTTCAAGCAAGCTAACAACTTTTTGTGGCCATTCAAGTTGTCCAACCCATCTGGTGGTTGGGGTGTCCCAAGAAAGTTCAAGCATTTCCTCCAAGGTGGTTCTTTCGGTAACCGTGAAGAATTCATCAATAAATTGGTTAAGGCTATGAACTAACATTATTCCGTGTGGCAATAATCTCAA
+>chrXVI_216257_216697_2:0:0_4:0:0_8
+ATTCCAGTTGCGATCATTTCATCTCGAGGAGTGATGACTAGAGAACATCCGATCTACACAGTAGAAGACAAATTCGATTTCATCAAAGATAAACTAAGAGACAAAAAGAAGGGAGAGGTACTTTCTGAGATAATGCTATATCTTGTCGAAAAATCACTCGATCTCATTGACGATCCATTCATCCCATTCAGCATATCGAA
+>chrXVI_286197_286773_3:0:0_1:0:0_3
+AATTCTCGCAAACACGTCACAAGAAACACATTAATGCAAAATGTGGCACAGTCAAAAAACTGCGAAAATGTGTAAAAGATGAAAAGAACCGTGATCAGCACCAGCAGTGTACCAGATTTTGTGATCTGATTTATTATAGATTTACTCGATGACCTGAACTTGAATTATATTTAAATCGATGAAGGGGTTGAAACAGGTGT
+>chrXVI_289557_289973_4:0:0_3:0:0_d
+AACATTAAAAACAAATTTTTAGAAAAACAAAAGCTGAATTAAAGACTAAATATTACACAATTTCTTCATACATTTCCGCCCCAAAGTCAAACAGCCTAAATAATATAAAAATTAACTTTTGGCAGCTCCAACCTCTGTACTGCCATCTAAAACTTTTCCAGTAAACGGCTTATATACAGTTAACAACCCGTCACTATCAA
+>chrXVI_389175_389686_2:0:0_4:0:0_6
+TACCAACCGGTTGTGAGGTATATTGCACCTGATAAGATTGTTGATAGTTGGGTGCGTATCTAGAGGCGTGTTCATTCTGGTTTGGTGTATACGAACTAATAGAGCTTGTATGGCCTCTATGGGTCTTTACAAAATTGGGGGTATTTACGGCCGAAGCGGCAAGGTTTTGCACAACTGATGGATATTGCTTCTGCTGAACT
+>chrXVI_401813_402387_4:0:0_6:0:0_1
+TATTGACTCTACTGATAGCATTCTTATCAATAAAGGATGATTCTACTAAAAACTGGTTAAACGGCAAGGTATTCCGTCTAGTTTTTCAGAATATTTTACTGGAGCAAAACCCGGAACTATTGGAACTGTCTTTAGATGTTTATGTTGCGTTATTGGAGCATTATAAAGTTAAGCATACCTAAAAAACTTTAGATCATGTT
+>chrXVI_680224_680728_0:0:0_3:0:0_7
+GAGGAATGTTTTGGTTTGGTATATGAGGAATGTGATGATGCGTAGGGGTAGTTGTGGACAATCGATTGTTCCTGGTGTGAGACAGTGGTTTGACAATATAAGTTGTTCCCATCTGCTTTAGCTGCTGGTACTGATCCAGTTGAAAATCTTGCAGAGAAGGTAATAGAGGGGGAGGAAAATATTGATTTGAATTGTTGATA
+>chrXVI_693308_693805_2:0:0_2:0:0_c
+CTAAGTTGCCAACTTACACCGCCAAGGACTCTGCCGTGGCCACTAGAAAATTATCAGAAACTGTTCTTGAGGATGTTTACAATCAATTGCCAGAGTTGATTGGTGGTTCTGCCGATTTAACACCTTCTAACTTGACCAGATGGAAGGAAGGCCTTGACTACCAACCTCCTTCTTCCGGTTCAGGTAACTACTCTGGTAGA
+>chrXVI_752128_752641_3:0:0_2:0:0_5
+TCTCGAGTATTTTTCACTTTTAGTATATAAGTAAAACATAAAAAACATGAGAGGTGGTATGGTTTATTTGCCGTCACTGTGGAGCCTTCAAGTAATGTAAATAAGAGGGAAAGTGTGATAGTACAAGATGAGTTCGAATTCAACACCAGAAAATGTTACTGCAGCACACGTTCTGTGGTATATTCCCAATAAGATCGGTT
+>chrXVI_763341_763881_3:0:0_5:0:0_4
+AAGCTGCCAGCACCATGCGCGCTTCATACTGTTTATGTTCCTTTTGTCAGCTCTGCCCAAAGAAGCCCCTATAATTACGCCAATACAATATATGGTTTGCACATCATTCGTACAATTAATTCAGTCAAAACATATTTCAATATTAGGTCAATGGTTACATCTTCTTCATCTGCCAGAATAACATGGGGGAAATCTCTGCA
+>chrXVI_766516_767017_5:0:0_7:0:0_b
+TTACTTCCTTACAATGTTTCAACCAGCAAGAAAATCCCGTTTACCCTGAATTGCTGGCCCCCTTTTATGAAAATTCATCCTATAATAAGAACGCGCCAATGGTAGAAATATTTTGGATCCTGGGGCCATCAGTTGGAGGTATTTCAGATCTGGAAGATTTGATTGTTTCTCTACATCCATTGATTTTCAAGATGGATCAC
+>chrXVI_866925_867424_2:1:0_4:0:0_e
+ACAGTTCGCTCTGAAATCTCCCCCTGGGTTTCCCAATGGAATGAAACGTTGGAAAAAGAACTATCCGACCCTCGATCTAATTTGACTAGACATATTAGGATGAATTTCGAAACCTTTAGGTCATTACCTACATTGAAAAATAGCATAATTCCATTAGTAGCGACATCCAAAAATTTTGGTTCACTGTGCACTGCCATAAA
+>chrXVI_889501_889988_11:0:0_5:0:0_0
+TGGAATTTATTTCGTCCAGAATAGTATATTCCTTCCACAAGAACCATGCAACCTGGGACGTAGTAATGTCGTTGTGTAGGGATAGTTTGGGAAATGTCAATTTCGACAGATCCAGACGGATCTTCCAGTGACCAATTGCCCTTAAAGTTCTTATTTAAGAGCCCCAATAGTAGAAAGTTTTGAGCATCCCTACCTAGTAG
+>chrXVI_908795_909263_5:0:0_2:0:0_a
+ATTTCGCCTGAGCTTGAAAGGGCGCAGTAGTTGGTTTAGAGTAATGGTATGGTTGTCTGATAGGTATCCTACTTTTTATGAAAGAACTTGAAATGCTATCAATTGATCTTGGAGATATTGAACTTTTGAATTTTGTAGGACTGTTTCCCATTTGGTTGAGCAAACGGTCATTCTCGTCATCATCATCTTCTTCTACTCCT
+>chrXVI_912895_913350_7:0:0_5:0:0_9
+ATAACCATTTAGCGTGGAAAGGACTTTTTCTCTTATTTAGAACCACTGAGGTTGTCCCAGACATACTTTCGTATGATGAATATTTTGACCTGTGTGGCCAATATGCAGACGCACTTTAAAAGCCGGAACAGTCTCAAGTAGAACTAATAAATGACAAAAAATTACTACAGCAAACGCATCCATATTGTCAAAAAGCCTTT
+>chrXV_176307_176892_1:0:0_8:0:0_0
+TGCTACGAGATCATTATCTATGCTAGCCAGGTCCAAGGGTAACGAATATTTGATTCGCACTTTGCAACCATTACTAAAAAAAATTATCCAGAACAGAGATTTATTTGAAATTGAGAAACTAAAACCGGAAGATTCAGATGCTGAACGTCAAATAGAGCTCTTCGTTAAATACATGAATGAATTATTGGAATCCATATCCA
+>chrXV_178018_178568_1:0:0_3:0:0_6
+AAACTATTGTGCCACCTACTGTTAGTATCTCTTATTGGTCTGTTTGATGAGAGTAAAAAAATGAAAAACAGTTCGTATAACCTAATAGCTGCCACTGCGGCGTCATTTGGTTTGAACTTTGGCTCCCATTTTCATCGCTCTCCCGAGGTGTACGTCCCCGAAGATACTACAACATTTTTAGGTGTTATTGGAAAGTCTCT
+>chrXV_216562_216984_4:0:0_6:0:0_3
+GAGGGCGAAAAATAAAAACTGGAGCAAGGAATTACCATCACCGTCACCATCACCATCATATCGCCTTAGCCTCTAGCCATAGCCATCATGCAAGCGTGTATCTTCTAAGATTCAGTCATCATCATTACCGAGTTTTTTTTCCTTCACATGATGACGACGGTTTGAGTATGCTCGCAACAATAAGACGACGATGGCTCTGC
+>chrXV_277943_278444_6:0:0_5:0:0_7
+GGAACCTCAATAACGATCTACAATAATCATGTTCATCTCCCTCATTGTCTCTTATTTGATGTTACACACGCTTTTCTAGCATAGGAGGAACTTCCATATGCATACTAATAGATCCTGCTCATAAGACACGTATTATTCTGGTTAAAGACATGTCCCCGTCTAAATGTTCTTCTAAATCAATCCATACCGATCCCTCATTT
+>chrXV_279785_280344_3:0:0_3:0:0_4
+CCTGAATTTGATGAACATGGTGTCGGTTATGTAGAAGAATGTGTCAAAGTTCAGTGGGAATCGAGAACGTGAATAGTGGGTAATTTGTCATTCATGAATTTTTGATAATTAACTAGTTTACAGTATTTACATAGATTATATACGTATTTTTACAAATGTACAGTTTTTGTGTGCTTATCTTCTTTACGTGTCGATGCGTT
+>chrXV_309242_309769_3:0:0_5:0:0_f
+TACTTCATGACAAAATATAATTTTCCAGCTCAAAAATGTTTGTTTTTTTATGTAGAGACTATTTTCAAACTATCTTTGTTAAATTACTCATCACCATCGTTGAAATCCCGATTAATCCAACTTGGCCATGCTAACTCCTTTCTTAAAAAATCTTTGAATATCGTAAACAAAAACTGTTCTAGTTCTCCACCACTTCTTAA
+>chrXV_327632_328099_5:0:0_2:2:0_d
+CTCTAAAACTTCGCGAAAATTTACATATTCTGAACGAAGTGTTTACGAACCCTTCAATTGTGAACGTTTTTCACGGTGCATTCATGGATATTAATTGGCTTCAGCGAGATTTAGGTTTGTATGTCGTTGGTCTCTTCTATACTTACCATGCGTCTAAATCAATCGGTCTTCCTAGACATAGTTTGGCCTATCTTTAGGAG
+>chrXV_363464_363905_2:0:0_7:0:0_e
+AATTACATAATGTCGAAAGTTGTGAGTGAATACATTAAAGTAGTAAAACTTCACCTATAACATTAGATTTCCCAACTCTGACTACTGTCTTCTCGATATGGAACTTGTTACTCCATTCTAATAGTTTTCTTCGAAGGGCACCTTTTTTAGCCTATGCGCGCAGTTTAGTTTGCAGTCGGGTAGGGCCAAAATTATAATAT
+>chrXV_393534_394063_4:0:0_7:0:0_8
+CAATTTGCTTTTTCTGAGTTTCTCTGTGTATGACAAAACCAATGCACGCGTAGAGTCTTTTTCTTTTACTTTCGGTATCATTCAAGTACAGCGGAATTTCATTCAAGCACACTAATTTCTTCCGAATAGGGCAAAATACCCTTTGGAATTGAAATGCTAAAACTGCAGCTTCATATTCATTAATGTATTTGTCTGGTATC
+>chrXV_424352_424860_5:0:0_3:1:0_5
+GAATTTCAACTATCGGAGCTGCCACAACTCCTAGGCAACGTCGTTTTCCAGTGGTCCCTGACATATCAATTGCCGCACTGTCACTGTGCGCAAATATAATAGGAAACAGAGGACCGACGGAGACCATATCATTCCGCGGACAAAGAGTCCGAGCGAAGACCGGAAGGAAATATGACGGAGCAAGAATGCTTCCGCGGATG
+>chrXV_505758_506223_8:0:0_7:0:0_a
+TCTTAGAACTTGGACCGATTGTAATTAACTATCAGAACCATACTGCGTATAGCATGATCTAGTAAATCGTTCCCTTCTTCTTAAACACTGGAGTAGGCTTTTTCATGAAGATATTGTATTTGCATAGCATCAAGGTTCAGGCGATCGTCAGCCAAATACATTTGAGTCCAAGTCCTTATCTTTTATACTTTTCTAGATTG
+>chrXV_761786_762246_3:1:0_2:0:0_10
+CTCGGTCATGTAGGAGGAGGAAGCGATGTCAGACCCACACCGGAAGGTCTTGAACTTAACGTTCTCGATAATACCCGATTTATCATTCACCTGTATTTGTAGTTTTATCACATCTCCACACGCAGGGGCGCCCACGATTCCTGTGCCGACATTAGCTAAGGACTTAACCATGGACCCAACGTTTCTTGGGTTTGTGTAGT
+>chrXV_874725_875249_4:0:0_4:0:0_9
+TTTTCCAGGATTAGTACTTTCAACGAACAGATCCTTTTATAGCATTAATCGTTTAAATGCTGAAAATAAACTAAACGATATTGCAAATACGTCAAAAGAGGCATCCTCTTCAGTGGAGATGTTTAAGCCCCCAGAGTTCTCTCAATTTAAGGACTCTTATCAAAAAGACTATGAGAGAATAGCAAAATATACTTTGATTC
+>chrXV_966647_967179_2:0:0_6:0:0_2
+CTTCTTCTTCGTGAAACTAATCGCAGCGAGCCCTTTTAGGTCTCTCTGTTGAGCAGAAGGGGTTTTGTCTCTGTTGTGGTAGCTTTGATCGCATGATATTCTGGTGGTCACGTCTTCTTTGTTTTCTTTCCACTTTCGATATTGGGGACGCAAAGGAGGTAAGTTTGCGACCCTTTTGCGAACCTAGGCCCCAATACATT
+>chrXV_993147_993632_7:0:0_2:0:0_1
+TGATATGCTACTGTGTCACTTATCTGTGCGCAAGGATTACGATTTTATGCTTTCATTGGTCGAGCACATAGTATACGAAACAAATTTATGGCAGCCATTATTACTCACAGATAATATAGTTGGAAACAAAGAAAATTCCACTTTTCATTGCCTCTTTCATGGCGCCTCTCAAGATATTTCTACCAAACTTACTCTACTGG
+>chrXV_1055613_1056076_5:1:0_8:0:0_b
+AGACAAAAATGTACGGCAAGTTACCACTGGTTTTTACAGATGCCTGCATGGGAGTTCTCGGCGAAGTAACCTGTGAGTATAGTAGTGACGCTTTATATTCCTCACCAGCATGTACATGTGAACCGGGATTACAGTCAATGTTGTATTGTATTTACGAATCATTGACTGAAAAGGGTTATTCCAATAGAACCTTTGAAAAA
+>chrXV_1059149_1059680_2:0:0_1:0:0_11
+CAAACAAAAACACCCAAAATTACATTACTTAGAATGACCCTCAAGAGCAGGGTGCAATTTATCAAGCGATCATTGAACTAACTAAGTTCATATCCTGTATAGGCTTTAAAACAATGCACCCTAAGTTCAAATGCACCCCCCCTCGCCCCGCAGCGGACCCTTGAACAGAGAACTGTTTCGAGGTTCACCCAATTGGATCA
+>chrXV_1059215_1059682_4:0:0_3:0:0_c
+CGATCATAGAACTAACTAAGTTCATATCCTGTATAGGATTTAAAACAATGCACCGTAAGTTCAAATGCACCCCCCCTCGGCCCGCAGCGGACCCTTGAACAGAGAACTGTTTCGAGGTTCACCCAATTGGATCACTTGTATAATTTGTAATCGAGTTCGGATAAGATGTATACGAATCTAACTGTGTGCAGTATAATTAG
+>chrX_20624_21148_5:0:0_6:0:0_6
+CATTGAGAGGTTTGGACTCCGTACGTGTCTATTGTGGGGTGCTGCTTCTATGCTATGCTGCTTTGCTGTGTTTGCCTCCGTCGGTGTGACAAAGAAGTGGCCTCAAGGCAGCAGTCACCAAGACATTACTTCTCAGGGCGCCGGTAACTGTATGCTTGTGTTTACTATGTTCTTCATTTTTTCGTTCGCCACCACTTGGG
+>chrX_32511_32973_6:0:0_10:0:0_7
+TCTCATGTGTCGTTTGAACTTTCCCTCTAATACGAAACTCTTGCGATTGATAACCATATATAGGACCCACTACATCTGAACCAAAACACATTTTAACTTTTATTTTGTGGGCAATTTTCATTGCATCAATTCCTTTGTAAAGCACCTCTGTATTTTTTCTACTATTTTCAGGTCCCAAGCAAGCACTAAATTGATCAGAA
+>chrX_75095_75508_2:0:0_2:0:0_2
+AAAAACTCAAATATTTAGGACGCGCGATTACCAGCGGCATGTTTACTCGCTGGAAGATGTGAAATAATTCTTGAATATGGGTTTGCAGTTAGACAATTTCAATCTAAATAATCTTAATCGACTATTCAATTCTTAAATTGTAAGGTTTTTTAATGGCCTTTCAGTTCTAGTATTTTTTATAAAACAAGACCAACATACAT
+>chrX_131958_132464_9:0:0_5:0:0_0
+GAATGGCACATTGTAAATTCAGTTTCAGAAACAGATCTGTGCCTGAGATGTTGCAAGAATTAAAGCTATCATTGATACACCGAGAAACAAATTTAAACATTTGCTTTAAAAGATTGGAATAATGGGAAAGTAACGTCATGTTATCGGGTCTTTTTTTCAAAATGTACTCTTGTATCATACTGCAATTCCTCATCAGTTTC
+>chrX_185042_185518_4:0:0_1:0:0_b
+CGATCAATGGGGGCTGAAATCTTATGTTTTCCCAGTGCGTTCACTATTAAAACAGGGGAAGCACATTGGTAGTTACTAGGCAGCGCACGCGCGGTTGACACTCAATGCTATGTGCTCATGCCAGGGCAGGTTGGAATGCACGATCTCAGTGATCCAGAGTGGGAGAAACAATCACATATGAGCGCTCTCGAAAAAAGCTC
+>chrX_204570_205015_2:0:0_10:0:0_3
+AACTCATAGCTTCAAAATTTAATAAAAGATAATAGGATTACGTAGATGAGCCAAAAAAAATAAAAAAACGGACGTACTGCAGCCTGTTCAAGGACGGCTTGGTCGATTGTTTTTCTGTGTCGTAGAACTAGACTGAATATATATCATCGGTATCTTATACCCTCCTACAAGGTGGAAATAGTACGAGAACAGTCATCAAG
+>chrX_358634_359139_4:0:0_4:0:0_9
+TTCACCTTGGCTCACTAGTTCGTGAAGCTCATCGTAAATGGATAACCAAAGGGTGATGATAGTGCATGCAATGAAAATATCCAAGGGATAATTGCACGTCAGGACGTGGTCCCAAACGATTAGCACATATTTTAAGGGTAATTCTCTTAAAAATAACAACCATGTCCATCGGATGAGCCAGATTAGGTTGGAGTGAATCA
+>chrX_382849_383384_3:0:0_5:0:0_1
+TTTCACTATTTTATCTACAATACGTCGTGTTCGCAATAATCACCATCGTCATCTTCATCTTCGTCGTCATAATCAGCGGCACCAGAACCATCATCACCTCCGTACAACTTAGAAGTAATTTGATAAGCGACCTTGGACAAAGATTCGAACTTTTCATCAAAGTCTTCAGCAATGGCGGTTTCAAAGTTATCATCTAACCA
+>chrX_438844_439314_5:1:0_2:0:0_8
+TGGTTTTTTCGTCATCCATACTAGGTTCTTCATCGTTCTCGGAAAGACTATCATTACTCTGCTCCTCAATCTCAGAAACATCAGCAGAGAGCATCTGCTTTTCTTTAAAAACACTTTCTGCCTCCTCTAGTTCACTTTCTTCCCCGGATGATGAGTTCAGGGTGCTACCATCAGAGAGATTGTGAGAAGGCGTGAGCACA
+>chrX_582991_583504_1:0:0_3:0:0_a
+GTTGCTATTAACATTATTATTGGGCTTACTCAAAAAATCGTTTATACTCTTTTTTCCCTTGAGCATATTTGGTGAATTATTTACGTCCACAAATGTCTGTTGAATTCTTTTGGTAAAAGTAGAGAGGTATTCACTTGGGTTCTGGTTACCTAATTTCTGTTGTCCATTTCGGGGCAGTGTATCTTTGAACTGTAACTCTA
+>chrX_610495_611012_5:0:0_2:0:0_5
+AAGGATAAGTCCATCTCATTGGAAAAACAGTCCGGTATGAAGAAAAACATAAGCATTGGTGCTCAACTACTGAAAGAAGAAGGTTTTAGAGCTTTGTACAAGGGTATTACGCGAAGAGTGATGAGGGTGGCTCCAGGTCAGTCTGTCACCTTTACCGTTTATGAATATGTAAGGGAGCATTTAGAAAATTTGGGTATATT
+>chrX_743509_743937_3:0:0_2:0:0_4
+TCGAGAAGGGTTGTTCTGAACGCTTCTTGGCAGCCCATGGCATTGAAGAAAAAGTACCTAGTATTCCAAGCCTTATTTTCATCTAAGTACGAATTTAGATTTGCTGCCACAACTTCCCAATCATGAGGATCAGAACATGGTGTGTTTTCAGTAACCTCTTTGCAAAACTGAATGAGTTGTTTCGATAAGGAACGCTTACG
Binary file samtools_fastx/test-data/samtools_fastx-out3-3.fasta.gz has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fixmate/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
Binary file samtools_fixmate/test-data/2_isize_overflow.bam.expected has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fixmate/test-data/2_isize_overflow.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,20 @@
+@HD	VN:1.4	SO:queryname
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+of1	99	ref1	10	30	23M	=	8	2	AAGTCGGCAGCGTCAGATGTGTA	???????????????????????
+of1	147	ref1	8	30	23M	=	10	-2	CTGTCTCTTATACACATCTCCTT	???????????????????????
+r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*
+r001	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100
+r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10
+r003	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*
+r003	16	ref1	29	30	6H5M	*	0	0	TAGGC	*
+r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*
+r007	8	ref1	9	30	5H6M	*	0	0	AGCTAA	*
+r007	4	ref1	9	30	*	*	0	0	GGGGGG	*
+u1	4	*	0	30	*	*	0	0	TAATTGGGTCTTCAGAGCACCTA	???????????????????????
+x1	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*
+x2	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????
+x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????
+x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????
+x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????
+x6	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fixmate/test-data/2_isize_overflow.sam.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,20 @@
+@HD	VN:1.4	SO:queryname
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+of1	99	ref1	10	30	23M	=	8	21	AAGTCGGCAGCGTCAGATGTGTA	???????????????????????	MQ:i:30	MC:Z:23M
+of1	147	ref1	8	30	23M	=	10	-21	CTGTCTCTTATACACATCTCCTT	???????????????????????	MQ:i:30	MC:Z:23M
+r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	MQ:i:30	MC:Z:8M4I4M1D3M
+r001	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	MQ:i:30	MC:Z:9M
+r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10
+r003	33	ref1	9	30	5H6M	=	29	25	AGCTAA	*	MQ:i:30	MC:Z:6H5M
+r003	17	ref1	29	30	6H5M	=	9	-25	TAGGC	*	MQ:i:30	MC:Z:5H6M
+r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*
+r007	9	ref1	9	30	5H6M	=	9	0	AGCTAA	*	MC:Z:*
+r007	5	ref1	9	30	*	=	9	0	GGGGGG	*	MQ:i:30	MC:Z:5H6M
+u1	4	*	0	30	*	*	0	0	TAATTGGGTCTTCAGAGCACCTA	???????????????????????
+x1	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*
+x2	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????
+x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????
+x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????
+x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????
+x6	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????
Binary file samtools_fixmate/test-data/3_reverse_read_pp_lt.bam.expected has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fixmate/test-data/3_reverse_read_pp_lt.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,5 @@
+@HD	VN:1.4	SO:queryname
+@SQ	SN:1	LN:4569345
+@RG	ID:1#6	LB:1	SM:a
+MS0_12500:1:2114:20577:3664#6	99	1	40346	23	75M	=	40340	75	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	CCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGD	X0:i:1	X1:i:1	XA:Z:X,+8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	MQ:i:23	XT:A:U
+MS0_12500:1:2114:20577:3664#6	147	1	40340	23	75M	=	40346	-75	CAAAATCTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGT	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFCCF@GGGGGGGGGCCCCC	X0:i:1	X1:i:1	XA:Z:X,-8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	MQ:i:23	XT:A:U
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fixmate/test-data/3_reverse_read_pp_lt.sam.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,5 @@
+@HD	VN:1.4	SO:queryname
+@SQ	SN:1	LN:4569345
+@RG	ID:1#6	LB:1	SM:a
+MS0_12500:1:2114:20577:3664#6	99	1	40346	23	75M	=	40340	69	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	CCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGD	X0:i:1	X1:i:1	XA:Z:X,+8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	XT:A:U	MQ:i:23	MC:Z:75M
+MS0_12500:1:2114:20577:3664#6	147	1	40340	23	75M	=	40346	-69	CAAAATCTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGT	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFCCF@GGGGGGGGGCCCCC	X0:i:1	X1:i:1	XA:Z:X,-8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	XT:A:U	MQ:i:23	MC:Z:75M
Binary file samtools_fixmate/test-data/4_reverse_read_pp_equal.bam.expected has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fixmate/test-data/4_reverse_read_pp_equal.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,5 @@
+@HD	VN:1.4	SO:queryname
+@SQ	SN:1	LN:4569345
+@RG	ID:1#6	LB:1	SM:a
+MS0_12500:1:2114:20577:3664#6	99	1	40346	23	75M	=	40346	75	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	CCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGD	X0:i:1	X1:i:1	XA:Z:X,+8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	MQ:i:23	XT:A:U
+MS0_12500:1:2114:20577:3664#6	147	1	40346	23	75M	=	40346	-75	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFCCF@GGGGGGGGGCCCCC	X0:i:1	X1:i:1	XA:Z:X,-8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	MQ:i:23	XT:A:U
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fixmate/test-data/4_reverse_read_pp_equal.sam.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,5 @@
+@HD	VN:1.4	SO:queryname
+@SQ	SN:1	LN:4569345
+@RG	ID:1#6	LB:1	SM:a
+MS0_12500:1:2114:20577:3664#6	99	1	40346	23	75M	=	40346	75	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	CCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGD	X0:i:1	X1:i:1	XA:Z:X,+8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	XT:A:U	MQ:i:23	MC:Z:75M
+MS0_12500:1:2114:20577:3664#6	147	1	40346	23	75M	=	40346	-75	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFCCF@GGGGGGGGGCCCCC	X0:i:1	X1:i:1	XA:Z:X,-8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	XT:A:U	MQ:i:23	MC:Z:75M
Binary file samtools_fixmate/test-data/5_ct.bam.expected has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fixmate/test-data/5_ct.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,5 @@
+@HD	VN:1.4	SO:queryname
+@SQ	SN:1	LN:4569345
+@RG	ID:1#6	LB:1	SM:a
+MS0_12500:1:2114:20577:3664#6	99	1	40346	23	75M	=	40346	75	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	CCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGD	X0:i:1	X1:i:1	XA:Z:X,+8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	MQ:i:23	XT:A:U
+MS0_12500:1:2114:20577:3664#6	147	1	40346	23	75M	=	40346	-75	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFCCF@GGGGGGGGGCCCCC	X0:i:1	X1:i:1	XA:Z:X,-8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	MQ:i:23	XT:A:U
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fixmate/test-data/5_ct.sam.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,5 @@
+@HD	VN:1.4	SO:queryname
+@SQ	SN:1	LN:4569345
+@RG	ID:1#6	LB:1	SM:a
+MS0_12500:1:2114:20577:3664#6	99	1	40346	23	75M	=	40346	75	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	CCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGD	X0:i:1	X1:i:1	XA:Z:X,+8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	XT:A:U	MQ:i:23	MC:Z:75M	ct:Z:1F75M-75T2R75M
+MS0_12500:1:2114:20577:3664#6	147	1	40346	23	75M	=	40346	-75	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFCCF@GGGGGGGGGCCCCC	X0:i:1	X1:i:1	XA:Z:X,-8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	XT:A:U	MQ:i:23	MC:Z:75M
Binary file samtools_fixmate/test-data/6_ct_replace.bam.expected has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fixmate/test-data/6_ct_replace.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,5 @@
+@HD	VN:1.4	SO:queryname
+@SQ	SN:1	LN:4569345
+@RG	ID:1#6	LB:1	SM:a
+MS0_12500:1:2114:20577:3664#6	99	1	40346	23	75M	=	40346	75	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	CCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGD	X0:i:1	X1:i:1	XA:Z:X,+8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	XT:A:U	MQ:i:23
+MS0_12500:1:2114:20577:3664#6	147	1	40346	23	75M	=	40346	-75	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFCCF@GGGGGGGGGCCCCC	X0:i:1	X1:i:1	XA:Z:X,-8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	XT:A:U	MQ:i:23	ct:Z:1F70M-75T2R70M
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fixmate/test-data/6_ct_replace.sam.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,5 @@
+@HD	VN:1.4	SO:queryname
+@SQ	SN:1	LN:4569345
+@RG	ID:1#6	LB:1	SM:a
+MS0_12500:1:2114:20577:3664#6	99	1	40346	23	75M	=	40346	75	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	CCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGD	X0:i:1	X1:i:1	XA:Z:X,+8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	XT:A:U	MQ:i:23	MC:Z:75M	ct:Z:1F75M-75T2R75M
+MS0_12500:1:2114:20577:3664#6	147	1	40346	23	75M	=	40346	-75	CTCATGGACACCAACCACTCAATTATCTATCCACCTAGCCATGGCCATCACCTTATGAGCGGGCGCAGTGACTAT	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFCCF@GGGGGGGGGCCCCC	X0:i:1	X1:i:1	XA:Z:X,-8796,75M,2;	MD:Z:22C52	RG:Z:1#6	XG:i:0	AM:i:23	NM:i:1	SM:i:23	XM:i:1	XO:i:0	XT:A:U	MQ:i:23	MC:Z:75M
Binary file samtools_fixmate/test-data/7_two_read_mapped.bam.expected has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fixmate/test-data/7_two_read_mapped.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,22 @@
+@HD	VN:1.4	SO:queryname
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+of1	99	ref1	10	30	23M	=	8	2	AAGTCGGCAGCGTCAGATGTGTA	???????????????????????
+of1	147	ref1	8	30	23M	=	10	-2	CTGTCTCTTATACACATCTCCTT	???????????????????????
+r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*
+r001	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100
+r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10
+r003	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*
+r003	16	ref1	29	30	6H5M	*	0	0	TAGGC	*
+r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*
+r007	8	ref1	9	30	5H6M	*	0	0	AGCTAA	*
+r007	4	ref1	9	30	*	*	0	0	GGGGGG	*
+r008	12	ref1	9	30	5H6M	*	0	0	AGCTAA	*
+r008	4	ref1	9	30	*	*	0	0	GGGGGG	*
+uu1	4	*	0	30	*	*	0	0	TAATTGGGTCTTCAGAGCACCTA	???????????????????????
+x1	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*
+x2	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????
+x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????
+x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????
+x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????
+x6	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_fixmate/test-data/7_two_read_mapped.sam.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,22 @@
+@HD	VN:1.4	SO:queryname
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+of1	99	ref1	10	30	23M	=	8	21	AAGTCGGCAGCGTCAGATGTGTA	???????????????????????	MQ:i:30	MC:Z:23M
+of1	147	ref1	8	30	23M	=	10	-21	CTGTCTCTTATACACATCTCCTT	???????????????????????	MQ:i:30	MC:Z:23M
+r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	MQ:i:30	MC:Z:8M4I4M1D3M
+r001	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	MQ:i:30	MC:Z:9M
+r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10
+r003	33	ref1	9	30	5H6M	=	29	25	AGCTAA	*	MQ:i:30	MC:Z:6H5M
+r003	17	ref1	29	30	6H5M	=	9	-25	TAGGC	*	MQ:i:30	MC:Z:5H6M
+r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*
+r007	9	ref1	9	30	5H6M	=	9	0	AGCTAA	*	MC:Z:*
+r007	5	ref1	9	30	*	=	9	0	GGGGGG	*	MQ:i:30	MC:Z:5H6M
+r008	13	ref1	9	30	5H6M	=	9	0	AGCTAA	*
+r008	13	ref1	9	30	*	=	9	0	GGGGGG	*
+uu1	4	*	0	30	*	*	0	0	TAATTGGGTCTTCAGAGCACCTA	???????????????????????
+x1	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*
+x2	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????
+x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????
+x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????
+x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????
+x6	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_flagstat/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
Binary file samtools_flagstat/test-data/samtools_flagstat_input1.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_flagstat/test-data/samtools_flagstat_out1.txt	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,13 @@
+200 + 0 in total (QC-passed reads + QC-failed reads)
+0 + 0 secondary
+0 + 0 supplementary
+0 + 0 duplicates
+25 + 0 mapped (12.50% : N/A)
+200 + 0 paired in sequencing
+100 + 0 read1
+100 + 0 read2
+0 + 0 properly paired (0.00% : N/A)
+0 + 0 with itself and mate mapped
+25 + 0 singletons (12.50% : N/A)
+0 + 0 with mate mapped to a different chr
+0 + 0 with mate mapped to a different chr (mapQ>=5)
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_idxstats/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
Binary file samtools_idxstats/test-data/phiX.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_idxstats/test-data/samtools_idxstats_out.tabular	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,2 @@
+phiX174	5386	972	18
+*	0	0	10
Binary file samtools_idxstats/test-data/test_input_1_a.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_idxstats/test-data/test_input_1_a.bam.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,5 @@
+insert	599	2	0
+ref1	45	6	0
+ref2	40	6	0
+ref3	4	0	0
+*	0	0	1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_markdup/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
Binary file samtools_markdup/test-data/5_markdup.expected.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_markdup/test-data/5_markdup.expected.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,18 @@
+@HD	VN:1.4	SO:coordinate
+@SQ	SN:contig_000000000	LN:11391
+entry1	1187	contig_000000000	109	60	250M	=	137	278	GATTGATATTTATTTATTATTTTATTATGTTTATTTCTTTATTTATTATCATTATTATTATTATTCTTATTATTGTTATATAAAAACATCGTAAACACAGTAAACGATAGTACTAATACTACTACTAATAAAGATAGATTTTTTTATATATATATATGTATGATCTTTTAACGTTACTTATTCAAATGCTATGTCATTTTGTAATATTTGTCATGGCAAGTATCAAACTGCTTCGGTTCTCATTGATTAG	1111>DD3DFFF3B333B3FBG3D3A33BG3D3F3333AFG3DF3D33B22D22222222D2B2A2ADE2AA2DAG222BD22D11//11//00B110ABB2FD1?>/>A2@2@2@F2@F21GB11FDDF21111111B2B11>/?1FB22>>>22>B2BG22B12B>F>11/0<0/2B2222B2@G11>22@22@G222201?1??1<?DF1FG1001<1>1F1=11>111>1-....000=0000=00	NM:i:18	AS:i:164	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:6744
+entry2	163	contig_000000000	109	60	250M	=	137	278	TATTGATATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATACAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCATGTATCAAACTGCCTGGGTTATCATTGATTAG	BBBBB5F5DFFFGGGFGGGGGGHHHHHHHHHGHHGHHHHHHHHHHHHGGHHHHHHHEHHGHHGHHFHHHHHGHHHHHFHHHD5A33FBGBFHGGGFGGEGGGBGGAEGAEHH5GD5FEGFD5GGFGHFHE4GHGGHHHHHHHDEEA?FGHHGHGHFBEFFHEGHH4GGHHCFFFHHFHHHHHHBFHG1FFBFF01BGHHHFCFF@1GHHBGGFHFF1?1?FBGGF11FD110FG.<FFGGH1FGH0DG00	NM:i:2	AS:i:240	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9279
+entry3	99	contig_000000000	116	60	250M	=	222	356	ATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAG	BBBBBFFFFFFFGGGGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGHHHHHHHHHHHHHHHHHHGGHGGHGHHHHHGHHHHHHHHHFHHHGHHGHHHHGHHHGGHHHHHHHHHHHHHGHHHHHGHHHHIHHHIIHHHHHHHGHGHHHGHHHHGHHHGHHGHHHHGHHHHHHGHBFFHHHHHHHGHHHGHEHHHFFGGHHHHHHHEHHHFH=GHHHF	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9509
+entry4	1187	contig_000000000	116	60	250M	=	222	356	ATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAG	BCCCCFFFFFFFGGGGGGGGGGEHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHGHHGHHHHHEEF5FEGFGFHHGHHFHHHHFHFDEGHAEGHHHFHHFHFFHHGBGGHHFHHFHFHHHGGHGHFGEFHDGGHGHHHHGDHHFFHHGHHHDFDHGHHHHHGHGBHGHHFBDHGGF2FDHHHBGD2@DHHFEHHFFHEC2<FD1GF<DDGHHB0GHAAFFCGGDHHG1FGF0DDGGFH0	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9604
+entry1	1107	contig_000000000	137	60	250M	=	109	-278	TTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAGAACCTAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATTTATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCACACTGCCTGGGTTATCATTGATTCGGTACTAGAGATAGTGTTTAAATAATACG	;0C0G;0C0:0FFGDD00D==00000D=00D1D=1DDDF>11=<<1><111<?1<111?1D1??00<>@@11F//0A>2HG>B>2B22222B2FFB2BB22>>2B22BFBEEFGHHG2FGBB22FFB2DB1100F/1FG@G1BHHFGGAGB1DB@22EB00GCEADB1AFHHHGD21BEDF1AF1FA11DAA221BD1AA/EF00FF1FF2EDEBGEA0B03AD3D33AB1A1GEFGEFB3DB31>>11>	NM:i:7	AS:i:222	XS:i:19	MQ:i:60	MC:Z:250M	ms:i:5687
+entry2	83	contig_000000000	137	60	250M	=	109	-278	GTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAG	0GHHHBD0DFGHHHG<D0FD0BD0FHHHG=GGBGG1DGDGHFFGFDHDHGFGAGGHHHGHHHHHHHGGFHHHEGHHGHHGHHGHHHHDBHHHHHHGFGHHHHFHHHFHFG@EBGG4BHGGHHHHHHHHGHHHHHHGHFGBHHHHHHHHHHFHFFHHHHEHFHHHHHHGAFHHHFGHHG2HFHHHGHHHHHHHGHEHHHHGEHGHGHHHHGHHHHHHHHHHHHHGFGHFGFGGGGGGGGFFFFFDFBBBBB	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8804
+entry3	147	contig_000000000	222	60	250M	=	116	-356	TAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGCCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTA	9BGC0FFBGFFGGGGFFGFEGGHGHGCGHHHHGHGGHGHHHGHHHHGHHGGGHHHHFHGHGHHHHHHGHHFHHHHHHHHHGHHHHGHHGHHHHG2HHGFHHGHHHHHHDFHHHGGHHGHGHHHFHHDHHHHHHHHHHHHFHHHHHGHHHHHHHHHHHHFFHHHHGHHHHHHFHHHHHHHHHHHHHHGCGGGHHHGGGGGGGGGGGGGGGHHHHHGHHHHHHHHHHHHHGGGGGGGGGGFFFFFFFBBBBB	NM:i:1	AS:i:245	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9634
+entry4	1107	contig_000000000	222	60	250M	=	116	-356	TAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGTCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTA	GGGGGGGGGGGGGGGGGFFGHHHHHGGHHGHHHHGFHHHHGHHHHHHHHHGGHHFEHHHHHHHHHGGHHHHHHHHHHHFHHGFHGHHHGFFHFHHHHHHHHHFHHEHHHHHHHGGHHGHGHHHHHHHHHFGGHHHHHHGFHFHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHGHHHHHHHHHHHGGGGGHHHGGGGGGGGGGGGGGGHHHHHHHGHHHHHGHHHHHGGGGGGGGGGFFFFFFFACCBB	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9217
+entry5	163	contig_000000000	304	60	250M	=	422	368	ATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGTCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTAATAGAGTGTAAGAGAGTGTCAGAGTGAGTGTGTAAATGGACGCCTATCATTTAGCATGGGTCAATCTAGTGAAAGCTCGCAG	AABBBFFFFFFFGGGFGGGGGGHHHHHHHHHGHHHHHHHGGHGHHHHHHHHHHGHHHHHHHHFHFGHHHHHHHHHGHGGHFHHHHHHHHHHGFFHHHHHEHHHGHHHHHGDEEGHGHGEGGHHHHHHHHHGHHHFGHHHHHHHFGHHHHHGG?GGGAGHHFFHHFFGG2>@FGGFGFBGGHFHGHHHHHFFF?FGHHGGGGFGEGGHHGGGGHGFGDGHGHHFHEGFHGFGFFHFFHHFHGHFHBFGGF?	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9562
+entry6	69	contig_000000000	304	0	*	=	304	0	GCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAG	BCCCBCBCFFDDGGGGGGGGGGGHGGHHHHHHGHHGGGHHHHHHHHHHHHGGHGGHGGGGGHHHHHHHHHHHHHHHGGGGGHHHHHHHHHHGGGGGHHHGGGGGGDGGHHHHGHHGHHHGHHGGGGGGGHHGGGGGGGGGGAGGGGGGDGAGFGGGGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBEFFFFFFFFFEFFFFFFEFFFFFF	AS:i:0	XS:i:0	MQ:i:49	MC:Z:35M215S	ms:i:9339
+entry6	1161	contig_000000000	304	49	35M215S	=	304	0	ATTTTGTAACATTTGTCATGCCAAGTATCAAACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCT	ABBBBFFFFFFFGGGGGGGGGGHHHHHHHHGHGHHHHHHHGHHHGHGHHHHHHFGHHGHHHIHHHHHIHHHHHHHHHGHHHHHHHHGHGGGGGHGGGGGHHHHHHHGG1EGGGGGGFHGGHHHGHGGGGGGHHHHGGCGFHHGHHHHFHEHHHHHHHGGGHHGGGHGEGHGFHGCGCFHHHHHHHGGGGD?FFGA9EFFGCGG?AGGFGGGGGGFFFFFFFFFFFFFFFFFBFFEF?FEBBFED.ACFF0	NM:i:0	AS:i:35	XS:i:0	MC:Z:*	ms:i:9398
+entry5	83	contig_000000000	422	60	250M	=	304	-368	TGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTAATAGAGTGTAAGAGAGTGTCAGAGTGAGTGTGTAAATGGACGCCTATCATTTAGCATGGGTCAATCTAGTGAAAGCTCGCAGCAGCTCTCTAAGTGTCTGGCATTGCAGCAAATTGAGCCGAATGCATTTCTGCACACGTAAACACGGCAGAATACAGATTAGCCAAGCCCAATCTCTCATTAAATCCACATTTAATAGA	.DDFGEAGGGFGFHGHHFFHHHHHHHHHHGCHHHHHHFFHHHHHHHHHHHHHHHHHHGHHFHHHHHHGHHHHHHHHHGHHHHHHHHGGGGGHGHHHFHHHHFHHHHHHHHHGHHHHHHHHHHHEEEEGHHHHHHHGHHHHHHHHHGHGHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHGHFHHHGGGHHHHHHHHHHHHHHGHHGGHHHHHHFHEFCHHGGGGGGGGGGFFFFFFFCCCCC	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9461
+entry7	121	contig_000000000	3891	60	250M	=	3891	0	ACACCACCAGCACCAGCCTAAACCGTTGATACAAGGCAGGATGGATCCGTGCTTTCATGTTGTTGATGCTAAATTCTGACTCACATCTGAATATTCCAGCAGAAATCGAGACTCATCAGAGCAGGCAACGTTTTTACAATCTTTTATTGTCCAATTTTGGTGAGCCTGTGTGAATTGTAGTCTCAGTTTCCTGTTCTTAGCTGACAGGAGTGGCACCCGGTGTGGTCTTCTGCTGCTGTAGCCCATCCGC	99;GFC/0FC;/AFGFC0BDA.?BGFFC0FB9G0C/HHGBFHG:.GFCGEHGHGHFHHHEFHHGBGDF1EHF1GFGGFDFHFHHHFHHG1BG1HHGHHEHGBC>2<2HHHHFHHFHHHHFEGD2EFHHGEF4EHHFFG?/GGF3GFFCE3HGHFHGAHFGF1AGHHGGHHGD5HGF3HF3HHFHHHGHG1FEHHHFHHHEHHGFHHHFHHHHFGGCECEEGHHHGHHHGGGGFGGFFGFFF4BBBBBABB	NM:i:0	AS:i:250	XS:i:0	MC:Z:*	ms:i:4569
+entry7	181	contig_000000000	3891	0	*	=	3891	0	CAGTCACTCGCCTCCCGCTAACAGTCCAACTCTTCTGGTTCATCTGCGAGTCATGGTGTACCGATGTTTTGTTCTCTAGAAAGCGAAAACATTGATATGGCTGAGGGGGGCTAGCAATTTTGGCCTGATAATGGGTGTGAAATATTCAAACTGTTATGATGCTAGCCCAAATAAAACTGTTGGGACTATCTCGGGAAGAAAAATCATGATCAGAGAAGCTAGGAAAGTGTCCTTGGTATGGTAAGCACTG	////-------;----0090;.9/0/000A//::.;.0000::.?@<=0/0=0./00..<..11>00>>0111<?111<////<20GF@212222<1F011B?//<E0FGFB211B1?0/??01BB22210?>?1@222B22@211122B11E@22112110000/B222A222ADB//0FB2DDBA///A/01D11011ADD211D1211BA11A311331D1A10B1FAFB1A1B3111@33111>11	AS:i:0	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8580
+entry8	1145	contig_000000000	3891	60	250M	=	3891	0	ACACCACCAGCACCAGCCTAAACCGTTGATACAAGGCAGGATGGATCCGTGCTTTCATGTTGTTGATGCTAAATTCTGACTCACATCTGAATATTCCAGCAGAAATCGAGACTCATCAGAGCAGGCAACGTTTTTACAATCTTTTATTGTCCAATTTTGGTGAGCCTGTGTGAATTGTAGTCTCAGTTTCCTGTTCTTAGCTGACAGGAGTGGCACCCGGTGTGGTCTTCTGCTGCTGTAGCCCATCCGC	99;.9//FFF9/GFB9FBGBC.A.FCFGFGFBHHGB:0GHFCG-AA@CHGC0FFGGC.HC>><BGFFHHGGHEHFHHFGFFGHHGF1?11<1HHG<CFGBFGEHFGFGDHHG2FGEHFHCGGDGGHGFGGFDFHHFHHGGFHGEEHFBGEHHHGGEFHHHHGAGHFE1BFHHHGHGGGFHFHFDDFFCAEFFGEFHHHHHHFHGGBFHFHFFEEA?CEEAHHHHHCGF0CFFGFFF1FFF1AA@DAAA@A	NM:i:0	AS:i:250	XS:i:0	MC:Z:*	ms:i:3281
+entry8	181	contig_000000000	3891	0	*	=	3891	0	GACGGCGCCTGGAGCGCGTAGGCAAAGCATGATCATCTGAGCACGGCGAACGAGAGTCAGACAAAGGGTTGATCGCCAGTAACGCTCGAGAAAGACACTCCCCCGCAACAACAATCAAACCAACAGTGCACTTTCATTTGCGAATCATGGAATAATGTTGGTTTGGGCTGTAGAAGGCCAAGATATATAAATTGCTGTAGAGGGTTGGGCATGTGGACCGTAAAATGGGTGGGAAGTATAAGAACTTTGT	9;-----/;;--------/;9//////////////////-9------;...C09000;00090/...90.;---./00....-..<.000=0<00..---////1</00211221/B?//122011211111B111//>//2221122222@11>///CE?>/>//1112211111012B22222AD22110011111B/0A///B01111111ABB0013ED10FE1B111333A3333@33D>>1111	AS:i:0	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8542
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_markdup/test-data/5_markdup.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,18 @@
+@HD	VN:1.4	SO:coordinate
+@SQ	SN:contig_000000000	LN:11391
+entry1	163	contig_000000000	109	60	250M	=	137	278	GATTGATATTTATTTATTATTTTATTATGTTTATTTCTTTATTTATTATCATTATTATTATTATTCTTATTATTGTTATATAAAAACATCGTAAACACAGTAAACGATAGTACTAATACTACTACTAATAAAGATAGATTTTTTTATATATATATATGTATGATCTTTTAACGTTACTTATTCAAATGCTATGTCATTTTGTAATATTTGTCATGGCAAGTATCAAACTGCTTCGGTTCTCATTGATTAG	1111>DD3DFFF3B333B3FBG3D3A33BG3D3F3333AFG3DF3D33B22D22222222D2B2A2ADE2AA2DAG222BD22D11//11//00B110ABB2FD1?>/>A2@2@2@F2@F21GB11FDDF21111111B2B11>/?1FB22>>>22>B2BG22B12B>F>11/0<0/2B2222B2@G11>22@22@G222201?1??1<?DF1FG1001<1>1F1=11>111>1-....000=0000=00	NM:i:18	AS:i:164	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:6744
+entry2	163	contig_000000000	109	60	250M	=	137	278	TATTGATATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATACAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCATGTATCAAACTGCCTGGGTTATCATTGATTAG	BBBBB5F5DFFFGGGFGGGGGGHHHHHHHHHGHHGHHHHHHHHHHHHGGHHHHHHHEHHGHHGHHFHHHHHGHHHHHFHHHD5A33FBGBFHGGGFGGEGGGBGGAEGAEHH5GD5FEGFD5GGFGHFHE4GHGGHHHHHHHDEEA?FGHHGHGHFBEFFHEGHH4GGHHCFFFHHFHHHHHHBFHG1FFBFF01BGHHHFCFF@1GHHBGGFHFF1?1?FBGGF11FD110FG.<FFGGH1FGH0DG00	NM:i:2	AS:i:240	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9279
+entry3	99	contig_000000000	116	60	250M	=	222	356	ATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAG	BBBBBFFFFFFFGGGGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGHHHHHHHHHHHHHHHHHHGGHGGHGHHHHHGHHHHHHHHHFHHHGHHGHHHHGHHHGGHHHHHHHHHHHHHGHHHHHGHHHHIHHHIIHHHHHHHGHGHHHGHHHHGHHHGHHGHHHHGHHHHHHGHBFFHHHHHHHGHHHGHEHHHFFGGHHHHHHHEHHHFH=GHHHF	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9509
+entry4	163	contig_000000000	116	60	250M	=	222	356	ATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAG	BCCCCFFFFFFFGGGGGGGGGGEHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHGHHGHHHHHEEF5FEGFGFHHGHHFHHHHFHFDEGHAEGHHHFHHFHFFHHGBGGHHFHHFHFHHHGGHGHFGEFHDGGHGHHHHGDHHFFHHGHHHDFDHGHHHHHGHGBHGHHFBDHGGF2FDHHHBGD2@DHHFEHHFFHEC2<FD1GF<DDGHHB0GHAAFFCGGDHHG1FGF0DDGGFH0	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9604
+entry1	83	contig_000000000	137	60	250M	=	109	-278	TTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAGAACCTAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATTTATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCACACTGCCTGGGTTATCATTGATTCGGTACTAGAGATAGTGTTTAAATAATACG	;0C0G;0C0:0FFGDD00D==00000D=00D1D=1DDDF>11=<<1><111<?1<111?1D1??00<>@@11F//0A>2HG>B>2B22222B2FFB2BB22>>2B22BFBEEFGHHG2FGBB22FFB2DB1100F/1FG@G1BHHFGGAGB1DB@22EB00GCEADB1AFHHHGD21BEDF1AF1FA11DAA221BD1AA/EF00FF1FF2EDEBGEA0B03AD3D33AB1A1GEFGEFB3DB31>>11>	NM:i:7	AS:i:222	XS:i:19	MQ:i:60	MC:Z:250M	ms:i:5687
+entry2	83	contig_000000000	137	60	250M	=	109	-278	GTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAG	0GHHHBD0DFGHHHG<D0FD0BD0FHHHG=GGBGG1DGDGHFFGFDHDHGFGAGGHHHGHHHHHHHGGFHHHEGHHGHHGHHGHHHHDBHHHHHHGFGHHHHFHHHFHFG@EBGG4BHGGHHHHHHHHGHHHHHHGHFGBHHHHHHHHHHFHFFHHHHEHFHHHHHHGAFHHHFGHHG2HFHHHGHHHHHHHGHEHHHHGEHGHGHHHHGHHHHHHHHHHHHHGFGHFGFGGGGGGGGFFFFFDFBBBBB	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8804
+entry3	147	contig_000000000	222	60	250M	=	116	-356	TAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGCCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTA	9BGC0FFBGFFGGGGFFGFEGGHGHGCGHHHHGHGGHGHHHGHHHHGHHGGGHHHHFHGHGHHHHHHGHHFHHHHHHHHHGHHHHGHHGHHHHG2HHGFHHGHHHHHHDFHHHGGHHGHGHHHFHHDHHHHHHHHHHHHFHHHHHGHHHHHHHHHHHHFFHHHHGHHHHHHFHHHHHHHHHHHHHHGCGGGHHHGGGGGGGGGGGGGGGHHHHHGHHHHHHHHHHHHHGGGGGGGGGGFFFFFFFBBBBB	NM:i:1	AS:i:245	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9634
+entry4	83	contig_000000000	222	60	250M	=	116	-356	TAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGTCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTA	GGGGGGGGGGGGGGGGGFFGHHHHHGGHHGHHHHGFHHHHGHHHHHHHHHGGHHFEHHHHHHHHHGGHHHHHHHHHHHFHHGFHGHHHGFFHFHHHHHHHHHFHHEHHHHHHHGGHHGHGHHHHHHHHHFGGHHHHHHGFHFHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHGHHHHHHHHHHHGGGGGHHHGGGGGGGGGGGGGGGHHHHHHHGHHHHHGHHHHHGGGGGGGGGGFFFFFFFACCBB	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9217
+entry5	163	contig_000000000	304	60	250M	=	422	368	ATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGTCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTAATAGAGTGTAAGAGAGTGTCAGAGTGAGTGTGTAAATGGACGCCTATCATTTAGCATGGGTCAATCTAGTGAAAGCTCGCAG	AABBBFFFFFFFGGGFGGGGGGHHHHHHHHHGHHHHHHHGGHGHHHHHHHHHHGHHHHHHHHFHFGHHHHHHHHHGHGGHFHHHHHHHHHHGFFHHHHHEHHHGHHHHHGDEEGHGHGEGGHHHHHHHHHGHHHFGHHHHHHHFGHHHHHGG?GGGAGHHFFHHFFGG2>@FGGFGFBGGHFHGHHHHHFFF?FGHHGGGGFGEGGHHGGGGHGFGDGHGHHFHEGFHGFGFFHFFHHFHGHFHBFGGF?	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9562
+entry6	69	contig_000000000	304	0	*	=	304	0	GCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAG	BCCCBCBCFFDDGGGGGGGGGGGHGGHHHHHHGHHGGGHHHHHHHHHHHHGGHGGHGGGGGHHHHHHHHHHHHHHHGGGGGHHHHHHHHHHGGGGGHHHGGGGGGDGGHHHHGHHGHHHGHHGGGGGGGHHGGGGGGGGGGAGGGGGGDGAGFGGGGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBEFFFFFFFFFEFFFFFFEFFFFFF	AS:i:0	XS:i:0	MQ:i:49	MC:Z:35M215S	ms:i:9339
+entry6	137	contig_000000000	304	49	35M215S	=	304	0	ATTTTGTAACATTTGTCATGCCAAGTATCAAACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCT	ABBBBFFFFFFFGGGGGGGGGGHHHHHHHHGHGHHHHHHHGHHHGHGHHHHHHFGHHGHHHIHHHHHIHHHHHHHHHGHHHHHHHHGHGGGGGHGGGGGHHHHHHHGG1EGGGGGGFHGGHHHGHGGGGGGHHHHGGCGFHHGHHHHFHEHHHHHHHGGGHHGGGHGEGHGFHGCGCFHHHHHHHGGGGD?FFGA9EFFGCGG?AGGFGGGGGGFFFFFFFFFFFFFFFFFBFFEF?FEBBFED.ACFF0	NM:i:0	AS:i:35	XS:i:0	MC:Z:*	ms:i:9398
+entry5	83	contig_000000000	422	60	250M	=	304	-368	TGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTAATAGAGTGTAAGAGAGTGTCAGAGTGAGTGTGTAAATGGACGCCTATCATTTAGCATGGGTCAATCTAGTGAAAGCTCGCAGCAGCTCTCTAAGTGTCTGGCATTGCAGCAAATTGAGCCGAATGCATTTCTGCACACGTAAACACGGCAGAATACAGATTAGCCAAGCCCAATCTCTCATTAAATCCACATTTAATAGA	.DDFGEAGGGFGFHGHHFFHHHHHHHHHHGCHHHHHHFFHHHHHHHHHHHHHHHHHHGHHFHHHHHHGHHHHHHHHHGHHHHHHHHGGGGGHGHHHFHHHHFHHHHHHHHHGHHHHHHHHHHHEEEEGHHHHHHHGHHHHHHHHHGHGHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHGHFHHHGGGHHHHHHHHHHHHHHGHHGGHHHHHHFHEFCHHGGGGGGGGGGFFFFFFFCCCCC	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9461
+entry7	121	contig_000000000	3891	60	250M	=	3891	0	ACACCACCAGCACCAGCCTAAACCGTTGATACAAGGCAGGATGGATCCGTGCTTTCATGTTGTTGATGCTAAATTCTGACTCACATCTGAATATTCCAGCAGAAATCGAGACTCATCAGAGCAGGCAACGTTTTTACAATCTTTTATTGTCCAATTTTGGTGAGCCTGTGTGAATTGTAGTCTCAGTTTCCTGTTCTTAGCTGACAGGAGTGGCACCCGGTGTGGTCTTCTGCTGCTGTAGCCCATCCGC	99;GFC/0FC;/AFGFC0BDA.?BGFFC0FB9G0C/HHGBFHG:.GFCGEHGHGHFHHHEFHHGBGDF1EHF1GFGGFDFHFHHHFHHG1BG1HHGHHEHGBC>2<2HHHHFHHFHHHHFEGD2EFHHGEF4EHHFFG?/GGF3GFFCE3HGHFHGAHFGF1AGHHGGHHGD5HGF3HF3HHFHHHGHG1FEHHHFHHHEHHGFHHHFHHHHFGGCECEEGHHHGHHHGGGGFGGFFGFFF4BBBBBABB	NM:i:0	AS:i:250	XS:i:0	MC:Z:*	ms:i:4569
+entry7	181	contig_000000000	3891	0	*	=	3891	0	CAGTCACTCGCCTCCCGCTAACAGTCCAACTCTTCTGGTTCATCTGCGAGTCATGGTGTACCGATGTTTTGTTCTCTAGAAAGCGAAAACATTGATATGGCTGAGGGGGGCTAGCAATTTTGGCCTGATAATGGGTGTGAAATATTCAAACTGTTATGATGCTAGCCCAAATAAAACTGTTGGGACTATCTCGGGAAGAAAAATCATGATCAGAGAAGCTAGGAAAGTGTCCTTGGTATGGTAAGCACTG	////-------;----0090;.9/0/000A//::.;.0000::.?@<=0/0=0./00..<..11>00>>0111<?111<////<20GF@212222<1F011B?//<E0FGFB211B1?0/??01BB22210?>?1@222B22@211122B11E@22112110000/B222A222ADB//0FB2DDBA///A/01D11011ADD211D1211BA11A311331D1A10B1FAFB1A1B3111@33111>11	AS:i:0	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8580
+entry8	121	contig_000000000	3891	60	250M	=	3891	0	ACACCACCAGCACCAGCCTAAACCGTTGATACAAGGCAGGATGGATCCGTGCTTTCATGTTGTTGATGCTAAATTCTGACTCACATCTGAATATTCCAGCAGAAATCGAGACTCATCAGAGCAGGCAACGTTTTTACAATCTTTTATTGTCCAATTTTGGTGAGCCTGTGTGAATTGTAGTCTCAGTTTCCTGTTCTTAGCTGACAGGAGTGGCACCCGGTGTGGTCTTCTGCTGCTGTAGCCCATCCGC	99;.9//FFF9/GFB9FBGBC.A.FCFGFGFBHHGB:0GHFCG-AA@CHGC0FFGGC.HC>><BGFFHHGGHEHFHHFGFFGHHGF1?11<1HHG<CFGBFGEHFGFGDHHG2FGEHFHCGGDGGHGFGGFDFHHFHHGGFHGEEHFBGEHHHGGEFHHHHGAGHFE1BFHHHGHGGGFHFHFDDFFCAEFFGEFHHHHHHFHGGBFHFHFFEEA?CEEAHHHHHCGF0CFFGFFF1FFF1AA@DAAA@A	NM:i:0	AS:i:250	XS:i:0	MC:Z:*	ms:i:3281
+entry8	181	contig_000000000	3891	0	*	=	3891	0	GACGGCGCCTGGAGCGCGTAGGCAAAGCATGATCATCTGAGCACGGCGAACGAGAGTCAGACAAAGGGTTGATCGCCAGTAACGCTCGAGAAAGACACTCCCCCGCAACAACAATCAAACCAACAGTGCACTTTCATTTGCGAATCATGGAATAATGTTGGTTTGGGCTGTAGAAGGCCAAGATATATAAATTGCTGTAGAGGGTTGGGCATGTGGACCGTAAAATGGGTGGGAAGTATAAGAACTTTGT	9;-----/;;--------/;9//////////////////-9------;...C09000;00090/...90.;---./00....-..<.000=0<00..---////1</00211221/B?//122011211111B111//>//2221122222@11>///CE?>/>//1112211111012B22222AD22110011111B/0A///B01111111ABB0013ED10FE1B111333A3333@33D>>1111	AS:i:0	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8542
Binary file samtools_markdup/test-data/6_remove_dups.expected.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_markdup/test-data/6_remove_dups.expected.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,12 @@
+@HD	VN:1.4	SO:coordinate
+@SQ	SN:contig_000000000	LN:11391
+entry2	163	contig_000000000	109	60	250M	=	137	278	TATTGATATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATACAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCATGTATCAAACTGCCTGGGTTATCATTGATTAG	BBBBB5F5DFFFGGGFGGGGGGHHHHHHHHHGHHGHHHHHHHHHHHHGGHHHHHHHEHHGHHGHHFHHHHHGHHHHHFHHHD5A33FBGBFHGGGFGGEGGGBGGAEGAEHH5GD5FEGFD5GGFGHFHE4GHGGHHHHHHHDEEA?FGHHGHGHFBEFFHEGHH4GGHHCFFFHHFHHHHHHBFHG1FFBFF01BGHHHFCFF@1GHHBGGFHFF1?1?FBGGF11FD110FG.<FFGGH1FGH0DG00	NM:i:2	AS:i:240	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9279
+entry3	99	contig_000000000	116	60	250M	=	222	356	ATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAG	BBBBBFFFFFFFGGGGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGHHHHHHHHHHHHHHHHHHGGHGGHGHHHHHGHHHHHHHHHFHHHGHHGHHHHGHHHGGHHHHHHHHHHHHHGHHHHHGHHHHIHHHIIHHHHHHHGHGHHHGHHHHGHHHGHHGHHHHGHHHHHHGHBFFHHHHHHHGHHHGHEHHHFFGGHHHHHHHEHHHFH=GHHHF	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9509
+entry2	83	contig_000000000	137	60	250M	=	109	-278	GTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAG	0GHHHBD0DFGHHHG<D0FD0BD0FHHHG=GGBGG1DGDGHFFGFDHDHGFGAGGHHHGHHHHHHHGGFHHHEGHHGHHGHHGHHHHDBHHHHHHGFGHHHHFHHHFHFG@EBGG4BHGGHHHHHHHHGHHHHHHGHFGBHHHHHHHHHHFHFFHHHHEHFHHHHHHGAFHHHFGHHG2HFHHHGHHHHHHHGHEHHHHGEHGHGHHHHGHHHHHHHHHHHHHGFGHFGFGGGGGGGGFFFFFDFBBBBB	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8804
+entry3	147	contig_000000000	222	60	250M	=	116	-356	TAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGCCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTA	9BGC0FFBGFFGGGGFFGFEGGHGHGCGHHHHGHGGHGHHHGHHHHGHHGGGHHHHFHGHGHHHHHHGHHFHHHHHHHHHGHHHHGHHGHHHHG2HHGFHHGHHHHHHDFHHHGGHHGHGHHHFHHDHHHHHHHHHHHHFHHHHHGHHHHHHHHHHHHFFHHHHGHHHHHHFHHHHHHHHHHHHHHGCGGGHHHGGGGGGGGGGGGGGGHHHHHGHHHHHHHHHHHHHGGGGGGGGGGFFFFFFFBBBBB	NM:i:1	AS:i:245	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9634
+entry5	163	contig_000000000	304	60	250M	=	422	368	ATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGTCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTAATAGAGTGTAAGAGAGTGTCAGAGTGAGTGTGTAAATGGACGCCTATCATTTAGCATGGGTCAATCTAGTGAAAGCTCGCAG	AABBBFFFFFFFGGGFGGGGGGHHHHHHHHHGHHHHHHHGGHGHHHHHHHHHHGHHHHHHHHFHFGHHHHHHHHHGHGGHFHHHHHHHHHHGFFHHHHHEHHHGHHHHHGDEEGHGHGEGGHHHHHHHHHGHHHFGHHHHHHHFGHHHHHGG?GGGAGHHFFHHFFGG2>@FGGFGFBGGHFHGHHHHHFFF?FGHHGGGGFGEGGHHGGGGHGFGDGHGHHFHEGFHGFGFFHFFHHFHGHFHBFGGF?	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9562
+entry6	69	contig_000000000	304	0	*	=	304	0	GCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAG	BCCCBCBCFFDDGGGGGGGGGGGHGGHHHHHHGHHGGGHHHHHHHHHHHHGGHGGHGGGGGHHHHHHHHHHHHHHHGGGGGHHHHHHHHHHGGGGGHHHGGGGGGDGGHHHHGHHGHHHGHHGGGGGGGHHGGGGGGGGGGAGGGGGGDGAGFGGGGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBEFFFFFFFFFEFFFFFFEFFFFFF	AS:i:0	XS:i:0	MQ:i:49	MC:Z:35M215S	ms:i:9339
+entry5	83	contig_000000000	422	60	250M	=	304	-368	TGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTAATAGAGTGTAAGAGAGTGTCAGAGTGAGTGTGTAAATGGACGCCTATCATTTAGCATGGGTCAATCTAGTGAAAGCTCGCAGCAGCTCTCTAAGTGTCTGGCATTGCAGCAAATTGAGCCGAATGCATTTCTGCACACGTAAACACGGCAGAATACAGATTAGCCAAGCCCAATCTCTCATTAAATCCACATTTAATAGA	.DDFGEAGGGFGFHGHHFFHHHHHHHHHHGCHHHHHHFFHHHHHHHHHHHHHHHHHHGHHFHHHHHHGHHHHHHHHHGHHHHHHHHGGGGGHGHHHFHHHHFHHHHHHHHHGHHHHHHHHHHHEEEEGHHHHHHHGHHHHHHHHHGHGHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHGHFHHHGGGHHHHHHHHHHHHHHGHHGGHHHHHHFHEFCHHGGGGGGGGGGFFFFFFFCCCCC	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9461
+entry7	121	contig_000000000	3891	60	250M	=	3891	0	ACACCACCAGCACCAGCCTAAACCGTTGATACAAGGCAGGATGGATCCGTGCTTTCATGTTGTTGATGCTAAATTCTGACTCACATCTGAATATTCCAGCAGAAATCGAGACTCATCAGAGCAGGCAACGTTTTTACAATCTTTTATTGTCCAATTTTGGTGAGCCTGTGTGAATTGTAGTCTCAGTTTCCTGTTCTTAGCTGACAGGAGTGGCACCCGGTGTGGTCTTCTGCTGCTGTAGCCCATCCGC	99;GFC/0FC;/AFGFC0BDA.?BGFFC0FB9G0C/HHGBFHG:.GFCGEHGHGHFHHHEFHHGBGDF1EHF1GFGGFDFHFHHHFHHG1BG1HHGHHEHGBC>2<2HHHHFHHFHHHHFEGD2EFHHGEF4EHHFFG?/GGF3GFFCE3HGHFHGAHFGF1AGHHGGHHGD5HGF3HF3HHFHHHGHG1FEHHHFHHHEHHGFHHHFHHHHFGGCECEEGHHHGHHHGGGGFGGFFGFFF4BBBBBABB	NM:i:0	AS:i:250	XS:i:0	MC:Z:*	ms:i:4569
+entry7	181	contig_000000000	3891	0	*	=	3891	0	CAGTCACTCGCCTCCCGCTAACAGTCCAACTCTTCTGGTTCATCTGCGAGTCATGGTGTACCGATGTTTTGTTCTCTAGAAAGCGAAAACATTGATATGGCTGAGGGGGGCTAGCAATTTTGGCCTGATAATGGGTGTGAAATATTCAAACTGTTATGATGCTAGCCCAAATAAAACTGTTGGGACTATCTCGGGAAGAAAAATCATGATCAGAGAAGCTAGGAAAGTGTCCTTGGTATGGTAAGCACTG	////-------;----0090;.9/0/000A//::.;.0000::.?@<=0/0=0./00..<..11>00>>0111<?111<////<20GF@212222<1F011B?//<E0FGFB211B1?0/??01BB22210?>?1@222B22@211122B11E@22112110000/B222A222ADB//0FB2DDBA///A/01D11011ADD211D1211BA11A311331D1A10B1FAFB1A1B3111@33111>11	AS:i:0	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8580
+entry8	181	contig_000000000	3891	0	*	=	3891	0	GACGGCGCCTGGAGCGCGTAGGCAAAGCATGATCATCTGAGCACGGCGAACGAGAGTCAGACAAAGGGTTGATCGCCAGTAACGCTCGAGAAAGACACTCCCCCGCAACAACAATCAAACCAACAGTGCACTTTCATTTGCGAATCATGGAATAATGTTGGTTTGGGCTGTAGAAGGCCAAGATATATAAATTGCTGTAGAGGGTTGGGCATGTGGACCGTAAAATGGGTGGGAAGTATAAGAACTTTGT	9;-----/;;--------/;9//////////////////-9------;...C09000;00090/...90.;---./00....-..<.000=0<00..---////1</00211221/B?//122011211111B111//>//2221122222@11>///CE?>/>//1112211111012B22222AD22110011111B/0A///B01111111ABB0013ED10FE1B111333A3333@33D>>1111	AS:i:0	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8542
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_markdup/test-data/6_remove_dups.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,18 @@
+@HD	VN:1.4	SO:coordinate
+@SQ	SN:contig_000000000	LN:11391
+entry1	163	contig_000000000	109	60	250M	=	137	278	GATTGATATTTATTTATTATTTTATTATGTTTATTTCTTTATTTATTATCATTATTATTATTATTCTTATTATTGTTATATAAAAACATCGTAAACACAGTAAACGATAGTACTAATACTACTACTAATAAAGATAGATTTTTTTATATATATATATGTATGATCTTTTAACGTTACTTATTCAAATGCTATGTCATTTTGTAATATTTGTCATGGCAAGTATCAAACTGCTTCGGTTCTCATTGATTAG	1111>DD3DFFF3B333B3FBG3D3A33BG3D3F3333AFG3DF3D33B22D22222222D2B2A2ADE2AA2DAG222BD22D11//11//00B110ABB2FD1?>/>A2@2@2@F2@F21GB11FDDF21111111B2B11>/?1FB22>>>22>B2BG22B12B>F>11/0<0/2B2222B2@G11>22@22@G222201?1??1<?DF1FG1001<1>1F1=11>111>1-....000=0000=00	NM:i:18	AS:i:164	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:6744
+entry2	163	contig_000000000	109	60	250M	=	137	278	TATTGATATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATACAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCATGTATCAAACTGCCTGGGTTATCATTGATTAG	BBBBB5F5DFFFGGGFGGGGGGHHHHHHHHHGHHGHHHHHHHHHHHHGGHHHHHHHEHHGHHGHHFHHHHHGHHHHHFHHHD5A33FBGBFHGGGFGGEGGGBGGAEGAEHH5GD5FEGFD5GGFGHFHE4GHGGHHHHHHHDEEA?FGHHGHGHFBEFFHEGHH4GGHHCFFFHHFHHHHHHBFHG1FFBFF01BGHHHFCFF@1GHHBGGFHFF1?1?FBGGF11FD110FG.<FFGGH1FGH0DG00	NM:i:2	AS:i:240	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9279
+entry3	99	contig_000000000	116	60	250M	=	222	356	ATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAG	BBBBBFFFFFFFGGGGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGHHHHHHHHHHHHHHHHHHGGHGGHGHHHHHGHHHHHHHHHFHHHGHHGHHHHGHHHGGHHHHHHHHHHHHHGHHHHHGHHHHIHHHIIHHHHHHHGHGHHHGHHHHGHHHGHHGHHHHGHHHHHHGHBFFHHHHHHHGHHHGHEHHHFFGGHHHHHHHEHHHFH=GHHHF	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9509
+entry4	163	contig_000000000	116	60	250M	=	222	356	ATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAG	BCCCCFFFFFFFGGGGGGGGGGEHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHGHHGHHHHHEEF5FEGFGFHHGHHFHHHHFHFDEGHAEGHHHFHHFHFFHHGBGGHHFHHFHFHHHGGHGHFGEFHDGGHGHHHHGDHHFFHHGHHHDFDHGHHHHHGHGBHGHHFBDHGGF2FDHHHBGD2@DHHFEHHFFHEC2<FD1GF<DDGHHB0GHAAFFCGGDHHG1FGF0DDGGFH0	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9604
+entry1	83	contig_000000000	137	60	250M	=	109	-278	TTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAGAACCTAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATTTATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCACACTGCCTGGGTTATCATTGATTCGGTACTAGAGATAGTGTTTAAATAATACG	;0C0G;0C0:0FFGDD00D==00000D=00D1D=1DDDF>11=<<1><111<?1<111?1D1??00<>@@11F//0A>2HG>B>2B22222B2FFB2BB22>>2B22BFBEEFGHHG2FGBB22FFB2DB1100F/1FG@G1BHHFGGAGB1DB@22EB00GCEADB1AFHHHGD21BEDF1AF1FA11DAA221BD1AA/EF00FF1FF2EDEBGEA0B03AD3D33AB1A1GEFGEFB3DB31>>11>	NM:i:7	AS:i:222	XS:i:19	MQ:i:60	MC:Z:250M	ms:i:5687
+entry2	83	contig_000000000	137	60	250M	=	109	-278	GTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAG	0GHHHBD0DFGHHHG<D0FD0BD0FHHHG=GGBGG1DGDGHFFGFDHDHGFGAGGHHHGHHHHHHHGGFHHHEGHHGHHGHHGHHHHDBHHHHHHGFGHHHHFHHHFHFG@EBGG4BHGGHHHHHHHHGHHHHHHGHFGBHHHHHHHHHHFHFFHHHHEHFHHHHHHGAFHHHFGHHG2HFHHHGHHHHHHHGHEHHHHGEHGHGHHHHGHHHHHHHHHHHHHGFGHFGFGGGGGGGGFFFFFDFBBBBB	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8804
+entry3	147	contig_000000000	222	60	250M	=	116	-356	TAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGCCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTA	9BGC0FFBGFFGGGGFFGFEGGHGHGCGHHHHGHGGHGHHHGHHHHGHHGGGHHHHFHGHGHHHHHHGHHFHHHHHHHHHGHHHHGHHGHHHHG2HHGFHHGHHHHHHDFHHHGGHHGHGHHHFHHDHHHHHHHHHHHHFHHHHHGHHHHHHHHHHHHFFHHHHGHHHHHHFHHHHHHHHHHHHHHGCGGGHHHGGGGGGGGGGGGGGGHHHHHGHHHHHHHHHHHHHGGGGGGGGGGFFFFFFFBBBBB	NM:i:1	AS:i:245	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9634
+entry4	83	contig_000000000	222	60	250M	=	116	-356	TAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGTCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTA	GGGGGGGGGGGGGGGGGFFGHHHHHGGHHGHHHHGFHHHHGHHHHHHHHHGGHHFEHHHHHHHHHGGHHHHHHHHHHHFHHGFHGHHHGFFHFHHHHHHHHHFHHEHHHHHHHGGHHGHGHHHHHHHHHFGGHHHHHHGFHFHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHGHHHHHHHHHHHGGGGGHHHGGGGGGGGGGGGGGGHHHHHHHGHHHHHGHHHHHGGGGGGGGGGFFFFFFFACCBB	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9217
+entry5	163	contig_000000000	304	60	250M	=	422	368	ATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGTCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTAATAGAGTGTAAGAGAGTGTCAGAGTGAGTGTGTAAATGGACGCCTATCATTTAGCATGGGTCAATCTAGTGAAAGCTCGCAG	AABBBFFFFFFFGGGFGGGGGGHHHHHHHHHGHHHHHHHGGHGHHHHHHHHHHGHHHHHHHHFHFGHHHHHHHHHGHGGHFHHHHHHHHHHGFFHHHHHEHHHGHHHHHGDEEGHGHGEGGHHHHHHHHHGHHHFGHHHHHHHFGHHHHHGG?GGGAGHHFFHHFFGG2>@FGGFGFBGGHFHGHHHHHFFF?FGHHGGGGFGEGGHHGGGGHGFGDGHGHHFHEGFHGFGFFHFFHHFHGHFHBFGGF?	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9562
+entry6	69	contig_000000000	304	0	*	=	304	0	GCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAG	BCCCBCBCFFDDGGGGGGGGGGGHGGHHHHHHGHHGGGHHHHHHHHHHHHGGHGGHGGGGGHHHHHHHHHHHHHHHGGGGGHHHHHHHHHHGGGGGHHHGGGGGGDGGHHHHGHHGHHHGHHGGGGGGGHHGGGGGGGGGGAGGGGGGDGAGFGGGGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBEFFFFFFFFFEFFFFFFEFFFFFF	AS:i:0	XS:i:0	MQ:i:49	MC:Z:35M215S	ms:i:9339
+entry6	137	contig_000000000	304	49	35M215S	=	304	0	ATTTTGTAACATTTGTCATGCCAAGTATCAAACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCT	ABBBBFFFFFFFGGGGGGGGGGHHHHHHHHGHGHHHHHHHGHHHGHGHHHHHHFGHHGHHHIHHHHHIHHHHHHHHHGHHHHHHHHGHGGGGGHGGGGGHHHHHHHGG1EGGGGGGFHGGHHHGHGGGGGGHHHHGGCGFHHGHHHHFHEHHHHHHHGGGHHGGGHGEGHGFHGCGCFHHHHHHHGGGGD?FFGA9EFFGCGG?AGGFGGGGGGFFFFFFFFFFFFFFFFFBFFEF?FEBBFED.ACFF0	NM:i:0	AS:i:35	XS:i:0	MC:Z:*	ms:i:9398
+entry5	83	contig_000000000	422	60	250M	=	304	-368	TGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTAATAGAGTGTAAGAGAGTGTCAGAGTGAGTGTGTAAATGGACGCCTATCATTTAGCATGGGTCAATCTAGTGAAAGCTCGCAGCAGCTCTCTAAGTGTCTGGCATTGCAGCAAATTGAGCCGAATGCATTTCTGCACACGTAAACACGGCAGAATACAGATTAGCCAAGCCCAATCTCTCATTAAATCCACATTTAATAGA	.DDFGEAGGGFGFHGHHFFHHHHHHHHHHGCHHHHHHFFHHHHHHHHHHHHHHHHHHGHHFHHHHHHGHHHHHHHHHGHHHHHHHHGGGGGHGHHHFHHHHFHHHHHHHHHGHHHHHHHHHHHEEEEGHHHHHHHGHHHHHHHHHGHGHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHGHFHHHGGGHHHHHHHHHHHHHHGHHGGHHHHHHFHEFCHHGGGGGGGGGGFFFFFFFCCCCC	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9461
+entry7	121	contig_000000000	3891	60	250M	=	3891	0	ACACCACCAGCACCAGCCTAAACCGTTGATACAAGGCAGGATGGATCCGTGCTTTCATGTTGTTGATGCTAAATTCTGACTCACATCTGAATATTCCAGCAGAAATCGAGACTCATCAGAGCAGGCAACGTTTTTACAATCTTTTATTGTCCAATTTTGGTGAGCCTGTGTGAATTGTAGTCTCAGTTTCCTGTTCTTAGCTGACAGGAGTGGCACCCGGTGTGGTCTTCTGCTGCTGTAGCCCATCCGC	99;GFC/0FC;/AFGFC0BDA.?BGFFC0FB9G0C/HHGBFHG:.GFCGEHGHGHFHHHEFHHGBGDF1EHF1GFGGFDFHFHHHFHHG1BG1HHGHHEHGBC>2<2HHHHFHHFHHHHFEGD2EFHHGEF4EHHFFG?/GGF3GFFCE3HGHFHGAHFGF1AGHHGGHHGD5HGF3HF3HHFHHHGHG1FEHHHFHHHEHHGFHHHFHHHHFGGCECEEGHHHGHHHGGGGFGGFFGFFF4BBBBBABB	NM:i:0	AS:i:250	XS:i:0	MC:Z:*	ms:i:4569
+entry7	181	contig_000000000	3891	0	*	=	3891	0	CAGTCACTCGCCTCCCGCTAACAGTCCAACTCTTCTGGTTCATCTGCGAGTCATGGTGTACCGATGTTTTGTTCTCTAGAAAGCGAAAACATTGATATGGCTGAGGGGGGCTAGCAATTTTGGCCTGATAATGGGTGTGAAATATTCAAACTGTTATGATGCTAGCCCAAATAAAACTGTTGGGACTATCTCGGGAAGAAAAATCATGATCAGAGAAGCTAGGAAAGTGTCCTTGGTATGGTAAGCACTG	////-------;----0090;.9/0/000A//::.;.0000::.?@<=0/0=0./00..<..11>00>>0111<?111<////<20GF@212222<1F011B?//<E0FGFB211B1?0/??01BB22210?>?1@222B22@211122B11E@22112110000/B222A222ADB//0FB2DDBA///A/01D11011ADD211D1211BA11A311331D1A10B1FAFB1A1B3111@33111>11	AS:i:0	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8580
+entry8	121	contig_000000000	3891	60	250M	=	3891	0	ACACCACCAGCACCAGCCTAAACCGTTGATACAAGGCAGGATGGATCCGTGCTTTCATGTTGTTGATGCTAAATTCTGACTCACATCTGAATATTCCAGCAGAAATCGAGACTCATCAGAGCAGGCAACGTTTTTACAATCTTTTATTGTCCAATTTTGGTGAGCCTGTGTGAATTGTAGTCTCAGTTTCCTGTTCTTAGCTGACAGGAGTGGCACCCGGTGTGGTCTTCTGCTGCTGTAGCCCATCCGC	99;.9//FFF9/GFB9FBGBC.A.FCFGFGFBHHGB:0GHFCG-AA@CHGC0FFGGC.HC>><BGFFHHGGHEHFHHFGFFGHHGF1?11<1HHG<CFGBFGEHFGFGDHHG2FGEHFHCGGDGGHGFGGFDFHHFHHGGFHGEEHFBGEHHHGGEFHHHHGAGHFE1BFHHHGHGGGFHFHFDDFFCAEFFGEFHHHHHHFHGGBFHFHFFEEA?CEEAHHHHHCGF0CFFGFFF1FFF1AA@DAAA@A	NM:i:0	AS:i:250	XS:i:0	MC:Z:*	ms:i:3281
+entry8	181	contig_000000000	3891	0	*	=	3891	0	GACGGCGCCTGGAGCGCGTAGGCAAAGCATGATCATCTGAGCACGGCGAACGAGAGTCAGACAAAGGGTTGATCGCCAGTAACGCTCGAGAAAGACACTCCCCCGCAACAACAATCAAACCAACAGTGCACTTTCATTTGCGAATCATGGAATAATGTTGGTTTGGGCTGTAGAAGGCCAAGATATATAAATTGCTGTAGAGGGTTGGGCATGTGGACCGTAAAATGGGTGGGAAGTATAAGAACTTTGT	9;-----/;;--------/;9//////////////////-9------;...C09000;00090/...90.;---./00....-..<.000=0<00..---////1</00211221/B?//122011211111B111//>//2221122222@11>///CE?>/>//1112211111012B22222AD22110011111B/0A///B01111111ABB0013ED10FE1B111333A3333@33D>>1111	AS:i:0	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8542
Binary file samtools_markdup/test-data/7_mark_supp_dup.bam has changed
Binary file samtools_markdup/test-data/7_mark_supp_dup.expected.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_markdup/test-data/7_mark_supp_dup.expected.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,25 @@
+@HD	VN:1.4	SO:coordinate
+@SQ	SN:contig_000000000	LN:11391
+@SQ	SN:contig_000000008	LN:29043
+entry1	1187	contig_000000000	109	60	250M	=	137	278	GATTGATATTTATTTATTATTTTATTATGTTTATTTCTTTATTTATTATCATTATTATTATTATTCTTATTATTGTTATATAAAAACATCGTAAACACAGTAAACGATAGTACTAATACTACTACTAATAAAGATAGATTTTTTTATATATATATATGTATGATCTTTTAACGTTACTTATTCAAATGCTATGTCATTTTGTAATATTTGTCATGGCAAGTATCAAACTGCTTCGGTTCTCATTGATTAG	1111>DD3DFFF3B333B3FBG3D3A33BG3D3F3333AFG3DF3D33B22D22222222D2B2A2ADE2AA2DAG222BD22D11//11//00B110ABB2FD1?>/>A2@2@2@F2@F21GB11FDDF21111111B2B11>/?1FB22>>>22>B2BG22B12B>F>11/0<0/2B2222B2@G11>22@22@G222201?1??1<?DF1FG1001<1>1F1=11>111>1-....000=0000=00	NM:i:18	AS:i:164	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:6744
+entry2	163	contig_000000000	109	60	250M	=	137	278	TATTGATATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATACAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCATGTATCAAACTGCCTGGGTTATCATTGATTAG	BBBBB5F5DFFFGGGFGGGGGGHHHHHHHHHGHHGHHHHHHHHHHHHGGHHHHHHHEHHGHHGHHFHHHHHGHHHHHFHHHD5A33FBGBFHGGGFGGEGGGBGGAEGAEHH5GD5FEGFD5GGFGHFHE4GHGGHHHHHHHDEEA?FGHHGHGHFBEFFHEGHH4GGHHCFFFHHFHHHHHHBFHG1FFBFF01BGHHHFCFF@1GHHBGGFHFF1?1?FBGGF11FD110FG.<FFGGH1FGH0DG00	NM:i:2	AS:i:240	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9279
+entry3	99	contig_000000000	116	60	250M	=	222	356	ATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAG	BBBBBFFFFFFFGGGGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGHHHHHHHHHHHHHHHHHHGGHGGHGHHHHHGHHHHHHHHHFHHHGHHGHHHHGHHHGGHHHHHHHHHHHHHGHHHHHGHHHHIHHHIIHHHHHHHGHGHHHGHHHHGHHHGHHGHHHHGHHHHHHGHBFFHHHHHHHGHHHGHEHHHFFGGHHHHHHHEHHHFH=GHHHF	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9509
+entry4	1187	contig_000000000	116	60	250M	=	222	356	ATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAG	BCCCCFFFFFFFGGGGGGGGGGEHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHGHHGHHHHHEEF5FEGFGFHHGHHFHHHHFHFDEGHAEGHHHFHHFHFFHHGBGGHHFHHFHFHHHGGHGHFGEFHDGGHGHHHHGDHHFFHHGHHHDFDHGHHHHHGHGBHGHHFBDHGGF2FDHHHBGD2@DHHFEHHFFHEC2<FD1GF<DDGHHB0GHAAFFCGGDHHG1FGF0DDGGFH0	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9604
+entry1	1107	contig_000000000	137	60	250M	=	109	-278	TTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAGAACCTAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATTTATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCACACTGCCTGGGTTATCATTGATTCGGTACTAGAGATAGTGTTTAAATAATACG	;0C0G;0C0:0FFGDD00D==00000D=00D1D=1DDDF>11=<<1><111<?1<111?1D1??00<>@@11F//0A>2HG>B>2B22222B2FFB2BB22>>2B22BFBEEFGHHG2FGBB22FFB2DB1100F/1FG@G1BHHFGGAGB1DB@22EB00GCEADB1AFHHHGD21BEDF1AF1FA11DAA221BD1AA/EF00FF1FF2EDEBGEA0B03AD3D33AB1A1GEFGEFB3DB31>>11>	NM:i:7	AS:i:222	XS:i:19	MQ:i:60	MC:Z:250M	ms:i:5687
+entry2	83	contig_000000000	137	60	250M	=	109	-278	GTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAG	0GHHHBD0DFGHHHG<D0FD0BD0FHHHG=GGBGG1DGDGHFFGFDHDHGFGAGGHHHGHHHHHHHGGFHHHEGHHGHHGHHGHHHHDBHHHHHHGFGHHHHFHHHFHFG@EBGG4BHGGHHHHHHHHGHHHHHHGHFGBHHHHHHHHHHFHFFHHHHEHFHHHHHHGAFHHHFGHHG2HFHHHGHHHHHHHGHEHHHHGEHGHGHHHHGHHHHHHHHHHHHHGFGHFGFGGGGGGGGFFFFFDFBBBBB	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8804
+entry3	147	contig_000000000	222	60	250M	=	116	-356	TAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGCCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTA	9BGC0FFBGFFGGGGFFGFEGGHGHGCGHHHHGHGGHGHHHGHHHHGHHGGGHHHHFHGHGHHHHHHGHHFHHHHHHHHHGHHHHGHHGHHHHG2HHGFHHGHHHHHHDFHHHGGHHGHGHHHFHHDHHHHHHHHHHHHFHHHHHGHHHHHHHHHHHHFFHHHHGHHHHHHFHHHHHHHHHHHHHHGCGGGHHHGGGGGGGGGGGGGGGHHHHHGHHHHHHHHHHHHHGGGGGGGGGGFFFFFFFBBBBB	NM:i:1	AS:i:245	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9634
+entry4	1107	contig_000000000	222	60	250M	=	116	-356	TAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGTCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTA	GGGGGGGGGGGGGGGGGFFGHHHHHGGHHGHHHHGFHHHHGHHHHHHHHHGGHHFEHHHHHHHHHGGHHHHHHHHHHHFHHGFHGHHHGFFHFHHHHHHHHHFHHEHHHHHHHGGHHGHGHHHHHHHHHFGGHHHHHHGFHFHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHGHHHHHHHHHHHGGGGGHHHGGGGGGGGGGGGGGGHHHHHHHGHHHHHGHHHHHGGGGGGGGGGFFFFFFFACCBB	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9217
+entry5	163	contig_000000000	304	60	250M	=	422	368	ATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGTCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTAATAGAGTGTAAGAGAGTGTCAGAGTGAGTGTGTAAATGGACGCCTATCATTTAGCATGGGTCAATCTAGTGAAAGCTCGCAG	AABBBFFFFFFFGGGFGGGGGGHHHHHHHHHGHHHHHHHGGHGHHHHHHHHHHGHHHHHHHHFHFGHHHHHHHHHGHGGHFHHHHHHHHHHGFFHHHHHEHHHGHHHHHGDEEGHGHGEGGHHHHHHHHHGHHHFGHHHHHHHFGHHHHHGG?GGGAGHHFFHHFFGG2>@FGGFGFBGGHFHGHHHHHFFF?FGHHGGGGFGEGGHHGGGGHGFGDGHGHHFHEGFHGFGFFHFFHHFHGHFHBFGGF?	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9562
+entry6	1093	contig_000000000	304	0	*	=	304	0	GCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAG	BCCCBCBCFFDDGGGGGGGGGGGHGGHHHHHHGHHGGGHHHHHHHHHHHHGGHGGHGGGGGHHHHHHHHHHHHHHHGGGGGHHHHHHHHHHGGGGGHHHGGGGGGDGGHHHHGHHGHHHGHHGGGGGGGHHGGGGGGGGGGAGGGGGGDGAGFGGGGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBEFFFFFFFFFEFFFFFFEFFFFFF	AS:i:0	XS:i:0	MQ:i:49	MC:Z:35M215S	ms:i:9339
+entry6	1161	contig_000000000	304	49	35M215S	=	304	0	ATTTTGTAACATTTGTCATGCCAAGTATCAAACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCT	ABBBBFFFFFFFGGGGGGGGGGHHHHHHHHGHGHHHHHHHGHHHGHGHHHHHHFGHHGHHHIHHHHHIHHHHHHHHHGHHHHHHHHGHGGGGGHGGGGGHHHHHHHGG1EGGGGGGFHGGHHHGHGGGGGGHHHHGGCGFHHGHHHHFHEHHHHHHHGGGHHGGGHGEGHGFHGCGCFHHHHHHHGGGGD?FFGA9EFFGCGG?AGGFGGGGGGFFFFFFFFFFFFFFFFFBFFEF?FEBBFED.ACFF0	NM:i:0	AS:i:35	XS:i:0	MC:Z:*	ms:i:9398
+entry5	83	contig_000000000	422	60	250M	=	304	-368	TGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTAATAGAGTGTAAGAGAGTGTCAGAGTGAGTGTGTAAATGGACGCCTATCATTTAGCATGGGTCAATCTAGTGAAAGCTCGCAGCAGCTCTCTAAGTGTCTGGCATTGCAGCAAATTGAGCCGAATGCATTTCTGCACACGTAAACACGGCAGAATACAGATTAGCCAAGCCCAATCTCTCATTAAATCCACATTTAATAGA	.DDFGEAGGGFGFHGHHFFHHHHHHHHHHGCHHHHHHFFHHHHHHHHHHHHHHHHHHGHHFHHHHHHGHHHHHHHHHGHHHHHHHHGGGGGHGHHHFHHHHFHHHHHHHHHGHHHHHHHHHHHEEEEGHHHHHHHGHHHHHHHHHGHGHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHGHFHHHGGGHHHHHHHHHHHHHHGHHGGHHHHHHFHEFCHHGGGGGGGGGGFFFFFFFCCCCC	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9461
+entry7	121	contig_000000000	3891	60	250M	=	3891	0	ACACCACCAGCACCAGCCTAAACCGTTGATACAAGGCAGGATGGATCCGTGCTTTCATGTTGTTGATGCTAAATTCTGACTCACATCTGAATATTCCAGCAGAAATCGAGACTCATCAGAGCAGGCAACGTTTTTACAATCTTTTATTGTCCAATTTTGGTGAGCCTGTGTGAATTGTAGTCTCAGTTTCCTGTTCTTAGCTGACAGGAGTGGCACCCGGTGTGGTCTTCTGCTGCTGTAGCCCATCCGC	99;GFC/0FC;/AFGFC0BDA.?BGFFC0FB9G0C/HHGBFHG:.GFCGEHGHGHFHHHEFHHGBGDF1EHF1GFGGFDFHFHHHFHHG1BG1HHGHHEHGBC>2<2HHHHFHHFHHHHFEGD2EFHHGEF4EHHFFG?/GGF3GFFCE3HGHFHGAHFGF1AGHHGGHHGD5HGF3HF3HHFHHHGHG1FEHHHFHHHEHHGFHHHFHHHHFGGCECEEGHHHGHHHGGGGFGGFFGFFF4BBBBBABB	NM:i:0	AS:i:250	XS:i:0	MC:Z:*	ms:i:4569
+entry7	181	contig_000000000	3891	0	*	=	3891	0	CAGTCACTCGCCTCCCGCTAACAGTCCAACTCTTCTGGTTCATCTGCGAGTCATGGTGTACCGATGTTTTGTTCTCTAGAAAGCGAAAACATTGATATGGCTGAGGGGGGCTAGCAATTTTGGCCTGATAATGGGTGTGAAATATTCAAACTGTTATGATGCTAGCCCAAATAAAACTGTTGGGACTATCTCGGGAAGAAAAATCATGATCAGAGAAGCTAGGAAAGTGTCCTTGGTATGGTAAGCACTG	////-------;----0090;.9/0/000A//::.;.0000::.?@<=0/0=0./00..<..11>00>>0111<?111<////<20GF@212222<1F011B?//<E0FGFB211B1?0/??01BB22210?>?1@222B22@211122B11E@22112110000/B222A222ADB//0FB2DDBA///A/01D11011ADD211D1211BA11A311331D1A10B1FAFB1A1B3111@33111>11	AS:i:0	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8580
+entry8	1145	contig_000000000	3891	60	250M	=	3891	0	ACACCACCAGCACCAGCCTAAACCGTTGATACAAGGCAGGATGGATCCGTGCTTTCATGTTGTTGATGCTAAATTCTGACTCACATCTGAATATTCCAGCAGAAATCGAGACTCATCAGAGCAGGCAACGTTTTTACAATCTTTTATTGTCCAATTTTGGTGAGCCTGTGTGAATTGTAGTCTCAGTTTCCTGTTCTTAGCTGACAGGAGTGGCACCCGGTGTGGTCTTCTGCTGCTGTAGCCCATCCGC	99;.9//FFF9/GFB9FBGBC.A.FCFGFGFBHHGB:0GHFCG-AA@CHGC0FFGGC.HC>><BGFFHHGGHEHFHHFGFFGHHGF1?11<1HHG<CFGBFGEHFGFGDHHG2FGEHFHCGGDGGHGFGGFDFHHFHHGGFHGEEHFBGEHHHGGEFHHHHGAGHFE1BFHHHGHGGGFHFHFDDFFCAEFFGEFHHHHHHFHGGBFHFHFFEEA?CEEAHHHHHCGF0CFFGFFF1FFF1AA@DAAA@A	NM:i:0	AS:i:250	XS:i:0	MC:Z:*	ms:i:3281
+entry8	1205	contig_000000000	3891	0	*	=	3891	0	GACGGCGCCTGGAGCGCGTAGGCAAAGCATGATCATCTGAGCACGGCGAACGAGAGTCAGACAAAGGGTTGATCGCCAGTAACGCTCGAGAAAGACACTCCCCCGCAACAACAATCAAACCAACAGTGCACTTTCATTTGCGAATCATGGAATAATGTTGGTTTGGGCTGTAGAAGGCCAAGATATATAAATTGCTGTAGAGGGTTGGGCATGTGGACCGTAAAATGGGTGGGAAGTATAAGAACTTTGT	9;-----/;;--------/;9//////////////////-9------;...C09000;00090/...90.;---./00....-..<.000=0<00..---////1</00211221/B?//122011211111B111//>//2221122222@11>///CE?>/>//1112211111012B22222AD22110011111B/0A///B01111111ABB0013ED10FE1B111333A3333@33D>>1111	AS:i:0	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8542
+entry9	1187	contig_000000008	28855	12	54S189M7S	=	28855	189	CAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATGTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGTGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTACTTTGT	BCCBBFFCBCCFGGGGGGGGGGGHHHHHHHHGGGGGHHHHHHHHHHHHF5DGG5BGFDG5GFHFEHF5F553GHA1GEGHFEAFAF5FEGHFHFF1EGGHHHHHGCEFEEGFHFHFHFHHHH4444?44FE4B4?4D44D444433B20/??FH2?/?/32222D2FB//F>2FDHF00???/??CHGGGHFHBGHB<>1<<1DF1D0=<0FDGB0=000</<.G:CHB:.;;000;00CH0;0;0;00;	NM:i:3	AS:i:174	XS:i:159	SA:Z:contig_000000008,28949,+,95M155S,12,1;	MQ:i:30	MC:Z:34S189M27S	ms:i:8529
+entry10	99	contig_000000008	28855	15	54S189M7S	=	28855	189	CAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTACTTTGT	DDECDFFDCCCFGGGGGGGGGGHHHHHHHHHGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHGGGHHHHHHHHHHHEHGHHHHHGHGFFGGHHFHHHHHHHHHHGFEFDFHHHHHHHHHHHHGHFGFHHFEHDGGHCCFEHFHHFHHHHH/FFFHGHHHCCGGGGFHGHGHHHHHHEDDFDHFFHHHHFGHFGFDHDGEDFHHCEECFGHEEFAHFCGH1CF1E1FBFFGF	NM:i:1	AS:i:184	XS:i:164	SA:Z:contig_000000008,28949,+,95M155S,15,1;	MQ:i:32	MC:Z:34S189M27S	ms:i:8035
+entry9	1107	contig_000000008	28855	30	34S189M27S	=	28855	-189	TACTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTACTTTGTTGGGTTGTTTATAACCTTTA	:0FGEEGGGGGGEEHHHHC:00C:CGGGC0GBFGD0<DHFEHHHD=00<<.1<0GFE.FCG1FDF11BHGFCAHFFBFCEGCF</HFDGDHDFFB22GDHFHHG4?3?B?4?4F4FFH?D4BF3/333HHGGEEGBHBHHFFHEHHEGF2HHFEGHGGGHHFHHHFDGBAHHFHHHHHFHFHHFGHHEHHHHGHG5HHGGGGGHGHGHHHHHHHHHHHHHHHGFHHHGGGGGGGGGGGFFFFFFFDDDDD	NM:i:1	AS:i:184	XS:i:145	MQ:i:12	MC:Z:54S189M7S	ms:i:7507
+entry10	147	contig_000000008	28855	32	34S189M27S	=	28855	-189	TGTTTTGTTGGGTTGTTTTTTACATTTATTTAGTTATTTATATTATATCTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTTCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTACTTTGTTGGGTTGTTTATAACCTTTA	<:.:.<.EEA..A:<-000<00000<:000DGFDH0H=0HD00H===.10.11<BCDHGGDGHF11GBFHEFEFGCFF//C/FA?AHEGFDG?B?BD3GG4FHHGDDG4BHDFHEDEF?F4?GB/3B3HGGHGHHHHHHHFHHHHHHFB3HFEGGHGCGHGHHGFGG5BHHHGHFFHHBFGHFHHF5FHHHHHHGDHG2G5FHHGHGHHHHHHHHHHHHHHHGGHHHGGGGGGGGGGGFFFFFFFCDDDC	NM:i:2	AS:i:179	XS:i:137	MQ:i:15	MC:Z:54S189M7S	ms:i:9375
+entry9	3235	contig_000000008	28949	12	95M155H	=	28855	95	CAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGT	BCCBBFFCBCCFGGGGGGGGGGGHHHHHHHHGGGGGHHHHHHHHHHHHF5DGG5BGFDG5GFHFEHF5F553GHA1GEGHFEAFAF5FEGHFHFF	NM:i:1	AS:i:90	XS:i:0	SA:Z:contig_000000008,28855,+,54S189M7S,12,3;
+entry10	2147	contig_000000008	28949	15	95M155H	=	28855	95	CAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGT	DDECDFFDCCCFGGGGGGGGGGHHHHHHHHHGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHGGGHHHHHHHHHHH	NM:i:1	AS:i:90	XS:i:0	SA:Z:contig_000000008,28855,+,54S189M7S,15,1;
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_markdup/test-data/7_mark_supp_dup.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,25 @@
+@HD	VN:1.4	SO:coordinate
+@SQ	SN:contig_000000000	LN:11391
+@SQ	SN:contig_000000008	LN:29043
+entry1	163	contig_000000000	109	60	250M	=	137	278	GATTGATATTTATTTATTATTTTATTATGTTTATTTCTTTATTTATTATCATTATTATTATTATTCTTATTATTGTTATATAAAAACATCGTAAACACAGTAAACGATAGTACTAATACTACTACTAATAAAGATAGATTTTTTTATATATATATATGTATGATCTTTTAACGTTACTTATTCAAATGCTATGTCATTTTGTAATATTTGTCATGGCAAGTATCAAACTGCTTCGGTTCTCATTGATTAG	1111>DD3DFFF3B333B3FBG3D3A33BG3D3F3333AFG3DF3D33B22D22222222D2B2A2ADE2AA2DAG222BD22D11//11//00B110ABB2FD1?>/>A2@2@2@F2@F21GB11FDDF21111111B2B11>/?1FB22>>>22>B2BG22B12B>F>11/0<0/2B2222B2@G11>22@22@G222201?1??1<?DF1FG1001<1>1F1=11>111>1-....000=0000=00	NM:i:18	AS:i:164	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:6744
+entry2	163	contig_000000000	109	60	250M	=	137	278	TATTGATATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATACAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCATGTATCAAACTGCCTGGGTTATCATTGATTAG	BBBBB5F5DFFFGGGFGGGGGGHHHHHHHHHGHHGHHHHHHHHHHHHGGHHHHHHHEHHGHHGHHFHHHHHGHHHHHFHHHD5A33FBGBFHGGGFGGEGGGBGGAEGAEHH5GD5FEGFD5GGFGHFHE4GHGGHHHHHHHDEEA?FGHHGHGHFBEFFHEGHH4GGHHCFFFHHFHHHHHHBFHG1FFBFF01BGHHHFCFF@1GHHBGGFHFF1?1?FBGGF11FD110FG.<FFGGH1FGH0DG00	NM:i:2	AS:i:240	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9279
+entry3	99	contig_000000000	116	60	250M	=	222	356	ATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAG	BBBBBFFFFFFFGGGGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGHHHHHHHHHHHHHHHHHHGGHGGHGHHHHHGHHHHHHHHHFHHHGHHGHHHHGHHHGGHHHHHHHHHHHHHGHHHHHGHHHHIHHHIIHHHHHHHGHGHHHGHHHHGHHHGHHGHHHHGHHHHHHGHBFFHHHHHHHGHHHGHEHHHFFGGHHHHHHHEHHHFH=GHHHF	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9509
+entry4	163	contig_000000000	116	60	250M	=	222	356	ATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAG	BCCCCFFFFFFFGGGGGGGGGGEHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHGHHGHHHHHEEF5FEGFGFHHGHHFHHHHFHFDEGHAEGHHHFHHFHFFHHGBGGHHFHHFHFHHHGGHGHFGEFHDGGHGHHHHGDHHFFHHGHHHDFDHGHHHHHGHGBHGHHFBDHGGF2FDHHHBGD2@DHHFEHHFFHEC2<FD1GF<DDGHHB0GHAAFFCGGDHHG1FGF0DDGGFH0	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9604
+entry1	83	contig_000000000	137	60	250M	=	109	-278	TTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAGAACCTAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATTTATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCACACTGCCTGGGTTATCATTGATTCGGTACTAGAGATAGTGTTTAAATAATACG	;0C0G;0C0:0FFGDD00D==00000D=00D1D=1DDDF>11=<<1><111<?1<111?1D1??00<>@@11F//0A>2HG>B>2B22222B2FFB2BB22>>2B22BFBEEFGHHG2FGBB22FFB2DB1100F/1FG@G1BHHFGGAGB1DB@22EB00GCEADB1AFHHHGD21BEDF1AF1FA11DAA221BD1AA/EF00FF1FF2EDEBGEA0B03AD3D33AB1A1GEFGEFB3DB31>>11>	NM:i:7	AS:i:222	XS:i:19	MQ:i:60	MC:Z:250M	ms:i:5687
+entry2	83	contig_000000000	137	60	250M	=	109	-278	GTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAG	0GHHHBD0DFGHHHG<D0FD0BD0FHHHG=GGBGG1DGDGHFFGFDHDHGFGAGGHHHGHHHHHHHGGFHHHEGHHGHHGHHGHHHHDBHHHHHHGFGHHHHFHHHFHFG@EBGG4BHGGHHHHHHHHGHHHHHHGHFGBHHHHHHHHHHFHFFHHHHEHFHHHHHHGAFHHHFGHHG2HFHHHGHHHHHHHGHEHHHHGEHGHGHHHHGHHHHHHHHHHHHHGFGHFGFGGGGGGGGFFFFFDFBBBBB	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8804
+entry3	147	contig_000000000	222	60	250M	=	116	-356	TAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGCCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTA	9BGC0FFBGFFGGGGFFGFEGGHGHGCGHHHHGHGGHGHHHGHHHHGHHGGGHHHHFHGHGHHHHHHGHHFHHHHHHHHHGHHHHGHHGHHHHG2HHGFHHGHHHHHHDFHHHGGHHGHGHHHFHHDHHHHHHHHHHHHFHHHHHGHHHHHHHHHHHHFFHHHHGHHHHHHFHHHHHHHHHHHHHHGCGGGHHHGGGGGGGGGGGGGGGHHHHHGHHHHHHHHHHHHHGGGGGGGGGGFFFFFFFBBBBB	NM:i:1	AS:i:245	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9634
+entry4	83	contig_000000000	222	60	250M	=	116	-356	TAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGTCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTA	GGGGGGGGGGGGGGGGGFFGHHHHHGGHHGHHHHGFHHHHGHHHHHHHHHGGHHFEHHHHHHHHHGGHHHHHHHHHHHFHHGFHGHHHGFFHFHHHHHHHHHFHHEHHHHHHHGGHHGHGHHHHHHHHHFGGHHHHHHGFHFHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHGHHHHHHHHHHHGGGGGHHHGGGGGGGGGGGGGGGHHHHHHHGHHHHHGHHHHHGGGGGGGGGGFFFFFFFACCBB	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9217
+entry5	163	contig_000000000	304	60	250M	=	422	368	ATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGTCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTAATAGAGTGTAAGAGAGTGTCAGAGTGAGTGTGTAAATGGACGCCTATCATTTAGCATGGGTCAATCTAGTGAAAGCTCGCAG	AABBBFFFFFFFGGGFGGGGGGHHHHHHHHHGHHHHHHHGGHGHHHHHHHHHHGHHHHHHHHFHFGHHHHHHHHHGHGGHFHHHHHHHHHHGFFHHHHHEHHHGHHHHHGDEEGHGHGEGGHHHHHHHHHGHHHFGHHHHHHHFGHHHHHGG?GGGAGHHFFHHFFGG2>@FGGFGFBGGHFHGHHHHHFFF?FGHHGGGGFGEGGHHGGGGHGFGDGHGHHFHEGFHGFGFFHFFHHFHGHFHBFGGF?	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9562
+entry6	69	contig_000000000	304	0	*	=	304	0	GCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAG	BCCCBCBCFFDDGGGGGGGGGGGHGGHHHHHHGHHGGGHHHHHHHHHHHHGGHGGHGGGGGHHHHHHHHHHHHHHHGGGGGHHHHHHHHHHGGGGGHHHGGGGGGDGGHHHHGHHGHHHGHHGGGGGGGHHGGGGGGGGGGAGGGGGGDGAGFGGGGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBEFFFFFFFFFEFFFFFFEFFFFFF	AS:i:0	XS:i:0	MQ:i:49	MC:Z:35M215S	ms:i:9339
+entry6	137	contig_000000000	304	49	35M215S	=	304	0	ATTTTGTAACATTTGTCATGCCAAGTATCAAACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCT	ABBBBFFFFFFFGGGGGGGGGGHHHHHHHHGHGHHHHHHHGHHHGHGHHHHHHFGHHGHHHIHHHHHIHHHHHHHHHGHHHHHHHHGHGGGGGHGGGGGHHHHHHHGG1EGGGGGGFHGGHHHGHGGGGGGHHHHGGCGFHHGHHHHFHEHHHHHHHGGGHHGGGHGEGHGFHGCGCFHHHHHHHGGGGD?FFGA9EFFGCGG?AGGFGGGGGGFFFFFFFFFFFFFFFFFBFFEF?FEBBFED.ACFF0	NM:i:0	AS:i:35	XS:i:0	MC:Z:*	ms:i:9398
+entry5	83	contig_000000000	422	60	250M	=	304	-368	TGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTAATAGAGTGTAAGAGAGTGTCAGAGTGAGTGTGTAAATGGACGCCTATCATTTAGCATGGGTCAATCTAGTGAAAGCTCGCAGCAGCTCTCTAAGTGTCTGGCATTGCAGCAAATTGAGCCGAATGCATTTCTGCACACGTAAACACGGCAGAATACAGATTAGCCAAGCCCAATCTCTCATTAAATCCACATTTAATAGA	.DDFGEAGGGFGFHGHHFFHHHHHHHHHHGCHHHHHHFFHHHHHHHHHHHHHHHHHHGHHFHHHHHHGHHHHHHHHHGHHHHHHHHGGGGGHGHHHFHHHHFHHHHHHHHHGHHHHHHHHHHHEEEEGHHHHHHHGHHHHHHHHHGHGHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHGHFHHHGGGHHHHHHHHHHHHHHGHHGGHHHHHHFHEFCHHGGGGGGGGGGFFFFFFFCCCCC	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9461
+entry7	121	contig_000000000	3891	60	250M	=	3891	0	ACACCACCAGCACCAGCCTAAACCGTTGATACAAGGCAGGATGGATCCGTGCTTTCATGTTGTTGATGCTAAATTCTGACTCACATCTGAATATTCCAGCAGAAATCGAGACTCATCAGAGCAGGCAACGTTTTTACAATCTTTTATTGTCCAATTTTGGTGAGCCTGTGTGAATTGTAGTCTCAGTTTCCTGTTCTTAGCTGACAGGAGTGGCACCCGGTGTGGTCTTCTGCTGCTGTAGCCCATCCGC	99;GFC/0FC;/AFGFC0BDA.?BGFFC0FB9G0C/HHGBFHG:.GFCGEHGHGHFHHHEFHHGBGDF1EHF1GFGGFDFHFHHHFHHG1BG1HHGHHEHGBC>2<2HHHHFHHFHHHHFEGD2EFHHGEF4EHHFFG?/GGF3GFFCE3HGHFHGAHFGF1AGHHGGHHGD5HGF3HF3HHFHHHGHG1FEHHHFHHHEHHGFHHHFHHHHFGGCECEEGHHHGHHHGGGGFGGFFGFFF4BBBBBABB	NM:i:0	AS:i:250	XS:i:0	MC:Z:*	ms:i:4569
+entry7	181	contig_000000000	3891	0	*	=	3891	0	CAGTCACTCGCCTCCCGCTAACAGTCCAACTCTTCTGGTTCATCTGCGAGTCATGGTGTACCGATGTTTTGTTCTCTAGAAAGCGAAAACATTGATATGGCTGAGGGGGGCTAGCAATTTTGGCCTGATAATGGGTGTGAAATATTCAAACTGTTATGATGCTAGCCCAAATAAAACTGTTGGGACTATCTCGGGAAGAAAAATCATGATCAGAGAAGCTAGGAAAGTGTCCTTGGTATGGTAAGCACTG	////-------;----0090;.9/0/000A//::.;.0000::.?@<=0/0=0./00..<..11>00>>0111<?111<////<20GF@212222<1F011B?//<E0FGFB211B1?0/??01BB22210?>?1@222B22@211122B11E@22112110000/B222A222ADB//0FB2DDBA///A/01D11011ADD211D1211BA11A311331D1A10B1FAFB1A1B3111@33111>11	AS:i:0	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8580
+entry8	121	contig_000000000	3891	60	250M	=	3891	0	ACACCACCAGCACCAGCCTAAACCGTTGATACAAGGCAGGATGGATCCGTGCTTTCATGTTGTTGATGCTAAATTCTGACTCACATCTGAATATTCCAGCAGAAATCGAGACTCATCAGAGCAGGCAACGTTTTTACAATCTTTTATTGTCCAATTTTGGTGAGCCTGTGTGAATTGTAGTCTCAGTTTCCTGTTCTTAGCTGACAGGAGTGGCACCCGGTGTGGTCTTCTGCTGCTGTAGCCCATCCGC	99;.9//FFF9/GFB9FBGBC.A.FCFGFGFBHHGB:0GHFCG-AA@CHGC0FFGGC.HC>><BGFFHHGGHEHFHHFGFFGHHGF1?11<1HHG<CFGBFGEHFGFGDHHG2FGEHFHCGGDGGHGFGGFDFHHFHHGGFHGEEHFBGEHHHGGEFHHHHGAGHFE1BFHHHGHGGGFHFHFDDFFCAEFFGEFHHHHHHFHGGBFHFHFFEEA?CEEAHHHHHCGF0CFFGFFF1FFF1AA@DAAA@A	NM:i:0	AS:i:250	XS:i:0	MC:Z:*	ms:i:3281
+entry8	181	contig_000000000	3891	0	*	=	3891	0	GACGGCGCCTGGAGCGCGTAGGCAAAGCATGATCATCTGAGCACGGCGAACGAGAGTCAGACAAAGGGTTGATCGCCAGTAACGCTCGAGAAAGACACTCCCCCGCAACAACAATCAAACCAACAGTGCACTTTCATTTGCGAATCATGGAATAATGTTGGTTTGGGCTGTAGAAGGCCAAGATATATAAATTGCTGTAGAGGGTTGGGCATGTGGACCGTAAAATGGGTGGGAAGTATAAGAACTTTGT	9;-----/;;--------/;9//////////////////-9------;...C09000;00090/...90.;---./00....-..<.000=0<00..---////1</00211221/B?//122011211111B111//>//2221122222@11>///CE?>/>//1112211111012B22222AD22110011111B/0A///B01111111ABB0013ED10FE1B111333A3333@33D>>1111	AS:i:0	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:8542
+entry9	163	contig_000000008	28855	12	54S189M7S	=	28855	189	CAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATGTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGTGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTACTTTGT	BCCBBFFCBCCFGGGGGGGGGGGHHHHHHHHGGGGGHHHHHHHHHHHHF5DGG5BGFDG5GFHFEHF5F553GHA1GEGHFEAFAF5FEGHFHFF1EGGHHHHHGCEFEEGFHFHFHFHHHH4444?44FE4B4?4D44D444433B20/??FH2?/?/32222D2FB//F>2FDHF00???/??CHGGGHFHBGHB<>1<<1DF1D0=<0FDGB0=000</<.G:CHB:.;;000;00CH0;0;0;00;	NM:i:3	AS:i:174	XS:i:159	SA:Z:contig_000000008,28949,+,95M155S,12,1;	MQ:i:30	MC:Z:34S189M27S	ms:i:8529
+entry10	99	contig_000000008	28855	15	54S189M7S	=	28855	189	CAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTACTTTGT	DDECDFFDCCCFGGGGGGGGGGHHHHHHHHHGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHGGGHHHHHHHHHHHEHGHHHHHGHGFFGGHHFHHHHHHHHHHGFEFDFHHHHHHHHHHHHGHFGFHHFEHDGGHCCFEHFHHFHHHHH/FFFHGHHHCCGGGGFHGHGHHHHHHEDDFDHFFHHHHFGHFGFDHDGEDFHHCEECFGHEEFAHFCGH1CF1E1FBFFGF	NM:i:1	AS:i:184	XS:i:164	SA:Z:contig_000000008,28949,+,95M155S,15,1;	MQ:i:32	MC:Z:34S189M27S	ms:i:8035
+entry9	83	contig_000000008	28855	30	34S189M27S	=	28855	-189	TACTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTACTTTGTTGGGTTGTTTATAACCTTTA	:0FGEEGGGGGGEEHHHHC:00C:CGGGC0GBFGD0<DHFEHHHD=00<<.1<0GFE.FCG1FDF11BHGFCAHFFBFCEGCF</HFDGDHDFFB22GDHFHHG4?3?B?4?4F4FFH?D4BF3/333HHGGEEGBHBHHFFHEHHEGF2HHFEGHGGGHHFHHHFDGBAHHFHHHHHFHFHHFGHHEHHHHGHG5HHGGGGGHGHGHHHHHHHHHHHHHHHGFHHHGGGGGGGGGGGFFFFFFFDDDDD	NM:i:1	AS:i:184	XS:i:145	MQ:i:12	MC:Z:54S189M7S	ms:i:7507
+entry10	147	contig_000000008	28855	32	34S189M27S	=	28855	-189	TGTTTTGTTGGGTTGTTTTTTACATTTATTTAGTTATTTATATTATATCTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTTCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTACTTTGTTGGGTTGTTTATAACCTTTA	<:.:.<.EEA..A:<-000<00000<:000DGFDH0H=0HD00H===.10.11<BCDHGGDGHF11GBFHEFEFGCFF//C/FA?AHEGFDG?B?BD3GG4FHHGDDG4BHDFHEDEF?F4?GB/3B3HGGHGHHHHHHHFHHHHHHFB3HFEGGHGCGHGHHGFGG5BHHHGHFFHHBFGHFHHF5FHHHHHHGDHG2G5FHHGHGHHHHHHHHHHHHHHHGGHHHGGGGGGGGGGGFFFFFFFCDDDC	NM:i:2	AS:i:179	XS:i:137	MQ:i:15	MC:Z:54S189M7S	ms:i:9375
+entry9	2211	contig_000000008	28949	12	95M155H	=	28855	95	CAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGT	BCCBBFFCBCCFGGGGGGGGGGGHHHHHHHHGGGGGHHHHHHHHHHHHF5DGG5BGFDG5GFHFEHF5F553GHA1GEGHFEAFAF5FEGHFHFF	NM:i:1	AS:i:90	XS:i:0	SA:Z:contig_000000008,28855,+,54S189M7S,12,3;
+entry10	2147	contig_000000008	28949	15	95M155H	=	28855	95	CAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGT	DDECDFFDCCCFGGGGGGGGGGHHHHHHHHHGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHGGGHHHHHHHHHHH	NM:i:1	AS:i:90	XS:i:0	SA:Z:contig_000000008,28855,+,54S189M7S,15,1;
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_merge/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
Binary file samtools_merge/test-data/2.merge.expected-samin.bam has changed
Binary file samtools_merge/test-data/2.merge.expected.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_merge/test-data/2.merge.expected.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,67 @@
+@HD	VN:1.4
+@SQ	SN:insert	LN:599
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+@SQ	SN:ref3	LN:4
+@RG	ID:fish	PG:donkey
+@RG	ID:cow	PU:13_&^&&*(:332
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@RG	ID:fish-55424A4	PG:llama
+@RG	ID:cow-3A2CCEF5	PU:13_&^&&*(:332	PG:donkey-4861F4EF
+@RG	PU:*9u8jkjjkjd:	ID:colt-6ADB4A65
+@RG	ID:fish-39E5EF
+@RG	ID:cow-1802EEEC	PU:13_&^&&*(:332
+@RG	PU:*9u8jkjjkjd:	ID:colt-7EC68B3F
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
+@PG	ID:moose
+@PG	PP:moose	ID:cow
+@PG	ID:llama
+@PG	ID:bull-2B019719	PP:donkey-4861F4EF
+@PG	ID:donkey-4861F4EF
+@PG	ID:bull-60104A41	PP:donkey-2EE20DF8
+@PG	ID:donkey-2EE20DF8
+@CO	
+@CO	Do you know?
+@CO	Do you know?
+@CO	Another comment from test_input_1_c
+r000	99	insert	50	30	10M	=	80	30	ATTTAGCTAC	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r000	211	insert	80	30	10M	=	50	-30	CCCAATCATT	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r001	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:fish
+r005	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:colt-6ADB4A65	PG:Z:donkey-4861F4EF
+r008	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:colt-7EC68B3F	PG:Z:donkey-2EE20DF8
+r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10
+r003	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:cow
+r006	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	RG:Z:colt-6ADB4A65	PG:Z:donkey-4861F4EF
+r007	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:colt-6ADB4A65	PG:Z:donkey-4861F4EF
+r009	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	RG:Z:colt-7EC68B3F	PG:Z:donkey-2EE20DF8
+r010	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:colt-7EC68B3F	PG:Z:donkey-2EE20DF8
+r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt
+r007	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt-6ADB4A65	PG:Z:donkey-4861F4EF
+r010	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt-7EC68B3F	PG:Z:donkey-2EE20DF8
+r003	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:cow
+r006	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:colt-6ADB4A65	PG:Z:donkey-4861F4EF
+r009	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:colt-7EC68B3F	PG:Z:donkey-2EE20DF8
+r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:fish
+r005	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:colt-6ADB4A65	PG:Z:donkey-4861F4EF
+r008	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:colt-7EC68B3F	PG:Z:donkey-2EE20DF8
+x1	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:colt	PG:Z:bull
+x7	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:cow-3A2CCEF5	PG:Z:bull-2B019719
+x10	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:cow-1802EEEC	PG:Z:bull-60104A41
+x2	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:colt	PG:Z:bull
+x8	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:cow-3A2CCEF5	PG:Z:bull-2B019719
+x11	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:cow-1802EEEC	PG:Z:bull-60104A41
+x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:fish	PG:Z:bull
+x9	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:cow-3A2CCEF5	PG:Z:bull-2B019719
+x12	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:cow-1802EEEC	PG:Z:bull-60104A41
+x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:fish	PG:Z:bull
+x10	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:cow-3A2CCEF5	PG:Z:bull-2B019719
+x13	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:cow-1802EEEC	PG:Z:bull-60104A41
+x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:fish	PG:Z:bull
+x11	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:cow-3A2CCEF5	PG:Z:bull-2B019719
+x14	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:cow-1802EEEC	PG:Z:bull-60104A41
+x6	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow
+x12	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow-3A2CCEF5	PG:Z:bull-2B019719
+x15	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow-1802EEEC	PG:Z:bull-60104A41
+u1	4	*	0	30	23M	*	0	0	TAATTAAGTCTACAGAAAAAAAA	???????????????????????
+u2	4	*	0	30	*	*	0	0	TAATTAAGTCTACAGAAAAAAAA	???????????????????????
Binary file samtools_merge/test-data/4.merge.expected.bam has changed
Binary file samtools_merge/test-data/6.merge.expected.bam has changed
Binary file samtools_merge/test-data/7.merge.expected.bam has changed
Binary file samtools_merge/test-data/test_input_1_a.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_merge/test-data/test_input_1_a.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,28 @@
+@HD	VN:1.4
+@SQ	SN:insert	LN:599
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+@SQ	SN:ref3	LN:4
+@RG	ID:fish	PG:donkey
+@RG	ID:cow	PU:13_&^&&*(:332
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
+@PG	ID:moose
+@PG	PP:moose	ID:cow
+@CO	
+r000	99	insert	50	30	10M	=	80	30	ATTTAGCTAC	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r000	211	insert	80	30	10M	=	50	-30	CCCAATCATT	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r001	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:fish	PG:Z:donkey
+r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	PG:Z:donkey
+r003	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:cow
+r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt	PG:Z:donkey
+r003	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:cow	PG:Z:donkey
+r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:fish	PG:Z:donkey
+x1	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:colt	PG:Z:bull
+x2	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:colt	PG:Z:bull
+x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:fish	PG:Z:bull
+x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:fish	PG:Z:bull
+x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:fish	PG:Z:bull
+x6	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow
+u1	4	*	0	30	23M	*	0	0	TAATTAAGTCTACAGAAAAAAAA	???????????????????????
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_merge/test-data/test_input_1_a_regex.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,28 @@
+@HD	VN:1.4
+@SQ	SN:insert	LN:599
+@SQ	SN:ref1|this=that	LN:45
+@SQ	SN:ref2*HLA:1a:2:b	LN:40
+@SQ	SN:ref3	LN:4
+@RG	ID:fish	PG:donkey
+@RG	ID:cow	PU:13_&^&&*(:332
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
+@PG	ID:moose
+@PG	PP:moose	ID:cow
+@CO	
+r000	99	insert	50	30	10M	=	80	30	ATTTAGCTAC	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r000	211	insert	80	30	10M	=	50	-30	CCCAATCATT	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r001	163	ref1|this=that	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:fish	PG:Z:colt
+r002	0	ref1|this=that	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	PG:Z:colt
+r003	0	ref1|this=that	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:cow
+r004	0	ref1|this=that	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt	PG:Z:colt
+r003	16	ref1|this=that	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:cow	PG:Z:colt
+r001	83	ref1|this=that	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:fish	PG:Z:colt
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+x2	0	ref2*HLA:1a:2:b	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:colt	PG:Z:bull
+x3	0	ref2*HLA:1a:2:b	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:fish	PG:Z:bull
+x4	0	ref2*HLA:1a:2:b	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:fish	PG:Z:bull
+x5	0	ref2*HLA:1a:2:b	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:fish	PG:Z:bull
+x6	0	ref2*HLA:1a:2:b	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow
+u1	4	*	0	30	23M	*	0	0	TAATTAAGTCTACAGAAAAAAAA	???????????????????????
Binary file samtools_merge/test-data/test_input_1_b.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_merge/test-data/test_input_1_b.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,24 @@
+@HD	VN:1.4
+@SQ	SN:insert	LN:599
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+@SQ	SN:ref3	LN:4
+@PG	ID:llama
+@RG	ID:fish	PG:llama
+@RG	ID:cow	PU:13_&^&&*(:332	PG:donkey
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
+@CO	Do you know?
+r005	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:colt	PG:Z:donkey
+r006	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	RG:Z:colt	PG:Z:donkey
+r007	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:colt	PG:Z:donkey
+r007	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt	PG:Z:donkey
+r006	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:colt	PG:Z:donkey
+r005	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:colt	PG:Z:donkey
+x7	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:cow	PG:Z:bull
+x8	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:cow	PG:Z:bull
+x9	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:cow	PG:Z:bull
+x10	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:cow	PG:Z:bull
+x11	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:cow	PG:Z:bull
+x12	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow	PG:Z:bull
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_merge/test-data/test_input_1_b_regex.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,24 @@
+@HD	VN:1.4
+@SQ	SN:insert	LN:599
+@SQ	SN:ref2*HLA:1a:2:b	LN:40
+@SQ	SN:ref3	LN:4
+@SQ	SN:ref1	LN:45
+@PG	ID:llama_{a}
+@RG	ID:fish-[1]	PG:llama_{a}
+@RG	ID:cow-[2]	PU:13_&^&&*(:332	PG:donkey
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
+@CO	Do you know?
+x7	0	ref2*HLA:1a:2:b	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:cow-[2]	PG:Z:bull
+x8	0	ref2*HLA:1a:2:b	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:cow-[2]	PG:Z:bull
+x9	0	ref2*HLA:1a:2:b	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:cow-[2]	PG:Z:bull
+x10	0	ref2*HLA:1a:2:b	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:cow-[2]	PG:Z:bull
+x11	0	ref2*HLA:1a:2:b	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:cow-[2]	PG:Z:bull
+x12	0	ref2*HLA:1a:2:b	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow-[2]	PG:Z:bull
+r005	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:colt	PG:Z:donkey
+r006	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	RG:Z:colt	PG:Z:donkey
+r007	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:colt	PG:Z:donkey
+r007	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt	PG:Z:donkey
+r006	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:colt	PG:Z:donkey
+r005	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:colt	PG:Z:donkey
Binary file samtools_merge/test-data/test_input_1_c.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_merge/test-data/test_input_1_c.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,23 @@
+@HD	VN:1.4
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+@RG	ID:fish
+@RG	ID:cow	PU:13_&^&&*(:332
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
+@CO	Do you know?
+@CO	Another comment from test_input_1_c
+r008	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:colt	PG:Z:donkey
+r009	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	RG:Z:colt	PG:Z:donkey
+r010	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:colt	PG:Z:donkey
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+r009	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:colt	PG:Z:donkey
+r008	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:colt	PG:Z:donkey
+x10	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:cow	PG:Z:bull
+x11	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:cow	PG:Z:bull
+x12	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:cow	PG:Z:bull
+x13	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:cow	PG:Z:bull
+x14	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:cow	PG:Z:bull
+x15	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow	PG:Z:bull
+u2	4	*	0	30	*	*	0	0	TAATTAAGTCTACAGAAAAAAAA	???????????????????????
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_mpileup/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
Binary file samtools_mpileup/test-data/mpileup.1.bam has changed
Binary file samtools_mpileup/test-data/mpileup.2.bam has changed
Binary file samtools_mpileup/test-data/mpileup.3.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_mpileup/test-data/mpileup.out.1	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,51 @@
+17	100	C	9	.........	JLJMLLGG4	3	...	DmH	5	.....	HIJ?G
+17	101	C	9	.........	HFLJKMH97	3	...	Aq5	5	.....	FEIEG
+17	102	C	9	.........	FKKLLLKF5	3	...	GpA	5	.....	HHIJG
+17	103	T	8	........	KLLLMLKG	3	...	Fu;	5	.....	MIMHI
+17	104	G	8	........	;HLGKLIH	2	..	Dp	5	.....	ICHCI
+17	105	G	9	........^].	HB6KKKG8;	3	...	Cj0	5	.....	GBCAH
+17	106	G	10	..........	GMKKIKJE2>	2	..	@i	5	.....	GCF5J
+17	107	C	9	.........	IKMKLJKI?	3	...	Gm;	5	.....	JGH?K
+17	108	C	9	.........	HGKLLKLG?	3	...	Fq<	5	.....	IFGBK
+17	109	T	9	.........	ILLOLJJFB	3	...	FvI	5	.....	JJMLL
+17	110	G	9	.........	JJMMKLIHD	3	...	?t?	5	.....	IDFII
+17	111	G	10	..........	G77HJJBA/C	2	..	Cr	4	....	GCHK
+17	112	C	9	.........	IKILKKLI?	3	...	6t;	5	.....	J?IEJ
+17	113	A	9	.........	CGIFIGJE?	2	..	Bs	5	.....	JBJJI
+17	114	C	9	.........	IDGIJJIHB	3	...	Ar;	5	.....	GEDHI
+17	115	C	10	..........	EJJILNGF/A	2	..	Ds	6	.....^].	HFHIH?
+17	116	A	9	.........	DHGJJJIHF	2	..	Ev	7	......,	F8JGIGG
+17	117	G	9	.$........	>BJIMIFJF	2	..	@t	7	......,	H>IFJDD
+17	118	G	9	.........	BFKLJGF/A	1	.	s	7	......,	A>CEECE
+17	119	G	8	........	F?HLKJGG	2	..	s1	7	......,	A1ABLCB
+17	120	A	8	........	FCIIKHGJ	2	..	w=	7	......,	E;I@GIE
+17	121	G	8	........	GFMMMG@H	2	..	u9	7	......,	A<DBJGB
+17	122	C	8	.$.......	DEIKLLJI	3	..^].	u2C	7	.$.....,	E=JGKFH
+17	123	T	7	.......	EMKIEFH	3	...	y>I	6	.....,	EJ;LKK
+17	124	T	9	.$.......^].	?HEIE?/7>	3	...	q6F	6	.....,	?FBCGI
+17	125	A	7	.......	DHICDGA	3	...	s6F	6	.....,	CIBHFD
+17	126	A	8	........	JEKAG0GB	3	...	p6I	6	.....,	GHEMKC
+17	127	C	8	........	JGGJG/DD	3	...	p@E	6	.....,	?GDHGI
+17	128	A	8	........	HJIIE8IE	3	...	rFG	6	.$....,	>GGJHF
+17	129	A	8	........	HFKJD8IC	3	...	oCJ	5	....,	IIMKD
+17	130	A	8	......$..	IJKCE8JD	3	...	kHJ	5	....,	BEMKI
+17	131	C	7	.......	JKKFGGG	3	...	jCF	5	....,	BDKHF
+17	132	A	7	.......	JGKJGKF	3	.$..	nIF	5	....,	HGJGG
+17	133	T	7	.......	GKHIEGE	3	.,.	ELH	5	....,	EGJIK
+17	134	C	7	.......	KLMKKJH	3	.,.	IKI	5	....,	EGJKD
+17	135	T	7	.......	JLKLHIG	3	.,.	HJK	5	.$...,	DLLJ?
+17	136	G	7	.......	IMLGIHH	3	.,.	HKI	5	...,^].	;FIE@
+17	137	T	7	.......	EJHHAHF	3	.,.	IKH	5	...,.	FGIH:
+17	138	C	7	.......	GKMIJIH	3	.,.	ILK	5	...,.	GHKA9
+17	139	C	7	.......	FJK@GFF	3	.,.	CKJ	5	...,.	FLG><
+17	140	A	7	.$......	CIIKFHF	3	.,.	GMI	5	...,.	IKJBE
+17	141	G	6	......	MLCJEJ	3	.,.	DLK	5	...,.	;MHAC
+17	142	C	6	......	LLFIHF	3	.,.	CBJ	5	...,.	AFI;6
+17	143	G	6	......	CAE@B@	3	.,.	:KB	4	...,	3?AG
+17	144	A	6	......	JJJGBG	3	.,.	GJJ	5	...,.	7LCJ<
+17	145	A	6	......	IJCGKG	3	.,.	DIL	5	...,.	<MKH9
+17	146	T	6	......	HJJFFG	3	.,.	GII	5	...,.	?JFI0
+17	147	A	6	......	FIJEID	3	.,.	FEI	5	...,.	FKGA9
+17	148	C	6	......	KKJGHG	3	.,.	DKJ	5	...,.	GHHBC
+17	149	C	6	......	JL3IGH	3	.$,.	?LL	5	...,.	EICE@
+17	150	T	6	......	KJIEEH	2	,.	IM	5	...,.	LIKG?
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_mpileup/test-data/mpileup.out.3	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,11 @@
+17	1050	A	6	.$.....	DGIKIF
+17	1051	A	5	.....	HFJHD
+17	1052	A	5	.....	BIKJB
+17	1053	A	5	.....	GFJGB
+17	1054	C	5	.....	I@JHB
+17	1055	C	7	.....^].^].	HKNK9@A
+17	1056	C	7	.......	HKMK7A@
+17	1057	T	7	.......	JDKJDGF
+17	1058	G	7	.......	HHLKHIH
+17	1059	T	7	.......	EHII?EE
+17	1060	C	7	.......	JJJI=GH
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_mpileup/test-data/mpileup.ref.fa	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,71 @@
+>17 17:1-4200
+AAGCTTCTCACCCTGTTCCTGCATAGATAATTGCATGACAATTGCCTTGTCCCTGCTGAA
+TGTGCTCTGGGGTCTCTGGGGTCTCACCCACGACCAACTCCCTGGGCCTGGCACCAGGGA
+GCTTAACAAACATCTGTCCAGCGAATACCTGCATCCCTAGAAGTGAAGCCACCGCCCAAA
+GACACGCCCATGTCCAGCTTAACCTGCATCCCTAGAAGTGAAGGCACCGCCCAAAGACAC
+GCCCATGTCCAGCTTATTCTGCCCAGTTCCTCTCCAGAAAGGCTGCATGGTTGACACACA
+GTGCCTGCGACAAAGCTGAATGCTATCATTTAAAAACTCCTTGCTGGTTTGAGAGGCAGA
+AAATGATATCTCATAGTTGCTTTACTTTGCATATTTTAAAATTGTGACTTTCATGGCATA
+AATAATACTGGTTTATTACAGAAGCACTAGAAAATGCATGTGGACAAAAGTTGGGATTAG
+GAGAGAGAAATGAAGACATATGTCCACACAAAAACCTGTTCATTGCAGCTTTCTACCATC
+ACCAAAAATTGCAAACAACCACACGCCCTTCAACTGGGGAACTCATCAACAACAAACTTG
+TGGTTTACCCACACAATGGAAGACCACTTAGCAACAAAAAGGACCAAACTCCTGGTACAT
+GCAACTGACAGATGAATCTCAAACGCATTCCTCCGTGTGAAAGAAGCCGGACTCACAGGG
+CAACACACTATCTGACTGTTTCATGGGAAAGTCTGGAAACGGCAACACCATTGAGACAGA
+AAACAGGTGAGTGGTTGCCTGGGGCCAGGGAACTTTCTGGGGTCATATTCTCTGTGTTGA
+TTCTGGTGGTGGAAACAAGACTGTCCCAGCCTGGGTGATACAGCGAGACCCCATCTCTAC
+CAAAAAATTAAAAATTAGCTGGGCATGGTGGTGCATGCCTGTAGTCCCAGCTATTCACAG
+TGCTGAGGTGGGAAGATGCTTGAGCCCAGGAGTTCAAGGCTGCAATGAGCTATGATTGCG
+CCACTGCACTTTGGCCTGGACAACAGAGCAAAACCCTGTCTCTAAAAAAAGAAAAGAAAA
+GAAAAACTCACTGGATATGAATGATACAGGTTGAGGATCCATTATCTGAAATGCTTGGAC
+CAGATGTTTTGAATTTTGGATTTTTTCATATTTTGTAATCTTTGCAGTATATTTACCAGT
+TCAGCATCCCTAACTCAAAAATTCAAAAATCTGAAATCCCAAACGCGCCAATAAGCATTC
+CCTTTGAGCGTCATGTCGGTGCTTGGAATGTTTGGGGTTTTGGATTTACAGCTTTGGGAC
+GCTCAACCTGTACCTCAATAAACCTGATTTTAAAAAAGTTTGGGGGGATTCCCCTAAGCC
+CGCCACCCGGAGACAGCGGATTTCCTTAGTTACTTACTATGCTCCTTGGCCATTTCTCTA
+GGTATTGGTATATTGTGTCTGCTGTGAACTGTCCTTGGCCTGTTTGGTGACGGGTGAGGA
+GCAGGGACAGAAGGGTCCTGCGTGCCCTGCCTTCACAAGCCCCTGGAAGGAAAGTTGTTT
+TGGGATCTCTGCACCCTCAGCCTGGACAACTTGTGCCCATCTGGTGACCCCTCACTCAGC
+CACCAGACTTCCACGACAGGCTCCAGCCTCGGCACCTTCAGCCATGGACAGTTCCGCCAG
+CGTTGCCCTCTGTTCTGCTGTTTTCTCTACCAGAAGTGCCCTTCCCTCCTCACCTGACCA
+CTCTGGGGAAATCCCTCAGCACCCTCCCTGAGCATACCCTACTCTGGCACAAGCCCACCC
+TGCAAAGCCCCTGAGGCCCGCCCTGTGGCGTCTCTCCCTCCCTTGCTGTCAGGACAGTGG
+TCCTGGCCACCGGGGCTCACGGAGCCGCCCTGTGCCGTGTACCTCTGAGCCCTCTGCACA
+GTGCCTTCTGCTTGCCTGTGGCTTTGAGAAGAAACCCCTTCTGGTTATACATAAGACAGC
+CAGAGAAGGGAGTTGCCCAGGGTGGCACAGCACGTTGCTGCCAGTTACTGCCATTTTCAC
+GGGCATGAAATGGAGATAACAACAGGAGCGACCGCACAGGCTGCTGAGCGCGTCACACGC
+AGCCATCGCGCAGCTCAGGGATATTACGTGTAACTCGACATGTCAGCGATTGTCACAGGC
+ACTGCTACTCCTGGGGTTTTCCATCAAACCCTCAAGAGCTGGGCCTGGGGTCAACTTCCG
+GCCTGGGGAAACTGGGGCAAGTATCACCAGAGATGAGCTTTATAAAAATAATGGTGCTAG
+CTGGGCATGGTGGCTTGCACCTGTAATCCCAGCACTTTGGGAGGCCGAGCTAGGAGGATC
+GTTTGAGTCCAGCAGTTTGAGACCAGCCTGGCCAATACGGCAAAACCCAGTCTCTACAAA
+AAATACAAAAAACAACTAGCCAGGCGTGGTGGTGCACACCTGTAGTCCCAGCTACTCAGG
+AGGCTGAGGGGGAAGGACTGCTTGAGCCCAGGAGTTTGAGGCTGCTGTGAGCTGTGATCG
+CATCACTGCATTCCAGCCCGGTGACAGAGTGAGTCACTGTCTCAAAAAAGAAAGGAAGAA
+ATAAAGAAAACAAATAAAAATAATAGTGCAGACAAAAGGCCTTGACCCATCTAGCTTTGG
+CCCTCAGCATCAACCGCTAGATACGTCCCTCCCTTTCTTCTGGGGCACAGGTCACACTCT
+CTTCCAGGTCTAGGATGCAGCTGAGGGGTGCCCCTCTTACCATCTAATCTGTGCCCTTAT
+TTCCTCTGCTTTAGTGAGGAAGAGGCCCCTGGTCCATGAAGGGGCCTTTCAGAGACGGGG
+ACCCCTGAGGAGCCCCGAGCAGCAGCCGTCGTGTCTCACCCAGGGTGTCTGAAACAGATG
+TGGAGGTCTCGGGTGAGGCGTGGCTCAGATACAGGGAGTGGCCCACAGCTCGGCCTGTCT
+TTGAAAGGCCACGTGACCTGGCCCACGGCTGGCAGGTGGGACCCAGCTGCAGGGGTCCAG
+CAGCACCCACAGCAGCCACCTGTGGCAGGGAGGAGCTTGTGGTACAGTGGACAGGCCCTG
+CCCAGATGGCCCCCCGCCTGCCTGTGGAAGTTGACCAGACCATCTGTCACAGCAGGTAAG
+ACTCTGCTTTCTGGGCAACCCAGCAGGTGACCCTGGAATTCCTGTCCATCTGGCAGGTGG
+GCATTGAAACTGGTTTAAAAATGTCACACCATAGGCCGGGCACAGTGGCTCACGCCTGTA
+ATCCCAGCCCTTTGGGAGGCCAGGGTGGGTGGATCACTTGAGGTCAGGAGTTCAAGACCA
+GCCTGGCCAACATGGTGAAACCCCGTCTACTAAAAATACAAAAATTAGCCTGGCGTGGTG
+GCGCATGCCTGTAATCCCAGCTACTTGGGAAGCTGAGGGATGAGAACTGCTTGAACCTGG
+GAGGCAGACGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGT
+AAGACTCTGTCTCAAAAAAAAAAAAATCACACCATTTTGGCTTCAGATTGCATATCCTCC
+TGCAAGGATATATACGCGTGAAATTCAAGTCAATGACAAATCAGAAGAAAAAACATATAT
+ATACGCAAACCAGTATCCTACTGTGTGTGTCGTTTGTTGTGTTTTCGACAGCTGTCCGTG
+TTATAATAATTCCTCTAGTTCAAATTTATTCATTTTTAACTTCATAGTACCACATTCTAC
+ACACTGCCCATGTCCCCTCAAGCTTCCCCTGGCTCCTGCAACCACAAATCTACTCTCTGC
+CTCTGTGGGTTGACCTATTCTGGACACGTCATAGAAATAGAGTCCTGCAACACGTGGCCG
+TCTGTGTCTGGCTTCTCTCGCTTAGCATCTTGTTTCCAAGGTCCTCCCACAGTGTAGCAT
+GCACCTGCTACACTCCTTCTTAGGGCTGATATTCCACGCACCTGCTACACTCCTTCTTAT
+GGCTGATATTCCACGCACCTGCTACACTCCTTCTTAGGGCTGATATTCCACACACCCGCT
+ACACTCCTTCTTAGGGCTGATATTCCACGCACCCGCTACACTCCTTCTTAGGGCTGATAT
+TCCACGCACCTGCTACACTCCTTCTTAGGGCTGATATTCCACGCACCTGCTACACTCCTT
+CTTAGGGCTGATATTCCACGCACCTGCTACACTCCTTCTTAGGGCTGATATTCCACGCAC
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_mpileup/test-data/mpileup.ref.fa.fai	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,1 @@
+17	4200	14	60	61
Binary file samtools_mpileup/test-data/phiX.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_mpileup/test-data/phiX.fasta	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,79 @@
+>phiX174
+GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTT
+GATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAA
+ATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTG
+TCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTA
+GATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC
+TGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTT
+TCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTT
+CGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCT
+TGCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG
+TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTAC
+GGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTA
+CGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAG
+TGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACT
+AAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGC
+CCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA
+TCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGAC
+TCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA
+CTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAA
+GGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTT
+GGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACA
+ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGC
+TCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTT
+TCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC
+ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCGTGATGTTATTTCTTCATTTGGAGGTAAAAC
+CTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTT
+GATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGC
+CGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGAC
+TAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTG
+TATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGT
+TTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGA
+AGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGAT
+TATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTT
+ATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAAC
+GCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGC
+TTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGT
+TCTCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTA
+TATTTTGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTG
+TCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC
+CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTATGATGTTTATCCTTTG
+AATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGC
+CGGGCAATAATGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGT
+TTCGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTG
+CTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAA
+AGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTGATGCT
+GGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTG
+GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGA
+TAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTAT
+CTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG
+TTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA
+GATGCAAAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGAC
+CAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTA
+TGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCA
+AACGGCTGGTCAGTATTTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGAC
+TTAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTCTCATATTGGCGCTACTGCAAAGGATATTT
+CTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGA
+TACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCG
+TCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCGTT
+CTTATTACCCTTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTAT
+TGAGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGC
+ATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATG
+TTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGA
+ATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAGGG
+GACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCC
+CTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATT
+GCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGATGAATGCAATGCGACAG
+GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTT
+ATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCG
+CAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGC
+CGTCTTCATTTCCATGCGGTGCATTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTC
+GTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT
+CGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAG
+CCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA
+TGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACT
+TCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTG
+TCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGC
+AGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACC
+TGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA
+
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_mpileup/test-data/phiX.fasta.fai	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,1 @@
+phiX174	5386	9	70	71
Binary file samtools_mpileup/test-data/phiX_1.bam has changed
Binary file samtools_mpileup/test-data/samtools_mpileup_in_1.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_mpileup/test-data/samtools_mpileup_out_1.pileup	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,43 @@
+phiX174	1411	A	0	*	*	*	*
+phiX174	1412	G	0	*	*	*	*
+phiX174	1413	C	0	*	*	*	*
+phiX174	1414	G	0	*	*	*	*
+phiX174	1415	C	0	*	*	*	*
+phiX174	1416	C	0	*	*	*	*
+phiX174	1417	G	0	*	*	*	*
+phiX174	1418	T	0	*	*	*	*
+phiX174	1419	G	0	*	*	*	*
+phiX174	1420	G	0	*	*	*	*
+phiX174	1421	A	0	*	*	*	*
+phiX174	1422	T	0	*	*	*	*
+phiX174	1423	G	0	*	*	*	*
+phiX174	1424	C	0	*	*	*	*
+phiX174	1425	C	0	*	*	*	*
+phiX174	1426	T	0	*	*	*	*
+phiX174	1427	G	0	*	*	*	*
+phiX174	1428	A	0	*	*	*	*
+phiX174	1429	C	0	*	*	*	*
+phiX174	1430	C	0	*	*	*	*
+phiX174	1431	G	0	*	*	*	*
+phiX174	1432	T	0	*	*	*	*
+phiX174	1433	A	0	*	*	*	*
+phiX174	1434	C	0	*	*	*	*
+phiX174	1435	C	0	*	*	*	*
+phiX174	1436	G	0	*	*	*	*
+phiX174	1437	A	0	*	*	*	*
+phiX174	1438	G	0	*	*	*	*
+phiX174	1439	G	0	*	*	*	*
+phiX174	1440	C	0	*	*	*	*
+phiX174	1441	T	0	*	*	*	*
+phiX174	1442	A	0	*	*	*	*
+phiX174	1443	A	0	*	*	*	*
+phiX174	1444	C	0	*	*	*	*
+phiX174	1445	C	0	*	*	*	*
+phiX174	1446	C	0	*	*	*	*
+phiX174	1447	T	0	*	*	*	*
+phiX174	1448	A	0	*	*	*	*
+phiX174	1449	A	0	*	*	*	*
+phiX174	1450	T	0	*	*	*	*
+phiX174	1451	G	0	*	*	*	*
+phiX174	1452	A	0	*	*	*	*
+phiX174	1453	G	0	*	*	*	*
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_mpileup/test-data/samtools_mpileup_out_2.pileup	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,5385 @@
+phiX174	2	A	1	^K.	2
+phiX174	3	G	2	.^K.	22
+phiX174	4	T	4	..^K.^K.	2222
+phiX174	5	T	6	....^K.^K.	222222
+phiX174	6	T	6	......	222222
+phiX174	7	T	8	......^K.^K.	22222222
+phiX174	8	A	9	........^K.	222222222
+phiX174	9	T	10	.........^K.	2222222222
+phiX174	10	C	10	..........	2222222222
+phiX174	11	G	13	..........^K.^K.^K.	2222222222222
+phiX174	12	C	14	.............^K.	22222222222222
+phiX174	13	T	15	..............^K.	222222222222222
+phiX174	14	T	16	...............^K.	2222222222222222
+phiX174	15	C	16	.........G......	2222222222222222
+phiX174	16	C	18	................^K.^K.	222222222222222222
+phiX174	17	A	22	..................^K.^K.^K.^K.	2222222222222222222222
+phiX174	18	T	23	................A.....^K.	22222222222222222222222
+phiX174	19	G	23	.......................	22222222222222222222222
+phiX174	20	A	23	.......................	22222222222222222222222
+phiX174	21	C	24	.......................^K.	222222222222222222222222
+phiX174	22	G	27	........................^K.^K.^K.	222222222222222222222222222
+phiX174	23	C	28	....................G......^K.	2222222222222222222222222222
+phiX174	24	A	29	............................^K.	22222222222222222222222222222
+phiX174	25	G	30	.............................^K.	222222222222222222222222222222
+phiX174	26	A	32	..............................^K.^K.	22222222222222222222222222222222
+phiX174	27	A	35	................................^K.^K.^K.	22222222222222222222222222222222222
+phiX174	28	G	35	...................................	22222222222222222222222222222222222
+phiX174	29	T	36	.............A.....A...............^K.	222222222222222222222222222222222222
+phiX174	30	T	37	.........A........................A.^K.	2222222222222222222222222222222222222
+phiX174	31	A	39	....................................C^K.^K.	222222222222222222222222222222222222222
+phiX174	32	A	39	.......................................	222222222222222222222222222222222222222
+phiX174	33	C	40	.......................................^K.	2222222222222222222222222222222222222222
+phiX174	34	A	40	.C......................................	2222222222222222222222222222222222222222
+phiX174	35	C	41	........................................^K.	22222222222222222222222222222222222222222
+phiX174	36	T	41	A..............A........A................	22222222222222222222222222222222222222222
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+phiX174	651	C	119	.$.$..,..,,,,.,,..,,.,.,,,,.,.,,...,,.,,,..,,,,....,,,..,..a,....,.,..,..,,,,..,,,...,,...,,,,,....,..,,,,,.,.,,..,,...^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	652	C	120	.$.$,$..,,,,.,,..,,.,.,,,,.,G,,...,,.,,,..,,,,....,,,..,..,,....,.,..,..,,,,..,,,...,,...,,a,,....,..,,,,,.,.,,..,,.....^K.^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	653	C	118	..,,,,.,,..,,.,.,,,,.,.,,...,,.,,,..,,,,....,,,..,..,,....,.,..,..,,,,..,,,...,,...,,,,,....,..,,,,,.,.,,..,,........^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	655	T	126	.$.$,$,$,,.,,..,,.,.g,,,.,.,,...,,.,,,..,,,,....,,,..,A.,,....,.,..,..,,,,..,,,...,,...,,,,,....,..,,,,,.,.,,..,,........,,,^K.^K.^K,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	709	T	127	,$,,,.,.,,..,,........,,,..,,,,,.,,,,...,,.,,,....,,,,,,.,,.....,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,A..,,.,,,,..,,....,,...,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	711	A	129	,$,.,.,,..,,..C.....,,,..,,t,,.,t,t...,,.,,,....,,,,,,.,,.....,.,.,.,,.,t,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	712	T	131	,$.,.,,..,,........,,,..,,,,,.,,,,...,,.,,,....,,,,g,.,,.....,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	713	T	132	.,.,,..,,........,,,..,,,,,.,,,,...,,.,,,....,,,,,,.,,.....,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,g..,,....,,...,,..,,,.,,^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	714	A	136	.$,$.,,..,,....C...,,,..,,,,,.,,,,...,,.,,,....,,,,,,.,,.....,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...t,.,,,,..,,....,,...,,..,,,.,,..^K.^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	715	A	136	.$,$,$C.,,........,,,..,,,,,.,,,,...,,.,,,....,,,,,,.,,.....,.,.,.,,.,,,.t,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	716	T	135	.$.$,$,$........,,,..,,,,,.,,,,...,,.,,,....,,,,,,.,,.....,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,..^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	717	G	133	.$.$...T..c,,..,,,,,.,,,,...,,.,,,....,,c,,,.,,.....,.,.,.,,T,,,.,,.,..,,.,,.,.,,,.,....c,...,,.,,,,..,,....,c...,,..,,,.,,.....,...,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	718	G	131	.$.....,,c..,,,,,.,,c,...,,.,,,....,,,,,,.,,.....,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,T....,...,.,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	719	C	132	.....,,,..,,,,,.,,,,...,,.,,,....,,,,,,.,,.....,.,.,.,,G,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	720	G	132	.$.$...,,,..,,,,,.,,,,...,,.,,,....,,,,c,.,,.....,.,.,.,,.,,,.,,.,..,,.,,.,.c,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	721	T	134	.$.$.$,,,..,,,,,.,,,,...g,.,,,....,,,,,,.,,.....,A,.,.,g.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.g,,,.A,,....,,...,,..,,,.,,.....,...,.,,,^K.^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	722	C	133	,$,,..,,,,,.,,,,...,,.,,,....,,,,,,.,,..G..,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	723	G	133	,$,$..,c,,,.,,,,T..,,.,,,....,,,,,,.,,.....,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,c...,,..,,,.,,.....,T..,.,,,..,,.,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	724	A	132	.$.$,$,$,$,$,.,,,t...,,.,,,....,,,,,,.,,.....,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,.C,,....,,...,,..,,,.,,....C,...,.,,,..,,.,,^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	725	G	126	,$.,,,,...,,T,,,.T..,,,,,,.,,.....,.,.,.,,.,,,.,,.,..,,.,,.,.,c,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	726	C	125	.$,$,,,...,,.,,,....,,,,,,.,,.....,.,.,.,,.,,,.,,.a..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,G..,,..,,,.,,.....,...,.,,,..,,.,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	727	G	124	,$,,...,c.,,,....,,,,,,.,,.....,.,.c.,,.,,,.,,.,..,,.,,.,.,,,.,.T..,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	728	T	126	,$,$...,,.,,,....,,,,,,.,,.....g.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,..A,.,,,..,,.,,,A^K.^I.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	729	C	124	.$.$.$,$,$.,,,....,,,,,,.,,.....,.,.a.,,.,,,.,,.,..,,.,,.,.,,,.,G...,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	730	C	121	.$,$,$,$....,,,,,,.,,.....a.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,G....,...,.,,,..,,.,,,...,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	731	G	117	.$..T,,,,,,.,,.....,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,..T,,.,,,,..,,....,,...,,..,,,.,,.....,...,.c,,..,,.,,,...,.,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	732	G	118	.$..,,,,,,.,,.....,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	733	T	117	.$.$,$,$,$,,,.,,.....,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,g,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	734	T	114	,$,$,.,,.....,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,.A,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	735	A	113	,$.,,.....,.,.,.,,.,,,.,t.,..,,.,,.,.,,,.,....,,...,,.,,,t..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,.,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	736	A	114	.,,.....,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,C,,.....,...,.,,,..,,.,,,...,.,,,.,.^K.^KC	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220
+phiX174	737	A	118	.$,$,$.....,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,.C.,.t,,..,,.,,,...,.,,t..,...^K.^I,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222022222222
+phiX174	738	G	117	.$.$...,.,.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,c.....,...,.,,,..,,.,,,...,.,,,..,T...,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	739	C	116	.$.$.$,.,.,.,,.,,,.,,.,..,,.a,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,..,....,,.,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	740	C	115	,$.,.,.,,.,,a.,,.,..,,.,,.,.,,,.,....,,...,a.,,,,..,,....,,...,,..,,,.,,..G..a...,.a,,..,,.,,,...,.,,,..,....,,.,.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	741	G	117	.$c.,.,,.,,,.,,.,..,,.,,.,.,,,.,..T.,,...,c.,,,,..,,....,,..T,,..,,,.,,.T...,...,.,,,..,,.,,,T..,.,,,..,....,,.,..,^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	742	C	116	,$.,.,,.,,,.,,.,..,,.,,.,.,,,.,....,,..G,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,G,,,..,....a,.,..,.,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	743	T	117	.$,$.,,.,,,.,,.,..,,.,g.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,..,A...,,.,..,.,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	744	G	120	.$,$,$.,,,.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,..,....,,.,..,.,,,,^K.^K,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	745	A	116	.$,$t.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,.C,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,..,....,,.,..,.,,,,.,,,,	22022222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	746	A	117	,$.,,.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,..,....,,.,..,.,,,,.,,,,^K,^K,^K,	022222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	748	T	117	.$,$,$.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,g..,,,.,,.....,...,.,,,..,,.,,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	749	G	116	.,..,,.,,.,.,,,T,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,..,....c,.,..,.,,,,.,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	750	T	117	.,..,,.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	751	T	118	.$,$..,,.g,.,.,,,.,....,,..A,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,g,..,....,,.,..,.,,,,.,,,,g,,,,,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	753	G	118	.$.$,$,$.,,.,.,,,.,....,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,..,....,,.,T.,.,,,,.,,,,,,,,,,,.,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	756	T	114	.$,$,,.,....,,...,,.,,,,..,,....,,.A.,,..,,,.,g.....,...,.,,,..,,.,g,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,..A.,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	758	T	119	,$,$.,....,,.AA,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,..A,.,,,..,....,,.,..,.g,,,.,,,,,,,,,,,.,....,.,,^K.^K.^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	761	C	123	.$...,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,G,,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	762	T	123	.$.$.$,,...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,g,,.,....,.,,..,,,..,..,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	763	T	120	,$,$...,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,A,,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	764	G	121	.$..,,.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,..T,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	765	C	122	.$.$,$,$.,,,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	766	G	122	.,,,,..,,....,,...,,..,,,.,,.....,...,.,c,..,,.,,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,^K.^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	768	G	123	,,..,,....,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,c,,.,,.,..,,,.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	770	A	128	.$.$,$,...C,,...t,..,,,.,,...C.,...,.,,,..,,.,,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,^I.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	771	C	126	,$....,,...,,..,,,.,,.....,...,.,,a..,,.,,,...,.,,,..,....,,.,..,.,,,,.a,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	772	G	125	.$.$..,,...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,c,.,,..,,,,.,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	774	G	124	.,,...,,..,,,.,,.....,.T.,.,,,..,,.,,c...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,c,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,^K,^I,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	775	C	128	.$,$,$...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,a,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,G,,.,..,,,.,,..,,,,.,,,^K.^K.^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	776	A	127	...,,..,,,.,,.....,...,.,,,..,,.,,,...,.,,,..,....,,C,..,.,t,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,t.,,,C...^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	777	G	128	.$.$.$,$,$..,,,.,,.....,...,.,,,..,,.c,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	778	G	126	.$.,,,.,,.....,...,.,,,..,,.,,,...c.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	779	A	126	.$,$,$,$.t,.....,...,.,,,..,,.,,,...,.,,,..,....,,.t..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,^K.	222220222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	780	A	129	.,,.....,C..,.,,,..,,.,,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..t,,,.,,,.....,,.,,.^K.^K.^K.^K.^K,^K,^K,	202222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	781	A	131	.$,$,$.....,...,.,,,..,,.,,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,^K,^K,	20222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	782	C	128	.$.$...,...,.,,,..,,.,,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	783	A	129	.$.$.$,$...,.,,,..,,.t,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..t..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	784	C	127	.$.$.,.,,,..,,.,,,...,.,,,..,....,,.,..a.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,a.....,,,,,.,,^K.^I.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	785	T	128	.$,$.,,,..,,.,,g...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,..^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	786	G	127	.$,$,,..,,.,,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,.T,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	787	A	125	t,C.,,.,,,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.t,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	788	C	127	,$,$..,,.,,,..G,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,G,,..,,,..,..,,,,.,,.,..,,a.,,..,,,,.,,,.....,,.,,.G...,,,,,.,,...,,.^I.^I.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	789	G	129	..,,.,,,...,.,,,..,..T.,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,T,,.,..,,,.,,..,,,,.,,,.....,c.,,.....,,,,,.,,...,,...^K.^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	790	T	132	.$.$,$,$.,,,...,.,,,..,....,,.,..g.,,,,.,g,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	791	T	129	.$,$,,...,.g,,..,....,,.,..,.,,,g.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,..,^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	792	C	128	,$,...,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,G...,,,..,,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	793	T	130	,$...,.,,,..,....,,.,..,.,,g,.,,,,,,,,,,g.,....,.,,..,,,..,..,,,,.,,.g..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,..,,.^I.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	794	T	129	...,.,,,..,....,,.,..,.,,,,A,,,,,,,,,,,.,..A.,.,,..,,,..,..,,,,A,,.,..,,,.,,..,,,,.,,,.....,,.,,.....g,,,,.,g...,,....,,,..,,...,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	795	A	129	...t.,,,..,....,,.,.C,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,t.....,,.,t.C...,,,,,.,,...,,....,,,..,,...,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	796	C	130	.$..,.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,.G..,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,..,,...,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	797	T	131	.$.$,$.,,,..,....,,.g..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,..,,...,,^I,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	798	G	131	.,,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,c..,,...,,,,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	799	A	135	.$,$,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,..,,...,,,,,,,^K.^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	800	C	135	,,..,....,,.,..,.,,,,.,,,,,,,,,,,.,....a.,,..,a,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,..,,...,,,,,,,...,^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	801	G	138	,$,$..,....,,.,..,.,,,,.,,,,,,c,,,,.,....,.,,..,,,T.,..,,,,.,,.,..,,,.,,..,,,,.,,,...T.,,.,,.....,,,,,.,,...,,....,,,..,,.T.,,c,,,,...,..^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	802	C	138	..,..G.,,.,..a.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,G,..,,a.,,.G,,,,.,,,.....,,.,,.....,,,,,.,,.G.,,....,,,..,,...,,,,,,,...,...,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	803	A	140	.$.$,$....tt.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,..,t...,,,,,,,...,...,,.,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	804	G	138	.$...,,.,..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,.T,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.c,.....,,,,,.,,...,,....,,,..,,...,,,,,,,...,...,,.,..^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	805	A	138	.$.$.,,.,..,.,,,t.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,..,,...,,,,,,,...,...,,.,...^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	807	G	134	.$,$..,.,,,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,..,,...,,,,,,,...,...,,.,...,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	809	A	135	.$,$.,,,,.,,,,,,,,,,,.,....t.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,..,,...,,,,,,,...,...,,.,...,..,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	810	A	136	.$,$,$,,.,,,,,,,,t,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,C,,,.....,,.,,.....,,,,,.,,...,,....,,,..,,...,,,,,,,...,...,,.,...,..,,,^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	811	A	134	,,.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,..,,...,,,,,,,...,...,,.,...,..,,,.,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	812	C	137	,$,$.,,,,,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,.G.,,....,,,..,,...,,,,,,,...,...,,.,...,..,,,.,,,^K.^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	813	G	137	.$,$,$,$,$,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,.T.,,..T.,,,..,,...,,,,,,,...,...,,.,...,..,,,.,,,...^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	814	T	133	,,,,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,..,,...,,,,,,,...,...,g.,...,..,,,.,,,...,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	815	G	136	,$,$,$,,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,T..,,....,,,..,,...,,,,,,,...,T..,,.,...,..,,,.,,,...,,.,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222022
+phiX174	816	C	135	,$,,,.,....,.,,..,,,..,..,,,a.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,..,,...,,,,,,,...,..G,,.,...,..,,,.,,,...,,.,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	817	G	137	,,,.,....,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,..c,...,,,,,,,...,...,,.c...,..,,,.,,,...,,.,,,,,^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	818	T	138	,$,$,.,....,.,,..,,,.A,..,,,,.,,.,..,,,.g,..,,,,A,,,.....,,.,,.....,,,,,.,,...,,....,,,..,,...,,,,,,,...,...,,.,...,..,,,.,,,...,,.,,,,,..,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	819	C	135	,$.,...,.,,..,,,..,..,,,,.,,.,..,,,.,,.G,,,,.,,,.....,,.,,.....,,,,,.,,...,,.G..,,,..,,...,,,,,,a...,...,,.,...,..,,,.,,,...,,.,,,,,..,.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	820	A	135	.$,...,.,,..,,,..,..,,,,.,,.,..,,,.,,..,,,,.,,t.....,,.,,....C,,,,,.,,...,,....,,,..,t...,,,,,,,...,...,,.,...,..,,,.,,,...,,.,,,,,..,.^K,	22222202222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/
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+phiX174	828	C	135	.$.$,$..,,,,.,,.,..,,,.,,..,,,,.,,,.....,,.,,.....,,,,,.,,...,,....,,,..,,...,,,,,,,...,...,,.,...,..,,,G,,,...,,.,,,,,..,.,.,......,,.,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	835	A	135	.$.$,$,$,$.,,..t,,,.,,,.....,,.,,.....,,,,,.,,..C,,....,,,..,,...tt,,,,,...t...,,.,...,.Ct,,.,,,...,t.,t,,,..,.,.,......,,.,,,,..,.,...,^K.^K.^K,^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	838	G	131	.$.$,$,$,$c$.,,,.....,,.,,.....,,c,,.,,...,,....,,,..,,...,,,,,,,...,...,,.,...,.T,,,.,,,...,,.,,c,,..,.,.,......,,.,,,,..,.,...,..,,,,^K.^K,	22222/22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	844	T	134	.$.$.$.$.,,.,,.....,,,,,.,,...,,....,,,..,,.A.,,,,,,,...,...,,.,...,..,,,.,,,...,,.,,,,,..,.,.,......,,.,,,,..,.,...,..,,,,.,.,....,,.,,.,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	845	G	133	.$,$,.,,.....,,,,,.,,...,,....,,,T.,,...,,,,,,,...,...,,.,...,..,,,.,,,...,,.,,,,,..,.,.,......,,.,,,,..,.,...,..,,,,.,.,....,,.,,.,^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	846	T	133	,$.,,.....,,,,,.,,...,,....,,,..,,...,,,,,,,...,...,,.,...,..,,,.,,,...,,.,,,,,..,.,.,......,,.,,,,..,.,...,..,,,,.,.,....,,.,,.,..,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	859	T	128	.$.$,$,...,,,,,,,...,...,,.,...,..,,,.,,,...,,.,,,,,..,.,.,......,,.,,,g..,.,...,..,,,,.,.,....,,.,,A,..,.,.,.,,,....,,,....,..,,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	978	G	148	.$....,,...,...,...,,..,,,,,,,.,.,,.,,..,...,,,,,,,,...,,,T,,,.,.,,....,,.T,...,,.,,,....,,,....,,,,..,,,,.,....,,c...,.,.,,,,..,..,,T,..,,.,....,.T^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	979	G	152	.$.$..,,...,...,...,,..,,,,,,,.,.,,.,,..,...,,,,,,,,...,,,.,,,.,.,,....,,..,...,,.c,,....,,,....,,,,..,,,,.,....,,,T..,.,.,,,,..,..,,.,..,,.,....,..,^K.^K.^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	980	C	152	.$.$a,...,...,.G.,,..,,,,,,,.,.,,.,,..,...,,,,,,,,...,,,.,,,.,.,,....,,..,...,,.,,,...G,,,....,,,,..,,,a.,....,,,...,.,.,,,,..a..,,.,..,,.,....,..,...,,^K,^K,	22022222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	981	C	151	,,...,...,...,,..,,,,,,,.,.,,.,,..,...,,,,,,,,...,,,.,,,.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.a....,..,...,,,,^K,	/222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	982	C	153	,$,$...,..G,...a,.G,,,,,,,.,.,,.,,.G,...,,,,,,,,...,,,.,,,.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,^K.	/22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/22
+phiX174	983	C	155	.$.$.$,$...,...,,..,,,,,,,.,.,,.,,..,...,,,,,,,,...,,,.,,,.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,.G,..,,.,..,,.,....,..,...,,,,.,.^I.^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220222222
+phiX174	984	T	153	.$.$A,..A,,..,,,,,,,.,.,,.,,..,...,,,,,,,,...,,,.,,,.,.,,....,,..,...,,.,,,....,,,....,,g,.A,,,,.,....,,,...,.,.,g,,..,..,,.,..,,.,....,..,...,,,,A,....,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	985	T	153	.,...,,..,,,,,,,.,.,,.,,..,...,,,,,,,,...,,,.,,,.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,A.,,.,..,,.,....,A.,...,,,,.,....g,,^I.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	986	A	154	.$,$...,,..,,,,,,,.,.,,.,,..,...,,,,,,,,...,,,.,,,.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	987	C	154	.$..,,..,a,,,,,.,.,,.,,..,...,,,a,,,,...,,,.,,,.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,.G,,.,..,,.,....,..,.G.,a,,.,....,,,.,.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	988	T	153	.$.,,..,,,,,,,.,.,,.,,..,...,,g,,,,,...,,,.,,,.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	989	T	155	.$,$,$..,,,,,,,.,.,,.,,..,...,,,,,,,,...,,,.,,,.,.,,....,,..,...g,.,,,..A.,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	990	G	153	.$.$,$,c,,,,.,.,,.,,..,...,,,,,,,,...,,,.,c,.,.,c....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,.T.,,,,.,....,,,.,..,,,,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	991	A	151	,$,,,,,.,.,,.,,..,...,,,,,,,,...,,,.,,,.,.,,....,,..,...,t.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,t,.,....,,,.,..,,,,.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	992	G	152	,$,,,,.,.,,.c,..,T..,,,,,,,,...,,,.,,,.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,T.,...,,,,.,....,,,.,..,,,,.c^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	993	G	151	,$,$,$,$.,.,,.c,..,...,,,,,,,,...,,,.,,,.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	994	A	148	.,.,,.,,..,.CC,,,,,,,,...,,,.,,,.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.t..,,.,....,..,...,,,,.,....,,,.,.C,,,,.,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	995	T	148	.$,$.,,.,,..,...,,,,,,,,...,,,.g,g.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.g,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	996	A	147	.$,$,$.,,..,...,,,,,,,,...,,,.,,,.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	997	A	148	.$,$,$..,...,,,,,,,,...,,,.,,,.,C,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...t.,.,,,,..,..,t.,..,,.,....,.C,...,,,,.,....,,,.,..,,,,.,,,,,^I.^K.^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/222
+phiX174	998	A	145	.$.$,$...,,,,,,,,...,,,.,,,.,C,,....,,..,C..,,.,,,....,,,....,,,,..,,,,.,..C.,,,...,.,.,,,,.C,..,,.,..,,.,....,..,...,,,,.,....t,,.,..,,,,.,,,,,C...	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220222
+phiX174	999	T	143	.$.$.,,,,,,,,...,,,.,,,.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,g.,....g..,...,,,,.,....,,,.,..,,,,.,,,,,....^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1000	T	145	.$,,,,,,,,...,,,.,,,.,.,,....,,A.,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.....^K.^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1001	A	145	,$,,,,,,,...,,,.,,,.,.,,....,,..,...,,.,,,.C..,,,....,,,,..,,,,.,....,,,C..,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,C...C..,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1002	T	144	,,,,,,,...,,,.,,,.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,.A.,.,.g,,,..,..,,.,..,,.,A...,..,...,,,,.,....,,gA,..,,,,.,,,,,.A.....,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1003	G	151	,$,$,,,,,...,,,.,,,.,.,,....,,..,...,,.,,c....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,..T.,,,.,..,,,,.,,,,,.......,,,^K.^K.^K.^K.^K.^K,^K,	2220222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1004	T	151	,$,$,,...,,,.,,,.,.,,....,,..,...,,.,,,....,,,A...,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.......,,g.....g,^K.^K,^Ig	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220
+phiX174	1005	C	149	,$,$...,,,.,,,.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,.G,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,..G....,,,.....,a.,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1006	T	149	.$.$.$,$,$,$.,,,.,.g,....,,..,..A,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.......,,,.....,,.,,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1007	A	146	.$,$,$,$.,.,,....,,..,...,,.,,,....,,,....,,,,..,,,,.,C...,,,...,.,.,,,,..,..,,C,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,t.......,,,.....,,.,,.,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1008	A	142	.$,$.,,....,,..,C..,,.,,,....,,,C...,,,,..,,,,.t....,,,...,.,.,,,,..t..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.......,,,.....,,.,,.,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1009	T	144	.$,$,$....,,..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.....A.,,,.....,,.,,.,,,,^K.^I.^K,^K,	2222222.2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1010	A	144	.$.$.$.$,$..,...,,.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,t.......,,,...C.,,.,,.,,,,..,,^K.^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1011	T	139	.$.$,$...,,.,,,....,,,....,,,,..,,,,.g....,,,...,.,.,,,,..,..g,.,..,,.,....,..,...,,,,.,....,g,.,..,,,,.,,,,,....A..,,,.....,,.,,.,,,,..,,...,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1012	T	137	.$.$.,,.,,,....,,,....,,g,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,.A.,,,,.,....,,,.,..,,,,.,,,,,.......,,,.....,,.,,.,,,,..,,A..,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1013	C	135	.$,$,$.,,,....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,.G..,,,.,..,,,,.,,,,,.......,,,.....,,G,a.,,,,..,a...,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1014	A	133	.$,$,$,$....,,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,.C..,,,.,..,,,,.,,,,,...C...,,,.....,,.,,.,,,,..,,...,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1016	A	131	.$.$.$,$,,....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.t..,,.,....,..,...,,,,.,....,,,C,..,,,,.,,,,,.......,,,.....,,.,,.,,,,..,,...,,...,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1017	C	128	a,....,,,,..,,a,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.......,,,.....,,.,,.,,,,..,,...,,...,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1018	T	134	,$,$....,,,,..,,,,.,....,,,...,.,.,,,,..,..,,.,..g,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.......,,,.....,,.,,.,,,,..,,...,,...,.^K.^K.^I.^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1019	G	136	.$.$.$.$,$,,,T.,,,,.,....,,,...,.,.c,,,..,..,,T,..,,.,....,..,...,c,,.,....,,,.,..,,,,.,,,,,.......,,,.....,,.,,.,,,,..,,...,,...,....,,,^K.^I.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1020	G	133	,$,$,$..,,,,.,....,c,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....c,,.,..,,,,.,,,,,.......,,,.....,,.,,T,,,,..,,...,,...,...T,,,..,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1021	C	132	.$.,,a,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.......,,,.....a,.,,.,,,,..,,...,,...,....a,,..,,.,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1022	G	133	.$,$,$,.,....,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,c.,....,,,.,..,,,,.,,,,,.......,,,.....,,.,,.,,,,..,,...,,...,....,,,..,,..,.,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1023	C	132	,$.,....,,,...,.,.,,,,..,..,,.,..,,.,....a..,...,,,,.,....,,,.,..,,,,.,,,,,.....G.,,,.....,,.,,.,,,,..,,...,,...,....,,,..,,..,.,,,^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1024	C	131	.$,$G...,,,...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.......,,,.....,,.,,.,,,,..,,...,,...,....,,,..,,..,.,,,..	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1025	G	131	.$.$.$.$,$,,...,.,.,,,,..,.T,,.c..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.......,,,.....,,.,,.,,,,..,,...,,...,....,,,..,,..,.,,,..^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1026	A	129	,$,$...,.,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.......,,,.....,,.,,.,,,,..,,...,,...,....,,,..,,..,.,,,...,^K.^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1027	G	129	...,.,.,,,,..,..,,.,..cc.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.......,,,.....,,.,,.,,,,T.,,...,,...,....,,,..,,..,.,,,...,...^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1028	C	131	...,.,.,,,,..,..,,.,..,,.a...G,..,...,,,,.,....,,,.,..,,,,.,,,,a.......,,,.....,,.,,.,,,,..,,...,,...,....,,,..,,..,.a,,...,...,,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1029	G	132	.$.$.$,$.,.,,,,T.,..,,.,..,,.,....,..,T..,,,,.,....,,,.,..,,,,.,,,,,.......,,,.....,,T,,.,,,,..,,...,,...,....,,,..,,..,.,,,...,...,,.,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1030	T	132	.,.,,,,..,..,,.,..,,.,....,..,A..,,,,.,....,,,.,..g,,,.,,,,,.......g,,.....,,.,,.,,,,..,,...,,...,....,,,..,,..,.,,,...,...,,.,,^K.^K.^K.^I.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1031	A	136	.$,.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.......,,,.....,,.,,.,,,,..,,...,,...,....,t,..,,..,.,,,...,..C,,.,,....^K.^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1032	T	137	,$.,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.......,,,....A,,.,,A,,,,..,,...,,...,....,,,..,,..,.,,,..A,...,,.,,.A.....,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1033	G	139	.$,,,,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,T......,,,.....,,.,,.,,,,..,,...,,...,....,,,..,,..,.,,,...,...,,.,,.......,..^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1034	C	138	,$,$,$,..,..,a.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,......G,,,G....,,.,,.,,,,..,,...,,.G.,....,,,..a,..,.,,,...,...,,.,,.......,....,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1035	C	137	,..,..,,.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.G.....,,,.....,,.,,.,,,,..,,...,,...,....,,,..,,..,.,,,...,...a,.,,.......,....,^Ka^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222202
+phiX174	1036	G	141	,$..,..,,.,..,,.,....,..,...,,,,.,.T..,,,.,..,,,,.,,,,,.......,,,.....,,.,,.,,,,..,,...,,...,....,,,..,,..,.,,,...,...,,.,,.......,....,,,^K.^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1037	C	143	.$.$,$..,,.,..,,.,G...,..,...,,,,.a....,,,.,..,,,,.,,,,a.......,,,.....,,.,,.,,,,..,,...,,...,....,,,..,,..,.,,,...,...,,.,,.......,....,,,.,,,^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1038	A	145	.$.$,$,$.,..,,.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.......,,,.....,,.,,.,,,,..,,...,,...,....,,,..,,..,.,,t...,...,,.,,.......,....,,,.,,,.,,^K.^K.^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1039	T	142	.$,$..,,.,....g..,...,,,,.,....,,,.,..,,,,.g,,,,.......,,,...A.,,.,,.,,,,..,,...,,...,..A.,,,..,,..,.,,,...,...,,.,,.......g....,,,.,,,.,,..,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1040	G	141	.$.$,,.,....,..,..T,,,,.,....,,,.,..,,,,.,,,,,.......,,,.....,,.,,.,,,,..,,...,,...,....,,,..,,..,.,,,...,...,,.,,.......,....,,,.,,,.,,..,,,,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1041	A	140	,$,$.,....,..,...,,,,.,....,,,.,..,,,,.,,,,,.......,,,.....,,.,,C,,,,..,,...,,...,...C,,,..,,..,.,,,...,...,,.,,.......,....,,,.,,,.,,..,,,,.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1101	C	152	.$.$..,,,.,,,.,,..,,,,..,.,,...,,..,,.,,....,,..,.,...,.,..,.,,,..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.a..,.,,.,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1103	C	150	,,.,,,.,,..,,,,..,.,,...,a..,,.,,....,,..,.,...,.,..,.,,,..,......,...,,,,,a,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1104	C	150	,$,$.,,,.,,G.,,,,..,.,,...,,..,,.,,....,,..,.,...,.,..,.,,,..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1105	G	148	.$,$,$,$.,,..,,,,..,.,,...,,..,,.,,....,,..,.,...,.,..,.,,,..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,.T.,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1106	G	147	.$,$,$..,,,,..c.,,...,,..,,.,,....,,..,.,...,.,..,.,,,..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,............T,,,,.,.,,,.,..,.,,.,...,^K.^K.^Kc	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220
+phiX174	1107	T	144	.$.$,$,$,$,..,.,,...,,..,,.,,....,,..,.,...,.,..,.,,,.A,.A....,...,,,,g,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1108	T	142	,$..,.,,...,,..,,.,,...A,,..,.,...,.,A.,.,,,..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1109	A	143	.$.,.,,...,,.Ct,.,,....,,..,.,...,.,..,.,,t..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,..C.,.,,.,,.............,,,,.,.,t,.,..,.,,.,...,..,.,,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1110	T	144	.$,.,,...,,..,,.,,....,,.A,.,.A.,.,..,.,,,..,......,..A,,,,,,,,.,,..,,.....,,.,,,.,.,.,.A..,.,,.,,.............,,,,.,.,,,.,..,.,g.,...,..,.,,.,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1111	C	145	,$.,,...,,..,,.,,....,,..,.,...,.,G.,.,,,..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.aG...,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1112	G	145	.$,$,$T..,,..,,.,,....,,..,.,...,.,..,.,,,..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,T,.,,,.,..,.,,.,...,..,.,,.,.,.,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1113	C	144	...,,..,,.a,....,,..,.,...,.,..,.,,,..,....G.,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1114	T	145	.$.$.$,$,$..,,A,,....,,..,.g...,.,..,.,,,..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1115	G	143	..,,.,,...T,,..,.,...,.,..,.,,,..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1116	G	146	.$.,,.c,...T,,..,.,...,.,T.,.,,,T.,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,^K.^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1117	C	148	.,,.a,....,,..,.,...,.a..,.,,,..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,...^K.^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1118	G	151	.$,$,$.,,..T.,,..,.,...,.,..,.,,,..,T.....c...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,c.,...,..,.,,.,.,.,,.,,..,......^K.^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1119	A	153	.$,$,....,,..,.,...,.,..,.,,,..,......t...,t,,,,t,.,,..,,.....,,.,,t.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,.........^K.^K.^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1120	C	157	,$....,,..,.,...,.,..,.,,,..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,.G.,..,.,,.,.,.,,.,,..,...........,,,^K.^K.^K.^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1122	C	161	.$.$.$,$,$..,.,...,.,..,.,,,..,......,...,,,,,,,,.,,..,,.G...,,.,,,.,.,.,G...,.,,.,,.......G.....,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,...........,,,....,,..,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1123	C	157	..,.,.G.,.,..,.,,,..,......,...,,,,,,a,.,,..,,.....,,.,,,.,.,.,..G.,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,.G.........,,,G...,,..,,,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1124	T	159	.$.$,$.,...,.,..,.,,,..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.g.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,...........,,,....,,..,,,,.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1125	T	158	.$,$...,.,..,.,,,..,......,.A.,,,,,,,,.,,..,,.....,,.,,,.,.,.,.A..,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,.A.........,,,....,,..,,,,..,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1126	C	157	.$.$.$,$.,..,.,,,..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.a.,....,.,,.,,.............,,,,.,.,,,G,..,.,,.,...,..,.,,.,.,.,,.,,..,...........,,,....,,..,,,,..,.,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1127	G	158	.$,$..,.,,,..,......,...c,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,c.,..,.,,T,...,..,.,,.,.,.,,.,,..,...........,,,....,,..,,,,..,.,,^K.^K.^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1128	A	158	.$.$,$.,,,..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,...........,,,....,,..,,,,..,.,,..,,,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1129	G	155	.$,$,,..,......,...,,,,,,,,.c,..,,.....,,.,,,.,.,.,....,.,,.,c..........T..,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,.....T.....,,,....,,..,,,,..,.,,.T,,,..	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1130	A	155	,$..,......,...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,...........,,,....,,..,,,,..,.,,..,,,..^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1131	T	154	.$.$,$......,...,,,,,,,,.,,..,,.A...,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,A,.,.g,.,,..,.......A...,,,....,,..,,,,..,A,,..,,,...,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1134	A	152	.$.$,$...,,,,,,,,.,,..,,.....,,.,,,.,.,.,....,.,,.,,...C.....C...,,,,.,.,,,.,..t.,,.,...,..,.,,.,.,.,,.,,..,...........,,,....,,..,,,,..,.,,..,,,...,,,^K.^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1137	C	145	.$,$,$..,,.....,,.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,...........,,,....,,..,,,,..,.,,..,,,...,,,...,,,..^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1138	C	144	.$.$,$,$.....,a.,,,.,.,.,....,.,,.,,......G......,,,,.,.,,,.,..,.,,.,...,G.,.,,.a.,.,,.,,..,...........,a,....,,..,,,,..,.,,G.,,,...,,,...,,,....,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/2
+phiX174	1139	G	142	.$.$...,,.c,c.,.,.,....,.,,.,,.............,,,c.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,...........,,,....,,.T,,,,..,.,c.T,,,...,,,...,,,.T..,T,^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/222
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+phiX174	1141	T	141	.$.$,$,$.,,,.,.,.,....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,...........,,,....,,..,,,,..,.,,..,,,...,,,...,,,....,A,..,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222022222
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+phiX174	1147	T	136	.$,$....,.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,...........,,,....,,..,,,,..,.,,..,,,...,,,...,,,....,.,..,,,..,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1148	C	135	.$.$..,.,,.,,.............,,,,.,.,,,.,G.,.,,.,...,..,.,,.,.,.,,.,,..,...........,,,....,,..,,,,..,.,,..,,,...,,,.G.,,,....,.,..,,,..,a.,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1149	T	134	.$.g.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..g.,,.,.,.,,.,,..,...........g,,....,,..,,,,..,.g,..,,,...,,,...,,,....,.,..,,,..,,.,,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1150	C	134	.$,$.,,.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,Ga.,.,,.,,..,...........,,,....,,..,,,,..,.,,..,,,...,,,...,,,....,.,..,,,..,,.,,.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1151	C	133	.$,$,$.,,.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,...........,,,....,,..,,,,..,.,,..,,,...,,,G..,,,...G,.,..,,,..,,.,,..^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1152	G	130	.$,$,$.............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,...........,,,....,,..,,,,..,.,,..,,,...,,,...,,,....,.,..,,,..,,.,,...	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1154	C	128	.$............,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..a...........,,,....,,..,,,,..,.,,..,,,...,,,...,,,....,.,..,,,..,,.,,...,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1155	T	127	.$.$.$.........,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,g.,,..,...........,,,....,,..,,,,..,.,,..,,,...,,,...,,,....,.,..,,,..,,.,,...,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1156	T	126	.$.$.$......,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,...........,,,....,g..,,,,..,.,,..,,,...,,,...,,,....,.,..,,,..,,.,,...g^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1157	T	124	.$.$.$...,,,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,.,,..,..........A,,,....,,..,,,,..,.,,.A,,,...,,,...,,,....,.,..,,,..,,.,,...,.,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1158	C	121	.$.$.$,$,$,,.,.,,,.,..,.,,.,...,..,.,,.,.,.,,G,,..,...........,,,....,,..,,,,..,.,,..,a,...,,,...,,,....,.,..,,,..,,.,,...,.,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1159	T	117	,,.,.,,,.,..,.,,.,...g..,.,,.,.,.,,.,,..,...........,,,....,,..,,,,..,.,,.A,,,...,,,...,,,....,.,..,,,..,,.,,...,.,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1160	C	120	,$,$.,.,,,.,..,.,,.,...,..,.a,.,.,.,,.a,..,...........,,,....,,..,,,,..,.,,..,,,...,,,.G.,,,....,.,..,,,..,,.,,...,.,,,^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1163	T	121	,$,.,..,.,,.,...,..,.,,.,.,.,,.,,..,...........,,,....,,..,,,,..,.,,..,,,...,,g..A,,,....,.,..,,,..,,.,,...,.,,,.,,...,.,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1164	T	121	,$.,..,.,,.g...,..,.,,.,.,.,,.,,..,...........,,,....,,..,,,,..,.,,..,,,...,,,...,,,....,.,..,,,..,,.,,...,.,,,.,,...,.,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1381	T	125	.,.,,,,,,..,,,,,.,..,,,,,...,.,,,,,..,,..,,,..,,...,.,...,.,,.,.,,.,,,..........,.,.,..,,.,,,..,.,,..g,,.,.,.,.,.,..A,,g,.^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1382	T	127	.$,$.,,,,,,..,,,,g.,..,,,,,...,.,,,,,..g,..,,,..,,...,.,...,.,,.,.,,.,,,..........,.,.,..,,.,,,..,.,,..,,,.,.,A,A,.,...,,,,.,,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1384	T	129	.$,,,,,,..,,,,.,..,,,,,...,.,,,,,..,,..,,,..,,...,.,...,.,,.,.,,.,,,..........,.,.,..,,.,,g..,.,,..,,,.,.,.,.,.,...,,,,.,,,.,,,^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1394	T	138	.$,$,,,,...,.,,,,,..,,..,,,..,,...,.,...,.,,.gA,,.,,,..........,.,.g..,,.,,,..,.,,..,,,.,.,.,.,.,...,,,,.,,,.,,,.,,,.......,,...,,,...,.,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1562	A	141	.$.$,$t..,C,,..,,,,...,...,...t...,,,.,,.,..,.,,..,,,.,,.,,,,.,,,.,.,,,,,,...,..,,..,t..,,,....,..,,,....,,,,,..,,.,,...,,,.,.,.,.,.....,...,,,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1563	C	139	,$..,.,,..,,,,...,...,..G,...,,,.,,.,..,.,,..,,,.,a.,,,,.,,,.,.,,,,,,...,..,,..,,..,,,....,..,,,....,,,,,..,,.,,...,,,.,.,.,.,.....,...,,,.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1564	C	140	..,.,,.G,,,,...,...,...,...,,,.,,.,..,.,,..,,,.,,.,,,,.,,,.,.,,,,,,...,..,,..,,..,,,....,..,,,....,,,,,..,,.a,...,,,.,.,.,.,.....,...,,,..^K,^I,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1566	C	144	.$,$,$..,,,,...,...,...,...,,,.,,.,..,.,,..,,,.,,.,,,,.,,,.a.,,,,,,.G.,G.,,..,,..,,,....,..,,,....,,,,,..,,.,,...,,,.,.,.,.,.....,...,,,..,,,,,^K,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1570	T	143	,$...,A..,...,...,,,.,,.,..,.,,..,,,.,,.,,,,.,,,.,.,,,,,,...,..,,..,,..,,,....,..,,,....,,,,,..,,.,,...,,,.,.,.,.,.....,...,,,..,,,,,,,,,.,.,...	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1571	A	142	...,...,...,...,,,.,,.,..,.,,..,,,.,t.,,,,.,,,.,.,,,,,,...,..,,..,,..,,,...C,..,,,....,,,,,..,,.,,...,,,.,.,.,.,.....,...,,,..,,,,,,,,,.,.,...	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1572	T	144	...g...,...,...,,,.,,.,..,.,,..,,,.,,.,,,,.,,,.,.,,,,,,...,..,,..,,..,,,....,..,,,....,,,,,..,,.,,...,,,.,.,.,.,.....,...,,,..,,,,,,,,,.,A,...^K.^K,	222022222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1574	G	143	.$.$.$,$...,...,,,.,,.,..,.,,..,,,.,,.,,,,.,,,.,.,,,,,,...,..,,..,,..,,,....,..,,,....,,,,,..,,.,,...,,,.,.,.,.,.....,...,,,..,,,,,,,,,.,.,....,..^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1628	G	144	.$.$,$...,,,..,,,,,,,,,.,.,....,.....,,,,,,..,,...,,..,.,...,...,,.......,..,.,..,,.,,..,.,,,,,,.,...,...,,,..,,.,..,.,,,,,,.,,,,,,,..,.,c..c.,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1882	T	135	,$,$.,,,,.,.,,...,,.,.,,,.....,,,,,,,,,...,,...,,,A.,,.,,,...,,..,,.,..,..,,,.,,,....,....,..A,...,,..,,,,,....,,.A.,,.,..,,...,.,,..,,,^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1883	A	136	.$,$,$,$,.,.,,...,,.,.,,,.....,,,,,,,,,...,,...,,,..,,.,,,...,,..t,.,..,..,,,.,,,....,....,...,...,,..,,,,,....,,...,,.,..,,...,.,,..t,,,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1884	C	134	,.,.,,..G,,.,.,,,.....,,,,,,,a,...,,...,,,.G,,G,,,...,,..,,.,..,..,,,.,,,....a....,...,...,,..,,,,,....,,...,,.,..,,...,.,,..,,,,,,a^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1885	T	134	,.,.,,...,g.,.,,,...A.,,,,,,,,,...,,...,,,..,,.,,,...,,..,,.,..,..,,,.,,,....,A...,...,...,,..,,,,,....,,...,,.,..,,...,.,,..,,,g,,,.,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1886	G	135	,$T,.,,...,,.,.,,,.....c,,,,,,,,...,,T..,,,..,,T,,,...,,..,,.,..,..,,,.,,,....,....,...,...,,..,,,,,....,,...,,.,..,,...,.,,..,,,,,,,.,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1889	A	143	.$,$.,,...,,.,.,,,.....,,,,,,,,,...,,...,,,..,,.,,,...,,..,,.,..,..,,,.,,,....,....,...,...,,..,,,,,....,,...,,.,..,,...,.,,..,,,,,,,.,..,.,^K.^K.^K,^K,^K,	22220222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1890	C	143	.$,$...,,.,.,,,.....,,,,,,,,,...,,...,,,..,,.,,,...,,..,,.,..,..,,,.,,,....,....,...,...,,..,,,,,....,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1891	T	145	.$.$.$,$,$.,.,,,.....,,,,,,,,,...,,...,,,..,,.,,,...,,..,,.,..,..,,,.,,,A...,....,...,...,,..,,,,,....,,...,,.g..,,...,.,,.A,,,,,,,.,.A,.,..,,,,,,^I.^K.^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1892	A	141	.$,$.,,,.....,,,,,,,,,...,,...,,,..,,.,,,...,,..,,.,..,..,,,.,,,....,....,.C.,...,,..,,,,,....,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,....^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1893	A	139	.$,$,$,$.....,,,,,,,,,...,,.C.,,,..,,.,,,...,,C.,,.,..,..,,,.,,,....,....,...,...,,..,,,,,....,,...t,.,.C,,...,.,,..,,,,,,,.t..,.,..,,,,,,.....	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1894	A	137	.$.$...,,,,t,,,,...,,...,,,..,,.,,,...,,..,,.,..,..,t,.,,,....,....,...,...,,..,,,,,....,,...,,.,..,,...,.,,..t,,,,,,.,..,.,..,,,,,,.....^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1896	A	136	.$.$.$,$,$,$,$,,,,,...,,...,,,..,,.,,,...,,..,,.,..,..,,,.,,,....,....,...,...,,..,,,,,....,,...,,.,..,,.C.t.,,..,,,,,,,.,..,.,..,,,,,,......,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1898	A	129	,$,$...,,...,,,..,t.,,,...,,..,,.,..t..,,,.,,,....,....,...,...,,..,,,,,....,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,......,,,^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1899	T	127	.$..,,...,,,..,,.,,,...,,..,,.,..,..,,,.,,,....,....,...,...,,..,,,,,....,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,......,,,A.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1900	T	129	.$.$,$,$...,,,..,,.,,,...,,..,,.,..,..,,,.,,,....,....,...,...,,..,g,,,....,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,......,,,..^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1901	C	125	.$.$.$,,,..,,.,,,...,,..,,.,..,..,,,.,,,....,....,...,...,,..,,,,,....,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,G.....,,,...,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1903	G	124	,$,$..,,.,,,...,,..,c.,..,..,,,.,,,....,..T.,...,...,,..,,,,,....,,...,,.,..,,...,.,,..,c,,,c,.,..,.,..,,,,,,......,,,T..,,,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1904	T	123	.$.$,,.,,,...,,..,,.,..,..,,,.,,,....,....,...,A..,,..,,,,,...A,,...,,.,A.,,...,.,,..,,,g,,,.,..,.,A.,,,,,,......,,,...,,,,.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1905	A	125	,$,$.,,,...,,..,,.,..,..,,,.,,,....,....,...,...t,..,,,,,..C.,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,..^K.^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1906	C	124	.$,$,$,$...,,..,,.,..,..,,,.,,,....,....,...,...,,..,,,,,...G,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1909	T	116	.$,$..,..,,,.,,,....,....,...,...,,..,,,,,....,,...,,.,..,,A..,.,,..,,,,,,,.,..,.,..,,,,,,......,,,...g,,,....,,..,,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1912	C	118	.$.$,$,$,.,,,....,....,...,...,,..,,,,,....,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,a,G.....,,,...,,,,....,,..,,.,.,..,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1913	G	115	,$.,,,....,....,...,T..,,..,,,,,....,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,..,,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1914	C	118	.,,,....,....,...,...,,..,,,,,....,,...,,.,..,,...,G,,..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,..,,,.^K.^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1918	A	122	.$...,....,...,...,t..,,,,,....t,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,C...,,..,,.,.,..,,,C..,,.,..,^K.^K,^I,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1920	G	124	.$.$,$T...,...,...,,..,,,,,....,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1921	T	124	.$.$..g...,...,,..,,,,,....,,...,,.,..,,...,.,,..g,,,,,,.,..,.,..,,,,,,......,g,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,g^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1925	T	127	.$.$.,...,,..,,,,,....,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,g,,,......,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1926	T	127	.$,$...g,..,,,,,....,g...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,..A...,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1927	G	125	.$.$.$,$,$..,,c,,....,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1928	A	121	.$.$,,,,,....,,C..,,.,..,t...,.,,..,,,,,,t.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1929	C	120	,$,,,,....,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..a,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1930	T	122	,$,,,....,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,..,,,...,g.,..,.,,.,,,..,.....,,,.,..^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1932	A	119	.$.$..,,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,t..,,.,.,..,,,...,,.,..,.,,.,,,..,.C...,,,.t...,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1933	T	118	.$.$,$,...,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,A,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1934	A	120	,$...,,.,..,,...,.,,..,,t,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,.^K.^K.^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1935	C	119	.$..,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,...G,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1936	C	120	.$.,,.,..,,...,.,,..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,.G,,,...,,.,..,.,,.,,,..,....G,,,.,...,,,....,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1939	T	117	.$.$,$,$...,.,,..,,g,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1940	A	114	.$.$.,.,,..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.t..,,,C..,,.,..,.,,.,,,..,.....,,t.,...,,,....,,.,.,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	1942	T	114	.,.,,..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,.A..,,.,.g,,.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1943	G	115	.$,$.c,..,,,,,,,.,..,.,..,,,,,c......,,,...,,,,T...,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.T...,,,.,...,,,....,,.,.,,,..^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1944	C	115	.,,..,,,,,,,.,..,.,..,,,,,,......,,,.G.,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1945	T	115	.$,$,..,,,,,,,.,..,.,..g,,,,,......,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,A,.,,,...,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1946	G	115	,$..,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1947	G	118	.$.,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,.T,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,^K.^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1948	C	119	.,,,,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,...G.,,,G,...,,,....,,.,.,,,...,,.,...,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1949	G	120	.$,$,$,$,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,T,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1950	A	120	,,,,.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,...C.,,,.,...,,,....,,.,.,,,...,,.,...,.,t^K.^K.^K.^I.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1951	C	124	,$,,,.,..,.,..,a,,,,......,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,.G,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,....^KG^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/222
+phiX174	1952	C	125	,$,$,$.,..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,..,,,..G,,.,..,.,,.,,,..,...G.,,,.,...,,,....,,.,.,,,...,,.,...,.,,.....,,,^K.^Ka	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222.
+phiX174	1953	C	124	G$,$..,.,..,,,,,,......,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,.....,,,.,^K.^K,	.222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1954	T	124	..,.,..,,,,,,....A.,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,g,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1955	G	126	.$.,.,.,,,,,,......,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,.T,.....,,,.,...,,,T...,,.,.,,,..T,,.,...,.,,......,,,.,.,.^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1956	T	127	.$,$.,.,,,,,,......,,,...,,,,....,,..,,.,.,..,,g...,g.,..,.,,.,,,..,.....,,,.,A..,,,....,,.,.,,,...,,.,...,.,,.A....,,,A,.,..,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1957	T	129	.$,$.,,,,,,......,,,...,,,,....,,A.,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1958	T	128	.$,$,$,$,,,......,,,.A.,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,A.A...,,,.,.,.,.,,.,.,,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1959	T	127	,$,$,$......,,,...,,,,....,,..,,.,.,..,,,...,,A,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,.^K.^I,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1960	G	126	.$.$.$.$..,,,...c,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,...T.,,,.,...,,,....,,.,.,,,...,c.,...,.,,..T...,c,.,.,.,.,,.,.,,..,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1961	T	123	.$.,,,...g,,,....,,..,,.,.,AA,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1962	A	123	.,,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,......,,,C,.,.,.,,.,.,,..,,.,,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1963	T	126	.$,$,,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,.A....,,,.,.,.,.,,.,.,,..,,.,,.,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222022
+phiX174	1964	G	126	,,...c,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,T..,.,,.....T,,,.,.,.,.,,.,.,,..,,.,,.,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1965	G	127	,$,...,,,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,c,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1966	C	127	,$...,,,,....,,..,,.,.,.G,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1967	A	127	.$.$.,,,,....,,..,,.,.,..,,,...,,.t..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1968	A	126	.,t,,....t,..,,.,.,C.t,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,..C,.,,...C..t,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1969	C	129	.$,$,$,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....a,,.,...,,,....,,.,.,,,...,,.a...,.,,....G.,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,..^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1970	T	127	,,....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,......g,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,..A.,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1971	T	133	,$,$....,,..,,.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,....A.,,g.,.,.,.,,.,.,,..,,.,,.,,,,,.,A...,.^K.^K.^K,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1972	G	134	.$T..,,..,,.,.,..,,,...,,.,..,.,,.,,,..,....T,,c.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,c,.,....,...,,,,^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1973	C	136	.$..,,..,,.,.,..,,,.G.,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,....G.,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,^K.^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1974	C	135	.$.$,$,$..,,.,.,..,,,...,,.a..,.,,.,,,G.,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1975	G	132	.$.,,.,.,..,,,...,,.,T.,.,c.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,T,.,,.,.,,T.,,.,,.,,,,,.,....,...,,,,.,,...^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1976	C	133	.$,$,$.,.,.G,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,.....G,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,^K,^Ka	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220
+phiX174	1977	C	135	.,.,..,,,...,,.,..,.,,.,,,..,.....,,,.,...,,,.G.G,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,^K.^K,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1978	G	136	T$,$.,..,,,...,,.,..,.,,.,,c..,.....,,,.,...,,,....,,.,.,,,...,,.,...,T,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,^K.	/222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1979	C	137	.$,$..,,,...,,.,..,.,,.,,,..,.G...,,,.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,G..,,,.,,,,.^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1980	G	138	.$.$,$,,...,,.,..,.,,.,,,..,...T.,,,.,...,,,....,,.,.,,c...,,.,...,.,,......,,,T,.,.,.,,.,.,,..,,.,c.,,,,,.,....,...,,,,.,,...,,,.,,,,..T,^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1981	T	136	,$,$...,,.,..,.,,.,g,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,g,,...,.,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1982	G	134	.$..,,.,..,.,,.,,,T.,.....,,,.,...,,,....,,.,.,,,..T,,.,...,.,,......c,,.,.,.,.,,.,.,c..,,.,,.,,,,,.,....,.T.,,,,.,,...,,,.,,,,...,.,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1983	A	135	.$.$,$,$.,..,.,,.,,,..,.....,,,.,..C,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,C,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1984	A	135	.$,$..,.t,.,,,..,.....,,,.,..C,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,t.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,^K.^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1985	A	134	.$.$,$.,,.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..t,.,,.,,,,,.,....,...,,,,.,,...,,t.,,,,C..,.,,,.,..,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1986	T	137	.,,.,,,.A,.....,,,.,...,,,....g,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...g,,.,,,,...,.,,,.,..,,,^K.^K.^K.^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222202222
+phiX174	1987	T	139	.$,$,$.,,,..,.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,.A.,,,.,,,,...,.,,,.,..,,,.....,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220222222
+phiX174	1988	T	139	.$,$,$,$..,.....,,,.,...,,,.A..,,.,.,,,...,,.,...,.,,.A....,,,.,.,.,.,,.,.,,..g,.,,.,,,,,.g....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.A...,.,^K.^I,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220222222222
+phiX174	1989	C	137	..,.....,,a.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,.G,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1990	T	141	.$.$,$.....,,,.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,g..,,.,,.,g,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..^K,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1991	A	140	.$.$...,,,.,...,,,....,,.,C,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,t...,.,,,.,..,,,.....,.,.,,..,,,,^K.^I,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1992	T	141	.$.$.$,,,.g...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1993	G	140	,,,.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,c,,.c.c,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1994	A	141	,$,$,$.,...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.t,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1995	A	140	.$,$...,,,....,,.,.,,,...t,.,...,.,,......,,,.,.,.,.,,.t.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1996	G	140	...,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...c,,,.,,...,c,.,,,,...,.,,,.,..,,,.....,.,.,cT.,,,,.,.,,.,,,,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1997	G	142	.$..c,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,..T,.,,,.,..,,,.....c.,.,,..,,,,.,.,,.,,,,.,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1998	A	144	.$.,,,....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,C,,..,,,,.,.,,.,,,,.,,,^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	1999	T	147	.$,$,$,....,,.,A,,,...,,.,...,.,,......,,,.,.,.,.,,.,A,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,A,,,.,,^K.^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2000	G	146	,....,,.,.,,,...,,.,...,.c,......,,,.,.,.,.,,.,.,,..,,.,c.,,,,,.,....,..T,,,,.,,...,,,.,,,,...,.,,,.c..,,,.....,.,.,,..,,,c.,.,,.,,,,.,,,.,,..,,^K,^I,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2001	T	147	,$....,,.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,g,,,.,....,.A.,,,,.,,...,,,.,,,,...,.,,,.,.A,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2002	T	148	.$...,,.,.,,,...,,.,...,.,,......,,,.,.,.g.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...g.,,,.,..,,,.....,.,.,,.A,,,,.,.,,.,,,,.,,,.,,..,g,,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2003	T	149	.$.$.$,$,$.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,A.,,,,,.,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2004	T	145	.,.,,,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,A,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.g.,,..,,,,.g.,,.,,,,.,,,.,,..,,,,,.,..^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2005	C	146	.$,$.,,,...,,.,...,.,,......,a,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,a.,..,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2006	C	147	.$,$,$,...,,.,...aG,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,a,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,.^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2007	G	147	,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,c.,,.,,,,,.,....,...,,c,.,,...,,,.,,,,...,.,,,.,..,,,.T...,.,.,,..,,,,.,.,,.,,,,.,,,.c,..,,,,,.,..,...,^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2008	T	148	,...,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,g,.,,,,...,.,,,.,..,,,.....,A,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..g...,..,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2009	T	150	,$...g,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,.A.,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,.A.,..,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2010	C	151	.$..,,.,G..,.,,....G.,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,G,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.a,,.,,..,,,,,.,..,...,..,,.,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2011	T	150	.$.,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2012	G	152	.$,,.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.c,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2013	G	152	,$,$.,T..,.,,......,,,.c.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...c.,,,.,..,,,.....,.,.c,..,,,,.,.,,.,,,,.,c,.,c..,,,,,.,..,...,..,,.,.,..,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2014	T	151	.,...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,..A.,.A.,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..g,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2015	G	152	.$,$...,.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2016	A	152	.$.$.$,$.,,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,.C.,..,,.t.,..,.t.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2017	T	152	.$,$,......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,^K.^K.^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2018	T	152	,$......,,,.,.,.,.,,.,.,,..,,.,,.,,,,,.,....,..A,,,,.,,...,,,.,,,,...,.,g,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,....^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2019	C	153	.$.$.$.$.$.,,,.,.,.,.,a.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,G.,,,a,.,..,...,..,,.,.,..,.,.,,..GG..^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2020	G	151	.$,$,$,$.,.,.,.,,.,.,,..,,.,,.c,,,,.,....,...,,c,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,.T,,,,,.,..,...,..,,.,.,..,.,.,,......,,^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2021	T	148	.$,$.,.,.,,.,.,,..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,A..,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2022	C	147	.$,$.,.,,.,.,,..,,.,,.,,,,,.,....,..G,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..a.,.,,......,,..,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2023	T	146	.$,$.,,.,.,,..,,.,,.,,,,,.g....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,A,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2024	A	144	.$,$,$.,.,,..,,.,,.,,,,,.,....,...,,,,.,,.C.,,,.,,,,...,.,,,.,..,,,....C,.,.,,..,,,,.,.,,.,,,,.,,,.,,.C,,,,,.,..,...,..,,C,.,..,.,.,,......,,..,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2025	A	141	.$,$.,,..,,.,,.,,,,,.,....,...,,,,.tt...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..t,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2026	G	141	.$,$,$..,,.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,T..,..,,.,.,..,.,.,,......,,..,,,,^K.^I.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2027	A	138	.$.,,.,,.,,,,,.,....,..C,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,C..,.C,,.,.,..,.,.,,......,,..,,,t..	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2028	A	141	.$,$,$.,,.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,..C..,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,..^K.^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2029	G	139	.$,$,.c,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,c..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,..T...,,T.,,,,....,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2030	T	137	,$.,,,,,.,....,...,,,,.,,...,,,.,,,,...,.,,g.,..g,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2031	T	137	.$,$,,,,.,....,...g,,,.,,...,,,.,,,,...,.,,,.,..,,,.....g.,.,,..,,,,.,.,,.,,g,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.^Ig	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222.
+phiX174	2032	T	138	,$,$,,.,....,...,,,,.,g...,,,.g,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.g.,,......,,..,,,,....,,.,^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2033	A	139	,$,$.,....t...,,,,.,,...,,,.,,,,...,C,,,.,..t,,.....,.,.,,..,,,,C,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2034	A	138	.$t....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,t,,C,.,,.t,,,.,,,C,,..,,,t,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2035	G	140	,$....,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,T,..,...,..,,.c.,T.,.,.,,......,,..,,,,....,c.,..,..,.^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2036	A	140	.$...,...,,,,.,,...,,,.,,t,...,.t,,.,..,,,..C..,.,.,,..,,,,.,C,,.,,,,.,,,.,,..,,,,,.,..t...,..,,.,.,..,.,.,,......t,..,,,,....,,.,..,..,.,,,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2037	T	142	.$..,...,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.g,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,.^K.^9.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2038	T	146	.$.$,$...,,,,.g,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,.A,.,,,....^K.^K.^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2039	G	146	.$..,,,,.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,T.,,.,.,..,.,T,,......,,..,,,,....,,.,..,..,.,,,......,,,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2040	C	145	.$.$,$,$,$,$.,,...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,..G...,,..,,,,.G..,,.,..,..,.,,,......,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2041	T	141	.$,$,$...,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,g.,.,A.,.,.,,......,,.A,,,,....,,.,..,..,.,,,......,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2042	G	142	.$.$.$,,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.c,,,.,,,.,,..,,,,,.,..,T..,..,,.,.,..,.,.,,....T.,,..,,,,....,,.,..,..,.,,,......,,,,,,,,^K.^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2043	A	141	,,,.,,,,...,.,,,.,..,,,.....,.,.,t..,,,,.,.,,.,,,t.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,,t......,,,,,,,,..,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2044	G	141	,$,,.,,,,...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,T,,c,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,.T..,,.,T.,..,.,,,......,,,,,,,,..,,.,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2045	G	141	,$,$.,,,,...,.,,,.,..,,,..T..,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,T.....,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2046	G	142	.$,$,$,$,$...,.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,T.,T,,,......,,,c,,,,..,,.,.^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2047	T	138	.$..,.g,,.g..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...g..,,.,.,..,.,.,,..A...,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220222
+phiX174	2048	C	139	.$.$,$.,,,.,..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,.G.,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,..G...,,,,,,,,..,,.,..,,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2049	A	138	.$,$,$,C,..,,,.....,.,.tt..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,C.,.,.,,......,,..,,t,....,,.,..,..,.,,,....C.t,,,,,,,..,,.,..,,,.,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2050	G	137	,$.,..,,,.....c.,.,,..,,,,.,.,,.,,,,.,,,.,,T.,,,,,.,..,...,..,,.,.,..,.,.,,......,,T.,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2051	T	137	.,..,,,.....,.,.,,..,g,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,A.,,,,....,,.,..,..,.,,,......,,,,,,,g..,,.g..,,,.,.,,,^KA	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222.
+phiX174	2052	G	138	.$,$..,,,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,T.....,,,,,,,,..,,.,..,,,.,.,,,.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2053	G	136	.$.$,$,$,.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,..	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2054	T	133	,$.....,.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,..^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2055	A	135	.$.$.$.$.$,$.,.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,.C,.,,,......,,,,,,,,..,,.,..,,,.,.,t,...^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2056	T	135	.$,$.,,..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,.A,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,^K.^K.^I.^K.^I,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2057	C	134	.$,$,$..,,,,.,.,,.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,G....,..G.a,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2058	G	132	.$.$,,,,.,.,,.,,,,T,,,.,,..,,,,,.,..,...,..,,.,.,.T,.,.,,......,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2059	T	136	,$,$,$,$.,.,,.,,,,.,g,.,,..,,,,,.,..,...,..,,.,.,..,A,.,,......,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,..^K.^K.^K,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2060	T	135	.$,$.,,.,,,,.,,,.,,..,,,,,.,A.,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,...A,,....,,,,^K.^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2061	A	138	.$,$,$.,,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,..C...,,,,,,,,..,,.,..,,,.,C,t,.....,....,,....,,,,...^K.^K.^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2062	T	136	.$,$,,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2063	G	137	,$,,.,,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2064	C	138	,$,$.,,,.,,..,,,a,.,..,...a..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....a,....,,,,G.G..,,,,.,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2065	G	138	.$,$,,.,,..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,c,.....,....,,....c,,,.....,,,,.,,,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2066	C	138	,$,$.,,..,,,,,.,..,...,..,,.,.,..,.a.,,......,,.G,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,a,.....,,,,G,,,,.,^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2067	C	136	.$,$,$..,,,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,G...,,....,,,,.....,,,,.,,,,.,..	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2068	T	136	.$.$,$,$,,,.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,...A..,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,..^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2069	T	134	,$,$,.,..,...,..,,Ag.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,A.,,,.,.,,,.....,....,,....,,,,.....,,,,.g,,,.,....,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2070	C	135	,$.,..,...,..,,.,.,..,.,.,,......,,..,,,,....,a.,..,..,.,,,......,,a,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,..^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2071	G	135	.$,$..,...,..,,.,.,..,.,.c,......,,..c,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2072	T	136	.$.$,...,..,g.,.,..,.,.,,......,,..,,,,....,,Ag..,..,.,g,......,,,,,,,,..,,.,..,,,.,.,,,.....g....,,....,,,,.....,,,,.,,,,.,....,....,,^K.^K.^I,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2073	A	136	,$...,..,,.,.,..,.,.t,......,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,C,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2074	T	138	.$..,..,,.,.,..,.,.,,.A....,,..,,,,....,,.,..,..g.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,...A.,,,,.,,,,.,....,....,,..,.,^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2075	G	139	.$.$,$..c,.,.,..,.,.,c......,,..,,,,....,,.,.T,..,.,,,......,,,,,,,,..,,T,..,,,.,T,,,.....,....c,....,,,,..T..,,,,.,,,,.,....,....,,..,.,.,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2076	T	137	.$.$,$,.,.,..,.,.,,......,,..,,,,....,,.,..,..,.,g,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,g..,.,.,,,,^I.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2077	T	135	,$.,.,..,.,.,,.A....,,..,,,,....,,.,..,..,.,,,..A...,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,g,,.,...A,....,,..,.,.,,,,.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2078	T	136	.$,$.,..,.,.,,......,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..^I,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2079	C	137	G$a$..,.,.,,......,,..,,,,....,,.,..,..,.,,,......,,,a,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,^K.^K.^K,	//222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2080	T	137	..,.,A,,....A.,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..g,..,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2081	C	137	.$.$,$.,.,a......,,..,,,,....,,.,..,..,.,,a......,,,,,,,,..,,.,..,,,.,G,,,.....,G...,,....,,a,.....,,,,.,,,,.,....,....,,..,G,.,,,,..,,..,.,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2082	C	136	.$,.,,......,,..,,,,....,,.,..,..,.,a,......,,,,,,,,..,,.,..,,,.,G,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2083	T	137	,$.,,.....A,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.A...,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2084	G	139	.$,,......,,..,,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,T...,,....,,,,.....,,,,.,,,,.,....,...T,,..,.,.,,,,..,,..,.,.,,,^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2085	C	141	,$,$......a,..,,,,....,,.a..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.G...,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,a..,^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2086	T	142	.$.$.$.$..,,..,,,,....,,.,..,..,.,,g......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2087	T	139	.$.$,,..,,,,.A..,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,...A.,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2088	A	139	,$,$..,,,t....,,.,..,..,.,,,.C....,,,,,,,,.C,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,.C..,,..,.,.,,,,..,,..,.,.,,,..,..,..,.^K.^K.	2220222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2089	T	138	.$,$,,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,A.,...^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2090	C	139	,$,,....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,..G..,....,,....,,,,.....,,,,.,,a,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2091	A	139	,$t....,,.,..,C.,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,..C.,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2092	C	138	,$G..G,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,.G..,,,,....G,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2093	C	141	....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,....G,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,a..,,..,.,.,,,..,G.,..,...,,.,,.^K.^I.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2094	T	143	....,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,A,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,g,..,,..,.,.,,,..,..,..,...,,.,,...,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2095	T	147	.$.$..,,.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,...A.,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..g,..,.,.,,,..g..,..,...,,.,,...,,,,^K.^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2096	C	145	..,,.,..,..,.,,,......,,,,,,a,..,,.,..,,,.,.,,,....G,....,,G...,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2097	T	148	.$.$,$,$.,..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,.A,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2098	T	144	.$,..,..,.,,,......,,,,,,g,..,,.,..,,,.,.,,,.....,...A,,....,,,,.....,,,,.,,,,.g....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2099	G	145	,..,..,.,,,......,,,,,,,,..,,.c..,,,.,.,,,.....,....,,....,,,,.....,,,,.c,,,.,....,....,,..,.,.,,,,..,,..,.,.,c,..,..,..,...,,.,,...,,,,...,..,^KT^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/2
+phiX174	2100	A	146	,$..,..,.,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....t,....,,,,.....,,,,.,t,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..t...,,.,,...,,,,...,..,.,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2101	A	145	.$.$,$..,.,,,....C.,,,,,,,,..,,.t..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,C.,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2102	G	144	.$.$,$.,,,T.....,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,.T.,,,,...,..,.,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2103	G	145	.$,,,......,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,^K.^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2104	C	145	,$,$,$......,,,,,,,,..,,.,G.,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,a,,..,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2105	T	143	.$.....,,,,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.g.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2106	T	146	.$.$.$..,,,,,,,,..,,.,.A,,,.,.,,,.....,....,,A...,g,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,..^K.^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2107	C	146	.$.$,$,$,$,,,,,..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.a,...,,,,...,..,.,,,,..,,....,,^K.^I.^KG	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/
+phiX174	2108	C	142	,$,$,$,,G.,,.,..,,,.,.,,,.....,....,,.G..,,,,.....,,,,.,,,,.,....,....a,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,....,,...^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2109	C	140	,a.Ga,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.a.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,....,,....^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2110	A	142	,$,$..,,.,..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,C,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,....,,....,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2111	T	142	.$.$,$,$.,..,,,.,.,,,.....,..A.,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,....,,....,,,^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222202
+phiX174	2112	T	139	A$,$..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....g....,,..g.,.,,,,..,g..,.,.,,,..,..,..,...,,.,,...,,,,...,..,A,,,g.A,,....,,....,,,A.^K.	.222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222022
+phiX174	2113	C	139	..,,,.,.,,,.....,....,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,.G,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,....,,....,,,...^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2114	A	142	.$.$,,,.,.,,,.....,....,,....,,,,.....,,,t.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..t...,,.,,...,,t,...,.C,.,,,,..,,..C.,,....,t,...,t,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222022
+phiX174	2115	T	141	,$,$,$.,.,,,A....,....,,....,,,,.....,,,,.,,,,.,....,....,,..g.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,....,,....,,,...,,,.,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2116	T	143	.,.,,,.....,..A.,,....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,...A,g....,,,...,,,.,,^K.^K,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2117	C	144	.$,$.,,,.....,....,,....,,,,.G...,,,,.,,,,G,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,....,,G...,,,...,,,.,,.,,,,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2118	A	148	.$,$,,.....,..CC,,....,,,,.....,,,t.,,,,.,....,.CC.,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,t...,..,.,,,,..,,....,,....,,,...,,,.,,.,,,t.^I.^K.^K.^K,^K,^Kt	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220
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+phiX174	2120	G	145	.$....,....,,....,,,,.....,,,,.,,,,T,....,....,,..,.,.,,,,.T,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,....,,....,,,...,,,.,,.,,,,....,,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2124	C	152	.$.$,$....,,G...,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,....,,....,,,...,,,.,,.,,,,....,,,.,,,.^K.^K.^K.^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2125	G	150	.$.$.$.$,$,$....,,,,.....,,,,.,,,,.,....,....,,..,.,.,,,,T.,,..,.,.,,,..,..,..,...,,.,,...,,,,T..,..,.,,,,..,,....,,.T..,,,...,,,.,,.,,,,....,,,.,,,....,,,^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2129	T	146	.$.$.$..,,,,.,,,,.,....,....,,..g.,.,,,,..,,..,.,.,,g..,..,..,...,,.,,...g,,,...,..,.,,,,..,,....,,....,,,...,,,.,,A,,,,....,,,.,,,....,,,,,..,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2130	C	146	.$.$,$,$,$,.,,,,.,....,....,,..,.,.,,,,..,,..,.a.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,....,,....,,,...,,,.,,.,,,,....,,,.,a,....,,,,,..,,,,,,,^K.^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2131	T	144	,$.,,,,.,....,....,,..g.,.,,,,.A,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,A...,,....,,,...,,,.,,.,,,,....,,,.,,,....,,,,,..,,,,,,,...^K.^K.^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2132	G	145	.$,$,$,,.,....,....,,..,.,.,,,,..c,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,....,,....,,,...,,,.,,.,,,,....,,,.,,,....,,,,,..,,,,,,,T....,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2135	G	147	.$.$..,....,,..,.,.,,,c..,,..,.,T,,,..,..,..,...,,.,,...,c,,...,..c.,,,,..,,....,,....,,,...,,,.c,.,,,,....,,,.,,,....,,,,,..,,,,,,,.....,.,..,,,^K,^K,^K,^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2137	T	151	.$.$,$....,,..,.,.,,,,..,,..,.,.,,,..,.A,..,...g,.,,...,,,,...,..,.,,,,..,,....,,....,,g...,,,.,,.,,,,.A..,,,.,,,....,,,,,..,,,,,,,.....,.,..,,,,,,,..,^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2138	T	151	.$.$.A,,..,.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,....,,....,,,...,,,.,,.,,,,....,,,.,,,....,,,,,..,,,,,,,.....,.,..,,,,,,,..,..,^K.^K.^K,	222/222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2139	T	153	.$.$,$,..,.,.,,,,..,g..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,g,,..,,....,,....,,,...,,,.,,.,,,,....,,,.,,,....,,,,,..,,,,,,,.....,.,..,,,,,,,..,..,..,^K.^K,^K,^K,	2/2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2141	C	151	.$.$,$.,.,,,,..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,.G..,,....,,,...,,,.,,.,,,,....,,,.,,,....,,,,,..,,,,,,,.....,.,..,,,,a,,..,..,.G,.,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2144	G	150	,$,$..,,..,.,.,,,..,..,..,...,,.,,...,,,,...,..,.,,,,..,,T...,,....,,,T..,,,.,,.,,,,.T..,,,.,,,....,,,,,..,,,,,,,.....,.,..,,,,,,,..,..,..,.,c,,,..,,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2263	C	138	.$.$.,,,.,...,,,,..,,,...,.,..,..,,.,,,....,,,,,....,,.,,,G...,,,,.......,,,..,a.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2266	T	137	.$.$.,,,,..,,,...,.,..,..,,.,,,....,,,,,....,,.,,,....,,,,.......,,,..,g.,.,,,,.,.....,.,...,.,..,,....,,.g.,,,.,,,,.,,...,..A,.,,,,,,,.,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2267	T	138	.$,$,,,..,,,...,.,..,..,,.,,,....,,,,,....,,.,,,....,,,,.......,,,..,,.,.,,,,.,.....,.,...,.,A.,,....,,.,.,,,.,,,,.,,...,...,.,,,,g,,.,..^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2268	C	138	,$,$,..,,,...,.,..,.G,,.,,,....,,,a,....,,.,,,....,,,,.......,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,a.,,,,.,,...,...,.,,,,,,a.,...,,^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2269	A	137	,..,,,...,.,..,..,,.,,,....,,,,,....,,.,,,....,,,,.......,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2270	A	138	,$..,,,...,.,..,..,,.,,,....,,,,,....,,.,,,....,,,,.......,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2271	T	138	.$.,,,...,.,..,..,,.,,,....,,,,,....,,.,,,....,,,,.......,,,..,,A,.,,,,.,.A...,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2272	C	140	.$,$,$,G..,.,..,..,,.,,,....,,,,,....,,.,,,...G,,,,.......,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...a...,.,,,,,,,.,...,,..,,.^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2273	A	137	,$...,.,..,..,,.,,,....,,,,,....,,.,,,....,,,,....C..,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2274	T	140	.$.$.,.,..,..,,.,,,....,,,,,....,,.,,,....,,,,.......g,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,g...,...,A,g,,,,,.,A..,,..,,...,^K.^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2275	G	140	.$,$.,..,..,,.,,,....,,,,,....,,.,,,....,,,,.......,,,..,,.,.,,,,.,..T..,.,...,.,..,,....,,.,T,,,.,,,,.,,...,...,.,,,,,,,.,..T,,..,,...,..,,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2276	A	140	.$,$..,..,,.,,t....,,,,,...C,,.,,,....,,,,.......,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,t,,,,,.,...,,..,,...,..,,.,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2277	C	141	.$.$,$..,,.,,,....,,,,,....,,.,,,....,,,,.......,,,..,a.,.a,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,..^K.^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2278	T	140	.$.,,.,,,....,,,,,....,,.,,,....,,,g.......,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2279	T	145	.,,.,,,....,,,,,A...,,.,,,....,,,,...A...,,,A.,,.,.,g,,.,.....,.,...,.g..,,.A..,,.,.,g,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,^K.^K.^K.^K.^K,^I,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2280	C	147	.$,$,.,,,....,,,,,....,,.,,,....,,,,.......,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,.G.,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2281	G	148	,.,,,....,,,,,....,,.,,,..T.,,,,.......,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2282	T	148	,$.,,,....,,,,,....,,.,,,....,,,,.......,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2283	G	148	.,,,....,,,,,.T..,,.,,,....,,,,.......,,,..,,.,.,,,,.,.....,.,...,.c..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2284	A	150	.$,$,,....,,,,,....,,.,,,....,,,,.......,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2285	T	150	,$,$....,,,,,....,,.,,,....,,,,.......,,,..,,.,A,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,..A,...,.g,,,,,,.,...,,..,,...,..,,.,.....,,....,,g,.,,,.,^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2286	A	150	....,,,,,....,,.,,,....,t,,.......,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.t,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2287	A	154	.$.$.$.$,$,$,$,$,$....,,.,,,....,,,,.......,,,..,,.,.,,,,.,.....,.,...,C,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,^K.^K,^K,^I,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2288	A	146	.$.$.$.$,$,.,,,....,,,,.......,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2289	A	143	,.,,,....,,,,.......,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,.C.,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,^I.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2290	G	144	,$.,c,T...,,,,.......,,,..,,T,.,,,,.,.....,.c...,.,..,,....,,.,.,,,.,,,,.,,...c...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2292	T	142	.$.$.$.$,$,$,,.......,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,g,.,..,,.,,,,.,...,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2293	T	137	,$,$..A....,,,..,,.,.,,,,.,.....g.,...,.,..,,....,,.,A,,g.g,,,.,,...,...,.,,,,,g,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2294	G	135	.$......,,,..,,.c.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...c...,.,,,,,,,.,...,,..,,...,..,,.c.....,,....,,,,.,,,.,..,,.,,c,.,...,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2295	A	136	.$.$....,,,..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...t.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2296	G	138	.$...,,,.T,,.,.,,,,.,.....,T,...,.,..,,....,,.,.,,,.,,,,.,,.T.,...,.,,,,,,,.,..T,,..,,...,..,,.,...T.,,....,,,,.,,,.,..,,.,,,,.,T..,,.,^K.^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2297	T	139	.$.$.$,$,$,..,,.,.,,,g.,.....,A,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,g,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2298	G	136	,$..,,.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,T,,,,.,,...,...,.,,,,,,,.,...,,..,c...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2299	T	136	.$.$,$,$.,.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,.,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2300	G	135	.$,$.,,,,.,.....,.,...,.,..,,....,,.,.,,,.,,c,.,,...,...,.,,,,c,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,.,,^K.^I.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2303	G	132	,$,$,,.,.T...,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,.,,..,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2304	T	131	,$,.,.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,A,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,.,,..,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2305	T	132	,$.,.....,.,...,.,..,g....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.gg,,.,...,,.,..,,,,.,,..,.^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2306	A	132	.$,$.....,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,C.,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,.,,..,...^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2307	T	130	.$.$.$..,.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,g,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,.A.,,.,..,,g,.,,..,...,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2308	A	129	.$.$,$.,...,.,..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,.,,..,...,^I,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2310	C	130	.$,...,.,..,,....,,.,G,,,.,,,,.,,...,...a.,,,,,,,.,G..,,G.,,...,..,,.,.G...,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,.,,..,...,,,.^K.^K.^K,	2/22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2311	G	130	...,.,..,,....,,.,.,,,.c,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,T,TT.,,.,..,,,,.,,..,...,,,...,^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2312	C	131	.$.$.,.,..,,....,,.,.,,,.,,,a.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,a,G,,,.,..,,.,,,,.,...,,.,..,,,,.,,..,...,,,...,..^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220
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+phiX174	2314	G	132	.$,$..,,....,,.,.,,,.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,.,,..,...,,,...,T.,.,^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2317	G	131	.$.$.$.$,$T,.,,,.,,,,.,,...,...c.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,T,,,.,..,,.,,,,.,.T.,,.,..,,,,.,,..,...,c,...,..,.,..,..,,.,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2318	C	126	.$,$.,,,.,,,,.,,...,...,.,,,,,a,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,.,,..,...,,,...,..,.,..,..,,.,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2320	G	125	,$,$.,,,,.,,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,.,,..c...,,,...,..,.,..,..,,.,^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2321	T	125	.$,$,,,.,,...,...,.,,,,,,,.,...,,..g,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,.A,,,,.,,..,...,,g...g.A,.,..,..,,.,..,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2324	A	124	,$.,,...,...t.,,,,,t,.,...,,C.,t...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,.,,..,...,,,...,..,C,..,..,,.,..,.,.,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2325	A	123	.$,$,...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,.,,.C,...,,,...,..,.,..,..,,.,..,.,.,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2326	A	122	,$...,...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,.,,..,...,,,...,..,.,..,..,,.,..,.,.,,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2327	T	123	.$.$.$,$...,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.g..,,.,,,,.,...,,.,..,,,,.,,..,...,,,...,..,.,..,..,,.,..,.,.,,.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2328	T	120	.$..,.,,,,,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,A.,,,,.,,..,...,,,...,..,.g..,..,,.,..,.,A,,.,,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2329	T	122	.$.$,$.,,,,,,,.,...,,..,,...,..,,.,.....,,.A..,,,,.,,,.,..,,.,,g,.,...,,.,..,,,,.,,..,...,,,...,..,.,..,..,,.,..,.,.,,.,,.^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2330	T	119	.$,,,,,,,.,...,,.A,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,.,,..,...,,,...,..,.,..,..,,.,..,.,A,,.,,...,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2331	A	119	,$,$,,,,,.,...,,..t,...,..,,.,.....,,....,,,,.,,,.,..,,.,,t,C,...,,.,..t,,,.,,..,...,,,...,..,.,..,..,,.,..,.,.,,.,,...,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2332	A	123	,$,$,,,.,...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,C,...t,.,..,,,,.,,..,...,t,...,..,.,..,..,,.,..,.,.,,.,,....,.^K.^K.^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222202222222222
+phiX174	2333	T	125	,$,$,$.,...,,..,,...,..,,.,.....,,..A.,,,,.,,,.,..,,.,,,,.,...,,.,..,g,,.,,..,...,,,...,..,A,..,..,,.,..,.,.,,.,,....,.....,^K.^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220
+phiX174	2334	T	124	.$,$...,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,,.,,..,...,,,...,..,.,..,..,,A,..,.,.,,.,,....,.....,...g^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220/2
+phiX174	2335	T	125	.$.$.,,..,,...,..,,.,.....,,....,,,,.,,,.,..,,.,,,,.,...,,.,..,,,g.,,..,...,,,...,..,.,..,..,,.,..,.,.,g.,,....,.....,...,.,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/2222
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+phiX174	2532	T	148	.$.,,,.,,.,..,,,..,.....,,,A,...,.,,g..,,,...,.,..,,.,,.A,,.,,....,.A..,.,.,,.,..,,,,.,.,...,,.A..,,,,,,,,.,.,.,.....,.,..,,,..,,,..,.,,....,,,,,..^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2533	T	147	.,,,.,,.,..,,,..,.....,,,.,...,.,,,..,,g...,.,..,,.,,..,,.,,....,....,.,.,,.,..,,,,.,.,...,,.A..,,,,,,,,.,.,.,.....,.,..,,,..,g,..,.,,....,,,,,...,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2534	T	147	.$,,,.,,.,..,,,..,.....,,,.,...,.,,,..,,,...,.,..,,.,,..,,.,,....,....,.,.,,.g..,,,,.,.,...,,....,,,,,,,,.,.,.,.....,.,..,,,..,,,..,.,,....,,,,,...,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2535	G	146	,$,,.,,.,..,,,..c.....,,,.,...,.,,,..,,,...,.,..,,.,,..,,.,,....,..T.,.,.,,.,..,,,,.,T,...,,....,,,,,,,,.,.,.,...T.,.,..,,,..,,,..,.,,....,,,,,...,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2536	A	145	,$,$.,,.,..,,,..,.....,,,.,...,.,,,..,,,...,.,..,,.,,..,,.,,....,....,.,.,,.,..,,,,.,.,...,,....,,t,,,,,.,.,.,.....,.,..,,,..,,,..,.,,....,,,,,...,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2537	C	147	.$,$,$.,..,,,..,.....,,,.,...,.,,,..,,,...,.,..,,.,,..,,.,,....,....,.,.,,.,..,,,,.,.,...,,....,,,,,,,,.,.,.,.....,.,..,,,..,,,..,.,,....,,,,,...,^K.^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2538	G	147	.$,$..,,,..,.....,,,.,...,.,c,..,,,...,.,..,,.,,..,,.,,....,....,.,.,,.,..,,,,.,.,...,,....,,,,,,,,.,.,.,.....,.,..,,,..,,,..,.,,....,,,,,...,.,,,^K.^K.^K.	222220222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2539	G	148	.$.$,,..,.....,,,.,...,.,,,..,,,...,.,..,,.,,..,,.,c....,...T,Tc.,,.,..,,,,.,.,.T.,,..T.,,,,,,,,.,.,.,T....,.,..,,,..,,,..,.,,....,,,,,...,.,,,...^K.^K.^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2540	T	148	,$,..,....A,,,A,...,.,,,..,,,...,.,..,,.,,..,,.,,....,....,.,.,,.,..,,,,.,.,...,,....,,,,,,,,.,.,.,.....,.,..,,,..,,,..,.,,....,,,,,...,A,,,.......^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2545	G	147	.$.$.$.$,$,$,$.,...,.,,,..,,,...,.,..,,.,,..,,.,,....,....,.,.,,.,..,,,,.,.,...,,....,,,,,,,,.,.,.,.....,.,..,,,..,,,..,.,,....,,,,,...,.,,,........,.,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2547	T	141	,$...,.,,,..,,,...,.,..,,.,,..,,.,,....,....,.,.,,.,..,,,,.,.,...,,....,,,,,,,,.,.,.,.....,.,..,,,..,,,..,.,,..A.,,,,,...,.,,,........,.,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2548	G	143	.$..,.,,,..,,,...,.,..,,.,,..,,.,,....,....,.,.,,.,.T,,,,.,.,...,,....,,,,,,,,.,.,.,.....,.,..,,,..,c,..,.c,....,,,,,...,.,,,........,.,,,,,,^I.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/
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+phiX174	2559	T	150	.$.$,$,$.,,..,....,.,.,,.,..,,,,.,.,...,,....,,,,,,,,.,.,.,.....,.,..,,,..,,g..,.,,....,,,,,...,.,,,........,.,,,,,,..,,,........,.,...,,,,,,...,,.,,,,^K.^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2560	T	150	.$,$,$..,....,.,.,,.,..,,,,.,.,...,,....,,g,,,,,.,.,.,.....,.,..,,,..,,,..,.,,....,,,,,...,.,,,........,.,,,,,,..,,,........,.,...,,,,g,...,,.,,,,...^K.^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2561	T	154	.$.$,$....,.,.,,.,..,,,,.,.,...,,....,,,,,,,,.,.,.,.....,.,..,,,..,,,..,.,,....,,,,,...,.,,,....A...,.,,,,,,..,,,........,.,...,,,,,,...,,.,,,,......,^K.^K.^Kg^K,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/2202
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+phiX174	2591	T	138	.$.$,$,,..,.,,....,,,,,...g.,,,........,.,,,,,,..,,,........,.,...,,,,,,...,,.,,,,......,..,,,,,.....,.,.,,..,,,,,,.,,,,,...,...,.g,.,.,,,.,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2608	G	141	.$.$.$.$.,.,,,,,,..,,,........,.c...,,,,,,...,,.,,,,......,..,,,,,.....,.,.,,..,,,,,,.,,,,,...,...,.,,.,.,,,.,,..,,.,,..,,.,,...,,....,,...,,,^I.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2664	T	132	.$.$,$,$.,,...,,....,,...g,,..,..,,..,,,.,,,...,.,,,,..,,.,.,.,,.,,,...,,,AA,,.,.,,,..,,.....,,......,,,,.,..,,.,..,....,...,,,,..,,.,^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2665	T	130	.$,$,$...,g....,,...,,,..,..,,.A,,,.,,,...,.,,,,..,,.,.,.,,.,,,...,,,..,,.,.,,,..,,.....,,......,,,,.,..,,.,..,....,...,,,,..,,.,..^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2666	T	129	.$..,,....,,...,,,..,..,,..,,,.,,,...,.,,,,..,,.,.,.,,.,,,...,,,..,,.,.,,,..,,.....,,......,,,,.,..,,.,..,....,...,,,,..,,.,....^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2669	T	128	,....,,...,,,..,..,,..,,,.g,,...,.,,,,..,,.,.,.g,.,,,...,,,..,,.,.,,,..,,.....,,......,,,,.,..,,.,..,....,...,,,,..,,.,.....,,.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2675	T	131	.$.$.$,$,,..,..,,..,,,.,,,...,.,,,,..,,.,.,.,,.,,,...,,,..,,.,.,,,..,,.....,,......,,,,.,..,,.,..,....,...,,,,..,,.,..A..,,.,,..,..,,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2676	T	127	,$,$..,..,,..,,,.,,,...,.,,,,..,,.,.,.,,.,,,...g,,..,,A,.,,,..g,.....,,......,,,,.,..,,.,..,....,...,,,,..,,.,.....,g.,,..,..,,.,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2677	G	129	.$.$,$..,,..,,,.,,,...,.,,,,..,,.,.,.,,.,,,...,,,..c,.,.,,,.T,,.....,,......,,,,.,..,,.,..,....,...,,,,..c,.,.....,,.,,..,..,,.,^KT^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220222
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+phiX174	2679	G	132	.$,,T.,,,.,,,...,.,,,,..,,.,.,.,,.,,,...,,,..,,.,.,,,..,,.....,,......,,,,.,..,,.,..,..T.,...,,,,..,,.,.....,c.,,..,..,,.,..,,..^K.^K.^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2680	T	133	,$,$..,,,.,,,...,.,,,,..,,.,.,.,,.,,,...,,,..,,.,.,,,..,,.....,,......,,,,.,..,,.,..,....,...g,,,..,,.,.....,,.,,..,..,,.,..,,......,^K.^I,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2685	T	129	.$.$.$,$.,,,,..,,A,.,.,,.,,,A..,,,..,,.,.,,,..,,.....,,......,,,,.,..,,.,..,....,...,,,,..,,.,.....,,.,,..,..,,.,..,,A.....,.,,,...,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2686	T	127	.$,,,,..,,.,.,.,,A,,,...,,,..,,.,.,,,A.,,....A,,......,,,,.,..,,.,..,....,...,,,,..,,.,.....,,.,,..,..,,.,..,,......,.,,,...,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2691	T	134	.$.,,.,.,.,,.,,,...,,,..,,.,.,,,..,,.....,,......,,,,.,..,,.g..,....,...,,,,..,,.,.....,g.,,..,..,,.,..,,......,.,,,...,,,,.,..,..g^K,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222202222
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+phiX174	2693	C	135	.$,$.,.,,.,,,...,,,..,,.,.,,,..,,.....,,......,,,,.,..,,.,..,....,...,,,,..,,.,....G,,.,,..,..,,.,..,,......,.,,,...,,,,.,G.,..,,,,,..,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2698	A	136	,$,$...,,,..,,.,.,,,..,,.....,,......,,,,.,..,,.,..,....,...,,,,..,,.,.....,,.,,..,..,,.,..,,......,.,t,...,,,,.,..,..,,,,,..,.,.,t,...,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2709	T	144	.$.$.$..,,......,,,,.,..,,.,..,....,...,,,,..,,.,.....,,.,,..,..,,.,..,,......,.,,,...,,,,.,..,..,,,,,..,.,.,,,...,,..,....,,,...,,.,,,.,,,.,,...^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2711	C	141	.$,$......,,,,.,..,,.,..,....,...,,,,..,,.,.....,,.,,..,..,,.,..,,......,.,a,...,,,,.,..,..,,,,,..,.,.,,,...,,..,....,,,...,,.,,,.,,,.,,....,^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2712	C	139	.$.$.$.$..,,,,.,..,,.,..,....,...,,,,..,,.,.....,,.,,..,..,,.,..a,..G...,.,,,...,,,,.,..,..,,,,,..,.,.,,,...,,..,....,,,...,,.,,,.,,,.,,....,..	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2718	T	139	.$.$,$,.,..,....,..A,,,,..,,.,.....,,.,,..,..,g.,..,,......,.,,,...,,,,.,..,..,,,,,..,.,.,,,...,,..,....,,,...,,.,,,.,,,.,,....,..,.,.,...,,,.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2719	G	141	,$.,..,....,...,,,,..,,.,.....,,.,,..,..,,.,T.,,......,.,,,...,,,,.,..,..,,,,,..,.,.c,,...,,..,....,,,...,,.,,,.,,,.,,....c..,.,.,...,,,.^K.^K.^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2720	T	142	.$,$..,A...,...,,,,..,,.,.....,,.,,..,..,,.,..,,......,.,,,...,,,,.,..,..,,,,,..,.g.,,,...,,..,....,,,..A,,.,,,.,,,.,,....,..,.,.,...,,,.....,^K.^K,	2222202222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2721	T	142	.$.$,$....,...,,,,..,,.,.....,,.,,..,..,,.,..,,......,.,,,...,,,,.,..,..,,,,,A.,.,.,,,...,,..,....,,,...,,.,,,.,,,.,,....,..,.,.,...,,,...A.,.,^KA^K,	22202222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222//
+phiX174	2722	T	141	.$.$.$.$,$...,,,,..,,.,.....,,.,,..,..,,.,..,,......,.,,,...,,,,.,..,..,,,,,..,.,.,,,...,,..,..A.,,,...,,.,,,.,,,.,,....,..,.,.,...,,,.....,.,.g^K,^K,	022222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/22
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+phiX174	2724	T	139	.$.$,,,,..,g.,.....,,.,,..,..,,.,..,,......,.,,,...,,,,.,..,..,,,,,..,.,.,,,...,,..,....,,,...,,.,,,.,,,.,,....,..,.,.,..A,,,.....,.,.,,g.,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2849	C	142	.$.$...,,..,..,,.,,.,,....,,,,.,...,,.....,,,.....,,.,,.,..,,.,,...,,.,......,,,,,......,,..,,..,,..,.,..,,,,.....,...,.,.,.,,.,...,.......,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2850	T	143	.$.$.$,$g$..,..,,.,,.,,....,,,,.,...,,.....,,,.....,g.,,.,..,,.,,...,,.g......,,g,,......,,..g,..,,..,.,..,,,,.....,...,.,.,.g,.,...,.......,,,,,^K.^K.^K.	2222/222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2851	A	138	.$.$,$..,,.,,.,,....,,,,.,...,,.....,,,.....,,.,,.,..,,.,t...,,.,......,,,,,......,,..,,..,,..,.,..,,,,.....,...,.,C,.,,.,...,.......,,,,,...	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2852	C	137	.$.$,,.,,.,,....,,,a.,...,,.G...,,,.....,,.,,.,..,,.,,...,,.,..G...,,,,,......,,..,,..,,..,.,..,,,,.....,...,.,.,.,,.,...,.......,,,,,...^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2858	G	133	.$.$,$,$,$,$.,...,,.....,,,.....,,.,,.,..,,.,,...,,.,..T...,,,,,......,,..,,..,,..,.,..c,,,.....,...,.,.,.,,.,...,.....T.,,,,,......,,..,.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	2977	G	160	.$.$.$.$.$,$,$..,.,..,,..,.,..,..,.,.,,,,,,.,.,,,,,,.,.c....,,,.,.,,,,.,.,.....T,,,...,,,,,,.,..cT..,,,,,,,T..,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2978	C	155	.$.$,$.,..,,..,.,..,..,.,.a,,,,,.,.,,,,,,.,.,....,,,.,.,,a,.,.,......,,,...a,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,.,,^I.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2979	G	154	.$,$..,,..,.,..,..,.,.,,,,,,.,.,,,,,,.,.,T...,,,.c.,,,,.,.,......,,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2980	C	157	.$.,,..,.,..,..,.,.,,,,,,.,.,,,,,,.,.,....,,,.,.,,,,.,.,......,,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,..G.,,,G,,,,.,..,....,,,.,,..,,.,,^K.^K.^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2981	C	157	.$,$,$..,.,..,G.,.,.,a,,,,.,.,,,,,,.,.,....,,,G,.,,,,.,.,......,,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,.G,....,,,.,,..,,.,,..,,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2982	A	158	.$.,.,..,..,.,.,,,,,,.,.,,,,,,.,.,....,,,C,.,,,,.,.,......,,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,.^K.^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2983	T	160	.$,$.,..,..,.g.,,,,,,.,.,,,,,,.,.,....,,,.,.,,,,.,.,......,,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,^K.^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2984	G	161	.$,$..,.T,.,.,,,,,,.,.,,,,,,.,.,....,,,.,.,,,,.,.,......,,,...,,,,,,.,..,...,,,,,,,...c,,T.,,.,,,.,,,T,...,,,.,,,....,,c.,,,,.,..,....,,,.,,..,,.,,..,,,....,..T^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2985	T	160	.$.$,$..,.,.,,,,,,.,.,,,,,,.,.,....,,,.,.,g,,.,.,..A...,,,...,,,,,,.,..,...,g,,,,g...,,,..,,.,,,.,,,A,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2986	C	158	.$.$,$.,.,,,,,,.,.,,,,,,.,.,....a,,.,.,,,,.,.,......,,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,a.,,,.,...,,,.,,,....,,,.,,,a.,..,..G.,,,.,,..,,.,,..,,,....,G...,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2987	T	156	.$,$.,,,,,,.,.,,,,,,.,.,....,,,.,.,,,,.,.,......,,,...,,,g,,.,..,...,,,,,,,...,,,..g,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2988	A	156	.$,$,$,$,$,$,.,.,,,,,,.,.,....,,,.,.,,,,.,.,......,,,...,,,,,,.,..,C..,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....t,,.,,,,.,..,....,,,.t,..,,.,,..,,,....,....,,,,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2989	A	152	,$.,.,,,,,,.,.,....,,,.,.,,,,.,.,......,,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....t,,.,,..,,.,,..,,,....,....,,,,,.,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2990	A	151	.$,$.,,,,,,.,.,....,,t.,.,,,,.,.,......,,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2991	T	151	.$,$,$,$,$,,.,.,....,,,.,.,,,,.,.,......,,,.A.,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,g,.,,,,.,..,....,,,.,,..,,.,g..,,,....,A...,,,,,.,.,^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2992	T	146	,$,$.,.,....g,g.,.,,,,.,.,......,,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,g,.,..,....,,,.,,..,,.,,..,,,....,....,,,g,.,.,..	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2993	G	145	.$,.,....,,,.,.,,,,.,.,......,,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.c...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,...T,....,,,,,.,.,..^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2994	T	147	,$.,....,,,.,.,,,,.,.,......,,,...,,,g,,.,..,...,,,,,,,A..,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..g....,,,.,,..,,.,,..,,,....,...Ag,,,,.,.,...^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2995	T	148	.$,$....,,,.,.,,,,.,.,......,,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2996	T	147	.$...,,,.,.,,,,.,.,......,,,...,,,,,,.,..,...,,,,,g,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2997	G	147	.$.$.$,$,$,$.,.,,,,.,.,......,,,T..,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,..T.,....,,,,,.,.,...,,,.,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2998	G	142	.$,$.,,,,.,.,......,,,...,,,,,,.,..,...,,,,,,c...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...c,,.,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	2999	A	141	.$,$,$,$,$.,.,......,,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.t...,,,.,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3000	G	137	.$,$.,......,,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,TT.,,,.,,,....,,,.,,,,.,..,....,,,.,,..c,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,^K.	22220222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3001	G	137	.$,$.....,,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,..T.,....,,,,,.,.,...,,,.,,,,,.^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3002	C	136	.$.$...,,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,G...,,,.,,aa.,..,....,,,.,,..,,G,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3003	G	135	.$.$.$,$,,...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.c.,...,,,.,,,,,...,.^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3004	G	134	,$,$...,,,,,,.,..,...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3005	T	134	.$.$.$,$,$,$,,,.,..,...,,,,,,,...,,,..,,.g,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,.A..,,,,,.,.,...g,,.,,,,,...,.,,,,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3006	C	133	,$,$,$.,..,..G,,,,,,,...,,a..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,^K.^K.^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3007	A	131	.$,$..,...,,,,,,,...,,,..,,.,,,.,,,.,...t,,.t,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,.C..,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3008	A	136	.$.,C..,,,,,,,...,,,..,,.,,,C,,,.,...,,,.,,,....,,,.,,,,.,C.,....,,,.,,..,,.,,C.,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,.^K.^K.^K.^K.^K,^Kt^K,	222/2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/22/2
+phiX174	3009	A	138	.$,$...,,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..t....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,,^K,^K,^K,	22/2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/2222222
+phiX174	3010	A	139	.$.$.,,,,,,,...,,,..,,.,,,C,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,,,,,^I.^I,^K,	/2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/2222222222
+phiX174	3011	A	138	.$,$,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,.C..,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.t,,,,...,.,,,,.,....,...C.,,,,,,.,,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222022222222222
+phiX174	3012	G	137	,,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..c,,....,....,c,,,.,.,...,,,.,,,,,...,.,,,,.,T...,.....,,,,,,.,,.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3013	C	142	,$,,,,,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.a,,,.,..,....,,,G,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,a,.,....,.....,,,,a,.,,..^K.^K.^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3014	C	142	,$,$,$,$,...,,,..,,.,,,.,,,.,...,,,.,,,....,,a.,,,a.,..,....,,,.,,..,aG,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,,,,,.a,....,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3015	G	139	,...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,T.,,,....,.T..,,,,,.,.,...,,,.,,,,,...,.,,,c.,....,.....,,,,,,.,,....,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3016	C	140	,..Ga,,..,,.,,a.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,..G,,,.,,,,,...,.,,,,.,....,.....,,,,,,.,,....,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3017	C	142	,$..G,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,,,,,.a,....aa,,,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3018	T	142	...,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,gg.,,..,,.,,..,,,....,...A,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,...A.,,,,,,.,,....,,,,,,,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3019	C	145	.$.$.$,,,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,.^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3020	C	144	,$,$,..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.a,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,a.,....,.....,,a,,,.,,....,,,,,,,,..,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3021	G	143	,$..,,.,,,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,^I.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3022	G	143	..,,.,,,.,,,.,...,,,.,,,....,,,.,c,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.^Kc	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220
+phiX174	3023	T	144	.$.,,.,,,.,,,.,A..g,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,.A..,.....,,,,,,.,,....,,,,,,,,..,,.,.,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3024	G	145	.$,$,$.,,,.,,,.,...,,,T,,,....,,,.,,,,.,..,....,,,.,,..,,T,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,,,,,.,,.T..,,,,,,,,..,,.,.,.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3025	G	145	.$,$,$,.,,,.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,T,..T.,.....,,,,,,.,,....,,,,,,,,..c,.,.,..,^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3026	C	145	,$.,,,.a...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,a..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.a....,.....,,,,,,.,,....,,,a,,,,..,,.,.,..,.,,^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3027	A	145	.$,$,$,$.,...,,,.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.,,..,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3028	T	144	.$,$...,g,.,g,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,g.,.,.A.,,,.,,,,,...,.,,,,.,....,.....,,g,,,.,,....,,,,,,,,..,,.,.,..,.,,.A,,^K.^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3029	T	143	.$..,,g.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,g,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,g,,,.,,....,,,,,,g,..,,.,.,..,.,,..,,...^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3030	C	146	.$.$,$,$,$.,,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.a....,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.,,..,,...,^K,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3031	A	143	.$,$,,....,,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....t.....,,,,,,.,,....,,,,,,,,..,,.,C,..,.,,..,,...,,,,,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3032	A	142	,$,$....,,,.,,,,.,..,....t,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,..C.,.....,,,,,,.,,....,t,,,,,,..,,.,.,..,.,,..,,...,,,,,.,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3033	G	142	.$.$.$.$,$,,.,,,,.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,..T,.,,,,.,....,.....,c,c,,.,,....,,c,,,,,..,,.,.,..,.,,..,,...,c,,,.,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220
+phiX174	3034	G	137	,$,$.,,,,.,..c....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,c,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.c,..,,...,,,,,.,,.c	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220
+phiX174	3035	T	137	.$,$,$,$,.,..,....,,,.,,..,,.,,..,,,...A,....,,,,,.,.,...,,,.,,,,,...,.,g,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.,,..,,...,,,,,.,,.,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3036	G	136	,$.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.,,..,,...,,,,,.,,.,.,^K.^IT^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/2
+phiX174	3037	A	136	.,..,....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,..C,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,C,..,.,,..,,...,,,,,.,,.,.,...^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3038	T	137	.$,$..,....,,,.,,..,,.,,..,,,....,....,,,g,.,.,.A.,,,.,,,,,...,.,,,,.,A...,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.,,..,,...,,,,,.,,.,.,...,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3039	G	137	..,....,,,.,,..,,.,,..c,,....,....,,,,,.,.,...,,,.c,,,,...,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.,,..,,...,,,,,.,,.,.,..T,,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3040	T	138	.$.$,$....,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,g.,,,,,...,.,,,,.,....,.....g,,,,,.,,....,,,,,,g,..,,.,.,..,.,,..,,...,,,,,.,,.,.,...,,.,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3041	G	137	.$.$.$.,,,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.c,,,.,...T,.....,,,,,,T,,....,,,,,,,,..,,.,.,..,.,,..,,...,,,,c.,,.,.,...,,.,,^K,^I,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3042	C	135	.$,$,$,.,,..,,.,,..,,,....,....,,,,,.a.,...,,,.,,,,,...,.,,,,.a....,.....,,,a,a.,,....,,,,,,,,..,,.,.,..,.,,..,,...,,,,,.,,.,.,...,,.,,,,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3043	T	132	,.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.,,..,,...,,,,,.,,.,.,...,,.,,,,.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3044	T	134	,$.,,..,,.,,..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.,,..,,...,,,,,.,,.,.,...,,.,,,g.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3048	A	133	,$..,,,....,....,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.,.C,.,,..,,...,,t,,.,,.,.,...,,.,,,,..,,.,..,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3049	C	135	.$.$,$,$,$....,....,,,,,.,G,...,,,.,,,,,G..,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.,,..,,...,,,,,.,,.,.,...,,.,,,a..,,.,..,,,,^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3050	C	132	.$...,.G..,,,,,.,.,...,,,.,,,,,..G,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.,,..,,...,,,,,.,,.,.,...,,.,a,,..,,.,..,,,,.,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3051	G	133	.$.$.$,$....,,,,,.,.,.T.,,,.,,,,,...,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.,,..,,...,,,,,.,,.,.,.T.,,.,,,,..,,.,..,,,,.,,.,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3052	A	130	.$.$.$.,,,,,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.,,..,,...,,,,,.,,.,.,...,,.,,,,..,,.,..,,t,.,,.t.,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3053	T	131	.$,$,$,,,.,A,...,,,.,,,,,...,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.,,..,,...,,,,,Ag,.,.,...,,.,,,,..,,.,..,,,,.,,.,.,,^K.^K,^I,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3054	A	130	,$,,.,.,...,,,.,,,,,...,.,,,,.,....,.....,,,,t,.,,....,,,,,,,,..,,.,.,..,.,,..,,.C.,,,,,.,,.,.,...,,.,,,,..,,.,..,,,,.,,.,C,,.,,,^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3055	A	130	,$,.t.,...,,,.,,,,,C..,.,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.,,..,,...,,,,,.,,.,.,...,,.,,,,..,,.,..,,,,.,,.,.,,.,,,..^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3056	C	131	,$.,.,...,,,.,,,,,...,.,,,,.,....,..G..,,,,,a.,,....,,,,,,,,..,,.,.,..,.,,..,,...,,,,,.,,.,.,...,,.a,,,..,,.,..,,,,.,,.,.,,.,,,..,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3057	A	131	.$,$.,..C,,,.,,,,,...,C,,,,.,....,.....,,,,,,.,,....,,,,,,,,..,,.,.,..,.,,..,,C..,,,,,C,t.,.,...,,.,,,,..,,.,..,,,,.,,.,.,,.,t,..,..^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3064	T	140	.$,$,,,,...,.g,,,.,....,..A..,,,,,,.,,....,,,,,,,,..,,.,.,..g.,,..,,...,,,,,.,,.,.,...,,.,,,,..,,.,..,,,,.,,.,.,,.,,,..,.....,.,.,..,,,.^K.^K.^K.^K.^K.^I,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3103	G	137	.,...,,.c,,,T.,,.,..,,,,.,,.,.,,.,,,..,...T.,.,.,..,,,......,..,,,.....,,,....,,,.,,..,,...,.,.,,,.,,,,..,,.,.,.,..,..,,..,.,.,,,..,..,,^I,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3105	T	140	.$.$.$g,.,,,,..,,.,..,,,,.,,.,.,,.,,,..,.....,.,.,..,,,......,..,,,.....,,,....,,,.,,..,,...,.,.,,,.,,,,..,,.,.,.,..,..,,..,.,.,,,..,..,,,^K.^K.^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3292	T	129	.$,$.,..,,,,...,,...,,,..,,..,..,,...,...,,..,.,,,.,,.,,.,,,,..,.,.,..,,,.,,,,.,,..,,,,,,,.,,,,,.,,,,.g,..g,g..,,.,....,,.,,,,.,..^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3294	G	133	.$,$..,,,,...,,...,,,..,,..,..,,...,...,,..,.,,,.,,.,,.,,,,..,.,.,..,,,.,,,,.,,..,,,,,,c.c,,,,T,,,,.,,..,,,..,,.,....,,.,,,,.,....,,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3295	C	131	.$.$,$,$,,...,,...,,,..,,..,..,,...,...,,..,.,,,.,,.,a.,,,,..,.,.,..,,,.,,,,.,,..,,,,,,,.,,,,,.a,,,.,,..,,,..,,.,....,,.,,,,.,....,,,.,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3296	T	128	,$,$...,g...,,,..,,..,A.,,...,...,,..,.,,,.,,.,,A,,,,..,.,.,.A,,,.,,,,.,,..,,,g,,,.,g,,,.,,,,.,,..,,,..,,.,....,,.,,,,.,....,,,.,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3297	G	127	.$..,,...,,,..,,..,..,,...,...,,..,.,,,.,,.,,.,,,,..,.,.,..,,,.,,,,.,,..,,,,,,,.,,,,,.,,,,.,,..,,,..,,.,....,,.,,,,.,....,,,.,c^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3555	C	125	.,,,,,,,,,,..,....,,...,,.,....,,,,,.,,.,,.,,..,.,,,.,,.,.,.,....,.,..,..,..,,,,,,....,.,,,,.,...,,,,,,.......,,,,.,,,...,.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3556	G	129	.$,$,$,,,,,,,,..,....,,...,,.,....,,,,,T,,.,,.,,..,.,,,.,,.,.,.,....,T,..,..,..,,,,,,....,.,,,,.,...,,,,,,.......,,,,.,,,...,..,^K.^K.^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3557	C	129	a$,$,$,,,a,..,....,,...,,.,....,,,,,.,,.,,.,,..,.,,a.,,.,.,.,....,.,..,.G,.G,,,,,,....,.,,,,.,...,,,a,,.......,,,,.,,,...,..,....^K,^K,^K,	/22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3558	G	133	,$,$,$,$,..,....,,...,,.,....,,,,c.,,.,,.,,.T,.,,,.,,.,.,.,....,.,..,..,..,,,,,,....,.,,,,.,...,,,,,,.......,,,,.,,,...,..,....,,,^K.^K.^K.^K.^K.^I,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3559	T	131	,$..,....,,...g,.,....,,,,,.,,.,,.,,..,.,,,.,,.,.,.,....,.,..,..,A.,,,,,,....,.,,,,.,...,,,,g,.......,,,,.,,,...,..,....,,,.....,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3560	T	131	.$.,....,,...,,.,....,,,,,.,,.,,.,,..,.,,,.,,.,.,.,....,.,..,..,..,,,,,,....,.,,,,.,...,,,,,,.......,,,,.,,,...,..,....,,,.....,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3561	G	132	.$,$T...,,...c,.,....,,,,,.,,.,,.,,..,.,,,.,,.,.,.,....,.,..,..,..,,,,,,....,.,,,,.,...,,,,,,.......,,,,.,,,...,..,....,,,.....,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3562	C	133	.$...,,...,,.,....,,,,,.,,.,,.,,..,.,,,.,,.,G,.,....,.,..,..,..,,,,,,....,.,,,,.,...,,,,,,.......,,,,.,,,...,..,....,,,.....,,,,,,,^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3563	G	136	.$.$.$,,...c,.,....,,,,,.,,.,,.,,..,.,,,.,,.,.,.,....,.,..,..,..,,,,,,....,.,,,,.,...,,,,,,.......,,,,.,,,...,..,....,,,.....,,,,,,,.,,^K.^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3564	T	135	,$,$...,,.,....g,,,,.,,.,,.,,..,.,,,.,,.,.,.,....,.,..,..,..,,,,,,....,.,,,,.,...,,,g,,...A...,,,,.,,,...,..,A...,,g.....,,,,,,,.,,...,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3565	C	133	.$.$.$,$,$.,..G.,,,,,.,,.,,.,,..,.,,,.,,.,.,.,....,.,..,..,..,,,,,,....,.,,,,.,...,,,,,,.......,,a,.,,,...,..,....,,,.....a,,,,,,.,,...,.,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3566	T	130	.$,$....,,,,,.,,.,,.,,..,.,g,.,,.,.,.,....,.,..,..,..,,,,,,....,.,,,,.,...,,,,,,.......,,,,.,,,...,A.,..A.,,,.....g,,,,,,.,,...,.,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3567	A	132	.$.$..,,,,,.,,.,,.,,..,.,,,.,,.,.,.,....,.,..,..t..,,,,,,....,.,,,,.,...,,,,,,.......,,,,.,,,...,..,....,,,....C,,,,,,,.,,...,.,.,^K.^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3568	T	130	.$.$,$,$,,,.,,.,,.,,..,.,,,.,,.,.g.,....,.,..,..,..,,,,,,....,.,,,,.,...,,,,,,.......,,,,.,,,...,..,....,,,.....g,,,,,,.,,...,.,.,...,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3569	T	133	,$,$,.,,.,,.,,..,.,,,.,,.,.,.,....,.,..,..,..,g,,,,...A,.,,,,.,...,,,,,,.......,,,,.,,,...,..,....,,,.....,,,,,,,.,,...,.,.,...,^K.^K.^K.^K.^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3570	A	133	,$.,,.,,.,,..,.,,,.,,.,.,.,....,.,..,..,..t,,,t,..C.,.,,,,.,...,,,,,,.......,,,,.,,,...,..,C...,,,.....,,,,,,,.,,...,.,.,...,....,,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3571	T	136	.$,,.,,.,,..,.,,,.,,.,.,.,....,.,..,..,..,,,,,,....g.,,,,.,...,,,,,,.......,,,,.,,,...,..,....,,,.....,,,,,,,.,,..A,.,.,...,....,,,,,^K.^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3572	G	135	,$,$.,,.,,..,.,,,.,,.,.,.,....,.,..,..,..,,,,,,....,.,,,,.,...c,,,,,.......,,,,.,,,...,..,....,,,.....,,,,,,,.,,...,.c.,...,....,,,,,..,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3573	G	137	.$,,.,,..,.,,,.,,.,.,.,....,.,..,..,..,,,,,c....,.,,,,.,...,,,,,,T......,,,,.,,,...,..,....,,,.....,,,,,,,.,,...,.,.,...,....,,,,,..,,^K.^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3574	A	136	,,C,,..,.,,,.,,.,.,.,....,.,..,..,..,,,,,,....,.,,,,.,...,,,,,,.......,,,,.,,,...,..,....,,,.....,,,,,,,C,,...,.,.,...,....,,,,,..,,..,,	2202222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3576	A	140	,$,$.,,..,.,,,.,,.,C,.,....,.,..,..,..,,,,,,....,.,,,,.,...,,,,,,.....C.,,,,.,,,...,..,....,,,.....,,,,,,,.,,...,.,.,...,....,,,,,..,,..,,.^K.^K.^K,	22022222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3586	T	139	.$.$..,.,..,..,..,,,,,,....,.,,,,.,.A.,,,,,,.......,,,,.,,,A..,..,....,,,.....,,,,,,,.,,...,.,.,...,....,,,,,..,,..,,...,,.,,,,.,..,...,..,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3588	T	139	.$.$,$.,A.,..,..,,,,,,....,.,,,,.,...,g,,,,.......,,g,.,,,...,..,....,,,.....,,,,,,,.,,...,.,.,...,....,,,,,..,,..,,...,,.,,,,.,A.,...,..,.,^Kg^Kg	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222200
+phiX174	3589	C	139	.,..,..,..,,,,,,....a.,,,,.,...,,,,,,.......,,,,.,,,...,..,....,,,.....,,,,,,,.,,...,.,.,...,....,,,,,..,,..,,...,,.,,,,.,..,...,..,.,,,^K.^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3590	C	141	.$,$G.,..,..,,,,,,....,.,,,,.,...,,,,,,G......,,,,.,,,...,..,....,,,.....,,,,,,,.,,...,.,.,...,....,,,,,..,,..,,...,a.,,,,.,..,...,..,.,,,...^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3602	G	150	.$.$T$,.,,,,.,...,,,,,,.......,,,,.,,,...,..,....,,,.....,,,,,,,.,,...,T,.,.T.,....,,c,,..,,..,,...,,.,,,,.,..,...,..,.,,,.....,,,,...,,.,.,.,.T..,..,,^K,^K,	22.222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3603	G	148	,$.,,,,.,...,,,,,,.......cc,,.,,,...,..,....,,,.....,,,,,c,.,,...,.,.,...,....,,,,,..,,..,,...,,T,,,,.,..,...,..,.,,,.....,,,,...,,.,.,.,....,..,,,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3604	T	149	.$,$,$,,.,...,,,,,,.......,,,,.,,,...,..,....,,,.....g,,g,,,.,,...,.,.,...,....,,,,,..,,..,,...,,.,,,,.,..,...,..,.,,,.....,,,,...,,.,.,.,....,..,,,,.^KA^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/2
+phiX174	3605	T	146	,$,$.,...,,,,,,..A....,,,,.,g,...,..,....,,,.....,,,,,,,.,,...,.,.,...,....,,,,,..,,..,,...,,.,,,,.,..,.A.,..,.,,,.....,,,,...,,.,.,.,....,..,,,,...	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3606	T	145	.,...,,,,,,.......,,,,.,,,...g..,....g,,.....,,,,,,,.,,...,.,.,...,....,,,,,..,,..,,...,,.,,,,.,..,...,..,.,,,.....,,,,...,,.,.,.,....,..,,,,...^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3607	C	147	.$,$...,,,,,,.......,,,,.,,,...,..,....a,,.....,,,,,,,.aa...,.,.,...,....,,,,,..,,..,,...,,.,,,,G,..,...,..,.,,,.....,,,,...,,.,.,.,....,..,,,,G...^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3608	C	145	.$..,,,,,,.....G.,,,,.,,,...,..,....,,,.....,,,,,,,.,,...,.,.,...,....,,,,a..,,..,,...,,.,,,,.,..,...,..,.,,,.....,,,,...,,.,.,.,....,..,,,,.....,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3609	G	146	.$.$,$,$,$,,,.......,,,,.,,,...,..,....,,,.....,,,,,,,.,,..T,.,.,...,....,,,,,..,,..,,...,,.,,c,.,..,...,..,.,c,T....,,,,...,,.,.,.,....,..,,,,.....,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3610	A	141	,$,$,.......,,,,.,,,...,..,....,,,.....,,,,,,,.,,...,.,.,...,....,,,,,..,,..,,...,,.,,,,.,..,...,CC,.,,,.....,,,,...,,.,C,C,..C.,..,,,,.....,..	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3611	G	145	,..T....,,,,.,,,...,..,....,,,.....,,,,,,,.,,...,.,.,...,....,,,,,..,,..c,...,,.,,,,.,..,...,..,.,,,.....,,,,...,,.,.,.,....,..,,,,.....,..^K.^K.^K,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3612	A	146	,$.......,,,,.,,,...,.C,....,,,.....,,,,,,,.,,...,.,.,...,....,,,,,..,,..,,...,,.,,,,.,..,...,..,.,,,.....,,,,C..,,.,.,.,..C.,..,,,,....C,....,,,,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3614	T	152	.$.$.....,,,,A,,,...,..,....,,,.....,,,,,,g.,,...,.,.,...,....,,,,,..,,..,,...,,.,,,,.,..,...,..,.,,,.....,,,,...,,.,.,.,....,..,,,,.....,....,,,,...,,,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3615	A	151	.$.$...,,,,.,,,...,..t....,,,.....,t,,,,,.,,...,.,.,...,....,,,,,..,,..,t...,,.,,,,.,..,...,..,.,,,.....,,,,...,,.,.,.,....,..,,t,.....,...C,,,,...,,,.,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3616	T	151	.$.$.,,,,.,,,...g..,....,,,.....,,,,,,,.,,...,.,.,...,....g,,,,..,,..,,...,,.,,,,.,..,...,..g.,,,.....,,,,...,,.,.,A,....,..,,,,.....,....,,,,...,,,.,.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3762	G	133	...,,,,.,,...,.....,....,,,...,.....,,,,.,c,.....,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3763	C	134	.$.$.$,,,,.,,...,...G.,....,,,...,..G..,,,,.,,,.....,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,.G..,....^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3764	T	132	,,,,.,g...,.....,....g,,...,.....,,,,.,,,.....,..,.,,..,,.,,....A,,,.,,,.,,.,...,.gA,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3765	A	134	,$,,,.,,...,.....,....,,,...,.....,,,,.,,,.....,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3766	C	138	,$,$,$.,,...,.....,....,,,...,.....,,,,.,,,.....,..,.,,..,,.,,.G...,,,.,,,.,,.a...,.,.,,,.,,,,,,.a.,a,,..,..,,,,..,..,..,,,....,....,,,,^K.^K.^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3767	T	135	.$,$,$.A.,.....,....,,,...,.....,g,,A,,,.....,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3768	G	133	.$.$.,.....,....,,,...,..T..,,,,.,,,T....,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,c,.,,,,c,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3769	C	136	.$,$.....,....,,,...,.....,,,,.,,,.....,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,a.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,.^K.^K,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3770	A	135	.....,....,,,...,...C.t,,,.,,,.....,..,.,,..,,.,,.....,,,.,,,.,,.,C..,.,.,t,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,.C,,,..,,t,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3771	A	136	.$.$...,....,,,...,.....,,,,.,,,.....,..,.,,..,,.t,.....,,,.,,,.,,.,...,.,.,,,.,,t,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3772	A	140	.$.$.$,$....,,,...,.....,,,,.,,,.....,..,.,,..,,.,,.C...,,,.,,,.,,.,...,.,.,,,.,,,t,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,.^K.^K.^K.^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3773	G	137	....,,,...,.....,,,,.,,,.....,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,c^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3774	G	140	....,,c...,.....,,,,.,,,.....,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,c,..,,,c,....,,,.^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3775	A	143	....,,,...,....C,,,,.,,,.....,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,.C,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3776	T	143	.$.$.$.$,$,$,$...,.....,,,,.,g,.....,..,.,,..,,.,,A....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,A.,,,,,....,,,.,,,.,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3777	A	139	.$..,.....,,,,.,,,.....,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..t..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3778	T	139	.$.$,$.....,,,,.,,,.....,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..g^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3779	T	138	.$.$...,g,,.,,,.....,..,.,,..,,.,,.....,g,.,,,.,,.,...,A,.,,g.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3780	T	139	.$.$.$,$,,,.,,,.....,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,g,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,..,^Kg^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220222202
+phiX174	3781	C	137	,$,$,$.,,,.....,..,.,,..,,.,,..G..,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,.G..,....,,,,..,,,..,,,,,....,,,G,,,.,,..,,..,,,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3782	T	136	.$,$,,...A.,..,.,,..,,.g,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,A.g,,..,,,,,....,,,.,g,.,,..,,..,,,..^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3783	A	137	,$,.....,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,..,,,...,^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3784	A	138	,$.....,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,t,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,..,,,...,.,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3785	T	141	.$.$.$..,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,g.A,,,..,,,,,....,,,.,,,.,,..,,..,,,...,.,,.,^K.^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3786	G	139	.$.,..,.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,cT...,....,,,,..,,,..,,,c,....,,,.,,,.,,..,,..,,,...,.,,.,..,,^Kc	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220
+phiX174	3787	T	139	.$,$..g.,,..g,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,..,,,...,.,,.,..,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3788	C	141	.$.$,$.,,..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,..,,a...,.,,.,..,,,,^I,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3789	G	140	.$,$,$..,,.,,.....,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,c.,,,.,,..,,..,,,...,.,,.,..,,,,,,c,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3790	T	138	.$.$,$,$.,,.....,,,.,,,.,g.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,g.,,,.,,..,,..,,,...,.,,.,..g,,,,,,,.,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3791	C	136	.$,$,..G..,,,.a,,.,,G,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,...G,,,.a,,.,,..,,..,,,...,.,,.,..,,,,,,,,.,.^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3793	C	136	.$.$.$..,,,.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,G.,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,..,,,...,.,,.,..,,,,,,,,.,....,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3795	G	132	,$,,T,,,.,,.,...,.,.,,,.c,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,c,,....,,,.,,,.,,..,,..,c,...,.,,.,..,,,,c,,,.,....,,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3796	A	132	,$,$.,,,.,,.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,.C,,,...,.,,.,..,,,,,,,,.,....,,.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3797	T	131	.$,$,$,.,,.,...,.,.,,,.,g,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,.A,g,,,....,,,.,,,.,,..,,..,,,...,.,g.,..,,,,,,,,.,....,,..^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3800	T	127	,$.,...,.,.,,,.,,,,,,.,.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,.A,,,,,....,,,.,,,.,,..,,..,,,...,.,,.,..,,,,,,,,.,....,,...^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3811	T	142	,$,,,.,.,,,,..,..,,,,..,A.,..,g,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,..,,,...,.,,.,..,,,,,,,,.,....,,...g,.,,....,,..,,.,,,...,,,,,,..^K.^K,^I,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/22222
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+phiX174	3813	G	140	.$,$.,,,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,..,,,...,.,,.,..,,,,,,,,.,....,,...,,.,,....,,..,,.,,,...,,,,,c...,,.^Kc	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220
+phiX174	3814	T	139	.$,,,..,..,,,,A.,.A,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,..,,,...,.,,.,..,,,,,,,,.,....,,...,,A,,....,,..,,.,,,...,,,,,,...,,.,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3815	T	139	,$,,..,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,..,,,.A.,.,,.,..,,,,,,,,.,....,,...,,.,,.A..,,..,,.g,,...,,,,,,...,,.,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	3818	T	142	.$.,..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,..,,,...,.,,.,..,g,,,,,,.,....,,...,,.,,....,,..,,.,,,...,,,,,,...,,.,,,,,^K.^K.^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3819	A	144	.$,$..,,,,..,..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,..,,,...,.,,.,..,,,,,,,,.,....,,...,,.,,....,,..,,.,,,...,,,t,,...,,.,,,,,....,^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3820	T	145	.$.$,$,,,..,..,..,,,....,....,,,,..,,,..,,,g,....,,,.,,,.,,..,,..,,,...,.,,.,..,,,,,,,,.,....,,A..,,.,,....,,..,g.,,,...,,,,,,...,,.,,,,,....,.,,^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3821	T	143	,$,$,$..,..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,..,,,...,.,,.,..,,,,,,,,.,....,,...,,.,,....,,..,,.,,,...,,,,,,...,,.,,,,,....,.,,..,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3822	T	142	.$.$,$..,..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,..,,,...,.,,.,..,,,,,,,,.,....,,...,,.,,....,,..,,.,,,...,,,,,,...,,.,,,,,....,.,,..,.^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	3823	T	141	.$.$,$..,,,....,....,,,,..,,,..,,,,,....,,,.,,,.,,..,,..,,,...,.,,.,..,,,,,,,,.,....,,...,,.,,....,,..,,.,,,...,,,,,,...,,.,gg,,....,.,,..,...^K.^KA	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222220
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+phiX174	4028	C	146	.$.$.$,$..,..,.,,.G.,,.,.,,,..,,.,,,,,,.,.,,...,.,,.,......,..,,..,,..,,......,,...,,..,,.,.,,,.,,,,.,..,,,....,,.,,,,...,....,.,..,,.,,.,...,,.,,^K,^K,^Ia^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/2
+phiX174	4029	T	144	.$A,..,.,,...,,.,.,,,..,,.,g,,,,.,.,,...,.,,.,......,..,,..,,..,,......,,...,,..,,.,.,,,.,,,,.,..,,,....,,.,,,,...,....,.,..,g.,,.,...,,.,,,,,,^K.^I,	202222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4077	T	153	.$,$..g,,....,,.,,,,...,....,.,..,,.,,.,...,,.,,,,,,.,,....,,.,,...,,,,.,.,..,,,.,,,,,..,.,.,..,,,,.A,,,.....,..,,..,.,,,,,,....,,....,,..,...,,.,,,,,.,^K.^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222022222222
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+phiX174	4084	T	157	.$,$,$.,,,,...,....,.,..,,.,,.,...,,.,,,,,,.,g....,,.,,...,,,,.,.,..,,g.,,,,,..,.,.,..,,,,..,,,.....,..,,..,.,,,,,,....,,....,,..,...,,.,,,,,.,....,,.,,...,,..^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4085	T	156	.$,$,$,$,$...,....,.,..,,.,,.,...,,.,,,,,,.,,....,,.,,...,,,,.,.,..,,g.,,,,,..,.,.,..,,,,..,,,.....,..,,..,A,,,,,,....,,....,,..,...,,.g,,,,.,....,,.,,...,,..,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4086	T	153	.$.$.$,$....,.,..,,.,,.g...,,.,,,,,,.,,....,g.,,...,,,,.,.,..,,,.,,,g,..,.,.,..,,,,..,,,.....,..,,..g.,,,,,,....g,.A..,,..,...,,.,,,,,.,....,,.,,...,,..,,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4087	C	150	.$.$.$.,.,..,,.,,.,...,,.,,,,,,.,,....,,.,,...,,,,.,.,..,,,.,,,,,..,.,.,..,,,,..,,,.....,..,,..,.,,,,,,....,,....,,..,..G,,.,,,,,.,....,,.,,...,,..,,,.,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4088	T	148	.$,$.,..,,.,,.,...,,.,,,,,,.,,....,,.,,...,,,,A,.,..,,,.,,,,,..,.,.,..,,,,..,,,.....,..,,..,.,,,,,,....,,.A..,,..,...,,.,,,,,.,....,,.,,A..,,..,,,.,.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4089	C	149	.,..,,.,,.,G..,,.,,,,a,.,,....,,.,,...,,,,.,.,..,,,.,,,,,..,.,.,..,,a,..,,,.....,..,,..,.,,,,,,....,,....,,..,...,,.,,,,,.,....,,.,,...,,..,,,.,.,^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4091	A	151	.$.$,$,$.,,.,...,,.,,,,,,.,,....,,C,,...,,,,.,.,..,,,.,,,,,..,.,.,..,,,,..,,,.....,..,,..,.,,,,,,....,,....t,..,...,,.,,,,,.,....,,.,,.C.,,..,,,.,.,..,.,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4092	T	148	.$,$,$.,...,,.,,,,,,.,,....,,.g,...,,,,.,.,..,,,.,,,,,..,.,A,A.,,,g..,,,.....,..,,..,.,,,,,,....,,....,,..,...,,.,,,,,.,....,,.,,...,,..,,,.,.,..,.,,,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4093	C	146	.$,$...,,.,,,,,,G,,....,,.,,...,,,,.,.,..,,,.,,,,,..,.,.,..,,,,..,,,.....,..,,..,.,,a,,,....,,...G,,..,...,,.,,,,,.,....,,.,,..G,,..,,,.,.,..,.,,,.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4094	C	144	.$.$.$,$,.a,,,,,.a,....,,.,a...,,a,.,.,..,,,.a,,,,..,.a.,..,,,,..,,,..G..,..,,..,.,,,,,,....,,....,,..,...,,.,,,,,.,....,,.,,.G.,,..,,,.,.,..,.,,,.,	222222022222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4095	C	141	,$.,,,,,,.,,....,,.,,...,,,,.,.,..,,,.,,,,,..,.,.,..,,,,..,,,.....,..,,..,.,,,,,,....,a....,,..,...,,.,,,,,.,....,,.,,...,,..,,,.,.,G.,.,,,.,^K.	220222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4099	T	135	,$....,,.,,...,,,,.,.,..,,,.,,,,,..,.,.,..,,,,..,,,....A,..,,..,.,,,,,,....,,....,,..,...,,.,,,,,.,....,,.g,...,,..,,,.,.,..,.,,,.,.,g.,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4100	G	136	.$.$.$.,,.,,...,,,,.,.,..,,,.,,,,,..,.,.,..,,,,..,,,.....,..,,..,.,,,,,,....,,....c,..,...,,.,,,,,.,....,c.,,...,,..,,,.,.,.T,.,,,.,T,c.,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4101	C	136	.$,$,$.,a...,,,,.,.,..,,,.,,,,,..,.,.,..,,,,..,,,.....,..,,..,.,,,,,,....,,....,,..,...,,.,,,,,.,....,,.,,...,,..,,,.,.,..,.,,,.,.,,.,,,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4102	T	135	.$,$,$..A,,,,.,.,..,,,.,,,,,..,.,A,..,,,,..,,,.....,..,,..,.,,,,,,....,,....,,..,...,,.,,,,,.,....,,.,,...,,..,,,.,.,..,.,,,.g.,,.,,,,,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4104	G	134	.$.$,$,$,$,$.,.,..,,,.,,,,,..,.,.,..,,,,..,,,.....,..,,..,.,,,,,,....,,....,,..,...,,.,,,,,.,....,,.,,...,,..,,,.,.,..,.,,,.,.,,.,,,,,,.,.^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4105	G	129	.,.,..,,,.,,,,,..,.,.,..,,,,..,,,.....,..,,..,.,,,,,,..T.,,....,,..,...,,.,,,,,.,..T.,,.,,..T,,..,,c.,.,..,.,,,.,.,,.,,,,,,.,...^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4107	T	128	.$,$..,,,.,,,,,..,.,.,..,,,,..,,,.....,..,,..g.,,,,,,.A..,,....,,..,..A,,.,,,,,.,....,,.,,...,,..,,,.,.,..,.,,,.,.,,.,,,,,,.,....,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4108	T	132	.$.,,,.,,,,,..,.,.,..,,,,..,,,.....,..,,..,.,,g,,,....,,....,,..,...,,.,,,,,.,....,,.,,...,g..,,,.,.,..,.,,,.,.,,.,,,,,,.,....,^K.^K,^K,^I,^K,^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4112	T	131	,$,$..,.,.,..,,,,..,,,.....,..,,..,.,g,,,,....,,....,,..,...,,.,,,,,.g....,,.,,...,,..,,,.,.,..,.,,,.,.,,.,,,,,,.,....,.,,,,,..,.,,.,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4113	A	131	.$.$,$.,.,..,,,,..,,,.....,..,,..,.,,,,,,....,,....,,..,...t,.,,,,,.,....,,.,,...,,..,,,.,.,..,.,,,.,.,,.,,,,,,.,....,.,,,,,..,.,,.,^K,^9,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4114	A	129	.$,$.,..,,,,..,,,.....,..,,..,.,,,,,,....,,....t,..,...,,.,,,,,.,....,,.,,...,,..,t,.,.,..,.,,,.,.,,.,,,,,,.,....,.,,,,,..,.,,.,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4120	T	123	.$.$...,..,,..,.,,,,,,....,,....,,..,...,,.,,g,,.,....,,.,,...,,..,,,.,.,..,.,,,.,.,,.,,,,,,.,....g.,,,,,..,.,,.,,,,..,..,,.^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4139	C	127	.$..,,.,,,,,.,....,,.,,...,,..,,,.,.,..,.,,,.,.,,.,,,,,,.,....,.,,,,,..,.,,.,,,,..,..,,.,...,,,,........,...,.,..,...,,..,....,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4140	T	127	.$.,,.,,,,,.,...A,,.,,...,,..,,,.,.,..,.,,,.,.,,.,,,,,,.,....,.,,,,,..,.,,.,,,,..,..,,.,...,,,,........,...,.,..,...,,..,....,.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4141	T	128	.$,$,$.,,,,,.,....,,.,,...,,..,,,.,.,..,.,,,.,.,,.,,,,,,.,....,.,,,,,..,.,,.,,,,..,..,,.,...,,,,........,...,.,..,...,,..,....,.,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4143	G	125	,$,$,$,,T,...T,,.,,...,,..,,,.,.,..,.,,,.,.,,.,,,,,,.,....,.,,,,,..,.,,.,,,,..,..,,.,...,,,,........,...,.,..,...,,..,T...,.,..^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4148	G	126	.$,$,$...,,..,,,.,.,..,.,,,.,.,,.,,,,,,.,....,.,,,,c..,.,,.,,,,..,..c,.,...c,,,........,...,.,..,...,,..,....,.,....,.,...,,..,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4149	A	126	.$..,,..,,,.,.,..,.,,,.,.,,.,,,,,,.,....,.,,,,,..,.,,.,,t,..,..,,.,...,,,,....C...,...,.,..,...,,..,....,.,....,.,...,,..,,,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4216	C	142	.$.$,$,,,,,..,.,.,,,,,,.,,....,,,.,,,,,,,.Ga.,......,.,,...,,..,,,.,,..,,.,,..,,,.,.....,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,^K.^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4217	T	140	,$,$,,,..,.,.,,,,,,.,,....,,,.,,,,,,,..,.,......,.,,...,,..,,,.,,..,,.,,..,,,.,.....,,,g..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4218	G	139	,$,$,$..,.,.,,,,,,.,,....,,,.,,,,,,,..,.c......,.,,...,,..,,,.,,..,,.,,..,,,.,.....,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,c.,,,.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4219	C	138	..,.,.,a,,,,.,,....,,,.,,,,,,,..,.,......,G,,...,,..,,,.,,..,,.,,G.,,,.,.....,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,.G,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222202
+phiX174	4220	T	140	.$.,.,.,,,,,,.,,.A..,,,.,,,,,,,..,.,.A....,.,,...,,..,,,.,,..,,.,,..,,,.,.....,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,.^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4221	T	139	.$,$.,.,,,,,,.,,....,,,.,,,,,,,..,.,......,.,,...,,..,,,.,,..,,.,,..,,,A,.....,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,g,.,,..,,,,.,,.,,,..,...	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4222	C	138	.$,.,,,,,,.,,....,,,.,,,,,,,..,.,......,.,,...,,..,,,.,,..,,.,,..,,,.,...G.,,,,..,a..,..,,,..,,,.a.,.,,.,.G,,,.,.,,,.,,..,,,,.,,.,,,..,...^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4223	T	139	,$.,,,,,,.,,....,,,.,,,,,,,..,.,......,.,,...,,..,,,.,,..g,.g,..,,,.,.A...,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4224	G	140	.,,,,,,.,,....,,,.,,,,,,,..,.,......,.,,...,,..,,,.,,..,,.,,..,,,.,.....,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4225	A	143	.$,,,,,,.,,....,,,.,,,,,,,..,.,......,.,,...,,..,,,.,,..,,.,,..,,,.,.....,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,..^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4226	C	143	,$,$,,,,.,,....,,,G,,,,,,,..,.,......,.,,...,,..,,,.,,..,,.,,..,,,.,.....a,,,..,,..,..,,,..,,,.,.,.,,.,..a,,.,.,,,.a,..,,,,.,,.,,,..,...,,,....,^I,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4227	G	144	,$,$,,.,,...T,,,.,,,,,,,..,.,......,.,,...,,..,,,.,,..,,.,,..,,,.,.....,,,,..,,T.,..,,,..,,,.,.,.,,.,T.,,,.,.,,,.,,..,c,,.,,.,,,..,...,,,....,,^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4228	T	144	,$,$.,,....,,,.,,,,,,,..,.,......,.,,...,,..,,,.,,..,,.,,..,,,.,.....,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4230	C	145	.$,$,$....,,,.,,,,a,,..,.,......,.,,...,,..,,,.,,..,,.,,..,,,.,.....,,,,..,,..a..,,,..,,a.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...a,,....,,.,,....^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4233	G	150	.$.$.$,$,,.,,,,,,,T.,.,.....T,.,,...,,..,,,.,,..,,.c,..,,,.,.....,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4238	G	144	,$,$..,,......,.,,...,,.T,,,.,,..,,.,,..,,,.,.....,,,,..c,..,..,,,T.,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.c,....,,,....,,,,,,.,.^K.	222220222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4239	T	145	.$.$,$......,.,g...,,..,,,.,,..,,.,,..,,,.,.....,,,,..,,..,..,,,A.,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,.A,...,,,....,,.,,....,,,....,,,,,,.,..^K,^I,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/2
+phiX174	4240	T	145	......,.,,...,,..,,,.,,..,,.,,..,g,.,.....,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,A,,..,,,,.,,.,,,..,...,g,....,,.,,....,,,....,,,,,,.,..,,g,^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/2222
+phiX174	4241	T	148	......,.,,...,,..,,,.,,..,,.,,..,,,.,.....,,,,..,,..g..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,..A.,,,,,,.,..,,,,..,^K.^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4242	G	148	.$.$.$.$..,.,,...,,..,,,.,,..,,.,,..,,,.,.....,,c,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,...	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4243	T	149	.$.$,$.,,...,,.A,,,.,,..,,.,,..,,,.g.....,,,,A.,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,.A..,,,....,,,,,,.,..,,,,..,...^K.^K.^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4244	A	147	.$,$,...,,..,,,.,,..,,.,,..,,,.,.....,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,C..,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4245	T	147	,$...,,..,,,.,,..,,.,,..,,,.,.....,,,,..,,..,..,,,..,,,.,.,.,,.,..,,g.,.,,,.,,..,,,,.,,.g,,..,...,,,....,,.,,....,,,....,,,,,,.g..,g,,..,.....,,,.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4246	C	149	.$.$.$,$,$..,,,.,,..,,.,,..,,,.,.....,,,,..a,..,..,,a..,,,.,.,.,,.,..,,,.a.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,G...,,,,,,.,..,,,,..,.....,,,..,^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4247	T	147	.$.$,$,$,$A,,..,g.,g..,,,.,.....,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,..,.,,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4249	T	142	,$,$.,,.,,..,,,.,.....,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,..,.,,,,g,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4253	T	147	.$.,,,.,.....g,,,..,,..,..,,,..,g,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,A.,.....,,,..,.,,,,,,,.....,,...^K.^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4255	A	144	.$,$...C.,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..t,,,.,,.,,,..,...,,,C...,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4256	G	142	.$.$.$.T,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4257	A	141	..,,,,..,,..,..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.C...,,,..,.,,,,,,,.....,,......,.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4259	G	136	.$.$,$,$..,..,,,..,c,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,..,.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4260	T	135	.$.$,$..,,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,A,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,..,.,,,,,,g.....,,......,..,.^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4261	T	135	..,,,..,,,.,.,.,,.,..,,g.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,....A.,..,..,,^K.^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4262	A	135	.$.,,,..,,,.,.,.,,.,..,,,.,.,,,.,t..,,,,.,,.,,,.C,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,..,..,,...	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4263	A	135	.$,$,,..,,,.,.,.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,t.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,..,..,,...^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4265	G	137	.$.$,$,$,$.,.,.,,.,..,,,.,.,,,.,,..,,c,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,...T.,,,..,.,,,,,,c.....,,.....T,..,..,,...,..T^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4266	G	133	.$,$.,.,,.,..,,,.,.,,,.,c..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,..,..,,...,..T..,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4267	A	132	.$,$.,,.,..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,t,,..,...C.,,,..,.,,,,,,,.....,,......,..,..,,...,.....,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4268	T	133	.$,$,$.,..,,,.,.,,,.,,..,,,,.,g.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,A.,.,,,,,,,.....,,......,..,..,,...,.....,,,^K.^K.^9,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4269	G	134	.$,$..,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,..,..,,...,.....,,,T.,^K.^K.^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4270	A	133	.$.$,,,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....t,,,,t.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,..,..,,...,.....,,,..,....^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4271	A	134	,$,$,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,t....,,,....,,,,,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,..,..,,...,.....,,,..,.....^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4272	T	132	,.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,..,.,,g,,,,.....,,......,..,..,,...,.....,,,..,.......,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4273	T	134	,$.,.,,,.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,,g,,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,..,..,,...,.....,,,..,.......,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4275	G	133	.$,$,$.,,..,,,,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,..c.,,,,,,,.....,,.T....,..,..,,...,.....,,,..,.......,,,.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4276	C	133	.,,..,,,,.,,.a,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,.G,.,,,,,,,.G...,,......,..,..,,...,.....,,,..,.......,,,.,,^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4277	A	134	.$,$,$.C,,,,.,,.,,,..,...,,,....,,.,,C...,,,....,,,t,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,..,..,,...,.....,,,..,.......,,,.,,.,,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4278	C	135	.$.$,,,,.,,.,a,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....a,,..,.,,,,,,,.....a,......,..,..,,...,.....,,,..,.......,,,.,,.,,.^K.^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4279	A	135	,$,,,.,,.,,,..,...,,,....,,.,,C...,,,....,,,,,,.,..,,,,..,.....,,,..,.,t,,,,,.....,,......,..,..,,...,.....,,,..,.......,,,.,,.,,..,,,^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4281	T	140	,$,.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,g..,.,,,g,g,.....,,.A....,..,..,,...,.....,,,..,.......,,,.,,.,,..,,,.....,,,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4282	G	143	,$.,,.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,..,..,,...,.....,,,..,.......,,,.,,.,,..,,,.....,,,.^I.^KT^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222/22
+phiX174	4283	C	144	.$,$,$.,,,..,...,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.G...,,,..,.,,,,,,,.....,,......,..,..,,...,.....,,,..,.......,,,.,,.,,..,,,.....,,,...,,^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4284	T	145	.,,,..,...,,,..A.,,.,,....,,,....,,g,,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,..,..,,...,.....,,,..,.....A.,,,.,,.,,.Ag,,.....,,,...,,.,^I.^K.^I.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4286	C	147	.$.,.G.,,,....,,.,,....,,,....,,,,,,.,..,,,,..,.G...,,,..,.,,,,,,,.....,,.G....,..,..,,...,.....,,,..,.......,,,.,,.,,..,,,.....,,,...,,.,...a.,,^K.^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4288	A	153	.$..,,,....,,.,,....,,,....,,,,,,.t..,,,,..,.....,,,..,.,,,,,t,.....,,......,C.,..,,...,.....,,,..,.......,,,.,,.,,..,,,.....,,,...,,.,C..,.,,.....,,^K.^K.^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4289	T	156	.$.$,,g....,,.,,....,,,....,,,,,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,A.,..,,...,.....g,,..,.......,,,.,,.,,..,,,.....,,,...,,A,...,.,,..A..,,..,,,^K.^K.^K.^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4291	T	158	,$,,....,,.,,....,,,A...,,,,,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,..,..,,...,.....,,,..,.......,,,.,,.,,..,,,.....,g,...,,A,...,.,,.....,,..,,,...,.,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4293	C	159	.$.$..,,.,,..G.,,,..G.,,,,,,.,..,,,,..,.....,,,..,.,,a,,,,.....,,......,..,..,,...,.....,,,..,.....G.,,,.,,.,,..,,,.....,,,...,,.,...,.,,.....,,G.,,,...,.,.,..,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4294	T	158	.$.$,$,.,,....,,,....,,,,,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,..,..,,.A.,.....,,,..,.......,,,.,,.,,..,,,.....,,,...,,.,...,.,,.....,,..,,,...,.,.,..,.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4297	C	156	.$.$..,,,....,,,,,,.,..,,,,..,.....,,,..,.,,,,,,,.....,,......,..,..,,...,.G...,,,..a.......,,,.,,.,,..,,,..G..,,,...,,.,...,.,,.....,,..,,,...,.,.,..a..,,^K.^K,^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4331	C	169	,$.....,,,..,.......,,,.,,.,,G.,,,.....,,,...,,.,G..,.,,.....,,..,,,.G.,.,.,..,..,,.,a....,..,,.,...,G,,,.,,,..,,.,,....,,.,..,,,..,,..,.,,,....,...,,.,,,.......,,..,,^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4456	G	121	.$.$,$..,,...,,..,....,..,...,..,,..,,..,.,,,...,...,,.,...,...,,,..,,....T,.,,,,.,,.....,......,....,,,,,,..,,.,,...,,,.,^I.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4457	T	120	.$.$,$,$...,,..,....,..,...,..,,..,,..,.,,,...,...,,.,...,A..,,,..,,.....,.,,,,.,,.....,......,....,,,,,,..,,.,,...,,,.,.,^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4458	A	119	.$..,,..,....,..,...,..,,..,,..,.,,,...,...,,.,...,...,,,..,,.....,.,,,,.,,.....,......,....,,,,,,..,,.,,...,,,.,.,..^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4459	T	119	..,,..,....,..,...,..,,..,g..,A,,,...,...,,A,...,...,,,..,,.....,.,,,,.,,.....,......,....,,,g,,..,,.,,...,,,.,.,....,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4460	T	120	.$.,,..,..A.,..,...,..,,..,,..,.,,,...,...,,.,...,...g,,..,,.....,.,,,,.,,.....,......,....,,,,,,..,,.,,...,,,.,.,....,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4461	A	122	.$,$,..,....,..,...,..,,..,,..,.,,,...,...,,.,...,...,,,..,,.....,.,,,,.,,.....,......,...C,,,,,,..,,.,,...,,,.,.,....,,,^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4463	G	121	.$.$,$.T..,..,...,..,,..,,..,.,,,...,...,,.,...,...,,,..,,.....,.,,,,.,,..T..,......,....,,,,,,..,,.,,...,,,.,.,....,,,.,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4464	G	121	.$...,..,...,..,,..,,..,.,,,...,...,,.,...,...,,,..,,.....,.,,,,.c,.....,......,....,,,,,,..,,.,,T..,c,.,.,....,,c.,,.,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4465	A	120	.$.$.,..,...,C.,,..,,..,.,,,...,...,,.,...,...,,,..,,.....,.,,,,.,,.....,......,....,,,,,,..,,.,,...,,,.,.t....,,,.,,.,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4466	T	120	.$,..,...,..,,A.,,..,.,,,...,...,,.,...,...,,,..,,.....,.,,,,.,,.....,......,....,,,,,,..,,.,,...,,,.,A,....,,,.,,.,,,g^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4467	G	119	,$..,...,..,,..,,..,.,,,...,...,,.,...c...,,,..,,.....,.,,c,.,,.....,..T...,....,,c,,,..,,.,,...,,,.,.,....,,,.,,.,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4468	A	119	.$.$,...,..,,..,,..,.,,,...,...,,.,...,...,,,..,,.....,.,,,,.,,.....,......,....,,,,,,..,,.t,...,,,.,.,....,,,.,,.,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4469	G	117	,$...,..c,..,,..,.,,,...,...,,.,...,...,,,..,,.....,.,,,,.,,.....,......,....,,,,,,..,,.,,...,,,.,.,....,,,.,,.,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4470	T	122	.$.$.$,$..,,..,g..,.,,g...,...,,.,...,...,,,..,,.....,.,,,,.,,.....,......,....,,,,,,..,,.,,...,,,.,.,....,,,.,,.,,,,,,,^K.^K.^K.^K.^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4471	G	121	.$.,,..,,..,.,,,...,...,,.,...,...,,,..,,.....,.,,,,.,,.....,..T...,....,,,,,,..,,.,,...,,,.,T,....,,,.,,.,,,,,,,....,,^K.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4472	T	121	.$,$,$..,,..,.,,,...,...,,.,...,...,,,..,,.....,.,,,,.,,.....,...A..,....,,,,,,..,,.,,...,,,.,A,....,,,.g,.,,,,,,,.A..,,.,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4473	T	120	.$.$,$,..,.,,,...,...,,.,...,...,,,..,,...A.,.,,,,.,,.....,......,....,,,,,,..,,.,,...,,,.,.,....,,,.,,.,,,,,,,....,,.,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4474	C	120	,$..,.,,,...,...,,.,...,...,,,..,,.G...,.,,,,.,,.....,......,....,,,a,,..,,.,,..G,,,.,.,.G..,,,.,,.,,,,,,,....,,.,,,,,^K.^K.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4477	G	119	,$,$...,...,,.,...,...,,c..,,.....,.,,,,.,,.....,......,....,,,,,,..,,.,,...,,,.,.,....,,,.,,.,,,,,,,....,,.,,,,,..,,,.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4478	A	119	.$.$.$,$...,,.,..Ct...,,,..,,.....,.,,,,.,,.....,......,....,t,,,,..,,.,,...,,,.,.,....,,,.,,.,,,t,,,....,,.,,,,,..,,,..,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4479	T	116	.$..,,.,...,...,,,..,,.....,.g,,,.,,....A,......,....,,,,,,..,,.,,...,,g.,.,....,,,.,,.,,,,,,,....,,.,,,,,..,,g..,..^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4480	T	115	..,,.,...,...,,,..,,.....,.,,,,.,,.....,......,....,,,,,,..,,.,,...,,,.,.,....,,,.,,.,,,,,,,....,,.,,,,,..,,,..,.A,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4487	G	117	.$.$.$,$,$c$..,,....T,.,,,,.,,.....,......,....,,,,,,..,,.,,...,,,.,.,....,,,.,,.,,,,c,,....,,.,,,,,..,,,..,..,,,,,...,^K.^K.^K.^K,	22222.222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4488	G	113	.$.$,$,$.....,.,,,,.,,.....,......,....,,,,,,..,,.,,...,,,.,.,....,,,.,,.c,,,,,,....,,.,,,,,..,,,..,..,,,,,...,...,^K.^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4489	C	113	.$.$...,.,,,,.,,..G..,......,....,,,,,,..,,.,,...,,,.,.,....,,,.,,.,,,,,,,....,,.,,,,,..,,,..,..aa,,,...,...,..^K.^K.^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4496	T	122	,$,$.....,......,....,,,,,,..,,.,,...,,,.,.,....,,,.,,.,,,,,,,....,,.,,,,,..,,,..,..,,,,,...,...,.....,.,,,,,...,,,,..,,^K.^K.^I.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4510	G	143	.$,$....,,,,,,..,,.,,...,,,.,.,....,,,.,,.,,,,,,,....,,.,c,,,..,,,..,..,,,,,...,...,.....,.,,,,,...,,,,..,,...,.,,,.,,..,..,,,,,..,,..,,...,.T..^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4511	A	142	.$.$.$.$,$,$,,,,..,,.,,...,,,.,.,....,,,.,,.,,,,,,,....,,.,,,,,..,,,..,..,,,,,...,...,.....,.,,,,,...,,,,..,,...,.,,,.,,..,..,,,,,.C,,..,,...,....,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4513	G	136	,$,$..,c.,,...,,,.,.,....,,,.,,.,,,,,,,....,,.,,,,,..,,,..,..,,,,,...,...,.....,.,,,,,...,,,,..,,...,.,,,.,,..,..,,,,,..,c..,,...,....,,.,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4514	C	136	.$.$,$,$.,,.G.,,,.,.,....,,,.,,.,,,,,a,....,,.,,,,,..,,,G.,..,,,,,...,...,.....,.,,,,,...,,,,..,,...,.,,,.,,..,..,,,,,..,,..,,...,.G..,,.,^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4516	T	134	.,,...,,,.,.,....,,,.,,.,,,,,,,....,,.,,,,,..,,,..,..,,,,,...,...,.....,.,,,,,...,,,,..,,...,.,,,.,,..,..,,,,,..,,..,,...,....,,.g..,^K.	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4517	T	136	.$,,...,,,.,.,....,,,.,,.,,,,,,,....,,.,,,,,.A,,,..,..,,,,,...,...,....Ag.,,,,,...,,,,..,,...,.,,,.,,.A,A.,,,,,..,,..,,...,....,,.,..,.^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4518	A	138	,$,$...,,,.,.,....,,,.,,.t,,,,,,....,,.,,,,,..,,,..,..,,,,,..C,...,.....,.,,,,,...,,,,..t,...,.,,,.,,..,..,,,t,..,,..,,...,....,,.,..,...^K.^K.^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4519	C	139	.$.$.$,$,,.,.,....,,,.,,.,,,,,,,....,,.,,,,,..,,,..,..,,,,,...,...,.....,.,,,,,..G,,,,..,,...,.,,,.,,..,..,,,,,..,,..,,.G.,.G..,,.,..,......^I.^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4522	T	139	,$,$.,.,..A.,,,A,,.,,,,,,,....,,.,,,,,..,,,..,..,,,,,.A.g...,.....,.,,,,,...,,,,..,,...,.,,,.,,..,..,,,,,..,,..,,...,....,,.,..,.......,,,,^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4523	T	141	.,.,....,,,.,,.,,,,,,,....,,.,,,,,..,,,.A,..,,,,,...,...,.....,.,,,,,...,,,,..,g...,.,,,.,,..,..,,,,,..,,..,,...,...A,,.,..,.......,,,,.,^K.^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4524	C	142	.$,$.,....,,,.,,.,,,,,,,....,,.,,,,,..,,,..,..,,,,,.G.,...,.....,.,,,,,...,,,,..,,...,.,,,.,,..,..,,,,,..,,..,,...,....,,.,..,.......,,,,.,.,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4598	T	150	..,..,,...,.,.,,,,A...,..,,,......,...,,..,,,...,.,,,,..,,,.,,..,,,...g.,.,....,,,.,.....,.,......,,,.g.,,....,.,.....,,.,.....,....,,.g,,,.,,.......,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4599	G	154	.$.$,$..,,...,.,T,,,,....,..,,,......,...,,..,,,...,.,,,,..,,,.,,..,,,...,.,.,....,,,.,.....,.,......,,,.,.,,....,.,.....,,.,.....,....,,.,,,,.,,.......,^K.^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4601	C	151	.$.$.$,$.,.,,,,....,..a,,......,..G,,..,,,...,.,,,,..,,,.,,..,,,...,.,.,....,,,.,.....,.,......,,,.,.,,....,.,.....,,.,.....a....,a.,,,,.,,.......,...,.^K.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4651	T	147	.$,$,$....,.,.....,,.,.A...,....,,.,,,,.,,.......,...,....,.,,.,,g..,,,,,,..,,,..,.,......g,...,,.,,..,,,...,g...,,,,.,..,.,,.,...,g.,.,,..,,...,^K.^K.^K.^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4715	C	166	.$.,,...,...,,..,,....,.,....,,..G.,,,,,......,.,,.,,,,,,,,,,...,,.....,,,.,..,..,,G..,,....,.,,.,,,....,,..,.,.,..,,,,,...,,,.,,,,....,.a,..G...,,,,,,,,...,,.,,,,^K.^K.^K.^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4716	T	165	.$,$,$...,...,,..,,....,.,....,,....,,,,,......,.,,.,,,,,,,,,,...,,.....,,,.,..,..,,...,,....,.,,.,,,....g,..,.,.,..,,,,,A..,,,.,,,g....,.,,......,,,,,,,,...,,.g,,,....	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4719	T	162	...,,..,,....,.,....,,....,g,,,......,.g,.,,,,,,g,,,...,,.....,,,.,..g..,,...,,A...,.,,.,,,....,,..,.,.,..,,,g,...,,,.,,,,....,.,,......,,,,,,,,...,,.,,,,.....,,^K,	222022222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4721	T	166	.$.$,$,$....,.,....,,A...,,,,,......,.,,.,,,,,,,,,,...,,...A.,,,.,..,..,,...,,....,.,,.,,,....,,..,.,.,..,,,,,...,,,A,,,,....,.,,......,,,,,,,,...,,.,,,,.....,,,...,,^K.^K,^K,^I,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4722	C	162	.$.$.$.$a.,....,,....,,,,,......,.,,.,,,,,,,,,,...,,.....,,,G,..,G.,,...,,....,G,,.,,,....,,..,.,.,..,,,,,...,,,.,,,,....,.,,......,,,,,,,,...,,.,,,a.....,,,...,,.,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4724	G	160	.$,$....,,....,,,,,......,.,,T,,,,,,,,,,...,,.....,,,.,..,..,,T..,,....,.,,.,,,....,,..,.,.,..,,,,,...,,,.,,,,....,.,,......,,,,,,,,...,,.,,,,.....,,,...,,.,,,.,^K.	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4725	T	160	.$.$.$.$,,....,,,,,......,.,,.,,,,,,,,,,...,,.....,,,.,..,..,,...,,....,.,,.,,,....,,..,.,.,..,,,,,...,,,.,,,,....,.,,.....A,,,,,,,,...,,.,,,,.....,,,...,,.,,,.,.^K.^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4727	T	159	.$.$.$.,,g,,......,A,,.,,,,,,,,,,...,,.....,,,.,..,..,,...,,....,.,,.,,,....,,..,.,.,..,,,,,...,,,.,,,,....,.,,......,,,,,,,,...,,.,,,g.....,,,...,,.,,,.,A.g.,^K.^K,^K,	222222022222212222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4898	C	123	,$.,.,.,.,,a..,,,.,,.,,.,,.,,,.,...,...,,.,,,,,,,,.,,,,.,,....,.,,.,.....,,,,,,.,,,....,.,...,,.,.,,,.,,..,.,..,.,,.,,,,.,.,	022222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4899	A	123	.$,$.,.,.,,,..,,,.,,.,,.,,.,,,.,...,...,,.,,,,,,,,.,,,,.,,....,.,,.,.....,,,,,,.,,,....,.,...,,.,.,t,.,,..,.,..,.,,.,,,,.,.,^K.	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4900	T	122	.$,$.,.,,,..,,,.,,.,,.,,.,,,.,...,...,,.,,,,,,,,.,,,,.,,....,.,,.,.....,,,,,,.,,,....,.,...,,.,.,,,.,,..,.,..,.,,.,,,,.,.,.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4901	C	121	.$,$.,,,..,,,.,,.,,.,,.,,,.,...,...,,.,,,,,,,,.,,,,.,,....,.,,.,.....,,,,,,.,,,....,.,...,,.,.,,,.,,..,.,..,.,,.,,,,.,.,.,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4905	G	117	.,,,.,,.,,.,,.,,,.,...,...,,.,,,,,,c,.,c,,.,,....,.,,.,.....,,,,,,.c,,....,.,.T.,,.,.,,,.,,..,.,..,.,,.,,,,.,.,.,,.,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4906	T	119	.$,$,,A,,.,,.,,.,,,.g...,...,,.,,,,,,,,.,,g,.,,....,.,,.,.....,,,,,,A,,,....,.,...,,.,.,,,.,g..,.,..,.,,.,,,g.,.,.,,.,,^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4907	T	118	,$,.,,.,,.,,.,,,.,.A.,...,,.,,,,,,,,.,,,,.,,....,.,,.g.....,,,,,,.,,,....,.,...,,.,.,,,.,,..,.g..,A,,.,,,,.,.,.,,.,,.,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4908	C	119	,$.,,.,,.,,.,,,.,...,...,,.,,,,,,,,.,,,,.,,....,.,,.,.....a,,,,,.,,,....,.,...,,.,.,,,.,,..,.,..,.,,.,,,,G,.,.,,.,,.,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4909	G	118	.$,$,.,,.,,.,,,.,...,...c,.,,,,,,,,.,,,,.,,T...,.,,.,.....,,,,,,.,,,....,.,...,,.,.,,,.,,..,.,..,.,,.,,,,.,.,.,,.,,.,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4913	C	115	.$,$,,.,...,...,,.,,,,,,,,.a,,,.,,....,.,,.,.....,,,,,,.,,,....,.,G..,,.,.,,,.,,..,.,..,.,,.,,,,.,.,.,,.,,.,,,,...,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4915	C	115	.$,$...,...,,.,,,,,,,,.,,,,.,,....,.,,.,.....,,,,,,.,,,....,.,...,,G,.,,,.,,..,.,..,.,,.,,,,.,.,.,,.,,.,,,,...,,,^K,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4916	G	113	.$..,...,,.,,,,,,,,.,,,,.,,....,.,,.,.....,,,,,,.c,,....,.,...,,.,.,,,.,,..,.,..,.,,.,,,,.,.,.,,.,,.,,,,...,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4917	C	114	.$.,...,,.,,,,,,,,.,,,,.,,....,.,,.,.....,,,,,,.,,,....,.,...,,.,.,,,.,,..,.,..,.,,.,,,,.,.,.,,.,,.,,,,...,,,,,,,^K.^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4923	G	108	,$,,.,,,,.,,....,.,,.,.....,,,,,,.,,,....,.,...,,.,.,,,.,,..,.,..,.,,.,,,,.,.,.c,.,,.,,,,...,,,c,,,.,.,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4927	T	106	,$,$.,..A.,.,,A,.....,,,,,,.,,,.A..,.,...,,.,.,,,.,,..,.,..,.,,.,,,,.,.,.,,.,,.g,,,...,,,,,,g.,.,,,,,,,.,,,^I,	2222220222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4930	C	101	.$,$,$.,.....,,,,,,.,,,....a.,...,,.,.,,,.,,..,.,..,.,,.,,,,.,.,.,,G,,.,,,,...,,,,,,,.,.,,,,,,,.,,,,..^K.^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4963	A	83	,$,$,.,.,.,,.,,.,,,,...,,t,,,,.,.,,,,,,,.,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4966	G	79	.$,$.,,.,,.,,,,...,,,,,,,.c.,,,,,,,.,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,c,,,,,,,,,,,.	2222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4968	G	78	.$,,.,,.,,,,...,,,,,,,.,.,,,,,,,T,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4971	C	78	.$,,.,,,,...,,,,,,,.,.,,,,,,,.,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4972	C	77	,$,.,,,,...,,,,,,,.,.,,,,,,,.,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4975	T	81	.$,$,,,...,,,,,,,.,.,,,,,,,.,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4977	A	79	,$,$...,,,,,,,.,.,,,,,,,C,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,t.,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	4979	A	83	.$.$.,,,,,,,.,.,,,,,,,.,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,t,,,,,,,,,,,.,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4980	G	84	.$,,,,,,,.,.,,,,,,,.,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4981	C	86	,$,$,,,,,.,.,,,,,,,.,,,,...,,,.,,,.,,,,,,,,,a,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4982	T	85	,$,,,,.,.,,,,,,,.,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,g,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4983	A	84	,,,,.,.,,,,,,,.,,,,...,,,.,,,.,,,,,,,,,,,t,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4984	C	86	,$,$,$,$.,.,,,,,,,.,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4985	C	83	.,.,,,,,,,.,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4986	A	86	.$,$.,,,,,,,.,,,,...,,,.,,,.,,,,,,t,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,t,,,,,,,,,,,^K,^Kt^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222202
+phiX174	4987	G	84	.$,,,,,,,.,,,,...,,,.,,,.,,,,,,,,,,,,,,,c,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4988	T	85	,$,$,,,,,.,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4989	T	84	,$,$,,,.,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,g,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4990	A	83	,$,,.,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4991	T	83	,$,.,,,g...,,,.,,,.,,,g,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4992	A	83	,$.,,,,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,t,t,,,t,,,,,,,,,,,,,,,t,,,,,,t,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4993	T	82	.$,$,,,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,g,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4994	G	81	,$,$,...,,,.,,,.,,,,,,,,,,,,,,c,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4995	G	80	,...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4996	C	80	,$...,,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4997	T	79	.$..,,,.,,,.,,,,,,,,,,,,g,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,g,,,,,g,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4998	G	79	.$.,,,.,,,.,,,,,,,,c,,,,,,,,,,,,,,,,,,,,.,c,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,c,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	4999	T	79	.$,$,,.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5000	T	79	,,.,,,.,,,,,,,,,,,,,,,g,,,,,,,g,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5001	G	80	,$,$.,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,c,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5002	G	79	.$,$,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5003	T	78	,$,$.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5004	T	77	.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5005	T	78	.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5006	C	80	.$,,,,,,,,,,,,a,,,,,,,,,,,,,,,,.,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5007	T	80	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5008	A	80	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5009	T	81	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,g,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5010	G	81	,$,,,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,c,,,,^K,^Kc	222222222222222222222222222222222222222222222222222222222222222222222222222222220
+phiX174	5011	T	81	,$,$,,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5012	G	79	,,,,,,,,,,,c,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5013	G	81	,$,,,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5014	C	83	,$,$,,,,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^I,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5015	T	84	,$,,,,,g,g,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^I,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5016	A	83	,$,,,,t,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5017	A	82	,,,t,,,,,,,,,,,,,,,.t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,tt,,,,,,,,,,,,,t,,t,,t,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5018	A	82	,$,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5019	T	82	,,,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5020	A	83	,$,$,,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5021	C	82	,$,,,,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5022	G	82	,$,$,$,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5023	T	79	,,,,g,,,,,,,.,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,g,g,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5024	T	81	,,,,,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5025	A	81	,$,$,$,$,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5026	A	77	,,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5027	C	79	,$,,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,a,,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5028	A	79	,,,,,,,.,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5029	A	79	,$,,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5030	A	79	,$,,,,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5031	A	78	,$,$,$,,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5032	A	75	,$,$.,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5033	G	75	.,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5034	T	77	.$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5035	C	76	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5036	A	78	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5037	G	78	,$,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5038	A	80	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5039	T	79	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5040	A	78	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5041	T	79	,,,,,,,,,,,,,,,,,,,gg,,,,,,,,,,g,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5042	G	80	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5043	G	80	,$,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5044	A	78	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5045	C	79	,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5046	C	79	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5047	T	79	,$,$,$g$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222.222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5048	T	74	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5049	G	73	,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5050	C	72	,$,$,$,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5051	T	74	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,^K,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5052	G	75	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5053	C	76	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5054	T	75	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	202222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5055	A	75	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,t,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5056	A	75	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5057	A	76	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5058	G	79	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,^K,^K,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5059	G	79	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5060	T	78	,$,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5061	C	78	,$a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5062	T	79	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5063	A	81	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5064	G	82	,$,,,,,,,,c,,,,,,,,,,,,,cc,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5065	G	82	,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5066	A	83	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5067	G	83	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5068	C	82	,$,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,a	2222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5069	T	81	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,gg,,,g,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5070	A	80	,$,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5071	A	81	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^I,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5072	A	81	,$,,,,,,,,,,,tt,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5073	G	80	,$c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5074	A	81	,$,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5075	A	80	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5076	T	80	,$,,,,,,,,,,,,,,,,,g,,,,,,,,,g,,,,,,,,,g,g,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5077	G	81	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,c,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5078	G	81	,$,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5079	A	81	,$,$,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5080	A	80	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5081	C	79	,,a,,,,,,,,,,,,a,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5082	A	81	,$,$,,,,,,,,,,,,,,,,,,,,,,t,t,,,,,,,,,,t,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5083	A	80	,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5084	C	78	,$,$,$,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5085	T	76	,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5086	C	79	,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5087	A	81	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222220222
+phiX174	5088	C	83	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5089	T	83	,$,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5090	A	83	,$,,,,,,,,,,,,,,,,,,,,,t,,,,,t,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5091	A	83	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5092	A	84	,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5093	A	85	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5094	A	84	,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5095	C	86	,,,,,,,,,,,,,a,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5096	C	87	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5097	A	86	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5098	A	86	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5099	G	86	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5100	C	86	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5101	T	87	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5102	G	87	,$,$,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5103	T	87	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5104	C	86	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,a,,,,,,,,,,,a,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5105	G	88	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5106	C	86	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5107	T	88	,$,$,$,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5108	A	85	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,tt,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5109	C	87	,$,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,a,^I,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5110	T	90	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5111	T	93	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,^K,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5112	C	93	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5113	C	92	,$,$,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5114	C	92	,$,$a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5115	A	90	,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5116	A	91	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5117	G	93	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,cc,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5118	A	93	,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5119	A	93	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5120	G	92	,$,$,$,$,$,$,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5121	C	86	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5122	T	85	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5123	G	85	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5124	T	85	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5125	T	84	,$,$,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5126	C	84	,$,,,,,a,,,,,,,,,,,aa,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5127	A	84	,$,$,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5128	G	79	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5129	A	80	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5130	A	82	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5131	T	82	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5132	C	80	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5133	A	79	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5134	G	77	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5135	A	76	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5136	A	75	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5137	T	76	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5138	G	76	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5139	A	76	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5140	G	76	,$,$,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5141	C	75	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5142	C	75	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5143	G	77	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5144	C	77	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5145	A	77	,$,,,,,,,,,,,,,,,,,,,,,,,,tt,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5146	A	77	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5147	C	75	,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5148	T	75	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5149	T	79	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5150	C	78	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5151	G	78	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5152	G	80	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222222202
+phiX174	5153	G	81	,$,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,^K,^I,	222222222222222222222222222222222222222222222222222222222222222222222222222220222
+phiX174	5154	A	80	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5155	T	79	,$,$,$,$g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5156	G	75	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,	222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5157	A	74	,$,$,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5158	A	72	,$,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5159	A	71	,$,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5160	A	72	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5161	T	71	,$,$,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5162	G	70	,$,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5163	C	70	,$,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,^Ka	2222222222222222222222222222222222222222222222222222222222222222222220
+phiX174	5164	T	69	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,	222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5165	C	67	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5166	A	66	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5167	C	66	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5168	A	66	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5169	A	68	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5170	T	67	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5171	G	69	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,c,,,,,,,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5172	A	69	t$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	/22222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5173	C	68	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5174	A	69	,$,$,,,,,,t,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5175	A	67	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5176	A	68	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,t,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5177	T	68	,,,,,,,,g,,,,,,,g,,g,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,^K,^I,	22222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5178	C	68	,$,$a,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5179	T	66	,$,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,g,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5180	G	62	,$,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222
+phiX174	5181	T	58	,$,,,,,,,,,,,g,,,,,,,g,,,,,,,,,,,,,,,g,,,,,,,,,,g,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222
+phiX174	5182	C	58	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222
+phiX174	5183	C	58	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222
+phiX174	5184	A	57	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222
+phiX174	5185	C	57	,$,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222
+phiX174	5186	G	56	,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222
+phiX174	5187	G	55	,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	2222222222222222222222222222222222222222222222222222222
+phiX174	5188	A	58	,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222
+phiX174	5189	G	58	,$,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,	2222222222222222222222222222222222222222222222222222222222
+phiX174	5190	T	57	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,	222222222222222222222222222222222222222222222222222222222
+phiX174	5191	G	58	,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222
+phiX174	5192	C	58	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,	2222222222222222222222222222222222222222222222222222222222
+phiX174	5193	T	58	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222
+phiX174	5194	T	58	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222
+phiX174	5195	A	58	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222
+phiX174	5196	A	58	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,tt,,,,,,,,,,,,,,,,,,,,,^K,^K,	2222222222222222222222222222222222222222222222222222222222
+phiX174	5197	T	58	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222
+phiX174	5198	C	61	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222
+phiX174	5199	C	59	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,	22222222222222222222222222222222222222222222222222222222222
+phiX174	5200	A	57	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,t,,,,,,,,,	222222222222222222222222222222222222222222222222222222222
+phiX174	5201	A	59	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,^K,^K,^K,	22222222222222222222222222222222222222222222222222222222222
+phiX174	5202	C	59	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222
+phiX174	5203	T	60	,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222
+phiX174	5204	T	62	,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222
+phiX174	5205	A	63	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5206	C	63	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5207	C	64	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^I,	2222222222222222222222222222222222222222222222222222222222222222
+phiX174	5208	A	66	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5209	A	68	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5210	G	70	,$,,,,,,,,,,,,,,,,c,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5211	C	70	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^I,	2222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5212	T	70	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5213	G	68	,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5214	G	67	,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,c,,,,,,,,,,,,,,c,,,,,,,,,,,,,,c,,,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5215	G	67	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,	2222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5216	T	68	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,g,,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5217	T	68	,,g,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5218	A	70	,$,$,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5219	C	65	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222
+phiX174	5220	G	64	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222
+phiX174	5221	A	65	,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222
+phiX174	5222	C	62	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222
+phiX174	5223	G	63	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5224	C	65	,,,,,,,,,,,,a,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222
+phiX174	5225	G	65	,,,,,,,,,,,,,,,,,c,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222
+phiX174	5226	A	65	,,,t,,,,,,,,,,t,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222
+phiX174	5227	C	66	,,,,,,,,,,,,,,,,,,a,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5228	G	67	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5229	C	68	,$,$,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,a,^K,	22222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5230	C	66	,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5231	G	67	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5232	T	67	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5233	T	66	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,g,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5234	C	67	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5235	A	68	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5236	A	68	,$,,,,,,,,,,,,,,t,,,,,t,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5237	C	67	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5238	C	67	,$,$,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,^K,	2222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5239	A	66	,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5240	G	66	,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5241	A	63	,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5242	T	64	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,gg,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222
+phiX174	5243	A	63	,$,$,t,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,t	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5244	T	62	,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,^I,	22222222222222222222222222222222222222222222222222222222222222
+phiX174	5245	T	64	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222
+phiX174	5246	G	63	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5247	A	62	,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222
+phiX174	5248	A	63	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5249	G	63	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,c,,,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5250	C	63	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5251	A	63	,$,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5252	G	63	,,,,,,,,,,,,,,,,,,,,,,cc,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,^K,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5253	A	63	t$,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	/22222222222222222222222222222222222222222222222222222222222222
+phiX174	5254	A	62	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222
+phiX174	5255	C	63	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5256	G	64	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^I,	2222222222222222222222222222222222222222222222222222222222222222
+phiX174	5257	C	63	,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5258	A	63	,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222/2
+phiX174	5259	A	64	,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222/22
+phiX174	5260	A	64	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222/22
+phiX174	5261	A	65	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,^K,^K,	222222222222222222222222222222222222222222222222222222222222/2222
+phiX174	5262	A	69	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,^K,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5263	G	68	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5264	A	67	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5265	G	66	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5266	A	67	,$,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,t,,,,,,t,,,,,,,,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5267	G	67	,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5268	A	64	,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222
+phiX174	5269	T	65	,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222
+phiX174	5270	G	66	,$,$,$,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5271	A	63	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5272	G	63	,$,$,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5273	A	63	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5274	T	64	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222
+phiX174	5275	T	63	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5276	G	70	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,^K,^K,^K,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5277	A	69	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5278	G	69	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5279	G	67	,$,$,$c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222
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+phiX174	5281	T	64	,$,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,gg,,,^K,	2222222222222222222222222222222222222222222222222222222222222222
+phiX174	5282	G	64	,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222
+phiX174	5283	G	66	,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5284	G	63	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222
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+phiX174	5286	A	64	,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222
+phiX174	5287	A	64	,$,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222
+phiX174	5288	A	63	,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222
+phiX174	5289	G	64	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222
+phiX174	5290	T	66	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5291	T	65	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222
+phiX174	5292	A	66	,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5293	C	64	,$,$,,a,a,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,^K,	2222222222222222222222222222222222222222222222222222222222222222
+phiX174	5294	T	64	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,g,,,g,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222
+phiX174	5295	G	68	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,^K,^K,^K,^I,	22222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5296	T	69	,$,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5297	A	69	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5298	G	69	,$,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5299	C	70	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,^K,^K,	2222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5300	C	70	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5301	G	71	,$,,,,,,,,,,,,c,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5302	A	72	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5303	C	72	,$,,,,a,,,a,,,,,,a,,,,,,,,,a,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5304	G	71	,$,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,cc,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5305	T	71	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5306	T	72	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,g,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222/
+phiX174	5307	T	73	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g^K,	22222222222222222222222222222222222222222222222222222222222222222222222/2
+phiX174	5308	T	75	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5309	G	74	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5310	G	74	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5311	C	75	,$,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5312	G	74	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5313	G	74	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5314	C	74	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5315	G	74	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,^K,	22222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5316	C	75	,$,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5317	A	75	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,^K,	222222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5318	A	74	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5319	C	74	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5320	C	74	,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5321	T	74	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5322	G	73	,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5323	T	73	,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,	2222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5324	G	73	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5325	A	72	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5326	C	71	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5327	G	70	,$,$,$,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5328	A	67	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5329	C	66	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5330	A	66	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222222222
+phiX174	5331	A	64	,$,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222222222222
+phiX174	5332	A	60	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222
+phiX174	5333	T	60	,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222
+phiX174	5334	C	60	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,	222222222222222222222222222222222222222222222222222222222222
+phiX174	5335	T	60	,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222222
+phiX174	5336	G	57	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222222
+phiX174	5337	C	56	a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222
+phiX174	5338	T	56	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222222222222222222
+phiX174	5339	C	55	,$,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222222
+phiX174	5340	A	54	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222
+phiX174	5341	A	54	,,,,,,,,,,,,,,,,,t,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222
+phiX174	5342	A	54	,$,$,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222222222222222
+phiX174	5343	T	52	,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222222
+phiX174	5344	T	49	,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,	2222222222222222222222222222222222222222222222222
+phiX174	5345	T	49	,$,$,$,$,$,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222222222222222
+phiX174	5346	A	42	,$,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222222
+phiX174	5347	T	41	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222222
+phiX174	5348	G	39	,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,	222222222222222222222222222222222222222
+phiX174	5349	C	39	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	222222222222222222222222222222222222222
+phiX174	5350	G	39	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,	222222222222222222222222222222222222222
+phiX174	5351	C	38	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222222
+phiX174	5352	G	37	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222222222
+phiX174	5353	C	35	,a,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222
+phiX174	5354	T	35	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222222
+phiX174	5355	T	33	g$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	.22222222222222222222222222222222
+phiX174	5356	C	32	,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,	22222222222222222222222222222222
+phiX174	5357	G	32	,,,c,,,,,,,,,,,,,,,,,,,,,c,,,,,,	22222222222222222222222222222222
+phiX174	5358	A	32	,$,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,	22222222222222222222222222222222
+phiX174	5359	T	31	,$,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	2222222222222222222222222222222
+phiX174	5360	A	29	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	22222222222222222222222222222
+phiX174	5361	A	29	,$t,,,,,,t,,,,,,,,,,,,,,,,,,,,	2/222222222222222222222222222
+phiX174	5362	A	28	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,	/222222222222222222222222222
+phiX174	5363	A	27	,$,$,t,,,,,,,,,,,,,,,,,,,,,,,	222/22222222222222222222222
+phiX174	5364	A	25	,$,$,$,$,,,,,,,,,,,,,,,,,,,,,	2/22222222222222222222222
+phiX174	5365	T	21	,$,,,,,,,,,,,,,,g,,g,,	222222222222222222222
+phiX174	5366	G	20	,$,,c,,,,,,,,,,,,,,,,	22222222222222222222
+phiX174	5367	A	19	,$,,,,,,,,,,,,,,,,,,	2222222222222222222
+phiX174	5368	T	18	,$,$,,,,,,,,,,,,,,,,	222222222222222222
+phiX174	5369	T	16	,,,,,,,,,,,,,,,,	2222222222222222
+phiX174	5370	G	16	,$,$,,,,,,,,,,,,,,	2222222222222222
+phiX174	5371	G	14	,$,$,,,,,,,,,,,c	22222222222222
+phiX174	5372	C	12	,,,,,,,,,,,,	222222222222
+phiX174	5373	G	12	,,,,,,,,,,,,	022222222222
+phiX174	5374	T	11	,,,,,,,,,,,	22222222222
+phiX174	5375	A	11	,$,,,,,,,,,,	22222222222
+phiX174	5376	T	10	,$,,,,,,,,,	2222222222
+phiX174	5377	C	9	,$,$,$,,,,,,	222222222
+phiX174	5378	C	6	,,,,,,	222222
+phiX174	5379	A	6	,,,,,,	202222
+phiX174	5380	A	5	,$,,,,	22222
+phiX174	5381	C	4	,,,,	2222
+phiX174	5382	C	4	,,,,	2222
+phiX174	5383	T	4	,,,,	2222
+phiX174	5384	G	4	,$,$,,	2222
+phiX174	5385	C	2	,$,	22
+phiX174	5386	A	1	,$	2
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_mpileup/test-data/samtools_mpileup_out_3.pileup	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,43 @@
+phiX174	1411	A	1	^P.	$
+phiX174	1412	G	3	.^D.^F.	"$$
+phiX174	1413	C	5	...^D.^F.	"""$$
+phiX174	1414	G	6	.....^F.	#####$
+phiX174	1415	C	7	......^F.	%%%%%%&
+phiX174	1416	C	8	.......^F.	$$$$$$$$
+phiX174	1417	G	9	........^F.	"#######$
+phiX174	1418	T	10	.........^F.	"""""""""$
+phiX174	1419	G	10	..........	"""""'&'%$
+phiX174	1420	G	10	..........	""""""""""
+phiX174	1421	A	10	..........	""""""""""
+phiX174	1422	T	10	..........	""""""""""
+phiX174	1423	G	10	..........	"""""""""#
+phiX174	1424	C	10	..A.AAAAAA	%"""""""""
+phiX174	1425	C	10	..........	$$$"""""""
+phiX174	1426	T	10	..........	#####"""""
+phiX174	1427	G	10	..........	######""""
+phiX174	1428	A	10	..........	""""""""""
+phiX174	1429	C	10	..........	((((((&(""
+phiX174	1430	C	10	..........	$$$$$$$$$"
+phiX174	1431	G	10	..........	##########
+phiX174	1432	T	10	..........	""""""""""
+phiX174	1433	A	10	..........	##########
+phiX174	1434	C	10	..........	((((((&(%$
+phiX174	1435	C	10	..........	$$$$$$$$$$
+phiX174	1436	G	10	..........	##########
+phiX174	1437	A	10	..........	"""""""""!
+phiX174	1438	G	10	..........	"""""####!
+phiX174	1439	G	10	..........	"""""""""!
+phiX174	1440	C	10	..........	"""""""""!
+phiX174	1441	T	10	..........	""""""""#!
+phiX174	1442	A	10	..........	$$$%%%&&%!
+phiX174	1443	A	10	.-1C.-1C..-1C......	"""""""""!
+phiX174	1444	C	10	**.*......	!!"!"""""!
+phiX174	1445	C	10	..........	!!&!%%%&%!
+phiX174	1446	C	10	..........	!!"!"""""!
+phiX174	1447	T	10	.$..$.......	!!#!"""""!
+phiX174	1448	A	8	.$..$.....	!!#%%$$!
+phiX174	1449	A	6	.$.$....	!""""!
+phiX174	1450	T	4	.$...	"""!
+phiX174	1451	G	3	.$..	#"!
+phiX174	1452	A	2	.$.	"!
+phiX174	1453	G	1	.$	!
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_mpileup/test-data/samtools_mpileup_out_4.vcf	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,22 @@
+##fileformat=VCFv4.2
+##FILTER=<ID=PASS,Description="All filters passed">
+##samtoolsVersion=1.1+htslib-1.1
+##samtoolsCommand=samtools mpileup --VCF --uncompressed -f /var/galaxy/workspace/CleanGalaxy/tool-data/phiX/sam_indexes/phiX/phiX.fa -C 0 -d 200 -E -q 0 -Q 43 -g -e 20 -h 100 -L 250 -m 1 --open-prob 40 -F 0.002 -e 40 --output /tmp/tmp5TzrZC/tmpDtGVov/database/files/000/dataset_756.dat /tmp/tmp5TzrZC/tmpDtGVov/database/files/000/dataset_755.dat
+##reference=file:///var/galaxy/workspace/CleanGalaxy/tool-data/phiX/sam_indexes/phiX/phiX.fa
+##contig=<ID=phiX174,length=5386>
+##ALT=<ID=X,Description="Represents allele(s) other than observed.">
+##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
+##INFO=<ID=IDV,Number=1,Type=Integer,Description="Maximum number of reads supporting an indel">
+##INFO=<ID=IMF,Number=1,Type=Float,Description="Maximum fraction of reads supporting an indel">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
+##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias for filtering splice-site artefacts in RNA-seq data (bigger is better)",Version="3">
+##INFO=<ID=RPB,Number=1,Type=Float,Description="Mann-Whitney U test of Read Position Bias (bigger is better)">
+##INFO=<ID=MQB,Number=1,Type=Float,Description="Mann-Whitney U test of Mapping Quality Bias (bigger is better)">
+##INFO=<ID=BQB,Number=1,Type=Float,Description="Mann-Whitney U test of Base Quality Bias (bigger is better)">
+##INFO=<ID=MQSB,Number=1,Type=Float,Description="Mann-Whitney U test of Mapping Quality vs Strand Bias (bigger is better)">
+##INFO=<ID=SGB,Number=1,Type=Float,Description="Segregation based metric.">
+##INFO=<ID=MQ0F,Number=1,Type=Float,Description="Fraction of MQ0 reads (smaller is better)">
+##INFO=<ID=I16,Number=16,Type=Float,Description="Auxiliary tag used for calling, see description of bcf_callret1_t in bam2bcf.h">
+##INFO=<ID=QS,Number=R,Type=Float,Description="Auxiliary tag used for calling">
+##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	/tmp/tmp5TzrZC/tmpDtGVov/database/files/000/dataset_755.dat
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_mpileup/tool-data/fasta_indexes.loc.sample	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,29 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of Samtools indexed sequences data files.  You will need
+#to create these data files and then create a fasta_indexes.loc file
+#similar to this one (store it in this directory) that points to
+#the directories in which those files are stored. The fasta_indexes.loc
+#file has this format (white space characters are TAB characters):
+#
+# <unique_build_id>	<dbkey>	<display_name>	<file_base_path>
+#
+#So, for example, if you had hg19 Canonical indexed stored in
+#
+# /depot/data2/galaxy/hg19/sam/,
+#
+#then the fasta_indexes.loc entry would look like this:
+#
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
+#
+#and your /depot/data2/galaxy/hg19/sam/ directory
+#would contain hg19canon.fa and hg19canon.fa.fai files.
+#
+#Your fasta_indexes.loc file should include an entry per line for
+#each index set you have stored.  The file in the path does actually
+#exist, but it should never be directly used. Instead, the name serves
+#as a prefix for the index file.  For example:
+#
+#hg18canon	hg18	Human (Homo sapiens): hg18 Canonical	/depot/data2/galaxy/hg18/sam/hg18canon.fa
+#hg18full	hg18	Human (Homo sapiens): hg18 Full	/depot/data2/galaxy/hg18/sam/hg18full.fa
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
+#hg19full	hg19	Human (Homo sapiens): hg19 Full	/depot/data2/galaxy/hg19/sam/hg19full.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_mpileup/tool_data_table_conf.xml.sample	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,7 @@
+<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
+<tables>
+    <table name="fasta_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/fasta_indexes.loc" />
+    </table>
+</tables>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_phase/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
Binary file samtools_phase/test-data/empty_file.bam has changed
Binary file samtools_phase/test-data/samtools_phase_in_1.bam has changed
Binary file samtools_phase/test-data/samtools_phase_in_2.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_phase/test-data/samtools_phase_out_1_log.txt	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,30 @@
+CC
+CC	Descriptions:
+CC
+CC	  CC      comments
+CC	  PS      start of a phase set
+CC	  FL      filtered region
+CC	  M[012]  markers; 0 for singletons, 1 for phased and 2 for filtered
+CC	  EV      supporting reads; SAM format
+CC	  //      end of a phase set
+CC
+CC	Formats of PS, FL and M[012] lines (1-based coordinates):
+CC
+CC	  PS  chr  phaseSetStart  phaseSetEnd
+CC	  FL  chr  filterStart    filterEnd
+CC	  M?  chr  PS  pos  allele0  allele1  hetIndex  #supports0  #errors0  #supp1  #err1
+CC
+CC
+PS	chrI	1187	1290
+M1	chrI	1187	1187	T	A	1	2	0	4	0
+M1	chrI	1187	1216	T	A	2	3	0	4	0
+M1	chrI	1187	1222	C	A	3	3	0	3	1
+M1	chrI	1187	1290	A	T	4	1	0	0	0
+EV	0	chrI	1	40	3M	*	0	0	AAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1145
+EV	0	chrI	1	40	3M	*	0	0	TTC	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1157
+EV	0	chrI	1	40	3M	*	0	0	TTC	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1141
+EV	0	chrI	1	40	3M	*	0	0	AAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1147
+EV	0	chrI	1	40	3M	*	0	0	AAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1176
+EV	0	chrI	1	40	3M	*	0	0	AAC	*	YP:i:1	YF:i:0	YI:i:2	YO:i:1	YS:i:1164
+EV	0	chrI	2	40	3M	*	0	0	TCA	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1215
+//
Binary file samtools_phase/test-data/samtools_phase_out_1_phase0.bam has changed
Binary file samtools_phase/test-data/samtools_phase_out_1_phase1.bam has changed
Binary file samtools_phase/test-data/samtools_phase_out_2_chimera.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_phase/test-data/samtools_phase_out_2_log.txt	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,65 @@
+CC
+CC	Descriptions:
+CC
+CC	  CC      comments
+CC	  PS      start of a phase set
+CC	  FL      filtered region
+CC	  M[012]  markers; 0 for singletons, 1 for phased and 2 for filtered
+CC	  EV      supporting reads; SAM format
+CC	  //      end of a phase set
+CC
+CC	Formats of PS, FL and M[012] lines (1-based coordinates):
+CC
+CC	  PS  chr  phaseSetStart  phaseSetEnd
+CC	  FL  chr  filterStart    filterEnd
+CC	  M?  chr  PS  pos  allele0  allele1  hetIndex  #supports0  #errors0  #supp1  #err1
+CC
+CC
+PS	chrI	1412	1542
+M1	chrI	1412	1412	T	C	1	7	0	9	0
+M1	chrI	1412	1414	G	A	2	7	0	9	0
+M1	chrI	1412	1421	G	A	3	7	0	9	0
+M1	chrI	1412	1471	T	C	4	5	0	6	0
+M1	chrI	1412	1542	C	T	5	3	0	2	0
+EV	0	chrI	1	40	3M	*	0	0	TGG	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1366
+EV	0	chrI	1	40	3M	*	0	0	CAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1343
+EV	0	chrI	1	40	4M	*	0	0	TGGT	*	YP:i:0	YF:i:0	YI:i:4	YO:i:0	YS:i:1409
+EV	0	chrI	1	40	3M	*	0	0	CAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1353
+EV	0	chrI	1	40	3M	*	0	0	TGG	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1358
+EV	0	chrI	1	40	4M	*	0	0	CAAC	*	YP:i:1	YF:i:0	YI:i:4	YO:i:0	YS:i:1374
+EV	0	chrI	1	40	3M	*	0	0	CAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1350
+EV	0	chrI	1	40	4M	*	0	0	CAAC	*	YP:i:1	YF:i:0	YI:i:4	YO:i:0	YS:i:1379
+EV	0	chrI	1	40	4M	*	0	0	CAAC	*	YP:i:1	YF:i:0	YI:i:4	YO:i:0	YS:i:1389
+EV	0	chrI	1	40	3M	*	0	0	TGG	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1341
+EV	0	chrI	1	40	3M	*	0	0	TGG	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1340
+EV	0	chrI	1	40	3M	*	0	0	CAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1359
+EV	0	chrI	1	40	4M	*	0	0	CAAC	*	YP:i:1	YF:i:0	YI:i:4	YO:i:0	YS:i:1392
+EV	0	chrI	1	40	4M	*	0	0	TGGT	*	YP:i:0	YF:i:0	YI:i:4	YO:i:0	YS:i:1407
+EV	0	chrI	1	40	3M	*	0	0	TGG	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1346
+EV	0	chrI	1	40	3M	*	0	0	CAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1348
+EV	0	chrI	4	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:1444
+EV	0	chrI	4	40	2M	*	0	0	CT	*	YP:i:1	YF:i:0	YI:i:2	YO:i:0	YS:i:1462
+EV	0	chrI	4	40	2M	*	0	0	CT	*	YP:i:1	YF:i:0	YI:i:2	YO:i:0	YS:i:1457
+EV	0	chrI	4	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:1468
+EV	0	chrI	4	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:1461
+//
+PS	chrI	3611	3731
+M1	chrI	3611	3611	T	A	6	5	0	4	0
+M1	chrI	3611	3659	C	T	7	9	0	6	0
+M1	chrI	3611	3731	T	A	8	4	0	1	1
+EV	0	chrI	6	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3569
+EV	0	chrI	6	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3569
+EV	0	chrI	6	40	2M	*	0	0	AT	*	YP:i:1	YF:i:0	YI:i:2	YO:i:0	YS:i:3576
+EV	0	chrI	6	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3571
+EV	0	chrI	6	40	2M	*	0	0	AT	*	YP:i:1	YF:i:0	YI:i:2	YO:i:0	YS:i:3568
+EV	0	chrI	6	40	2M	*	0	0	AT	*	YP:i:1	YF:i:0	YI:i:2	YO:i:0	YS:i:3578
+EV	0	chrI	6	40	2M	*	0	0	AT	*	YP:i:1	YF:i:0	YI:i:2	YO:i:0	YS:i:3590
+EV	0	chrI	6	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3559
+EV	0	chrI	6	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3609
+EV	0	chrI	7	40	2M	*	0	0	TA	*	YP:i:1	YF:i:0	YI:i:2	YO:i:0	YS:i:3644
+EV	0	chrI	7	40	2M	*	0	0	CT	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3651
+EV	0	chrI	7	40	2M	*	0	0	CT	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3637
+EV	0	chrI	7	40	2M	*	0	0	CT	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3647
+EV	0	chrI	7	40	2M	*	0	0	TT	*	YP:i:1	YF:i:0	YI:i:1	YO:i:1	YS:i:3657
+EV	0	chrI	7	40	2M	*	0	0	CT	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3644
+//
Binary file samtools_phase/test-data/samtools_phase_out_2_phase0.bam has changed
Binary file samtools_phase/test-data/samtools_phase_out_2_phase1.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_phase/test-data/samtools_phase_out_3_log.txt	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,65 @@
+CC
+CC	Descriptions:
+CC
+CC	  CC      comments
+CC	  PS      start of a phase set
+CC	  FL      filtered region
+CC	  M[012]  markers; 0 for singletons, 1 for phased and 2 for filtered
+CC	  EV      supporting reads; SAM format
+CC	  //      end of a phase set
+CC
+CC	Formats of PS, FL and M[012] lines (1-based coordinates):
+CC
+CC	  PS  chr  phaseSetStart  phaseSetEnd
+CC	  FL  chr  filterStart    filterEnd
+CC	  M?  chr  PS  pos  allele0  allele1  hetIndex  #supports0  #errors0  #supp1  #err1
+CC
+CC
+PS	chrI	1412	1542
+M1	chrI	1412	1412	T	C	1	7	0	9	0
+M1	chrI	1412	1414	G	A	2	7	0	9	0
+M1	chrI	1412	1421	G	A	3	7	0	9	0
+M1	chrI	1412	1471	T	C	4	5	0	6	0
+M1	chrI	1412	1542	C	T	5	3	0	2	0
+EV	0	chrI	1	40	3M	*	0	0	TGG	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1366
+EV	0	chrI	1	40	3M	*	0	0	CAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1343
+EV	0	chrI	1	40	4M	*	0	0	TGGT	*	YP:i:0	YF:i:0	YI:i:4	YO:i:0	YS:i:1409
+EV	0	chrI	1	40	3M	*	0	0	CAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1353
+EV	0	chrI	1	40	3M	*	0	0	TGG	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1358
+EV	0	chrI	1	40	4M	*	0	0	CAAC	*	YP:i:1	YF:i:0	YI:i:4	YO:i:0	YS:i:1374
+EV	0	chrI	1	40	3M	*	0	0	CAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1350
+EV	0	chrI	1	40	4M	*	0	0	CAAC	*	YP:i:1	YF:i:0	YI:i:4	YO:i:0	YS:i:1379
+EV	0	chrI	1	40	4M	*	0	0	CAAC	*	YP:i:1	YF:i:0	YI:i:4	YO:i:0	YS:i:1389
+EV	0	chrI	1	40	3M	*	0	0	TGG	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1341
+EV	0	chrI	1	40	3M	*	0	0	TGG	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1340
+EV	0	chrI	1	40	3M	*	0	0	CAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1359
+EV	0	chrI	1	40	4M	*	0	0	CAAC	*	YP:i:1	YF:i:0	YI:i:4	YO:i:0	YS:i:1392
+EV	0	chrI	1	40	4M	*	0	0	TGGT	*	YP:i:0	YF:i:0	YI:i:4	YO:i:0	YS:i:1407
+EV	0	chrI	1	40	3M	*	0	0	TGG	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1346
+EV	0	chrI	1	40	3M	*	0	0	CAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1348
+EV	0	chrI	4	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:1444
+EV	0	chrI	4	40	2M	*	0	0	CT	*	YP:i:1	YF:i:0	YI:i:2	YO:i:0	YS:i:1462
+EV	0	chrI	4	40	2M	*	0	0	CT	*	YP:i:1	YF:i:0	YI:i:2	YO:i:0	YS:i:1457
+EV	0	chrI	4	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:1468
+EV	0	chrI	4	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:1461
+//
+PS	chrI	3611	3731
+M1	chrI	3611	3611	T	A	6	5	0	4	0
+M1	chrI	3611	3659	C	T	7	9	0	6	0
+M1	chrI	3611	3731	T	A	8	4	0	1	1
+EV	0	chrI	6	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3569
+EV	0	chrI	6	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3569
+EV	0	chrI	6	40	2M	*	0	0	AT	*	YP:i:1	YF:i:0	YI:i:2	YO:i:0	YS:i:3576
+EV	0	chrI	6	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3571
+EV	0	chrI	6	40	2M	*	0	0	AT	*	YP:i:1	YF:i:0	YI:i:2	YO:i:0	YS:i:3568
+EV	0	chrI	6	40	2M	*	0	0	AT	*	YP:i:1	YF:i:0	YI:i:2	YO:i:0	YS:i:3578
+EV	0	chrI	6	40	2M	*	0	0	AT	*	YP:i:1	YF:i:0	YI:i:2	YO:i:0	YS:i:3590
+EV	0	chrI	6	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3559
+EV	0	chrI	6	40	2M	*	0	0	TC	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3609
+EV	0	chrI	7	40	2M	*	0	0	TA	*	YP:i:1	YF:i:0	YI:i:2	YO:i:0	YS:i:3644
+EV	0	chrI	7	40	2M	*	0	0	CT	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3651
+EV	0	chrI	7	40	2M	*	0	0	CT	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3637
+EV	0	chrI	7	40	2M	*	0	0	CT	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3647
+EV	0	chrI	7	40	2M	*	0	0	TT	*	YP:i:1	YF:i:0	YI:i:1	YO:i:1	YS:i:3657
+EV	0	chrI	7	40	2M	*	0	0	CT	*	YP:i:0	YF:i:0	YI:i:2	YO:i:0	YS:i:3644
+//
Binary file samtools_phase/test-data/samtools_phase_out_3_phase0.bam has changed
Binary file samtools_phase/test-data/samtools_phase_out_3_phase1.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_reheader/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_reheader/samtools_reheader.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,36 @@
+<tool id="samtools_reheader" name="Reheader" version="2.0.1">
+    <description>copy SAM/BAM header between datasets</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <expand macro="stdio"/>
+    <expand macro="version_command"/>
+    <command><![CDATA[
+        samtools reheader
+            '${input_header}'
+            '${input_file}'
+            > '${output}'
+    ]]></command>
+    <inputs>
+        <param name="input_header" type="data" format="sam,bam" label="Select source dataset" help="Header from this dataset will be used to replace header in the target dataset. May be either SAM or BAM dataset."/>
+        <param name="input_file" type="data" format="bam" label="Select target dataset" help="Header from the source dataset will be inserted here. Should be a BAM dataset."/>
+    </inputs>
+    <outputs>
+        <data format="bam" name="output" label="${tool.name} on ${on_string}" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input_header" ftype="bam" value="reheader_input_header.bam"/>
+            <param name="input_file" ftype="bam" value="reheader_input_file.bam"/>
+            <output name="output" ftype="bam" file="reheader_out.bam" lines_diff="1"/><!-- samtools adds reheader line -->
+        </test>
+    </tests>
+    <help>
+**What it does**
+
+Copies header from *source* dataset into *target* dataset using ``samtools reheader`` command.
+    </help>
+    <expand macro="citations"/>
+</tool>
+
Binary file samtools_reheader/test-data/reheader_input_file.bam has changed
Binary file samtools_reheader/test-data/reheader_input_header.bam has changed
Binary file samtools_reheader/test-data/reheader_out.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_slice_bam/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
Binary file samtools_slice_bam/test-data/bam-slice-input.bam has changed
Binary file samtools_slice_bam/test-data/bam-slice-test1.bam has changed
Binary file samtools_slice_bam/test-data/bam-slice-test2.bam has changed
Binary file samtools_slice_bam/test-data/bam-slice-test3.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_slice_bam/test-data/bam-slice.bed	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,38 @@
+chrM	5	1000	myInterval	0	+
+chrM	577	647	TRNF	0	+
+chrM	648	1601	RNR1	0	+
+chrM	1602	1670	TRNV	0	+
+chrM	1671	3229	RNR2	0	+
+chrM	3230	3304	TRNL1	0	+
+chrM	3307	4262	ND1	0	+
+chrM	4263	4331	TRNI	0	+
+chrM	4329	4400	TRNQ	0	-
+chrM	4402	4469	TRNM	0	+
+chrM	4470	5511	ND2	0	+
+chrM	5512	5579	TRNW	0	+
+chrM	5587	5655	TRNA	0	-
+chrM	5657	5729	TRNN	0	-
+chrM	5761	5826	TRNC	0	-
+chrM	5826	5891	TRNY	0	-
+chrM	5904	7445	COX1	0	+
+chrM	7446	7514	TRNS1	0	-
+chrM	7518	7585	TRND	0	+
+chrM	7586	8269	COX2	0	+
+chrM	8295	8364	TRNK	0	+
+chrM	8366	8572	ATP8	0	+
+chrM	8527	9207	ATP6	0	+
+chrM	9207	9990	COX3	0	+
+chrM	9991	10058	TRNG	0	+
+chrM	10059	10404	ND3	0	+
+chrM	10405	10469	TRNR	0	+
+chrM	10470	10766	ND4L	0	+
+chrM	10760	12137	ND4	0	+
+chrM	12138	12206	TRNH	0	+
+chrM	12207	12265	TRNS2	0	+
+chrM	12266	12336	TRNL2	0	+
+chrM	12337	14148	ND5	0	+
+chrM	14149	14673	ND6	0	-
+chrM	14674	14742	TRNE	0	-
+chrM	14747	15887	CYTB	0	+
+chrM	15888	15953	TRNT	0	+
+chrM	15956	16023	TRNP	0	-
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_sort/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
Binary file samtools_sort/test-data/1.bam has changed
Binary file samtools_sort/test-data/1_sort.bam has changed
Binary file samtools_sort/test-data/1_sort_read_names.bam has changed
Binary file samtools_sort/test-data/name.sort.expected.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_sort/test-data/name.sort.expected.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,28 @@
+@HD	VN:1.4	SO:queryname
+@SQ	SN:insert	LN:599
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+@SQ	SN:ref3	LN:4
+@RG	ID:fish	PG:donkey
+@RG	ID:cow	PU:13_&^&&*(:332
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
+@PG	ID:moose
+@PG	PP:moose	ID:cow
+@CO	
+r000	99	insert	50	30	10M	=	80	30	ATTTAGCTAC	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r000	211	insert	80	30	10M	=	50	-30	CCCAATCATT	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:fish	PG:Z:colt
+r001	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:fish	PG:Z:colt
+r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	PG:Z:colt
+r003	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:cow
+r003	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:cow	PG:Z:colt
+r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt	PG:Z:colt
+u1	4	*	0	30	23M	*	0	0	TAATTAAGTCTACAGAAAAAAAA	???????????????????????
+x1	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:colt	PG:Z:bull
+x2	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:colt	PG:Z:bull
+x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:fish	PG:Z:bull
+x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:fish	PG:Z:bull
+x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:fish	PG:Z:bull
+x6	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow
Binary file samtools_sort/test-data/pos.sort.expected.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_sort/test-data/pos.sort.expected.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,28 @@
+@HD	VN:1.4	SO:coordinate
+@SQ	SN:insert	LN:599
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+@SQ	SN:ref3	LN:4
+@RG	ID:fish	PG:donkey
+@RG	ID:cow	PU:13_&^&&*(:332
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
+@PG	ID:moose
+@PG	PP:moose	ID:cow
+@CO	
+r000	99	insert	50	30	10M	=	80	30	ATTTAGCTAC	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r000	211	insert	80	30	10M	=	50	-30	CCCAATCATT	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r001	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:fish	PG:Z:colt
+r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	PG:Z:colt
+r003	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:cow
+r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt	PG:Z:colt
+r003	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:cow	PG:Z:colt
+r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:fish	PG:Z:colt
+x1	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:colt	PG:Z:bull
+x2	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:colt	PG:Z:bull
+x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:fish	PG:Z:bull
+x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:fish	PG:Z:bull
+x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:fish	PG:Z:bull
+x6	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow
+u1	4	*	0	30	23M	*	0	0	TAATTAAGTCTACAGAAAAAAAA	???????????????????????
Binary file samtools_sort/test-data/tag.as.sort.expected.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_sort/test-data/tag.as.sort.expected.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,24 @@
+@HD	VN:1.4	SO:unknown
+@SQ	SN:insert	LN:599
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+@SQ	SN:ref3	LN:4
+@PG	ID:llama
+@RG	ID:fish	PG:llama
+@RG	ID:cow	PU:13_&^&&*(:332	PG:donkey
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
+@CO	Do you know?
+r006	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:colt	PG:Z:donkey	FI:i:3
+x11	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:cow	PG:Z:bull	FI:Z:a
+r007	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt	PG:Z:donkey	AS:i:-5	FI:f:3.5
+x10	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:cow	PG:Z:bull	AS:i:0	FI:A:b
+r007	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:colt	PG:Z:donkey	AS:i:1	FI:i:4
+r005	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:colt	PG:Z:donkey	AS:i:10	FI:i:5
+x8	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:cow	PG:Z:bull	AS:i:10	FI:f:1.5
+r006	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	RG:Z:colt	PG:Z:donkey	AS:i:20	FI:f:4.5
+x9	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:cow	PG:Z:bull	AS:i:20	FI:i:1
+x7	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:cow	PG:Z:bull	AS:i:50	FI:i:2
+r005	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:colt	PG:Z:donkey	AS:i:100	FI:f:2.5
+x12	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow	PG:Z:bull	AS:i:65100
Binary file samtools_sort/test-data/tag.fi.sort.expected.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_sort/test-data/tag.fi.sort.expected.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,24 @@
+@HD	VN:1.4	SO:unknown
+@SQ	SN:insert	LN:599
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+@SQ	SN:ref3	LN:4
+@PG	ID:llama
+@RG	ID:fish	PG:llama
+@RG	ID:cow	PU:13_&^&&*(:332	PG:donkey
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
+@CO	Do you know?
+x12	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow	PG:Z:bull	AS:i:65100
+x10	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:cow	PG:Z:bull	AS:i:0	FI:A:b
+x11	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:cow	PG:Z:bull	FI:Z:a
+x9	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:cow	PG:Z:bull	AS:i:20	FI:i:1
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+r005	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:colt	PG:Z:donkey	AS:i:100	FI:f:2.5
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+r005	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:colt	PG:Z:donkey	AS:i:10	FI:i:5
Binary file samtools_sort/test-data/tag.rg.n.sort.expected.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_sort/test-data/tag.rg.n.sort.expected.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,28 @@
+@HD	VN:1.4	SO:unknown
+@SQ	SN:insert	LN:599
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+@SQ	SN:ref2	LN:40
+@SQ	SN:ref3	LN:4
+@RG	ID:fish	PG:donkey
+@RG	ID:cow	PU:13_&^&&*(:332
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
+@PG	ID:moose
+@PG	PP:moose	ID:cow
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+r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	PG:Z:colt
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+r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt	PG:Z:colt
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+r000	99	insert	50	30	10M	=	80	30	ATTTAGCTAC	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r000	211	insert	80	30	10M	=	50	-30	CCCAATCATT	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r003	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:cow
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+r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:fish	PG:Z:colt
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+x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:fish	PG:Z:bull
+x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:fish	PG:Z:bull
+x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:fish	PG:Z:bull
Binary file samtools_sort/test-data/tag.rg.sort.expected.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_sort/test-data/tag.rg.sort.expected.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,28 @@
+@HD	VN:1.4	SO:unknown
+@SQ	SN:insert	LN:599
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+@SQ	SN:ref2	LN:40
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+@RG	ID:fish	PG:donkey
+@RG	ID:cow	PU:13_&^&&*(:332
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
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+@PG	PP:moose	ID:cow
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+r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	PG:Z:colt
+u1	4	*	0	30	23M	*	0	0	TAATTAAGTCTACAGAAAAAAAA	???????????????????????
+r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt	PG:Z:colt
+x1	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:colt	PG:Z:bull
+x2	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:colt	PG:Z:bull
+r000	99	insert	50	30	10M	=	80	30	ATTTAGCTAC	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r000	211	insert	80	30	10M	=	50	-30	CCCAATCATT	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r003	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:cow
+r003	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:cow	PG:Z:colt
+x6	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow
+r001	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:fish	PG:Z:colt
+r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:fish	PG:Z:colt
+x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:fish	PG:Z:bull
+x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:fish	PG:Z:bull
+x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:fish	PG:Z:bull
Binary file samtools_sort/test-data/test_input_1_a.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_split/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
Binary file samtools_split/test-data/phiX.bam has changed
Binary file samtools_split/test-data/phiX_Elephant.bam has changed
Binary file samtools_split/test-data/phiX_Human.bam has changed
Binary file samtools_split/test-data/phiX_Mouse.bam has changed
Binary file samtools_split/test-data/samtools_split_out.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/1.stats.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,383 @@
+# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
+# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
+CHK	1a1c1362	29c426ae	7bab45da
+# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
+SN	raw total sequences:	2
+SN	filtered sequences:	0
+SN	sequences:	2
+SN	is sorted:	1
+SN	1st fragments:	1
+SN	last fragments:	1
+SN	reads mapped:	2
+SN	reads mapped and paired:	2	# paired-end technology bit set + both mates mapped
+SN	reads unmapped:	0
+SN	reads properly paired:	2	# proper-pair bit set
+SN	reads paired:	2	# paired-end technology bit set
+SN	reads duplicated:	0	# PCR or optical duplicate bit set
+SN	reads MQ0:	0	# mapped and MQ=0
+SN	reads QC failed:	0
+SN	non-primary alignments:	0
+SN	total length:	70	# ignores clipping
+SN	total first fragment length:	35	# ignores clipping
+SN	total last fragment length:	35	# ignores clipping
+SN	bases mapped:	70	# ignores clipping
+SN	bases mapped (cigar):	70	# more accurate
+SN	bases trimmed:	0
+SN	bases duplicated:	0
+SN	mismatches:	0	# from NM fields
+SN	error rate:	0.000000e+00	# mismatches / bases mapped (cigar)
+SN	average length:	35
+SN	average first fragment length:	35
+SN	average last fragment length:	35
+SN	maximum length:	35
+SN	maximum first fragment length:	35
+SN	maximum last fragment length:	35
+SN	average quality:	255.0
+SN	insert size average:	100.0
+SN	insert size standard deviation:	0.0
+SN	inward oriented pairs:	1
+SN	outward oriented pairs:	0
+SN	pairs with other orientation:	0
+SN	pairs on different chromosomes:	0
+SN	percentage of properly paired reads (%):	100.0
+# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+FFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
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+FFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+LFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
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+LFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+# Mismatches per cycle and quality. Use `grep ^MPC | cut -f 2-` to extract this part.
+# Columns correspond to qualities, rows to cycles. First column is the cycle number, second
+# is the number of N's and the rest is the number of mismatches
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+MPC	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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+MPC	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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+MPC	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
+GCF	28.39	0
+GCF	58.29	1
+# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
+GCL	21.36	0
+GCL	43.97	1
+# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+GCC	1	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	2	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	3	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	4	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	5	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	6	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	7	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	8	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	9	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	10	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	11	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	12	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	13	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	14	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	15	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	16	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	17	0.00	50.00	0.00	50.00	0.00	0.00
+GCC	18	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	19	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	20	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	21	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	22	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	23	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	24	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	25	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	26	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	27	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	28	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	29	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	30	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	31	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	32	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	33	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	34	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	35	0.00	0.00	50.00	50.00	0.00	0.00
+# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+FBC	1	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	2	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	3	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	4	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	5	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	6	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	7	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	8	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	9	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	10	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	11	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	12	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	13	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	14	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	15	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	16	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	17	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	18	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	19	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	20	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	21	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	22	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	23	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	24	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	25	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	26	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	27	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	28	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	29	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	30	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	31	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	32	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	33	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	34	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	35	0.00	0.00	100.00	0.00	0.00	0.00
+# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+LBC	1	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	2	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	3	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	4	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	5	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	6	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	7	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	8	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	9	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	10	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	11	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	12	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	13	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	14	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	15	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	16	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	17	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	18	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	19	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	20	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	21	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	22	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	23	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	24	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	25	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	26	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	27	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	28	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	29	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	30	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	31	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	32	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	33	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	34	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	35	0.00	0.00	0.00	100.00	0.00	0.00
+# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
+IS	0	0	0	0	0
+IS	1	0	0	0	0
+IS	2	0	0	0	0
+IS	3	0	0	0	0
+IS	4	0	0	0	0
+IS	5	0	0	0	0
+IS	6	0	0	0	0
+IS	7	0	0	0	0
+IS	8	0	0	0	0
+IS	9	0	0	0	0
+IS	10	0	0	0	0
+IS	11	0	0	0	0
+IS	12	0	0	0	0
+IS	13	0	0	0	0
+IS	14	0	0	0	0
+IS	15	0	0	0	0
+IS	16	0	0	0	0
+IS	17	0	0	0	0
+IS	18	0	0	0	0
+IS	19	0	0	0	0
+IS	20	0	0	0	0
+IS	21	0	0	0	0
+IS	22	0	0	0	0
+IS	23	0	0	0	0
+IS	24	0	0	0	0
+IS	25	0	0	0	0
+IS	26	0	0	0	0
+IS	27	0	0	0	0
+IS	28	0	0	0	0
+IS	29	0	0	0	0
+IS	30	0	0	0	0
+IS	31	0	0	0	0
+IS	32	0	0	0	0
+IS	33	0	0	0	0
+IS	34	0	0	0	0
+IS	35	0	0	0	0
+IS	36	0	0	0	0
+IS	37	0	0	0	0
+IS	38	0	0	0	0
+IS	39	0	0	0	0
+IS	40	0	0	0	0
+IS	41	0	0	0	0
+IS	42	0	0	0	0
+IS	43	0	0	0	0
+IS	44	0	0	0	0
+IS	45	0	0	0	0
+IS	46	0	0	0	0
+IS	47	0	0	0	0
+IS	48	0	0	0	0
+IS	49	0	0	0	0
+IS	50	0	0	0	0
+IS	51	0	0	0	0
+IS	52	0	0	0	0
+IS	53	0	0	0	0
+IS	54	0	0	0	0
+IS	55	0	0	0	0
+IS	56	0	0	0	0
+IS	57	0	0	0	0
+IS	58	0	0	0	0
+IS	59	0	0	0	0
+IS	60	0	0	0	0
+IS	61	0	0	0	0
+IS	62	0	0	0	0
+IS	63	0	0	0	0
+IS	64	0	0	0	0
+IS	65	0	0	0	0
+IS	66	0	0	0	0
+IS	67	0	0	0	0
+IS	68	0	0	0	0
+IS	69	0	0	0	0
+IS	70	0	0	0	0
+IS	71	0	0	0	0
+IS	72	0	0	0	0
+IS	73	0	0	0	0
+IS	74	0	0	0	0
+IS	75	0	0	0	0
+IS	76	0	0	0	0
+IS	77	0	0	0	0
+IS	78	0	0	0	0
+IS	79	0	0	0	0
+IS	80	0	0	0	0
+IS	81	0	0	0	0
+IS	82	0	0	0	0
+IS	83	0	0	0	0
+IS	84	0	0	0	0
+IS	85	0	0	0	0
+IS	86	0	0	0	0
+IS	87	0	0	0	0
+IS	88	0	0	0	0
+IS	89	0	0	0	0
+IS	90	0	0	0	0
+IS	91	0	0	0	0
+IS	92	0	0	0	0
+IS	93	0	0	0	0
+IS	94	0	0	0	0
+IS	95	0	0	0	0
+IS	96	0	0	0	0
+IS	97	0	0	0	0
+IS	98	0	0	0	0
+IS	99	0	0	0	0
+IS	100	1	1	0	0
+# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
+RL	35	2
+# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
+FRL	35	1
+# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
+LRL	35	1
+# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
+# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
+# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
+COV	[1-1]	1	70
+# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
+GCD	0.0	100.000	0.000	0.000	0.000	0.000	0.000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/11.stats.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,166 @@
+# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
+# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
+CHK	cb2d2d82	bcd83869	62ec814e
+# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
+SN	raw total sequences:	26
+SN	filtered sequences:	0
+SN	sequences:	26
+SN	is sorted:	1
+SN	1st fragments:	14
+SN	last fragments:	12
+SN	reads mapped:	26
+SN	reads mapped and paired:	26	# paired-end technology bit set + both mates mapped
+SN	reads unmapped:	0
+SN	reads properly paired:	24	# proper-pair bit set
+SN	reads paired:	26	# paired-end technology bit set
+SN	reads duplicated:	0	# PCR or optical duplicate bit set
+SN	reads MQ0:	1	# mapped and MQ=0
+SN	reads QC failed:	0
+SN	non-primary alignments:	0
+SN	total length:	260	# ignores clipping
+SN	total first fragment length:	140	# ignores clipping
+SN	total last fragment length:	120	# ignores clipping
+SN	bases mapped:	260	# ignores clipping
+SN	bases mapped (cigar):	206	# more accurate
+SN	bases trimmed:	0
+SN	bases duplicated:	0
+SN	mismatches:	0	# from NM fields
+SN	error rate:	0.000000e+00	# mismatches / bases mapped (cigar)
+SN	average length:	10
+SN	average first fragment length:	10
+SN	average last fragment length:	10
+SN	maximum length:	10
+SN	maximum first fragment length:	10
+SN	maximum last fragment length:	10
+SN	average quality:	13.1
+SN	insert size average:	34.0
+SN	insert size standard deviation:	0.0
+SN	inward oriented pairs:	12
+SN	outward oriented pairs:	0
+SN	pairs with other orientation:	0
+SN	pairs on different chromosomes:	1
+SN	percentage of properly paired reads (%):	92.3
+SN	bases inside the target:	42
+SN	percentage of target genome with coverage > 0 (%):	100.00
+# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+FFQ	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	2	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	3	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	4	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	5	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	6	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	7	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	8	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	9	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	10	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+LFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	3	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	4	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	5	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	6	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	7	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	8	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	9	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	10	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
+GCF	19.85	0
+GCF	44.72	1
+GCF	54.77	4
+GCF	64.82	2
+GCF	74.87	4
+GCF	84.92	3
+# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
+GCL	19.85	0
+GCL	44.72	2
+GCL	59.80	3
+GCL	74.87	4
+# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+GCC	1	19.23	42.31	15.38	23.08	0.00	0.00
+GCC	2	19.23	19.23	46.15	15.38	0.00	0.00
+GCC	3	23.08	38.46	19.23	19.23	0.00	0.00
+GCC	4	23.08	23.08	38.46	15.38	0.00	0.00
+GCC	5	11.54	38.46	26.92	23.08	0.00	0.00
+GCC	6	23.08	23.08	34.62	19.23	0.00	0.00
+GCC	7	15.38	34.62	26.92	23.08	0.00	0.00
+GCC	8	26.92	23.08	38.46	11.54	0.00	0.00
+GCC	9	23.08	26.92	26.92	23.08	0.00	0.00
+GCC	10	23.08	23.08	38.46	15.38	0.00	0.00
+# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+FBC	1	21.43	42.86	21.43	14.29	0.00	0.00
+FBC	2	7.14	28.57	42.86	21.43	0.00	0.00
+FBC	3	28.57	35.71	21.43	14.29	0.00	0.00
+FBC	4	14.29	28.57	35.71	21.43	0.00	0.00
+FBC	5	14.29	35.71	35.71	14.29	0.00	0.00
+FBC	6	14.29	28.57	28.57	28.57	0.00	0.00
+FBC	7	14.29	28.57	35.71	21.43	0.00	0.00
+FBC	8	21.43	28.57	28.57	21.43	0.00	0.00
+FBC	9	21.43	21.43	35.71	21.43	0.00	0.00
+FBC	10	14.29	28.57	35.71	21.43	0.00	0.00
+# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+LBC	1	16.67	41.67	8.33	33.33	0.00	0.00
+LBC	2	33.33	8.33	50.00	8.33	0.00	0.00
+LBC	3	16.67	41.67	16.67	25.00	0.00	0.00
+LBC	4	33.33	16.67	41.67	8.33	0.00	0.00
+LBC	5	8.33	41.67	16.67	33.33	0.00	0.00
+LBC	6	33.33	16.67	41.67	8.33	0.00	0.00
+LBC	7	16.67	41.67	16.67	25.00	0.00	0.00
+LBC	8	33.33	16.67	50.00	0.00	0.00	0.00
+LBC	9	25.00	33.33	16.67	25.00	0.00	0.00
+LBC	10	33.33	16.67	41.67	8.33	0.00	0.00
+# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
+IS	0	0	0	0	0
+IS	1	0	0	0	0
+IS	2	0	0	0	0
+IS	3	0	0	0	0
+IS	4	0	0	0	0
+IS	5	0	0	0	0
+IS	6	0	0	0	0
+IS	7	0	0	0	0
+IS	8	0	0	0	0
+IS	9	0	0	0	0
+IS	10	0	0	0	0
+IS	11	0	0	0	0
+IS	12	0	0	0	0
+IS	13	0	0	0	0
+IS	14	0	0	0	0
+IS	15	0	0	0	0
+IS	16	0	0	0	0
+IS	17	0	0	0	0
+IS	18	0	0	0	0
+IS	19	0	0	0	0
+IS	20	0	0	0	0
+IS	21	0	0	0	0
+IS	22	0	0	0	0
+IS	23	0	0	0	0
+IS	24	0	0	0	0
+IS	25	0	0	0	0
+IS	26	0	0	0	0
+IS	27	0	0	0	0
+IS	28	0	0	0	0
+IS	29	0	0	0	0
+IS	30	0	0	0	0
+IS	31	0	0	0	0
+IS	32	0	0	0	0
+IS	33	0	0	0	0
+IS	34	12	12	0	0
+# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
+RL	10	26
+# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
+FRL	10	14
+# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
+LRL	10	12
+# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
+# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
+# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
+COV	[1-1]	1	1
+COV	[2-2]	2	1
+COV	[3-3]	3	2
+COV	[4-4]	4	2
+COV	[5-5]	5	23
+COV	[6-6]	6	13
+# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
+GCD	0.0	100.000	0.000	0.000	0.000	0.000	0.000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/11.stats.g4.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,166 @@
+# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
+# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
+CHK	cb2d2d82	bcd83869	62ec814e
+# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
+SN	raw total sequences:	26
+SN	filtered sequences:	0
+SN	sequences:	26
+SN	is sorted:	1
+SN	1st fragments:	14
+SN	last fragments:	12
+SN	reads mapped:	26
+SN	reads mapped and paired:	26	# paired-end technology bit set + both mates mapped
+SN	reads unmapped:	0
+SN	reads properly paired:	24	# proper-pair bit set
+SN	reads paired:	26	# paired-end technology bit set
+SN	reads duplicated:	0	# PCR or optical duplicate bit set
+SN	reads MQ0:	1	# mapped and MQ=0
+SN	reads QC failed:	0
+SN	non-primary alignments:	0
+SN	total length:	260	# ignores clipping
+SN	total first fragment length:	140	# ignores clipping
+SN	total last fragment length:	120	# ignores clipping
+SN	bases mapped:	260	# ignores clipping
+SN	bases mapped (cigar):	206	# more accurate
+SN	bases trimmed:	0
+SN	bases duplicated:	0
+SN	mismatches:	0	# from NM fields
+SN	error rate:	0.000000e+00	# mismatches / bases mapped (cigar)
+SN	average length:	10
+SN	average first fragment length:	10
+SN	average last fragment length:	10
+SN	maximum length:	10
+SN	maximum first fragment length:	10
+SN	maximum last fragment length:	10
+SN	average quality:	13.1
+SN	insert size average:	34.0
+SN	insert size standard deviation:	0.0
+SN	inward oriented pairs:	12
+SN	outward oriented pairs:	0
+SN	pairs with other orientation:	0
+SN	pairs on different chromosomes:	1
+SN	percentage of properly paired reads (%):	92.3
+SN	bases inside the target:	42
+SN	percentage of target genome with coverage > 4 (%):	85.71
+# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+FFQ	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	2	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	3	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	4	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	5	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	6	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	7	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	8	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	9	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+FFQ	10	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
+# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+LFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	3	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	4	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	5	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	6	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	7	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	8	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	9	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+LFQ	10	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0
+# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
+GCF	19.85	0
+GCF	44.72	1
+GCF	54.77	4
+GCF	64.82	2
+GCF	74.87	4
+GCF	84.92	3
+# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
+GCL	19.85	0
+GCL	44.72	2
+GCL	59.80	3
+GCL	74.87	4
+# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+GCC	1	19.23	42.31	15.38	23.08	0.00	0.00
+GCC	2	19.23	19.23	46.15	15.38	0.00	0.00
+GCC	3	23.08	38.46	19.23	19.23	0.00	0.00
+GCC	4	23.08	23.08	38.46	15.38	0.00	0.00
+GCC	5	11.54	38.46	26.92	23.08	0.00	0.00
+GCC	6	23.08	23.08	34.62	19.23	0.00	0.00
+GCC	7	15.38	34.62	26.92	23.08	0.00	0.00
+GCC	8	26.92	23.08	38.46	11.54	0.00	0.00
+GCC	9	23.08	26.92	26.92	23.08	0.00	0.00
+GCC	10	23.08	23.08	38.46	15.38	0.00	0.00
+# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+FBC	1	21.43	42.86	21.43	14.29	0.00	0.00
+FBC	2	7.14	28.57	42.86	21.43	0.00	0.00
+FBC	3	28.57	35.71	21.43	14.29	0.00	0.00
+FBC	4	14.29	28.57	35.71	21.43	0.00	0.00
+FBC	5	14.29	35.71	35.71	14.29	0.00	0.00
+FBC	6	14.29	28.57	28.57	28.57	0.00	0.00
+FBC	7	14.29	28.57	35.71	21.43	0.00	0.00
+FBC	8	21.43	28.57	28.57	21.43	0.00	0.00
+FBC	9	21.43	21.43	35.71	21.43	0.00	0.00
+FBC	10	14.29	28.57	35.71	21.43	0.00	0.00
+# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+LBC	1	16.67	41.67	8.33	33.33	0.00	0.00
+LBC	2	33.33	8.33	50.00	8.33	0.00	0.00
+LBC	3	16.67	41.67	16.67	25.00	0.00	0.00
+LBC	4	33.33	16.67	41.67	8.33	0.00	0.00
+LBC	5	8.33	41.67	16.67	33.33	0.00	0.00
+LBC	6	33.33	16.67	41.67	8.33	0.00	0.00
+LBC	7	16.67	41.67	16.67	25.00	0.00	0.00
+LBC	8	33.33	16.67	50.00	0.00	0.00	0.00
+LBC	9	25.00	33.33	16.67	25.00	0.00	0.00
+LBC	10	33.33	16.67	41.67	8.33	0.00	0.00
+# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
+IS	0	0	0	0	0
+IS	1	0	0	0	0
+IS	2	0	0	0	0
+IS	3	0	0	0	0
+IS	4	0	0	0	0
+IS	5	0	0	0	0
+IS	6	0	0	0	0
+IS	7	0	0	0	0
+IS	8	0	0	0	0
+IS	9	0	0	0	0
+IS	10	0	0	0	0
+IS	11	0	0	0	0
+IS	12	0	0	0	0
+IS	13	0	0	0	0
+IS	14	0	0	0	0
+IS	15	0	0	0	0
+IS	16	0	0	0	0
+IS	17	0	0	0	0
+IS	18	0	0	0	0
+IS	19	0	0	0	0
+IS	20	0	0	0	0
+IS	21	0	0	0	0
+IS	22	0	0	0	0
+IS	23	0	0	0	0
+IS	24	0	0	0	0
+IS	25	0	0	0	0
+IS	26	0	0	0	0
+IS	27	0	0	0	0
+IS	28	0	0	0	0
+IS	29	0	0	0	0
+IS	30	0	0	0	0
+IS	31	0	0	0	0
+IS	32	0	0	0	0
+IS	33	0	0	0	0
+IS	34	12	12	0	0
+# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
+RL	10	26
+# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
+FRL	10	14
+# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
+LRL	10	12
+# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
+# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
+# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
+COV	[1-1]	1	1
+COV	[2-2]	2	1
+COV	[3-3]	3	2
+COV	[4-4]	4	2
+COV	[5-5]	5	23
+COV	[6-6]	6	13
+# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
+GCD	0.0	100.000	0.000	0.000	0.000	0.000	0.000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/11.stats.targets	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,24 @@
+# The MIT License
+# 
+# Copyright (c) 2014 Genome Research Ltd.
+# 
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+# 
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+# 
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+ref1	10 24
+ref1	30 46
+ref1	39 56
Binary file samtools_stats/test-data/11_target.bam has changed
Binary file samtools_stats/test-data/11_target.bam.bai has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/11_target.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,59 @@
+@HD	VN:1.4	SO:coordinate
+@RG	ID:s1_a_1	LB:1	SM:s1
+@RG	ID:grp1	DS:Group 1	LB:Library 1	SM:Sample
+@RG	ID:grp2	DS:Group 2	LB:Library 2	SM:Sample
+@RG	ID:grp3	DS:Group 3	SM:Sample
+@PG	ID:prog1	PN:emacs	CL:emacs	VN:23.1.1
+@CO	The MIT License
+@CO	
+@CO	Copyright (c) 2014 Genome Research Ltd.
+@CO	
+@CO	Permission is hereby granted, free of charge, to any person obtaining a copy
+@CO	of this software and associated documentation files (the "Software"), to deal
+@CO	in the Software without restriction, including without limitation the rights
+@CO	to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+@CO	copies of the Software, and to permit persons to whom the Software is
+@CO	furnished to do so, subject to the following conditions:
+@CO	
+@CO	The above copyright notice and this permission notice shall be included in
+@CO	all copies or substantial portions of the Software.
+@CO	
+@CO	THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+@CO	IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+@CO	FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+@CO	AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+@CO	LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+@CO	OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+@CO	THE SOFTWARE.
+@SQ	SN:alpha	LN:100
+@SQ	SN:ref1	LN:56	M5:08c04d512d4797d9ba2a156c1daba468
+@SQ	SN:ref2	LN:60	M5:7c35feac7036c1cdef3bee0cc4b21437
+@SQ	SN:ref3_unused	LN:70	M5:5fdd18c2c6ecac4838996d029bf395b5
+r1	99	alpha	1	40	35M	=	66	100	TGGGGTGTCATAGTAATCCGGTTGGGAGTCCGAGG	*	NM:i:0	RG:Z:s1_a_1
+r1	147	alpha	66	40	35M	=	1	-100	TATCCAGAACTTTGCAGCCATATCTCCAAGACATG	*	NM:i:0	RG:Z:s1_a_1
+ref1_grp1_p001	99	ref1	1	0	10M	=	25	34	CGAGCTCGGT	!!!!!!!!!!	RG:Z:grp1	BC:Z:ACGT	H0:i:1	aa:A:!	ab:A:~	fa:f:3.14159	za:Z:Hello world!	ha:H:DEADBEEF	ba:B:c,-128,0,127	bb:B:C,0,127,255	bc:B:s,-32768,0,32767	bd:B:S,0,32768,65535	be:B:i,-2147483648,0,2147483647	bf:B:I,0,2147483648,4294967295	bg:B:f,2.71828,6.626e-34,2.9979e+09	NM:i:0	MD:Z:10
+ref1_grp2_p001	99	ref1	3	1	10M	=	27	34	AGCTCGGTAC	""""""""""	RG:Z:grp2	BC:Z:TGCA	H0:i:1	aa:A:A	ab:A:Z	fa:f:6.67e-11	za:Z:!"$%^&*()	ha:H:CAFE	NM:i:0	MD:Z:10
+ref1_grp1_p002	99	ref1	5	2	10M	=	29	34	CTCGGTACCC	##########	RG:Z:grp1	BC:Z:AATTCCGG	H0:i:1	aa:A:a	ab:A:z	fa:f:4.3597e-18	za:Z:Another string	ha:H:2000AD	NM:i:0	MD:Z:10
+ref1_grp2_p002	99	ref1	7	3	10M	=	31	34	CGGTACCCGG	$$$$$$$$$$	fa:f:6.022e+23	RG:Z:grp2	NM:i:0	MD:Z:10
+ref1_grp1_p003	99	ref1	9	4	10M	=	33	34	GTACCCGGGG	%%%%%%%%%%	fa:f:1.66e-27	RG:Z:grp1	NM:i:0	MD:Z:10
+ref1_grp2_p003	99	ref1	11	5	10M	=	35	34	ACCCGGGGAT	&&&&&&&&&&	RG:Z:grp2	ia:i:4294967295	NM:i:0	MD:Z:10
+ref1_grp1_p004	99	ref1	13	6	10M	=	37	34	CCGGGGATCC	''''''''''	fa:f:1.38e-23	za:Z:xRG:Z:grp2	RG:Z:grp1	NM:i:0	MD:Z:10
+ref1_grp2_p004	99	ref1	15	7	10M	=	39	34	GGGGATCCTC	((((((((((	RG:Z:grp2	ia:i:-2147483648	NM:i:0	MD:Z:10
+ref1_grp1_p005	99	ref1	17	8	10M	=	41	34	GGATCCTCTA	))))))))))	RG:Z:grp1	ia:i:40000	NM:i:0	MD:Z:10
+ref1_grp2_p005	99	ref1	19	9	10M	=	43	34	ATCCTCTAGA	**********	RG:Z:grp2	ia:i:-1000	NM:i:0	MD:Z:10
+ref1_grp1_p006	99	ref1	21	10	10M	=	45	34	CCTCTAGAGT	++++++++++	RG:Z:grp1	ia:i:255	NM:i:0	MD:Z:10
+ref1_grp2_p006	99	ref1	23	11	10M	=	47	34	TCTAGAGTCG	,,,,,,,,,,	RG:Z:grp2	ia:i:-1	NM:i:0	MD:Z:10
+ref1_grp1_p001	147	ref1	25	12	10M	=	1	-34	TAGAGTCGAC	----------	RG:Z:grp1	NM:i:0	MD:Z:10
+ref1_grp2_p001	147	ref1	27	13	10M	=	3	-34	GAGTCGACCT	..........	RG:Z:grp2	NM:i:0	MD:Z:10
+ref1_grp1_p002	147	ref1	29	14	10M	=	5	-34	GTCGACCTGC	//////////	RG:Z:grp1	NM:i:0	MD:Z:10
+ref1_grp2_p002	147	ref1	31	15	10M	=	7	-34	CGACCTGCAG	0000000000	RG:Z:grp2	NM:i:0	MD:Z:10
+ref1_grp1_p003	147	ref1	33	16	10M	=	9	-34	ACCTGCAGGC	1111111111	RG:Z:grp1	NM:i:0	MD:Z:10
+ref1_grp2_p003	147	ref1	35	17	10M	=	11	-34	CTGCAGGCAT	2222222222	RG:Z:grp2	NM:i:0	MD:Z:10
+ref12_grp1_p001	97	ref1	36	50	10M	ref2	2	0	TGCAGGCATG	AAAAAAAAAA	RG:Z:grp1	NM:i:0	MD:Z:10
+ref1_grp1_p004	147	ref1	37	18	10M	=	13	-34	GCAGGCATGC	3333333333	RG:Z:grp1	NM:i:0	MD:Z:10
+ref1_grp2_p004	147	ref1	39	19	10M	=	15	-34	AGGCATGCAA	4444444444	RG:Z:grp2	NM:i:0	MD:Z:10
+ref1_grp1_p005	147	ref1	41	20	10M	=	17	-34	GCATGCAAGC	5555555555	RG:Z:grp1	NM:i:0	MD:Z:10
+ref1_grp2_p005	147	ref1	43	21	10M	=	19	-34	ATGCAAGCTT	6666666666	RG:Z:grp2	NM:i:0	MD:Z:10
+ref1_grp1_p006	147	ref1	45	22	10M	=	21	-34	GCAAGCTTGA	7777777777	RG:Z:grp1	NM:i:0	MD:Z:10
+ref12_grp2_p001	97	ref1	46	50	10M	ref2	12	0	CAAGCTTGAG	AAAAAAAAAA	RG:Z:grp2	NM:i:0	MD:Z:10
+ref1_grp2_p006	147	ref1	47	23	10M	=	23	-34	AAGCTTGAGT	8888888888	RG:Z:grp2	NM:i:0	MD:Z:10
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/12.2reads.nooverlap.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,740 @@
+# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
+# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
+CHK	5b31676a	b0edee94	471895da
+# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
+SN	raw total sequences:	2
+SN	filtered sequences:	0
+SN	sequences:	2
+SN	is sorted:	1
+SN	1st fragments:	1
+SN	last fragments:	1
+SN	reads mapped:	2
+SN	reads mapped and paired:	2	# paired-end technology bit set + both mates mapped
+SN	reads unmapped:	0
+SN	reads properly paired:	2	# proper-pair bit set
+SN	reads paired:	2	# paired-end technology bit set
+SN	reads duplicated:	0	# PCR or optical duplicate bit set
+SN	reads MQ0:	0	# mapped and MQ=0
+SN	reads QC failed:	0
+SN	non-primary alignments:	0
+SN	total length:	200	# ignores clipping
+SN	total first fragment length:	100	# ignores clipping
+SN	total last fragment length:	100	# ignores clipping
+SN	bases mapped:	200	# ignores clipping
+SN	bases mapped (cigar):	168	# more accurate
+SN	bases trimmed:	0
+SN	bases duplicated:	0
+SN	mismatches:	6	# from NM fields
+SN	error rate:	3.571429e-02	# mismatches / bases mapped (cigar)
+SN	average length:	100
+SN	average first fragment length:	100
+SN	average last fragment length:	100
+SN	maximum length:	100
+SN	maximum first fragment length:	100
+SN	maximum last fragment length:	100
+SN	average quality:	36.2
+SN	insert size average:	165.0
+SN	insert size standard deviation:	0.0
+SN	inward oriented pairs:	1
+SN	outward oriented pairs:	0
+SN	pairs with other orientation:	0
+SN	pairs on different chromosomes:	0
+SN	percentage of properly paired reads (%):	100.0
+SN	bases inside the target:	166
+SN	percentage of target genome with coverage > 0 (%):	99.40
+# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+FFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
+FFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+FFQ	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+FFQ	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+FFQ	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	68	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	70	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	72	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	73	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	74	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	76	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	77	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	79	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	80	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	81	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	82	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	83	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	84	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	85	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	86	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	87	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	88	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
+FFQ	89	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	90	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	91	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	92	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	93	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	94	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	95	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	96	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	97	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	99	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	100	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+LFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
+LFQ	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
+LFQ	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
+LFQ	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
+LFQ	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+LFQ	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
+LFQ	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+LFQ	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+LFQ	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+LFQ	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+LFQ	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+LFQ	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+LFQ	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	68	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+LFQ	70	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	72	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	73	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	74	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	76	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	77	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	79	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	80	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	81	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	82	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	83	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	84	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	85	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	86	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	87	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	88	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	89	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	90	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	91	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
+LFQ	92	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	93	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	94	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	95	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	96	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	97	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	99	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	100	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
+GCF	17.34	0
+GCF	35.18	1
+# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
+GCL	21.36	0
+GCL	43.22	1
+# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+GCC	1	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	2	0.00	0.00	100.00	0.00	0.00	0.00
+GCC	3	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	4	0.00	0.00	100.00	0.00	0.00	0.00
+GCC	5	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	6	0.00	50.00	0.00	50.00	0.00	0.00
+GCC	7	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	8	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	9	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	10	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	11	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	12	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	13	0.00	0.00	100.00	0.00	0.00	0.00
+GCC	14	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	15	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	16	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	17	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	18	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	19	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	20	0.00	0.00	100.00	0.00	0.00	0.00
+GCC	21	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	22	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	23	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	24	0.00	0.00	100.00	0.00	0.00	0.00
+GCC	25	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	26	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	27	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	28	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	29	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	30	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	31	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	32	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	33	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	34	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	35	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	36	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	37	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	38	0.00	50.00	0.00	50.00	0.00	0.00
+GCC	39	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	40	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	41	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	42	0.00	50.00	0.00	50.00	0.00	0.00
+GCC	43	0.00	50.00	0.00	50.00	0.00	0.00
+GCC	44	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	45	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	46	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	47	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	48	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	49	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	50	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	51	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	52	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	53	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	54	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	55	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	56	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	57	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	58	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	59	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	60	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	61	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	62	0.00	0.00	100.00	0.00	0.00	0.00
+GCC	63	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	64	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	65	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	66	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	67	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	68	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	69	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	70	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	71	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	72	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	73	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	74	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	75	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	76	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	77	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	78	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	79	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	80	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	81	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	82	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	83	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	84	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	85	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	86	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	87	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	88	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	89	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	90	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	91	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	92	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	93	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	94	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	95	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	96	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	97	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	98	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	99	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	100	100.00	0.00	0.00	0.00	0.00	0.00
+# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+FBC	1	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	2	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	3	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	4	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	5	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	6	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	7	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	8	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	9	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	10	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	11	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	12	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	13	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	14	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	15	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	16	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	17	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	18	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	19	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	20	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	21	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	22	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	23	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	24	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	25	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	26	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	27	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	28	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	29	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	30	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	31	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	32	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	33	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	34	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	35	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	36	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	37	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	38	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	39	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	40	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	41	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	42	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	43	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	44	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	45	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	46	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	47	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	48	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	49	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	50	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	51	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	52	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	53	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	54	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	55	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	56	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	57	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	58	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	59	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	60	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	61	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	62	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	63	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	64	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	65	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	66	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	67	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	68	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	69	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	70	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	71	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	72	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	73	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	74	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	75	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	76	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	77	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	78	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	79	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	80	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	81	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	82	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	83	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	84	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	85	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	86	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	87	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	88	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	89	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	90	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	91	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	92	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	93	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	94	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	95	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	96	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	97	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	98	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	99	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	100	100.00	0.00	0.00	0.00	0.00	0.00
+# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+LBC	1	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	2	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	3	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	4	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	5	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	6	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	7	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	8	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	9	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	10	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	11	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	12	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	13	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	14	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	15	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	16	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	17	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	18	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	19	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	20	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	21	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	22	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	23	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	24	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	25	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	26	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	27	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	28	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	29	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	30	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	31	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	32	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	33	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	34	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	35	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	36	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	37	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	38	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	39	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	40	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	41	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	42	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	43	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	44	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	45	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	46	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	47	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	48	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	49	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	50	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	51	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	52	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	53	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	54	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	55	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	56	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	57	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	58	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	59	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	60	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	61	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	62	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	63	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	64	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	65	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	66	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	67	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	68	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	69	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	70	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	71	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	72	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	73	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	74	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	75	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	76	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	77	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	78	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	79	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	80	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	81	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	82	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	83	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	84	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	85	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	86	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	87	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	88	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	89	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	90	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	91	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	92	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	93	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	94	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	95	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	96	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	97	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	98	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	99	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	100	100.00	0.00	0.00	0.00	0.00	0.00
+# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
+IS	0	0	0	0	0
+IS	1	0	0	0	0
+IS	2	0	0	0	0
+IS	3	0	0	0	0
+IS	4	0	0	0	0
+IS	5	0	0	0	0
+IS	6	0	0	0	0
+IS	7	0	0	0	0
+IS	8	0	0	0	0
+IS	9	0	0	0	0
+IS	10	0	0	0	0
+IS	11	0	0	0	0
+IS	12	0	0	0	0
+IS	13	0	0	0	0
+IS	14	0	0	0	0
+IS	15	0	0	0	0
+IS	16	0	0	0	0
+IS	17	0	0	0	0
+IS	18	0	0	0	0
+IS	19	0	0	0	0
+IS	20	0	0	0	0
+IS	21	0	0	0	0
+IS	22	0	0	0	0
+IS	23	0	0	0	0
+IS	24	0	0	0	0
+IS	25	0	0	0	0
+IS	26	0	0	0	0
+IS	27	0	0	0	0
+IS	28	0	0	0	0
+IS	29	0	0	0	0
+IS	30	0	0	0	0
+IS	31	0	0	0	0
+IS	32	0	0	0	0
+IS	33	0	0	0	0
+IS	34	0	0	0	0
+IS	35	0	0	0	0
+IS	36	0	0	0	0
+IS	37	0	0	0	0
+IS	38	0	0	0	0
+IS	39	0	0	0	0
+IS	40	0	0	0	0
+IS	41	0	0	0	0
+IS	42	0	0	0	0
+IS	43	0	0	0	0
+IS	44	0	0	0	0
+IS	45	0	0	0	0
+IS	46	0	0	0	0
+IS	47	0	0	0	0
+IS	48	0	0	0	0
+IS	49	0	0	0	0
+IS	50	0	0	0	0
+IS	51	0	0	0	0
+IS	52	0	0	0	0
+IS	53	0	0	0	0
+IS	54	0	0	0	0
+IS	55	0	0	0	0
+IS	56	0	0	0	0
+IS	57	0	0	0	0
+IS	58	0	0	0	0
+IS	59	0	0	0	0
+IS	60	0	0	0	0
+IS	61	0	0	0	0
+IS	62	0	0	0	0
+IS	63	0	0	0	0
+IS	64	0	0	0	0
+IS	65	0	0	0	0
+IS	66	0	0	0	0
+IS	67	0	0	0	0
+IS	68	0	0	0	0
+IS	69	0	0	0	0
+IS	70	0	0	0	0
+IS	71	0	0	0	0
+IS	72	0	0	0	0
+IS	73	0	0	0	0
+IS	74	0	0	0	0
+IS	75	0	0	0	0
+IS	76	0	0	0	0
+IS	77	0	0	0	0
+IS	78	0	0	0	0
+IS	79	0	0	0	0
+IS	80	0	0	0	0
+IS	81	0	0	0	0
+IS	82	0	0	0	0
+IS	83	0	0	0	0
+IS	84	0	0	0	0
+IS	85	0	0	0	0
+IS	86	0	0	0	0
+IS	87	0	0	0	0
+IS	88	0	0	0	0
+IS	89	0	0	0	0
+IS	90	0	0	0	0
+IS	91	0	0	0	0
+IS	92	0	0	0	0
+IS	93	0	0	0	0
+IS	94	0	0	0	0
+IS	95	0	0	0	0
+IS	96	0	0	0	0
+IS	97	0	0	0	0
+IS	98	0	0	0	0
+IS	99	0	0	0	0
+IS	100	0	0	0	0
+IS	101	0	0	0	0
+IS	102	0	0	0	0
+IS	103	0	0	0	0
+IS	104	0	0	0	0
+IS	105	0	0	0	0
+IS	106	0	0	0	0
+IS	107	0	0	0	0
+IS	108	0	0	0	0
+IS	109	0	0	0	0
+IS	110	0	0	0	0
+IS	111	0	0	0	0
+IS	112	0	0	0	0
+IS	113	0	0	0	0
+IS	114	0	0	0	0
+IS	115	0	0	0	0
+IS	116	0	0	0	0
+IS	117	0	0	0	0
+IS	118	0	0	0	0
+IS	119	0	0	0	0
+IS	120	0	0	0	0
+IS	121	0	0	0	0
+IS	122	0	0	0	0
+IS	123	0	0	0	0
+IS	124	0	0	0	0
+IS	125	0	0	0	0
+IS	126	0	0	0	0
+IS	127	0	0	0	0
+IS	128	0	0	0	0
+IS	129	0	0	0	0
+IS	130	0	0	0	0
+IS	131	0	0	0	0
+IS	132	0	0	0	0
+IS	133	0	0	0	0
+IS	134	0	0	0	0
+IS	135	0	0	0	0
+IS	136	0	0	0	0
+IS	137	0	0	0	0
+IS	138	0	0	0	0
+IS	139	0	0	0	0
+IS	140	0	0	0	0
+IS	141	0	0	0	0
+IS	142	0	0	0	0
+IS	143	0	0	0	0
+IS	144	0	0	0	0
+IS	145	0	0	0	0
+IS	146	0	0	0	0
+IS	147	0	0	0	0
+IS	148	0	0	0	0
+IS	149	0	0	0	0
+IS	150	0	0	0	0
+IS	151	0	0	0	0
+IS	152	0	0	0	0
+IS	153	0	0	0	0
+IS	154	0	0	0	0
+IS	155	0	0	0	0
+IS	156	0	0	0	0
+IS	157	0	0	0	0
+IS	158	0	0	0	0
+IS	159	0	0	0	0
+IS	160	0	0	0	0
+IS	161	0	0	0	0
+IS	162	0	0	0	0
+IS	163	0	0	0	0
+IS	164	0	0	0	0
+IS	165	1	1	0	0
+# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
+RL	100	2
+# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
+FRL	100	1
+# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
+LRL	100	1
+# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
+ID	2	0	1
+ID	3	1	0
+# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
+IC	90	1	0	0	0
+IC	97	0	0	1	0
+# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
+COV	[1-1]	1	165
+# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
+GCD	0.0	100.000	0.000	0.000	0.000	0.000	0.000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/12.2reads.overlap.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,741 @@
+# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
+# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
+CHK	5b31676a	b0edee94	471895da
+# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
+SN	raw total sequences:	2
+SN	filtered sequences:	0
+SN	sequences:	2
+SN	is sorted:	1
+SN	1st fragments:	1
+SN	last fragments:	1
+SN	reads mapped:	2
+SN	reads mapped and paired:	2	# paired-end technology bit set + both mates mapped
+SN	reads unmapped:	0
+SN	reads properly paired:	2	# proper-pair bit set
+SN	reads paired:	2	# paired-end technology bit set
+SN	reads duplicated:	0	# PCR or optical duplicate bit set
+SN	reads MQ0:	0	# mapped and MQ=0
+SN	reads QC failed:	0
+SN	non-primary alignments:	0
+SN	total length:	200	# ignores clipping
+SN	total first fragment length:	100	# ignores clipping
+SN	total last fragment length:	100	# ignores clipping
+SN	bases mapped:	200	# ignores clipping
+SN	bases mapped (cigar):	199	# more accurate
+SN	bases trimmed:	0
+SN	bases duplicated:	0
+SN	mismatches:	6	# from NM fields
+SN	error rate:	3.015075e-02	# mismatches / bases mapped (cigar)
+SN	average length:	100
+SN	average first fragment length:	100
+SN	average last fragment length:	100
+SN	maximum length:	100
+SN	maximum first fragment length:	100
+SN	maximum last fragment length:	100
+SN	average quality:	36.2
+SN	insert size average:	165.0
+SN	insert size standard deviation:	0.0
+SN	inward oriented pairs:	1
+SN	outward oriented pairs:	0
+SN	pairs with other orientation:	0
+SN	pairs on different chromosomes:	0
+SN	percentage of properly paired reads (%):	100.0
+SN	bases inside the target:	166
+SN	percentage of target genome with coverage > 0 (%):	99.40
+# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+FFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
+FFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+FFQ	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+FFQ	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+FFQ	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	68	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	70	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	72	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	73	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	74	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	76	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	77	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	79	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	80	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	81	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	82	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	83	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	84	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	85	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	86	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	87	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	88	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
+FFQ	89	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	90	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	91	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	92	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	93	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	94	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	95	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	96	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	97	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	99	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	100	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+LFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
+LFQ	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
+LFQ	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
+LFQ	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
+LFQ	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+LFQ	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
+LFQ	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+LFQ	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+LFQ	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+LFQ	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+LFQ	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+LFQ	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+LFQ	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	68	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+LFQ	70	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	72	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	73	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	74	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	76	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	77	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	79	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	80	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	81	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	82	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	83	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	84	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	85	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	86	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	87	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	88	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	89	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	90	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	91	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
+LFQ	92	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	93	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	94	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	95	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	96	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	97	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	99	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	100	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
+GCF	17.34	0
+GCF	35.18	1
+# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
+GCL	21.36	0
+GCL	43.22	1
+# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+GCC	1	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	2	0.00	0.00	100.00	0.00	0.00	0.00
+GCC	3	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	4	0.00	0.00	100.00	0.00	0.00	0.00
+GCC	5	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	6	0.00	50.00	0.00	50.00	0.00	0.00
+GCC	7	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	8	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	9	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	10	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	11	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	12	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	13	0.00	0.00	100.00	0.00	0.00	0.00
+GCC	14	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	15	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	16	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	17	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	18	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	19	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	20	0.00	0.00	100.00	0.00	0.00	0.00
+GCC	21	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	22	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	23	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	24	0.00	0.00	100.00	0.00	0.00	0.00
+GCC	25	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	26	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	27	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	28	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	29	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	30	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	31	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	32	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	33	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	34	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	35	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	36	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	37	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	38	0.00	50.00	0.00	50.00	0.00	0.00
+GCC	39	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	40	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	41	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	42	0.00	50.00	0.00	50.00	0.00	0.00
+GCC	43	0.00	50.00	0.00	50.00	0.00	0.00
+GCC	44	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	45	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	46	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	47	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	48	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	49	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	50	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	51	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	52	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	53	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	54	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	55	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	56	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	57	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	58	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	59	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	60	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	61	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	62	0.00	0.00	100.00	0.00	0.00	0.00
+GCC	63	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	64	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	65	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	66	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	67	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	68	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	69	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	70	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	71	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	72	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	73	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	74	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	75	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	76	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	77	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	78	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	79	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	80	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	81	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	82	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	83	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	84	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	85	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	86	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	87	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	88	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	89	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	90	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	91	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	92	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	93	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	94	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	95	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	96	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	97	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	98	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	99	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	100	100.00	0.00	0.00	0.00	0.00	0.00
+# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+FBC	1	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	2	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	3	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	4	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	5	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	6	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	7	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	8	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	9	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	10	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	11	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	12	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	13	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	14	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	15	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	16	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	17	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	18	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	19	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	20	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	21	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	22	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	23	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	24	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	25	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	26	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	27	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	28	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	29	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	30	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	31	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	32	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	33	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	34	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	35	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	36	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	37	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	38	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	39	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	40	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	41	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	42	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	43	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	44	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	45	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	46	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	47	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	48	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	49	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	50	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	51	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	52	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	53	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	54	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	55	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	56	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	57	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	58	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	59	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	60	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	61	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	62	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	63	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	64	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	65	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	66	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	67	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	68	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	69	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	70	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	71	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	72	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	73	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	74	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	75	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	76	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	77	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	78	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	79	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	80	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	81	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	82	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	83	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	84	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	85	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	86	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	87	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	88	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	89	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	90	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	91	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	92	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	93	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	94	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	95	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	96	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	97	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	98	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	99	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	100	100.00	0.00	0.00	0.00	0.00	0.00
+# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+LBC	1	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	2	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	3	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	4	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	5	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	6	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	7	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	8	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	9	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	10	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	11	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	12	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	13	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	14	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	15	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	16	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	17	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	18	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	19	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	20	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	21	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	22	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	23	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	24	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	25	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	26	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	27	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	28	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	29	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	30	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	31	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	32	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	33	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	34	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	35	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	36	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	37	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	38	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	39	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	40	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	41	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	42	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	43	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	44	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	45	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	46	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	47	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	48	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	49	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	50	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	51	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	52	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	53	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	54	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	55	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	56	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	57	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	58	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	59	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	60	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	61	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	62	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	63	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	64	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	65	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	66	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	67	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	68	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	69	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	70	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	71	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	72	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	73	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	74	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	75	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	76	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	77	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	78	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	79	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	80	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	81	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	82	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	83	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	84	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	85	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	86	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	87	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	88	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	89	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	90	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	91	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	92	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	93	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	94	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	95	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	96	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	97	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	98	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	99	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	100	100.00	0.00	0.00	0.00	0.00	0.00
+# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
+IS	0	0	0	0	0
+IS	1	0	0	0	0
+IS	2	0	0	0	0
+IS	3	0	0	0	0
+IS	4	0	0	0	0
+IS	5	0	0	0	0
+IS	6	0	0	0	0
+IS	7	0	0	0	0
+IS	8	0	0	0	0
+IS	9	0	0	0	0
+IS	10	0	0	0	0
+IS	11	0	0	0	0
+IS	12	0	0	0	0
+IS	13	0	0	0	0
+IS	14	0	0	0	0
+IS	15	0	0	0	0
+IS	16	0	0	0	0
+IS	17	0	0	0	0
+IS	18	0	0	0	0
+IS	19	0	0	0	0
+IS	20	0	0	0	0
+IS	21	0	0	0	0
+IS	22	0	0	0	0
+IS	23	0	0	0	0
+IS	24	0	0	0	0
+IS	25	0	0	0	0
+IS	26	0	0	0	0
+IS	27	0	0	0	0
+IS	28	0	0	0	0
+IS	29	0	0	0	0
+IS	30	0	0	0	0
+IS	31	0	0	0	0
+IS	32	0	0	0	0
+IS	33	0	0	0	0
+IS	34	0	0	0	0
+IS	35	0	0	0	0
+IS	36	0	0	0	0
+IS	37	0	0	0	0
+IS	38	0	0	0	0
+IS	39	0	0	0	0
+IS	40	0	0	0	0
+IS	41	0	0	0	0
+IS	42	0	0	0	0
+IS	43	0	0	0	0
+IS	44	0	0	0	0
+IS	45	0	0	0	0
+IS	46	0	0	0	0
+IS	47	0	0	0	0
+IS	48	0	0	0	0
+IS	49	0	0	0	0
+IS	50	0	0	0	0
+IS	51	0	0	0	0
+IS	52	0	0	0	0
+IS	53	0	0	0	0
+IS	54	0	0	0	0
+IS	55	0	0	0	0
+IS	56	0	0	0	0
+IS	57	0	0	0	0
+IS	58	0	0	0	0
+IS	59	0	0	0	0
+IS	60	0	0	0	0
+IS	61	0	0	0	0
+IS	62	0	0	0	0
+IS	63	0	0	0	0
+IS	64	0	0	0	0
+IS	65	0	0	0	0
+IS	66	0	0	0	0
+IS	67	0	0	0	0
+IS	68	0	0	0	0
+IS	69	0	0	0	0
+IS	70	0	0	0	0
+IS	71	0	0	0	0
+IS	72	0	0	0	0
+IS	73	0	0	0	0
+IS	74	0	0	0	0
+IS	75	0	0	0	0
+IS	76	0	0	0	0
+IS	77	0	0	0	0
+IS	78	0	0	0	0
+IS	79	0	0	0	0
+IS	80	0	0	0	0
+IS	81	0	0	0	0
+IS	82	0	0	0	0
+IS	83	0	0	0	0
+IS	84	0	0	0	0
+IS	85	0	0	0	0
+IS	86	0	0	0	0
+IS	87	0	0	0	0
+IS	88	0	0	0	0
+IS	89	0	0	0	0
+IS	90	0	0	0	0
+IS	91	0	0	0	0
+IS	92	0	0	0	0
+IS	93	0	0	0	0
+IS	94	0	0	0	0
+IS	95	0	0	0	0
+IS	96	0	0	0	0
+IS	97	0	0	0	0
+IS	98	0	0	0	0
+IS	99	0	0	0	0
+IS	100	0	0	0	0
+IS	101	0	0	0	0
+IS	102	0	0	0	0
+IS	103	0	0	0	0
+IS	104	0	0	0	0
+IS	105	0	0	0	0
+IS	106	0	0	0	0
+IS	107	0	0	0	0
+IS	108	0	0	0	0
+IS	109	0	0	0	0
+IS	110	0	0	0	0
+IS	111	0	0	0	0
+IS	112	0	0	0	0
+IS	113	0	0	0	0
+IS	114	0	0	0	0
+IS	115	0	0	0	0
+IS	116	0	0	0	0
+IS	117	0	0	0	0
+IS	118	0	0	0	0
+IS	119	0	0	0	0
+IS	120	0	0	0	0
+IS	121	0	0	0	0
+IS	122	0	0	0	0
+IS	123	0	0	0	0
+IS	124	0	0	0	0
+IS	125	0	0	0	0
+IS	126	0	0	0	0
+IS	127	0	0	0	0
+IS	128	0	0	0	0
+IS	129	0	0	0	0
+IS	130	0	0	0	0
+IS	131	0	0	0	0
+IS	132	0	0	0	0
+IS	133	0	0	0	0
+IS	134	0	0	0	0
+IS	135	0	0	0	0
+IS	136	0	0	0	0
+IS	137	0	0	0	0
+IS	138	0	0	0	0
+IS	139	0	0	0	0
+IS	140	0	0	0	0
+IS	141	0	0	0	0
+IS	142	0	0	0	0
+IS	143	0	0	0	0
+IS	144	0	0	0	0
+IS	145	0	0	0	0
+IS	146	0	0	0	0
+IS	147	0	0	0	0
+IS	148	0	0	0	0
+IS	149	0	0	0	0
+IS	150	0	0	0	0
+IS	151	0	0	0	0
+IS	152	0	0	0	0
+IS	153	0	0	0	0
+IS	154	0	0	0	0
+IS	155	0	0	0	0
+IS	156	0	0	0	0
+IS	157	0	0	0	0
+IS	158	0	0	0	0
+IS	159	0	0	0	0
+IS	160	0	0	0	0
+IS	161	0	0	0	0
+IS	162	0	0	0	0
+IS	163	0	0	0	0
+IS	164	0	0	0	0
+IS	165	1	1	0	0
+# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
+RL	100	2
+# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
+FRL	100	1
+# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
+LRL	100	1
+# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
+ID	2	0	1
+ID	3	1	0
+# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
+IC	90	1	0	0	0
+IC	97	0	0	1	0
+# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
+COV	[1-1]	1	134
+COV	[2-2]	2	31
+# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
+GCD	0.0	100.000	0.000	0.000	0.000	0.000	0.000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/12.3reads.nooverlap.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,758 @@
+# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
+# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
+CHK	09f8b87f	140798ec	2b989f07
+# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
+SN	raw total sequences:	3
+SN	filtered sequences:	0
+SN	sequences:	3
+SN	is sorted:	1
+SN	1st fragments:	1
+SN	last fragments:	2
+SN	reads mapped:	3
+SN	reads mapped and paired:	3	# paired-end technology bit set + both mates mapped
+SN	reads unmapped:	0
+SN	reads properly paired:	3	# proper-pair bit set
+SN	reads paired:	3	# paired-end technology bit set
+SN	reads duplicated:	0	# PCR or optical duplicate bit set
+SN	reads MQ0:	0	# mapped and MQ=0
+SN	reads QC failed:	0
+SN	non-primary alignments:	0
+SN	total length:	300	# ignores clipping
+SN	total first fragment length:	100	# ignores clipping
+SN	total last fragment length:	200	# ignores clipping
+SN	bases mapped:	300	# ignores clipping
+SN	bases mapped (cigar):	280	# more accurate
+SN	bases trimmed:	0
+SN	bases duplicated:	0
+SN	mismatches:	11	# from NM fields
+SN	error rate:	3.928572e-02	# mismatches / bases mapped (cigar)
+SN	average length:	100
+SN	average first fragment length:	100
+SN	average last fragment length:	100
+SN	maximum length:	100
+SN	maximum first fragment length:	100
+SN	maximum last fragment length:	100
+SN	average quality:	33.3
+SN	insert size average:	180.0
+SN	insert size standard deviation:	0.0
+SN	inward oriented pairs:	1
+SN	outward oriented pairs:	0
+SN	pairs with other orientation:	0
+SN	pairs on different chromosomes:	0
+SN	percentage of properly paired reads (%):	100.0
+SN	bases inside the target:	180
+SN	percentage of target genome with coverage > 0 (%):	99.44
+# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+FFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
+FFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
+FFQ	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
+FFQ	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
+FFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
+FFQ	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	68	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	70	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	72	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	73	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	74	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	76	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	77	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+FFQ	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	79	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	80	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	81	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	82	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	83	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	84	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	85	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	86	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	87	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	88	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	89	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	90	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	91	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	92	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	93	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	94	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	95	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	96	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	97	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	99	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	100	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+LFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
+LFQ	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+LFQ	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
+LFQ	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
+LFQ	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
+LFQ	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0
+LFQ	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+LFQ	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
+LFQ	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
+LFQ	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
+LFQ	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
+LFQ	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
+LFQ	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
+LFQ	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+LFQ	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
+LFQ	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
+LFQ	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
+LFQ	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
+LFQ	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0
+LFQ	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
+LFQ	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0
+LFQ	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+LFQ	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
+LFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
+LFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
+LFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
+LFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
+LFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
+LFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
+LFQ	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0
+LFQ	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
+LFQ	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
+LFQ	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0
+LFQ	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
+LFQ	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+LFQ	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0
+LFQ	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
+LFQ	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0
+LFQ	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0
+LFQ	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0
+LFQ	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
+LFQ	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
+LFQ	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0
+LFQ	55	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
+LFQ	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
+LFQ	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	59	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	60	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
+LFQ	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0
+LFQ	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0
+LFQ	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0
+LFQ	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	68	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	70	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
+LFQ	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
+LFQ	72	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	73	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	74	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
+LFQ	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	76	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
+LFQ	77	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0
+LFQ	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	79	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	80	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0
+LFQ	81	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	82	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+LFQ	83	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	84	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	85	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	86	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	87	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+LFQ	88	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	89	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
+LFQ	90	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	91	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	92	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	93	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	94	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	95	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
+LFQ	96	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	97	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	99	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0
+LFQ	100	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
+# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
+GCF	25.38	0
+GCF	51.26	1
+# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
+GCL	24.87	0
+GCL	50.25	1
+GCL	51.26	0
+GCL	52.26	1
+# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+GCC	1	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	2	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	3	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	4	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	5	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	6	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	7	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	8	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	9	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	10	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	11	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	12	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	13	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	14	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	15	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	16	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	17	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	18	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	19	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	20	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	21	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	22	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	23	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	24	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	25	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	26	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	27	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	28	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	29	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	30	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	31	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	32	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	33	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	34	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	35	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	36	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	37	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	38	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	39	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	40	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	41	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	42	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	43	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	44	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	45	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	46	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	47	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	48	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	49	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	50	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	51	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	52	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	53	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	54	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	55	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	56	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	57	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	58	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	59	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	60	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	61	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	62	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	63	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	64	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	65	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	66	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	67	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	68	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	69	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	70	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	71	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	72	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	73	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	74	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	75	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	76	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	77	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	78	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	79	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	80	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	81	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	82	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	83	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	84	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	85	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	86	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	87	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	88	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	89	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	90	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	91	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	92	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	93	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	94	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	95	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	96	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	97	33.33	33.33	0.00	33.33	0.00	0.00
+GCC	98	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	99	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	100	0.00	0.00	0.00	100.00	0.00	0.00
+# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+FBC	1	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	2	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	3	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	4	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	5	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	6	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	7	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	8	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	9	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	10	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	11	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	12	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	13	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	14	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	15	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	16	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	17	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	18	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	19	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	20	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	21	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	22	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	23	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	24	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	25	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	26	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	27	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	28	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	29	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	30	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	31	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	32	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	33	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	34	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	35	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	36	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	37	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	38	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	39	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	40	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	41	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	42	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	43	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	44	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	45	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	46	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	47	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	48	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	49	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	50	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	51	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	52	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	53	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	54	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	55	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	56	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	57	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	58	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	59	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	60	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	61	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	62	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	63	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	64	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	65	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	66	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	67	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	68	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	69	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	70	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	71	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	72	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	73	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	74	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	75	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	76	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	77	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	78	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	79	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	80	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	81	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	82	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	83	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	84	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	85	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	86	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	87	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	88	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	89	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	90	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	91	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	92	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	93	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	94	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	95	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	96	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	97	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	98	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	99	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	100	0.00	0.00	0.00	100.00	0.00	0.00
+# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+LBC	1	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	2	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	3	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	4	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	5	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	6	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	7	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	8	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	9	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	10	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	11	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	12	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	13	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	14	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	15	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	16	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	17	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	18	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	19	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	20	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	21	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	22	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	23	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	24	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	25	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	26	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	27	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	28	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	29	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	30	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	31	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	32	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	33	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	34	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	35	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	36	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	37	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	38	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	39	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	40	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	41	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	42	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	43	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	44	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	45	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	46	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	47	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	48	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	49	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	50	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	51	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	52	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	53	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	54	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	55	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	56	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	57	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	58	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	59	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	60	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	61	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	62	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	63	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	64	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	65	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	66	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	67	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	68	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	69	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	70	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	71	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	72	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	73	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	74	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	75	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	76	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	77	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	78	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	79	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	80	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	81	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	82	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	83	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	84	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	85	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	86	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	87	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	88	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	89	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	90	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	91	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	92	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	93	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	94	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	95	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	96	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	97	50.00	0.00	0.00	50.00	0.00	0.00
+LBC	98	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	99	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	100	0.00	0.00	0.00	100.00	0.00	0.00
+# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
+IS	0	0	0	0	0
+IS	1	0	0	0	0
+IS	2	0	0	0	0
+IS	3	0	0	0	0
+IS	4	0	0	0	0
+IS	5	0	0	0	0
+IS	6	0	0	0	0
+IS	7	0	0	0	0
+IS	8	0	0	0	0
+IS	9	0	0	0	0
+IS	10	0	0	0	0
+IS	11	0	0	0	0
+IS	12	0	0	0	0
+IS	13	0	0	0	0
+IS	14	0	0	0	0
+IS	15	0	0	0	0
+IS	16	0	0	0	0
+IS	17	0	0	0	0
+IS	18	0	0	0	0
+IS	19	0	0	0	0
+IS	20	0	0	0	0
+IS	21	0	0	0	0
+IS	22	0	0	0	0
+IS	23	0	0	0	0
+IS	24	0	0	0	0
+IS	25	0	0	0	0
+IS	26	0	0	0	0
+IS	27	0	0	0	0
+IS	28	0	0	0	0
+IS	29	0	0	0	0
+IS	30	0	0	0	0
+IS	31	0	0	0	0
+IS	32	0	0	0	0
+IS	33	0	0	0	0
+IS	34	0	0	0	0
+IS	35	0	0	0	0
+IS	36	0	0	0	0
+IS	37	0	0	0	0
+IS	38	0	0	0	0
+IS	39	0	0	0	0
+IS	40	0	0	0	0
+IS	41	0	0	0	0
+IS	42	0	0	0	0
+IS	43	0	0	0	0
+IS	44	0	0	0	0
+IS	45	0	0	0	0
+IS	46	0	0	0	0
+IS	47	0	0	0	0
+IS	48	0	0	0	0
+IS	49	0	0	0	0
+IS	50	0	0	0	0
+IS	51	0	0	0	0
+IS	52	0	0	0	0
+IS	53	0	0	0	0
+IS	54	0	0	0	0
+IS	55	0	0	0	0
+IS	56	0	0	0	0
+IS	57	0	0	0	0
+IS	58	0	0	0	0
+IS	59	0	0	0	0
+IS	60	0	0	0	0
+IS	61	0	0	0	0
+IS	62	0	0	0	0
+IS	63	0	0	0	0
+IS	64	0	0	0	0
+IS	65	0	0	0	0
+IS	66	0	0	0	0
+IS	67	0	0	0	0
+IS	68	0	0	0	0
+IS	69	0	0	0	0
+IS	70	0	0	0	0
+IS	71	0	0	0	0
+IS	72	0	0	0	0
+IS	73	0	0	0	0
+IS	74	0	0	0	0
+IS	75	0	0	0	0
+IS	76	0	0	0	0
+IS	77	0	0	0	0
+IS	78	0	0	0	0
+IS	79	0	0	0	0
+IS	80	0	0	0	0
+IS	81	0	0	0	0
+IS	82	0	0	0	0
+IS	83	0	0	0	0
+IS	84	0	0	0	0
+IS	85	0	0	0	0
+IS	86	0	0	0	0
+IS	87	0	0	0	0
+IS	88	0	0	0	0
+IS	89	0	0	0	0
+IS	90	0	0	0	0
+IS	91	0	0	0	0
+IS	92	0	0	0	0
+IS	93	0	0	0	0
+IS	94	0	0	0	0
+IS	95	0	0	0	0
+IS	96	0	0	0	0
+IS	97	0	0	0	0
+IS	98	0	0	0	0
+IS	99	0	0	0	0
+IS	100	0	0	0	0
+IS	101	0	0	0	0
+IS	102	0	0	0	0
+IS	103	0	0	0	0
+IS	104	0	0	0	0
+IS	105	0	0	0	0
+IS	106	0	0	0	0
+IS	107	0	0	0	0
+IS	108	0	0	0	0
+IS	109	0	0	0	0
+IS	110	0	0	0	0
+IS	111	0	0	0	0
+IS	112	0	0	0	0
+IS	113	0	0	0	0
+IS	114	0	0	0	0
+IS	115	0	0	0	0
+IS	116	0	0	0	0
+IS	117	0	0	0	0
+IS	118	0	0	0	0
+IS	119	0	0	0	0
+IS	120	0	0	0	0
+IS	121	0	0	0	0
+IS	122	0	0	0	0
+IS	123	0	0	0	0
+IS	124	0	0	0	0
+IS	125	0	0	0	0
+IS	126	0	0	0	0
+IS	127	0	0	0	0
+IS	128	0	0	0	0
+IS	129	0	0	0	0
+IS	130	0	0	0	0
+IS	131	0	0	0	0
+IS	132	0	0	0	0
+IS	133	0	0	0	0
+IS	134	0	0	0	0
+IS	135	0	0	0	0
+IS	136	0	0	0	0
+IS	137	0	0	0	0
+IS	138	0	0	0	0
+IS	139	0	0	0	0
+IS	140	0	0	0	0
+IS	141	0	0	0	0
+IS	142	0	0	0	0
+IS	143	0	0	0	0
+IS	144	0	0	0	0
+IS	145	0	0	0	0
+IS	146	0	0	0	0
+IS	147	0	0	0	0
+IS	148	0	0	0	0
+IS	149	0	0	0	0
+IS	150	0	0	0	0
+IS	151	0	0	0	0
+IS	152	0	0	0	0
+IS	153	0	0	0	0
+IS	154	0	0	0	0
+IS	155	0	0	0	0
+IS	156	0	0	0	0
+IS	157	0	0	0	0
+IS	158	0	0	0	0
+IS	159	0	0	0	0
+IS	160	0	0	0	0
+IS	161	0	0	0	0
+IS	162	0	0	0	0
+IS	163	0	0	0	0
+IS	164	0	0	0	0
+IS	165	0	0	0	0
+IS	166	0	0	0	0
+IS	167	0	0	0	0
+IS	168	0	0	0	0
+IS	169	0	0	0	0
+IS	170	0	0	0	0
+IS	171	0	0	0	0
+IS	172	0	0	0	0
+IS	173	0	0	0	0
+IS	174	0	0	0	0
+IS	175	0	0	0	0
+IS	176	0	0	0	0
+IS	177	0	0	0	0
+IS	178	0	0	0	0
+IS	179	0	0	0	0
+IS	180	1	1	0	0
+# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
+RL	100	3
+# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
+FRL	100	1
+# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
+LRL	100	2
+# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
+ID	1	1	2
+# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
+IC	19	0	0	1	0
+IC	92	0	0	1	0
+IC	98	1	0	0	0
+# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
+COV	[1-1]	1	79
+COV	[2-2]	2	100
+# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
+GCD	0.0	100.000	0.000	0.000	0.000	0.000	0.000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/12.3reads.overlap.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,759 @@
+# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
+# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
+CHK	09f8b87f	140798ec	2b989f07
+# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
+SN	raw total sequences:	3
+SN	filtered sequences:	0
+SN	sequences:	3
+SN	is sorted:	1
+SN	1st fragments:	1
+SN	last fragments:	2
+SN	reads mapped:	3
+SN	reads mapped and paired:	3	# paired-end technology bit set + both mates mapped
+SN	reads unmapped:	0
+SN	reads properly paired:	3	# proper-pair bit set
+SN	reads paired:	3	# paired-end technology bit set
+SN	reads duplicated:	0	# PCR or optical duplicate bit set
+SN	reads MQ0:	0	# mapped and MQ=0
+SN	reads QC failed:	0
+SN	non-primary alignments:	0
+SN	total length:	300	# ignores clipping
+SN	total first fragment length:	100	# ignores clipping
+SN	total last fragment length:	200	# ignores clipping
+SN	bases mapped:	300	# ignores clipping
+SN	bases mapped (cigar):	300	# more accurate
+SN	bases trimmed:	0
+SN	bases duplicated:	0
+SN	mismatches:	11	# from NM fields
+SN	error rate:	3.666667e-02	# mismatches / bases mapped (cigar)
+SN	average length:	100
+SN	average first fragment length:	100
+SN	average last fragment length:	100
+SN	maximum length:	100
+SN	maximum first fragment length:	100
+SN	maximum last fragment length:	100
+SN	average quality:	33.3
+SN	insert size average:	180.0
+SN	insert size standard deviation:	0.0
+SN	inward oriented pairs:	1
+SN	outward oriented pairs:	0
+SN	pairs with other orientation:	0
+SN	pairs on different chromosomes:	0
+SN	percentage of properly paired reads (%):	100.0
+SN	bases inside the target:	180
+SN	percentage of target genome with coverage > 0 (%):	99.44
+# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+FFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
+FFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
+FFQ	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
+FFQ	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
+FFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
+FFQ	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	68	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	70	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	72	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	73	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	74	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	76	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	77	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+FFQ	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	79	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	80	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	81	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	82	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	83	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	84	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	85	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	86	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	87	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	88	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	89	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	90	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+FFQ	91	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+FFQ	92	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+FFQ	93	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	94	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	95	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+FFQ	96	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+FFQ	97	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+FFQ	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+FFQ	99	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+FFQ	100	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+LFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
+LFQ	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+LFQ	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
+LFQ	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
+LFQ	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
+LFQ	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0
+LFQ	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+LFQ	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
+LFQ	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
+LFQ	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
+LFQ	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
+LFQ	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
+LFQ	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
+LFQ	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+LFQ	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
+LFQ	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
+LFQ	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
+LFQ	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
+LFQ	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0
+LFQ	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
+LFQ	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0
+LFQ	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
+LFQ	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
+LFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
+LFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
+LFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
+LFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
+LFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
+LFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
+LFQ	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0
+LFQ	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
+LFQ	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
+LFQ	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0
+LFQ	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
+LFQ	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+LFQ	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0
+LFQ	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
+LFQ	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0
+LFQ	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0
+LFQ	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0
+LFQ	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
+LFQ	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
+LFQ	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0
+LFQ	55	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
+LFQ	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
+LFQ	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	59	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
+LFQ	60	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
+LFQ	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0
+LFQ	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0
+LFQ	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0
+LFQ	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	68	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	70	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
+LFQ	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
+LFQ	72	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	73	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
+LFQ	74	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
+LFQ	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	76	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
+LFQ	77	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0
+LFQ	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	79	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	80	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0
+LFQ	81	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	82	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
+LFQ	83	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	84	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
+LFQ	85	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	86	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
+LFQ	87	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+LFQ	88	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+LFQ	89	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
+LFQ	90	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	91	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	92	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	93	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	94	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	95	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
+LFQ	96	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	97	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
+LFQ	99	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0
+LFQ	100	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
+# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
+GCF	25.38	0
+GCF	51.26	1
+# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
+GCL	24.87	0
+GCL	50.25	1
+GCL	51.26	0
+GCL	52.26	1
+# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+GCC	1	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	2	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	3	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	4	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	5	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	6	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	7	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	8	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	9	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	10	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	11	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	12	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	13	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	14	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	15	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	16	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	17	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	18	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	19	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	20	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	21	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	22	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	23	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	24	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	25	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	26	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	27	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	28	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	29	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	30	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	31	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	32	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	33	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	34	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	35	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	36	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	37	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	38	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	39	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	40	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	41	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	42	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	43	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	44	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	45	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	46	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	47	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	48	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	49	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	50	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	51	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	52	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	53	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	54	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	55	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	56	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	57	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	58	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	59	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	60	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	61	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	62	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	63	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	64	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	65	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	66	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	67	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	68	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	69	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	70	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	71	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	72	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	73	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	74	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	75	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	76	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	77	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	78	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	79	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	80	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	81	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	82	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	83	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	84	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	85	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	86	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	87	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	88	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	89	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	90	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	91	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	92	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	93	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	94	0.00	33.33	0.00	66.67	0.00	0.00
+GCC	95	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	96	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	97	33.33	33.33	0.00	33.33	0.00	0.00
+GCC	98	0.00	66.67	0.00	33.33	0.00	0.00
+GCC	99	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	100	0.00	0.00	0.00	100.00	0.00	0.00
+# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+FBC	1	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	2	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	3	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	4	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	5	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	6	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	7	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	8	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	9	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	10	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	11	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	12	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	13	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	14	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	15	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	16	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	17	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	18	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	19	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	20	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	21	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	22	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	23	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	24	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	25	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	26	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	27	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	28	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	29	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	30	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	31	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	32	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	33	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	34	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	35	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	36	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	37	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	38	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	39	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	40	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	41	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	42	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	43	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	44	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	45	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	46	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	47	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	48	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	49	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	50	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	51	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	52	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	53	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	54	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	55	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	56	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	57	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	58	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	59	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	60	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	61	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	62	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	63	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	64	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	65	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	66	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	67	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	68	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	69	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	70	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	71	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	72	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	73	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	74	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	75	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	76	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	77	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	78	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	79	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	80	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	81	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	82	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	83	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	84	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	85	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	86	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	87	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	88	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	89	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	90	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	91	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	92	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	93	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	94	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	95	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	96	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	97	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	98	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	99	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	100	0.00	0.00	0.00	100.00	0.00	0.00
+# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+LBC	1	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	2	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	3	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	4	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	5	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	6	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	7	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	8	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	9	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	10	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	11	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	12	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	13	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	14	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	15	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	16	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	17	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	18	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	19	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	20	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	21	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	22	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	23	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	24	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	25	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	26	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	27	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	28	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	29	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	30	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	31	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	32	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	33	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	34	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	35	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	36	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	37	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	38	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	39	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	40	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	41	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	42	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	43	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	44	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	45	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	46	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	47	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	48	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	49	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	50	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	51	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	52	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	53	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	54	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	55	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	56	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	57	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	58	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	59	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	60	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	61	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	62	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	63	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	64	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	65	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	66	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	67	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	68	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	69	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	70	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	71	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	72	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	73	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	74	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	75	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	76	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	77	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	78	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	79	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	80	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	81	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	82	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	83	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	84	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	85	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	86	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	87	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	88	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	89	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	90	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	91	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	92	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	93	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	94	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	95	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	96	0.00	50.00	0.00	50.00	0.00	0.00
+LBC	97	50.00	0.00	0.00	50.00	0.00	0.00
+LBC	98	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	99	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	100	0.00	0.00	0.00	100.00	0.00	0.00
+# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
+IS	0	0	0	0	0
+IS	1	0	0	0	0
+IS	2	0	0	0	0
+IS	3	0	0	0	0
+IS	4	0	0	0	0
+IS	5	0	0	0	0
+IS	6	0	0	0	0
+IS	7	0	0	0	0
+IS	8	0	0	0	0
+IS	9	0	0	0	0
+IS	10	0	0	0	0
+IS	11	0	0	0	0
+IS	12	0	0	0	0
+IS	13	0	0	0	0
+IS	14	0	0	0	0
+IS	15	0	0	0	0
+IS	16	0	0	0	0
+IS	17	0	0	0	0
+IS	18	0	0	0	0
+IS	19	0	0	0	0
+IS	20	0	0	0	0
+IS	21	0	0	0	0
+IS	22	0	0	0	0
+IS	23	0	0	0	0
+IS	24	0	0	0	0
+IS	25	0	0	0	0
+IS	26	0	0	0	0
+IS	27	0	0	0	0
+IS	28	0	0	0	0
+IS	29	0	0	0	0
+IS	30	0	0	0	0
+IS	31	0	0	0	0
+IS	32	0	0	0	0
+IS	33	0	0	0	0
+IS	34	0	0	0	0
+IS	35	0	0	0	0
+IS	36	0	0	0	0
+IS	37	0	0	0	0
+IS	38	0	0	0	0
+IS	39	0	0	0	0
+IS	40	0	0	0	0
+IS	41	0	0	0	0
+IS	42	0	0	0	0
+IS	43	0	0	0	0
+IS	44	0	0	0	0
+IS	45	0	0	0	0
+IS	46	0	0	0	0
+IS	47	0	0	0	0
+IS	48	0	0	0	0
+IS	49	0	0	0	0
+IS	50	0	0	0	0
+IS	51	0	0	0	0
+IS	52	0	0	0	0
+IS	53	0	0	0	0
+IS	54	0	0	0	0
+IS	55	0	0	0	0
+IS	56	0	0	0	0
+IS	57	0	0	0	0
+IS	58	0	0	0	0
+IS	59	0	0	0	0
+IS	60	0	0	0	0
+IS	61	0	0	0	0
+IS	62	0	0	0	0
+IS	63	0	0	0	0
+IS	64	0	0	0	0
+IS	65	0	0	0	0
+IS	66	0	0	0	0
+IS	67	0	0	0	0
+IS	68	0	0	0	0
+IS	69	0	0	0	0
+IS	70	0	0	0	0
+IS	71	0	0	0	0
+IS	72	0	0	0	0
+IS	73	0	0	0	0
+IS	74	0	0	0	0
+IS	75	0	0	0	0
+IS	76	0	0	0	0
+IS	77	0	0	0	0
+IS	78	0	0	0	0
+IS	79	0	0	0	0
+IS	80	0	0	0	0
+IS	81	0	0	0	0
+IS	82	0	0	0	0
+IS	83	0	0	0	0
+IS	84	0	0	0	0
+IS	85	0	0	0	0
+IS	86	0	0	0	0
+IS	87	0	0	0	0
+IS	88	0	0	0	0
+IS	89	0	0	0	0
+IS	90	0	0	0	0
+IS	91	0	0	0	0
+IS	92	0	0	0	0
+IS	93	0	0	0	0
+IS	94	0	0	0	0
+IS	95	0	0	0	0
+IS	96	0	0	0	0
+IS	97	0	0	0	0
+IS	98	0	0	0	0
+IS	99	0	0	0	0
+IS	100	0	0	0	0
+IS	101	0	0	0	0
+IS	102	0	0	0	0
+IS	103	0	0	0	0
+IS	104	0	0	0	0
+IS	105	0	0	0	0
+IS	106	0	0	0	0
+IS	107	0	0	0	0
+IS	108	0	0	0	0
+IS	109	0	0	0	0
+IS	110	0	0	0	0
+IS	111	0	0	0	0
+IS	112	0	0	0	0
+IS	113	0	0	0	0
+IS	114	0	0	0	0
+IS	115	0	0	0	0
+IS	116	0	0	0	0
+IS	117	0	0	0	0
+IS	118	0	0	0	0
+IS	119	0	0	0	0
+IS	120	0	0	0	0
+IS	121	0	0	0	0
+IS	122	0	0	0	0
+IS	123	0	0	0	0
+IS	124	0	0	0	0
+IS	125	0	0	0	0
+IS	126	0	0	0	0
+IS	127	0	0	0	0
+IS	128	0	0	0	0
+IS	129	0	0	0	0
+IS	130	0	0	0	0
+IS	131	0	0	0	0
+IS	132	0	0	0	0
+IS	133	0	0	0	0
+IS	134	0	0	0	0
+IS	135	0	0	0	0
+IS	136	0	0	0	0
+IS	137	0	0	0	0
+IS	138	0	0	0	0
+IS	139	0	0	0	0
+IS	140	0	0	0	0
+IS	141	0	0	0	0
+IS	142	0	0	0	0
+IS	143	0	0	0	0
+IS	144	0	0	0	0
+IS	145	0	0	0	0
+IS	146	0	0	0	0
+IS	147	0	0	0	0
+IS	148	0	0	0	0
+IS	149	0	0	0	0
+IS	150	0	0	0	0
+IS	151	0	0	0	0
+IS	152	0	0	0	0
+IS	153	0	0	0	0
+IS	154	0	0	0	0
+IS	155	0	0	0	0
+IS	156	0	0	0	0
+IS	157	0	0	0	0
+IS	158	0	0	0	0
+IS	159	0	0	0	0
+IS	160	0	0	0	0
+IS	161	0	0	0	0
+IS	162	0	0	0	0
+IS	163	0	0	0	0
+IS	164	0	0	0	0
+IS	165	0	0	0	0
+IS	166	0	0	0	0
+IS	167	0	0	0	0
+IS	168	0	0	0	0
+IS	169	0	0	0	0
+IS	170	0	0	0	0
+IS	171	0	0	0	0
+IS	172	0	0	0	0
+IS	173	0	0	0	0
+IS	174	0	0	0	0
+IS	175	0	0	0	0
+IS	176	0	0	0	0
+IS	177	0	0	0	0
+IS	178	0	0	0	0
+IS	179	0	0	0	0
+IS	180	1	1	0	0
+# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
+RL	100	3
+# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
+FRL	100	1
+# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
+LRL	100	2
+# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
+ID	1	1	2
+# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
+IC	19	0	0	1	0
+IC	92	0	0	1	0
+IC	98	1	0	0	0
+# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
+COV	[1-1]	1	79
+COV	[2-2]	2	80
+COV	[3-3]	3	20
+# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
+GCD	0.0	100.000	0.000	0.000	0.000	0.000	0.000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/12_2reads.bed	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,1 @@
+14	38169880	38170045
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/12_3reads.bed	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,1 @@
+16	89701235	89701414
Binary file samtools_stats/test-data/12_overlaps.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/1_map_cigar.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,5 @@
+@HD	VN:1.4
+@SQ	SN:alpha	LN:100
+@RG	ID:s1_a_1	LB:1	SM:s1
+r1	99	alpha	1	40	35M	=	66	100	TGGGGTGTCATAGTAATCCGGTTGGGAGTCCGAGG	*	RG:Z:s1_a_1	NM:i:0
+r1	147	alpha	66	40	35M	=	1	-100	TATCCAGAACTTTGCAGCCATATCTCCAAGACATG	*	RG:Z:s1_a_1	NM:i:0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/2.stats.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,383 @@
+# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
+# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
+CHK	1a1c1362	29c426ae	7bab45da
+# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
+SN	raw total sequences:	2
+SN	filtered sequences:	0
+SN	sequences:	2
+SN	is sorted:	1
+SN	1st fragments:	1
+SN	last fragments:	1
+SN	reads mapped:	2
+SN	reads mapped and paired:	2	# paired-end technology bit set + both mates mapped
+SN	reads unmapped:	0
+SN	reads properly paired:	2	# proper-pair bit set
+SN	reads paired:	2	# paired-end technology bit set
+SN	reads duplicated:	0	# PCR or optical duplicate bit set
+SN	reads MQ0:	0	# mapped and MQ=0
+SN	reads QC failed:	0
+SN	non-primary alignments:	0
+SN	total length:	70	# ignores clipping
+SN	total first fragment length:	35	# ignores clipping
+SN	total last fragment length:	35	# ignores clipping
+SN	bases mapped:	70	# ignores clipping
+SN	bases mapped (cigar):	70	# more accurate
+SN	bases trimmed:	0
+SN	bases duplicated:	0
+SN	mismatches:	0	# from NM fields
+SN	error rate:	0.000000e+00	# mismatches / bases mapped (cigar)
+SN	average length:	35
+SN	average first fragment length:	35
+SN	average last fragment length:	35
+SN	maximum length:	35
+SN	maximum first fragment length:	35
+SN	maximum last fragment length:	35
+SN	average quality:	255.0
+SN	insert size average:	100.0
+SN	insert size standard deviation:	0.0
+SN	inward oriented pairs:	1
+SN	outward oriented pairs:	0
+SN	pairs with other orientation:	0
+SN	pairs on different chromosomes:	0
+SN	percentage of properly paired reads (%):	100.0
+# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+FFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
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+FFQ	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
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+LFQ	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+# Mismatches per cycle and quality. Use `grep ^MPC | cut -f 2-` to extract this part.
+# Columns correspond to qualities, rows to cycles. First column is the cycle number, second
+# is the number of N's and the rest is the number of mismatches
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+MPC	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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+MPC	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
+GCF	28.39	0
+GCF	58.29	1
+# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
+GCL	21.36	0
+GCL	43.97	1
+# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+GCC	1	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	2	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	3	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	4	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	5	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	6	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	7	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	8	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	9	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	10	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	11	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	12	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	13	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	14	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	15	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	16	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	17	0.00	50.00	0.00	50.00	0.00	0.00
+GCC	18	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	19	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	20	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	21	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	22	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	23	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	24	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	25	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	26	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	27	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	28	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	29	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	30	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	31	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	32	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	33	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	34	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	35	0.00	0.00	50.00	50.00	0.00	0.00
+# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+FBC	1	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	2	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	3	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	4	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	5	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	6	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	7	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	8	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	9	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	10	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	11	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	12	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	13	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	14	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	15	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	16	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	17	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	18	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	19	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	20	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	21	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	22	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	23	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	24	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	25	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	26	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	27	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	28	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	29	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	30	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	31	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	32	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	33	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	34	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	35	0.00	0.00	100.00	0.00	0.00	0.00
+# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+LBC	1	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	2	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	3	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	4	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	5	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	6	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	7	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	8	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	9	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	10	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	11	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	12	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	13	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	14	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	15	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	16	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	17	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	18	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	19	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	20	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	21	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	22	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	23	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	24	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	25	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	26	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	27	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	28	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	29	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	30	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	31	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	32	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	33	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	34	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	35	0.00	0.00	0.00	100.00	0.00	0.00
+# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
+IS	0	0	0	0	0
+IS	1	0	0	0	0
+IS	2	0	0	0	0
+IS	3	0	0	0	0
+IS	4	0	0	0	0
+IS	5	0	0	0	0
+IS	6	0	0	0	0
+IS	7	0	0	0	0
+IS	8	0	0	0	0
+IS	9	0	0	0	0
+IS	10	0	0	0	0
+IS	11	0	0	0	0
+IS	12	0	0	0	0
+IS	13	0	0	0	0
+IS	14	0	0	0	0
+IS	15	0	0	0	0
+IS	16	0	0	0	0
+IS	17	0	0	0	0
+IS	18	0	0	0	0
+IS	19	0	0	0	0
+IS	20	0	0	0	0
+IS	21	0	0	0	0
+IS	22	0	0	0	0
+IS	23	0	0	0	0
+IS	24	0	0	0	0
+IS	25	0	0	0	0
+IS	26	0	0	0	0
+IS	27	0	0	0	0
+IS	28	0	0	0	0
+IS	29	0	0	0	0
+IS	30	0	0	0	0
+IS	31	0	0	0	0
+IS	32	0	0	0	0
+IS	33	0	0	0	0
+IS	34	0	0	0	0
+IS	35	0	0	0	0
+IS	36	0	0	0	0
+IS	37	0	0	0	0
+IS	38	0	0	0	0
+IS	39	0	0	0	0
+IS	40	0	0	0	0
+IS	41	0	0	0	0
+IS	42	0	0	0	0
+IS	43	0	0	0	0
+IS	44	0	0	0	0
+IS	45	0	0	0	0
+IS	46	0	0	0	0
+IS	47	0	0	0	0
+IS	48	0	0	0	0
+IS	49	0	0	0	0
+IS	50	0	0	0	0
+IS	51	0	0	0	0
+IS	52	0	0	0	0
+IS	53	0	0	0	0
+IS	54	0	0	0	0
+IS	55	0	0	0	0
+IS	56	0	0	0	0
+IS	57	0	0	0	0
+IS	58	0	0	0	0
+IS	59	0	0	0	0
+IS	60	0	0	0	0
+IS	61	0	0	0	0
+IS	62	0	0	0	0
+IS	63	0	0	0	0
+IS	64	0	0	0	0
+IS	65	0	0	0	0
+IS	66	0	0	0	0
+IS	67	0	0	0	0
+IS	68	0	0	0	0
+IS	69	0	0	0	0
+IS	70	0	0	0	0
+IS	71	0	0	0	0
+IS	72	0	0	0	0
+IS	73	0	0	0	0
+IS	74	0	0	0	0
+IS	75	0	0	0	0
+IS	76	0	0	0	0
+IS	77	0	0	0	0
+IS	78	0	0	0	0
+IS	79	0	0	0	0
+IS	80	0	0	0	0
+IS	81	0	0	0	0
+IS	82	0	0	0	0
+IS	83	0	0	0	0
+IS	84	0	0	0	0
+IS	85	0	0	0	0
+IS	86	0	0	0	0
+IS	87	0	0	0	0
+IS	88	0	0	0	0
+IS	89	0	0	0	0
+IS	90	0	0	0	0
+IS	91	0	0	0	0
+IS	92	0	0	0	0
+IS	93	0	0	0	0
+IS	94	0	0	0	0
+IS	95	0	0	0	0
+IS	96	0	0	0	0
+IS	97	0	0	0	0
+IS	98	0	0	0	0
+IS	99	0	0	0	0
+IS	100	1	1	0	0
+# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
+RL	35	2
+# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
+FRL	35	1
+# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
+LRL	35	1
+# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
+# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
+# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
+COV	[1-1]	1	70
+# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
+GCD	0.0	100.000	0.000	0.000	0.000	0.000	0.000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/2_equal_cigar_full_seq.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,5 @@
+@HD	VN:1.4
+@SQ	SN:alpha	LN:100
+@RG	ID:s1_a_1	LB:1	SM:s1
+r1	99	alpha	1	40	35=	=	66	100	TGGGGTGTCATAGTAATCCGGTTGGGAGTCCGAGG	*	RG:Z:s1_a_1	NM:i:0
+r1	147	alpha	66	40	35=	=	1	-100	TATCCAGAACTTTGCAGCCATATCTCCAAGACATG	*	RG:Z:s1_a_1	NM:i:0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/5_insert_cigar.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,5 @@
+@HD	VN:1.4
+@SQ	SN:alpha	LN:100
+@RG	ID:s1_a_1	LB:1	SM:s1
+r1	99	alpha	1	40	1M1I33M	=	66	100	TGGGGGTGTCATAGTAATCCGGTTGGGAGTCCGAG	*	RG:Z:s1_a_1	NM:i:0
+r1	147	alpha	66	40	35M	=	1	-100	TATCCAGAACTTTGCAGCCATATCTCCAAGACATG	*	RG:Z:s1_a_1	NM:i:0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/6.stats.expected	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,385 @@
+# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
+# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
+CHK	1a1c1362	32507d92	7bab45da
+# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
+SN	raw total sequences:	2
+SN	filtered sequences:	0
+SN	sequences:	2
+SN	is sorted:	1
+SN	1st fragments:	1
+SN	last fragments:	1
+SN	reads mapped:	2
+SN	reads mapped and paired:	2	# paired-end technology bit set + both mates mapped
+SN	reads unmapped:	0
+SN	reads properly paired:	2	# proper-pair bit set
+SN	reads paired:	2	# paired-end technology bit set
+SN	reads duplicated:	0	# PCR or optical duplicate bit set
+SN	reads MQ0:	0	# mapped and MQ=0
+SN	reads QC failed:	0
+SN	non-primary alignments:	0
+SN	total length:	70	# ignores clipping
+SN	total first fragment length:	35	# ignores clipping
+SN	total last fragment length:	35	# ignores clipping
+SN	bases mapped:	70	# ignores clipping
+SN	bases mapped (cigar):	70	# more accurate
+SN	bases trimmed:	0
+SN	bases duplicated:	0
+SN	mismatches:	0	# from NM fields
+SN	error rate:	0.000000e+00	# mismatches / bases mapped (cigar)
+SN	average length:	35
+SN	average first fragment length:	35
+SN	average last fragment length:	35
+SN	maximum length:	35
+SN	maximum first fragment length:	35
+SN	maximum last fragment length:	35
+SN	average quality:	255.0
+SN	insert size average:	100.0
+SN	insert size standard deviation:	0.0
+SN	inward oriented pairs:	1
+SN	outward oriented pairs:	0
+SN	pairs with other orientation:	0
+SN	pairs on different chromosomes:	0
+SN	percentage of properly paired reads (%):	100.0
+# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+FFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
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+FFQ	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+FFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+LFQ	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
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+LFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+LFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
+# Mismatches per cycle and quality. Use `grep ^MPC | cut -f 2-` to extract this part.
+# Columns correspond to qualities, rows to cycles. First column is the cycle number, second
+# is the number of N's and the rest is the number of mismatches
+MPC	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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+MPC	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
+GCF	28.39	0
+GCF	58.29	1
+# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
+GCL	21.36	0
+GCL	43.97	1
+# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+GCC	1	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	2	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	3	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	4	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	5	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	6	0.00	0.00	100.00	0.00	0.00	0.00
+GCC	7	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	8	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	9	0.00	50.00	0.00	50.00	0.00	0.00
+GCC	10	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	11	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	12	0.00	50.00	0.00	50.00	0.00	0.00
+GCC	13	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	14	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	15	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	16	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	17	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	18	0.00	50.00	0.00	50.00	0.00	0.00
+GCC	19	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	20	50.00	50.00	0.00	0.00	0.00	0.00
+GCC	21	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	22	0.00	0.00	100.00	0.00	0.00	0.00
+GCC	23	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	24	0.00	0.00	0.00	100.00	0.00	0.00
+GCC	25	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	26	0.00	50.00	50.00	0.00	0.00	0.00
+GCC	27	50.00	0.00	50.00	0.00	0.00	0.00
+GCC	28	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	29	0.00	0.00	100.00	0.00	0.00	0.00
+GCC	30	50.00	0.00	0.00	50.00	0.00	0.00
+GCC	31	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	32	0.00	100.00	0.00	0.00	0.00	0.00
+GCC	33	0.00	0.00	50.00	50.00	0.00	0.00
+GCC	34	100.00	0.00	0.00	0.00	0.00	0.00
+GCC	35	0.00	0.00	50.00	50.00	0.00	0.00
+# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+FBC	1	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	2	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	3	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	4	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	5	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	6	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	7	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	8	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	9	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	10	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	11	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	12	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	13	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	14	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	15	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	16	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	17	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	18	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	19	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	20	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	21	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	22	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	23	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	24	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	25	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	26	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	27	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	28	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	29	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	30	0.00	0.00	0.00	100.00	0.00	0.00
+FBC	31	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	32	0.00	100.00	0.00	0.00	0.00	0.00
+FBC	33	0.00	0.00	100.00	0.00	0.00	0.00
+FBC	34	100.00	0.00	0.00	0.00	0.00	0.00
+FBC	35	0.00	0.00	100.00	0.00	0.00	0.00
+# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+LBC	1	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	2	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	3	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	4	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	5	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	6	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	7	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	8	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	9	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	10	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	11	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	12	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	13	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	14	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	15	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	16	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	17	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	18	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	19	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	20	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	21	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	22	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	23	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	24	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	25	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	26	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	27	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	28	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	29	0.00	0.00	100.00	0.00	0.00	0.00
+LBC	30	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	31	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	32	0.00	100.00	0.00	0.00	0.00	0.00
+LBC	33	0.00	0.00	0.00	100.00	0.00	0.00
+LBC	34	100.00	0.00	0.00	0.00	0.00	0.00
+LBC	35	0.00	0.00	0.00	100.00	0.00	0.00
+# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
+IS	0	0	0	0	0
+IS	1	0	0	0	0
+IS	2	0	0	0	0
+IS	3	0	0	0	0
+IS	4	0	0	0	0
+IS	5	0	0	0	0
+IS	6	0	0	0	0
+IS	7	0	0	0	0
+IS	8	0	0	0	0
+IS	9	0	0	0	0
+IS	10	0	0	0	0
+IS	11	0	0	0	0
+IS	12	0	0	0	0
+IS	13	0	0	0	0
+IS	14	0	0	0	0
+IS	15	0	0	0	0
+IS	16	0	0	0	0
+IS	17	0	0	0	0
+IS	18	0	0	0	0
+IS	19	0	0	0	0
+IS	20	0	0	0	0
+IS	21	0	0	0	0
+IS	22	0	0	0	0
+IS	23	0	0	0	0
+IS	24	0	0	0	0
+IS	25	0	0	0	0
+IS	26	0	0	0	0
+IS	27	0	0	0	0
+IS	28	0	0	0	0
+IS	29	0	0	0	0
+IS	30	0	0	0	0
+IS	31	0	0	0	0
+IS	32	0	0	0	0
+IS	33	0	0	0	0
+IS	34	0	0	0	0
+IS	35	0	0	0	0
+IS	36	0	0	0	0
+IS	37	0	0	0	0
+IS	38	0	0	0	0
+IS	39	0	0	0	0
+IS	40	0	0	0	0
+IS	41	0	0	0	0
+IS	42	0	0	0	0
+IS	43	0	0	0	0
+IS	44	0	0	0	0
+IS	45	0	0	0	0
+IS	46	0	0	0	0
+IS	47	0	0	0	0
+IS	48	0	0	0	0
+IS	49	0	0	0	0
+IS	50	0	0	0	0
+IS	51	0	0	0	0
+IS	52	0	0	0	0
+IS	53	0	0	0	0
+IS	54	0	0	0	0
+IS	55	0	0	0	0
+IS	56	0	0	0	0
+IS	57	0	0	0	0
+IS	58	0	0	0	0
+IS	59	0	0	0	0
+IS	60	0	0	0	0
+IS	61	0	0	0	0
+IS	62	0	0	0	0
+IS	63	0	0	0	0
+IS	64	0	0	0	0
+IS	65	0	0	0	0
+IS	66	0	0	0	0
+IS	67	0	0	0	0
+IS	68	0	0	0	0
+IS	69	0	0	0	0
+IS	70	0	0	0	0
+IS	71	0	0	0	0
+IS	72	0	0	0	0
+IS	73	0	0	0	0
+IS	74	0	0	0	0
+IS	75	0	0	0	0
+IS	76	0	0	0	0
+IS	77	0	0	0	0
+IS	78	0	0	0	0
+IS	79	0	0	0	0
+IS	80	0	0	0	0
+IS	81	0	0	0	0
+IS	82	0	0	0	0
+IS	83	0	0	0	0
+IS	84	0	0	0	0
+IS	85	0	0	0	0
+IS	86	0	0	0	0
+IS	87	0	0	0	0
+IS	88	0	0	0	0
+IS	89	0	0	0	0
+IS	90	0	0	0	0
+IS	91	0	0	0	0
+IS	92	0	0	0	0
+IS	93	0	0	0	0
+IS	94	0	0	0	0
+IS	95	0	0	0	0
+IS	96	0	0	0	0
+IS	97	0	0	0	0
+IS	98	0	0	0	0
+IS	99	0	0	0	0
+IS	100	1	1	0	0
+# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
+RL	35	2
+# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
+FRL	35	1
+# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
+LRL	35	1
+# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
+ID	1	1	0
+# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
+IC	2	1	0	0	0
+# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
+COV	[1-1]	1	69
+# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
+GCD	0.0	100.000	0.000	0.000	0.000	0.000	0.000
Binary file samtools_stats/test-data/phiX.bam has changed
Binary file samtools_stats/test-data/samtools_stats_input.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/samtools_stats_out1.tab	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,1663 @@
+# This file was produced by samtools stats (1.9+htslib-1.9) and can be plotted using plot-bamstats
+# This file contains statistics for all reads.
+# The command line was:  stats --ref-seq reference.fa infile
+# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
+# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
+CHK	1bd20fd8	58ad2167	29883386
+# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
+SN	raw total sequences:	200
+SN	filtered sequences:	0
+SN	sequences:	200
+SN	is sorted:	1
+SN	1st fragments:	100
+SN	last fragments:	100
+SN	reads mapped:	25
+SN	reads mapped and paired:	0	# paired-end technology bit set + both mates mapped
+SN	reads unmapped:	175
+SN	reads properly paired:	0	# proper-pair bit set
+SN	reads paired:	200	# paired-end technology bit set
+SN	reads duplicated:	0	# PCR or optical duplicate bit set
+SN	reads MQ0:	6	# mapped and MQ=0
+SN	reads QC failed:	0
+SN	non-primary alignments:	0
+SN	total length:	50200	# ignores clipping
+SN	total first fragment length:	25100	# ignores clipping
+SN	total last fragment length:	25100	# ignores clipping
+SN	bases mapped:	6275	# ignores clipping
+SN	bases mapped (cigar):	6275	# more accurate
+SN	bases trimmed:	0
+SN	bases duplicated:	0
+SN	mismatches:	591	# from NM fields
+SN	error rate:	9.418327e-02	# mismatches / bases mapped (cigar)
+SN	average length:	251
+SN	average first fragment length:	251
+SN	average last fragment length:	251
+SN	maximum length:	251
+SN	maximum first fragment length:	251
+SN	maximum last fragment length:	251
+SN	average quality:	34.7
+SN	insert size average:	0.0
+SN	insert size standard deviation:	0.0
+SN	inward oriented pairs:	0
+SN	outward oriented pairs:	0
+SN	pairs with other orientation:	0
+SN	pairs on different chromosomes:	0
+SN	percentage of properly paired reads (%):	0.0
+# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+FFQ	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	3	2	0	20	38	32	1	0	0	0	0	0	0
+FFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	18	36	36	6	0	0	0	0	0	0
+FFQ	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	14	31	46	5	0	0	0	0	0	0
+FFQ	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	8	36	42	11	0	0	0	0	0	0
+FFQ	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	12	35	43	6	0	0	0	0	0	0
+FFQ	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	7	8	0	0	81	0	0	0	0
+FFQ	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	13	1	0	76	0	0	0	0
+FFQ	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	11	15	4	0	69	0	0	0	0
+FFQ	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	6	20	3	0	68	0	0	0	0
+FFQ	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	11	5	0	75	0	0	0	0
+FFQ	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	16	6	0	70	0	0	0	0
+FFQ	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	8	2	0	86	0	0	0	0
+FFQ	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	92	0	0	0
+FFQ	14	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	1	0	3	89	0	0	0
+FFQ	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	4	91	0	0	0
+FFQ	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	96	0	0	0
+FFQ	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	3	94	0	0	0
+FFQ	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	2	93	0	0	0
+FFQ	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	4	93	0	0	0
+FFQ	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	4	91	0	0	0
+FFQ	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	3	94	0	0	0
+FFQ	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	97	0	0	0
+FFQ	23	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	4	18	74	0	0
+FFQ	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	19	76	0	0
+FFQ	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	4	15	76	0	0
+FFQ	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	2	18	75	0	0
+FFQ	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	12	84	0	0
+FFQ	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	5	16	74	0	0
+FFQ	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	6	19	73	0	0
+FFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	12	17	67	0	0
+FFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	1	2	15	77	0	0
+FFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	7	22	68	0	0
+FFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	1	3	18	73	0	0
+FFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	7	19	72	0	0
+FFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	2	23	71	0	0
+FFQ	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	26	69	0	0
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+FFQ	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	1	1	0	8	22	63	0	0
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+FFQ	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	9	28	58	0	0
+FFQ	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	1	6	12	76	0	0
+FFQ	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	4	2	28	63	0	0
+FFQ	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	6	27	62	0	0
+FFQ	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	2	8	27	58	0	0
+FFQ	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	21	73	0	0
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+FFQ	171	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	3	3	2	5	8	5	7	36	10	11	0	0
+FFQ	172	0	0	0	0	0	0	0	0	0	0	0	0	6	5	0	1	0	0	0	0	0	0	0	0	0	0	3	1	0	0	3	0	3	4	5	6	4	32	15	12	0	0
+FFQ	173	0	0	0	0	0	0	0	0	0	0	0	0	4	1	1	0	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0	0	6	4	4	5	4	37	18	11	0	0
+FFQ	174	0	0	0	0	0	0	0	0	0	0	0	0	4	2	1	1	0	0	0	0	0	0	0	0	1	1	2	1	0	0	0	3	3	4	7	3	5	36	12	14	0	0
+FFQ	175	0	0	0	0	0	0	0	0	0	0	0	0	4	2	0	2	0	0	0	0	0	0	0	0	0	2	2	1	0	0	3	3	6	3	10	3	4	30	13	12	0	0
+FFQ	176	0	0	0	0	0	0	0	0	0	0	0	0	3	1	1	5	0	0	0	0	0	0	0	0	0	1	4	1	1	3	2	1	2	3	4	3	2	42	7	14	0	0
+FFQ	177	0	0	0	0	0	0	0	0	0	0	0	0	3	3	2	4	0	0	0	0	0	0	0	0	1	2	2	0	0	1	2	1	1	5	5	7	3	33	11	14	0	0
+FFQ	178	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	3	0	0	0	0	0	0	0	0	1	3	1	0	0	0	0	0	3	6	9	2	8	39	10	10	0	0
+FFQ	179	0	0	0	0	0	0	0	0	0	0	0	0	2	4	2	3	0	0	0	0	0	0	0	0	1	1	2	0	0	0	1	1	1	7	8	2	6	36	10	13	0	0
+FFQ	180	0	0	0	0	0	0	0	0	0	0	0	0	1	4	3	3	0	0	0	0	0	0	0	0	3	1	1	0	0	0	3	0	4	3	4	2	8	41	13	6	0	0
+FFQ	181	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	2	0	0	0	0	0	0	0	0	1	1	2	0	0	0	2	1	6	10	5	5	4	39	10	8	0	0
+FFQ	182	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	1	0	0	0	0	0	0	0	0	5	1	2	0	0	0	2	1	2	5	4	2	3	46	19	3	0	0
+FFQ	183	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	3	0	0	0	0	0	0	0	0	1	0	0	1	0	2	1	0	1	8	6	4	7	43	14	4	0	0
+FFQ	184	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	0	0	0	0	0	0	0	2	1	1	0	1	0	0	3	3	4	6	3	5	55	8	2	0	0
+FFQ	185	0	0	0	0	0	0	0	0	0	0	0	0	3	2	1	3	0	0	0	0	0	0	0	0	0	1	2	0	1	1	1	1	2	7	2	4	8	47	9	5	0	0
+FFQ	186	0	0	0	0	0	0	0	0	0	0	0	0	1	1	4	6	0	0	0	0	0	0	0	0	2	0	5	0	0	0	1	1	3	11	5	5	4	37	11	3	0	0
+FFQ	187	0	0	0	0	0	0	0	0	0	0	0	0	4	1	3	3	0	0	0	0	0	0	0	0	5	1	1	0	2	0	1	1	6	10	3	2	3	41	10	3	0	0
+FFQ	188	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	3	0	0	0	0	0	0	0	0	2	4	7	0	1	0	3	2	7	7	6	3	4	34	9	2	0	0
+FFQ	189	0	0	0	0	0	0	0	0	0	0	0	0	3	4	3	4	0	0	0	0	0	0	0	0	4	0	5	2	0	0	5	0	6	8	3	8	8	30	6	1	0	0
+FFQ	190	0	0	0	0	0	0	0	0	0	0	0	0	5	5	3	6	0	0	0	0	0	0	0	0	2	1	3	0	1	0	2	2	7	11	1	8	3	34	6	0	0	0
+FFQ	191	0	0	0	0	0	0	0	0	0	0	0	0	5	7	2	4	0	0	0	0	0	0	0	0	3	0	3	0	0	0	1	0	4	5	9	6	12	33	6	0	0	0
+FFQ	192	0	0	0	0	0	0	0	0	0	0	0	0	3	3	2	6	0	0	0	0	0	0	0	0	3	3	6	0	1	0	0	1	5	9	4	4	5	38	7	0	0	0
+FFQ	193	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	7	0	0	0	0	0	0	0	0	4	3	3	0	0	0	0	0	5	10	4	2	11	43	4	0	0	0
+FFQ	194	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	6	0	0	0	0	0	0	0	0	5	1	8	0	1	0	1	0	4	8	2	7	3	43	8	0	0	0
+FFQ	195	0	0	0	0	0	0	0	0	0	0	0	0	4	1	2	8	0	0	0	0	0	0	0	0	0	0	4	0	1	0	3	0	2	13	1	4	8	39	10	0	0	0
+FFQ	196	0	0	0	0	0	0	0	0	0	0	0	0	1	6	1	3	0	0	0	0	0	0	0	0	1	1	3	0	2	0	1	1	4	11	2	1	9	43	10	0	0	0
+FFQ	197	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	10	0	0	0	0	0	0	0	0	3	0	1	0	0	0	2	1	6	10	2	0	4	47	10	0	0	0
+FFQ	198	0	0	0	0	0	0	0	0	0	0	0	0	2	4	4	7	0	0	0	0	0	0	0	0	1	0	5	1	2	1	0	0	1	7	4	2	4	47	8	0	0	0
+FFQ	199	0	0	0	0	0	0	0	0	0	0	0	0	1	4	5	6	0	0	0	0	0	0	0	0	3	2	7	0	0	0	1	0	3	7	3	3	7	39	9	0	0	0
+FFQ	200	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	8	0	0	0	0	0	0	0	0	5	1	1	0	1	0	2	0	5	12	5	5	3	40	5	0	0	0
+FFQ	201	0	0	0	0	0	0	0	0	0	0	0	0	2	1	6	7	0	0	0	0	0	0	0	0	5	0	4	0	0	0	1	1	7	8	1	0	4	47	6	0	0	0
+FFQ	202	0	0	0	0	0	0	0	0	0	0	0	0	6	7	3	8	0	0	0	0	0	0	0	0	3	3	1	0	0	0	1	0	4	12	2	3	2	34	11	0	0	0
+FFQ	203	0	0	0	0	0	0	0	0	0	0	0	0	8	5	2	5	0	0	0	0	0	0	0	0	2	0	4	0	1	0	1	1	4	9	7	2	2	37	10	0	0	0
+FFQ	204	0	0	0	0	0	0	0	0	0	0	0	0	2	5	1	6	0	0	0	0	0	0	0	0	4	3	5	0	0	0	0	0	5	11	3	3	5	41	6	0	0	0
+FFQ	205	0	0	0	0	0	0	0	0	0	0	0	0	5	11	1	5	0	0	0	0	0	0	0	0	3	0	3	0	0	0	2	0	4	18	2	4	4	33	5	0	0	0
+FFQ	206	0	0	0	0	0	0	0	0	0	0	0	0	3	7	2	5	0	0	0	0	0	0	0	0	4	5	7	0	0	0	0	0	2	13	0	3	4	37	8	0	0	0
+FFQ	207	0	0	0	0	0	0	0	0	0	0	0	0	1	6	5	6	0	0	0	0	0	0	0	0	4	2	4	0	2	0	4	1	3	10	4	2	3	36	7	0	0	0
+FFQ	208	0	0	0	0	0	0	0	0	0	0	0	0	1	4	3	4	0	0	0	0	0	0	0	0	6	4	4	0	0	0	1	0	9	11	2	5	3	36	7	0	0	0
+FFQ	209	0	0	0	0	0	0	0	0	0	0	0	0	2	7	4	8	0	0	0	0	0	0	0	0	3	2	4	0	0	0	3	0	8	14	2	1	2	33	7	0	0	0
+FFQ	210	0	0	0	0	0	0	0	0	0	0	0	0	1	5	6	7	0	0	0	0	0	0	0	0	4	3	3	0	0	0	3	0	6	6	0	3	5	43	5	0	0	0
+FFQ	211	0	0	0	0	0	0	0	0	0	0	0	0	2	5	6	4	0	0	0	0	0	0	0	0	6	3	5	0	0	0	0	2	5	11	4	3	3	35	6	0	0	0
+FFQ	212	0	0	0	0	0	0	0	0	0	0	0	0	0	3	6	7	0	0	0	0	0	0	0	0	3	4	8	0	0	0	0	0	5	17	1	1	4	35	6	0	0	0
+FFQ	213	0	0	0	0	0	0	0	0	0	0	0	0	6	6	10	5	0	0	0	0	0	0	0	0	5	3	1	0	0	0	0	1	4	7	1	5	2	43	1	0	0	0
+FFQ	214	0	0	0	0	0	0	0	0	0	0	0	0	4	9	4	10	0	0	0	0	0	0	0	0	4	1	6	0	2	0	1	1	3	9	0	2	3	39	2	0	0	0
+FFQ	215	0	0	0	0	0	0	0	0	0	0	0	0	5	6	5	6	0	0	0	0	0	0	0	0	5	5	8	0	0	0	1	2	5	12	0	0	4	34	2	0	0	0
+FFQ	216	0	0	0	0	0	0	0	0	0	0	0	0	3	3	6	5	0	0	0	0	0	0	0	0	3	6	5	1	3	0	1	0	5	15	1	3	2	37	1	0	0	0
+FFQ	217	0	0	0	0	0	0	0	0	0	0	0	0	3	7	6	4	0	0	0	0	0	0	0	0	4	1	2	0	0	1	1	0	10	15	1	3	2	39	1	0	0	0
+FFQ	218	0	0	0	0	0	0	0	0	0	0	0	0	2	4	7	2	0	0	0	0	0	0	0	0	6	4	10	0	0	0	1	0	3	13	1	5	3	35	4	0	0	0
+FFQ	219	0	0	0	0	0	0	0	0	0	0	0	0	2	5	4	4	0	0	0	0	0	0	0	0	5	1	5	0	0	1	0	0	4	13	1	6	3	45	1	0	0	0
+FFQ	220	0	0	0	0	0	0	0	0	0	0	0	0	2	4	9	4	0	0	0	0	0	0	0	0	4	2	2	0	0	0	0	2	5	14	1	1	2	47	1	0	0	0
+FFQ	221	0	0	0	0	0	0	0	0	0	0	0	0	3	4	6	4	0	0	0	0	0	0	0	0	1	4	6	0	0	0	0	0	2	10	1	3	3	53	0	0	0	0
+FFQ	222	0	0	0	0	0	0	0	0	0	0	0	0	3	5	8	6	0	0	0	0	0	0	0	0	5	2	6	0	0	0	0	0	2	6	1	3	4	49	0	0	0	0
+FFQ	223	0	0	0	0	0	0	0	0	0	0	0	0	5	8	6	8	0	0	0	0	0	0	0	0	3	3	5	1	1	0	1	0	0	13	1	0	2	43	0	0	0	0
+FFQ	224	0	0	0	0	0	0	0	0	0	0	0	0	2	9	11	6	0	0	0	0	0	0	0	0	4	3	3	0	0	0	0	1	2	15	1	0	1	42	0	0	0	0
+FFQ	225	0	0	0	0	0	0	0	0	0	0	0	0	4	8	2	4	0	0	0	0	0	0	0	0	7	3	10	0	2	0	0	0	3	10	1	2	5	39	0	0	0	0
+FFQ	226	0	0	0	0	0	0	0	0	0	0	0	0	5	9	3	7	0	0	0	0	0	0	0	0	8	5	5	0	1	0	2	1	3	13	0	2	3	33	0	0	0	0
+FFQ	227	0	0	0	0	0	0	0	0	0	0	0	0	10	8	4	5	0	0	0	0	0	0	0	0	3	2	3	0	0	0	2	3	5	17	0	3	2	33	0	0	0	0
+FFQ	228	0	0	0	0	0	0	0	0	0	0	0	0	10	8	6	2	0	0	0	0	0	0	0	0	6	1	6	0	1	2	1	1	4	13	1	2	1	35	0	0	0	0
+FFQ	229	0	0	0	0	0	0	0	0	0	0	0	0	4	11	6	6	0	0	0	0	0	0	0	0	1	3	5	0	0	0	0	2	6	13	0	3	5	35	0	0	0	0
+FFQ	230	0	0	0	0	0	0	0	0	0	0	0	0	4	11	10	7	0	0	0	0	0	0	0	0	2	3	4	0	0	0	1	2	9	10	0	1	1	35	0	0	0	0
+FFQ	231	0	0	0	0	0	0	0	0	0	0	0	0	6	7	6	6	0	0	0	0	0	0	0	0	4	5	4	0	1	0	1	0	4	13	1	5	5	32	0	0	0	0
+FFQ	232	0	0	0	0	0	0	0	0	0	0	0	0	3	7	10	4	0	0	0	0	0	0	0	0	6	4	7	0	0	0	0	0	3	12	0	1	3	40	0	0	0	0
+FFQ	233	0	0	0	0	0	0	0	0	0	0	0	0	7	7	9	8	0	0	0	0	0	0	0	0	5	5	3	1	1	0	0	0	6	10	1	1	4	32	0	0	0	0
+FFQ	234	0	0	0	0	0	0	0	0	0	0	0	0	9	6	10	5	0	0	0	0	0	0	0	0	5	5	3	1	0	0	0	1	5	11	0	1	4	34	0	0	0	0
+FFQ	235	0	0	0	0	0	0	0	0	0	0	0	0	4	10	13	7	0	0	0	0	0	0	0	0	5	1	4	0	0	0	2	1	5	7	0	0	4	37	0	0	0	0
+FFQ	236	0	0	0	0	0	0	0	0	0	0	0	0	7	8	15	6	0	0	0	0	0	0	0	0	7	3	5	1	0	0	0	1	6	8	0	1	1	31	0	0	0	0
+FFQ	237	0	0	0	0	0	0	0	0	0	0	0	0	2	9	13	6	0	0	0	0	0	0	0	0	6	4	7	1	0	0	0	1	3	12	0	1	1	34	0	0	0	0
+FFQ	238	0	0	0	0	0	0	0	0	0	0	0	0	2	10	16	6	0	0	0	0	0	0	0	0	9	2	3	0	0	0	0	0	5	9	0	2	3	33	0	0	0	0
+FFQ	239	0	0	0	0	0	0	0	0	0	0	0	0	4	5	17	9	0	0	0	0	0	0	0	0	7	3	1	0	0	0	1	1	2	15	0	1	3	31	0	0	0	0
+FFQ	240	0	0	0	0	0	0	0	0	0	0	0	0	0	10	19	6	0	0	0	0	0	0	0	0	6	4	4	0	0	1	3	0	2	13	0	1	1	30	0	0	0	0
+FFQ	241	0	0	0	0	0	0	0	0	0	0	0	0	1	4	23	9	0	0	0	0	0	0	0	0	7	5	8	1	0	0	2	1	1	8	0	1	3	26	0	0	0	0
+FFQ	242	0	0	0	0	0	0	0	0	0	0	0	0	3	10	19	10	0	0	0	0	0	0	0	0	2	5	4	1	0	0	0	1	2	10	0	0	2	31	0	0	0	0
+FFQ	243	0	0	0	0	0	0	0	0	0	0	0	0	2	2	17	14	0	0	0	0	0	0	0	0	6	5	5	0	0	0	0	0	6	13	0	2	3	25	0	0	0	0
+FFQ	244	0	0	0	0	0	0	0	0	0	0	0	0	1	3	18	11	0	0	0	0	0	0	0	0	6	5	5	1	0	0	1	0	2	12	0	5	1	29	0	0	0	0
+FFQ	245	0	0	0	0	0	0	0	0	0	0	0	0	1	8	14	11	0	0	0	0	0	0	0	0	8	5	3	1	0	0	1	0	1	15	1	1	3	27	0	0	0	0
+FFQ	246	0	0	0	0	0	0	0	0	0	0	0	0	4	6	15	12	0	0	0	0	0	0	0	0	5	2	8	1	0	1	1	0	1	13	0	2	1	28	0	0	0	0
+FFQ	247	0	0	0	0	0	0	0	0	0	0	0	0	8	3	16	14	0	0	0	0	0	0	0	0	10	4	6	0	0	0	0	0	2	15	1	2	2	17	0	0	0	0
+FFQ	248	0	0	0	0	0	0	0	0	0	0	0	0	5	6	21	8	0	0	0	0	0	0	0	0	7	8	6	2	0	0	0	1	1	14	0	2	2	17	0	0	0	0
+FFQ	249	0	0	0	0	0	0	0	0	0	0	0	0	5	6	20	8	0	0	0	0	0	0	0	0	5	7	10	0	1	0	0	0	1	15	0	2	0	20	0	0	0	0
+FFQ	250	0	0	0	0	0	0	0	0	0	0	0	0	2	10	15	10	0	0	0	0	0	0	0	0	9	5	8	1	0	0	0	2	6	10	0	0	2	20	0	0	0	0
+FFQ	251	0	0	0	0	0	0	0	0	0	0	0	0	7	20	21	17	0	0	0	0	0	0	0	0	7	7	6	0	0	0	0	1	2	4	0	0	0	8	0	0	0	0
+# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+LFQ	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	3	2	0	20	38	32	1	0	0	0	0	0	0
+LFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	18	36	36	6	0	0	0	0	0	0
+LFQ	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	14	31	46	5	0	0	0	0	0	0
+LFQ	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	8	36	42	11	0	0	0	0	0	0
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+LFQ	183	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	3	0	0	0	0	0	0	0	0	1	0	0	1	0	2	1	0	1	8	6	4	7	43	14	4	0	0
+LFQ	184	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	0	0	0	0	0	0	0	2	1	1	0	1	0	0	3	3	4	6	3	5	55	8	2	0	0
+LFQ	185	0	0	0	0	0	0	0	0	0	0	0	0	3	2	1	3	0	0	0	0	0	0	0	0	0	1	2	0	1	1	1	1	2	7	2	4	8	47	9	5	0	0
+LFQ	186	0	0	0	0	0	0	0	0	0	0	0	0	1	1	4	6	0	0	0	0	0	0	0	0	2	0	5	0	0	0	1	1	3	11	5	5	4	37	11	3	0	0
+LFQ	187	0	0	0	0	0	0	0	0	0	0	0	0	4	1	3	3	0	0	0	0	0	0	0	0	5	1	1	0	2	0	1	1	6	10	3	2	3	41	10	3	0	0
+LFQ	188	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	3	0	0	0	0	0	0	0	0	2	4	7	0	1	0	3	2	7	7	6	3	4	34	9	2	0	0
+LFQ	189	0	0	0	0	0	0	0	0	0	0	0	0	3	4	3	4	0	0	0	0	0	0	0	0	4	0	5	2	0	0	5	0	6	8	3	8	8	30	6	1	0	0
+LFQ	190	0	0	0	0	0	0	0	0	0	0	0	0	5	5	3	6	0	0	0	0	0	0	0	0	2	1	3	0	1	0	2	2	7	11	1	8	3	34	6	0	0	0
+LFQ	191	0	0	0	0	0	0	0	0	0	0	0	0	5	7	2	4	0	0	0	0	0	0	0	0	3	0	3	0	0	0	1	0	4	5	9	6	12	33	6	0	0	0
+LFQ	192	0	0	0	0	0	0	0	0	0	0	0	0	3	3	2	6	0	0	0	0	0	0	0	0	3	3	6	0	1	0	0	1	5	9	4	4	5	38	7	0	0	0
+LFQ	193	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	7	0	0	0	0	0	0	0	0	4	3	3	0	0	0	0	0	5	10	4	2	11	43	4	0	0	0
+LFQ	194	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	6	0	0	0	0	0	0	0	0	5	1	8	0	1	0	1	0	4	8	2	7	3	43	8	0	0	0
+LFQ	195	0	0	0	0	0	0	0	0	0	0	0	0	4	1	2	8	0	0	0	0	0	0	0	0	0	0	4	0	1	0	3	0	2	13	1	4	8	39	10	0	0	0
+LFQ	196	0	0	0	0	0	0	0	0	0	0	0	0	1	6	1	3	0	0	0	0	0	0	0	0	1	1	3	0	2	0	1	1	4	11	2	1	9	43	10	0	0	0
+LFQ	197	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	10	0	0	0	0	0	0	0	0	3	0	1	0	0	0	2	1	6	10	2	0	4	47	10	0	0	0
+LFQ	198	0	0	0	0	0	0	0	0	0	0	0	0	2	4	4	7	0	0	0	0	0	0	0	0	1	0	5	1	2	1	0	0	1	7	4	2	4	47	8	0	0	0
+LFQ	199	0	0	0	0	0	0	0	0	0	0	0	0	1	4	5	6	0	0	0	0	0	0	0	0	3	2	7	0	0	0	1	0	3	7	3	3	7	39	9	0	0	0
+LFQ	200	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	8	0	0	0	0	0	0	0	0	5	1	1	0	1	0	2	0	5	12	5	5	3	40	5	0	0	0
+LFQ	201	0	0	0	0	0	0	0	0	0	0	0	0	2	1	6	7	0	0	0	0	0	0	0	0	5	0	4	0	0	0	1	1	7	8	1	0	4	47	6	0	0	0
+LFQ	202	0	0	0	0	0	0	0	0	0	0	0	0	6	7	3	8	0	0	0	0	0	0	0	0	3	3	1	0	0	0	1	0	4	12	2	3	2	34	11	0	0	0
+LFQ	203	0	0	0	0	0	0	0	0	0	0	0	0	8	5	2	5	0	0	0	0	0	0	0	0	2	0	4	0	1	0	1	1	4	9	7	2	2	37	10	0	0	0
+LFQ	204	0	0	0	0	0	0	0	0	0	0	0	0	2	5	1	6	0	0	0	0	0	0	0	0	4	3	5	0	0	0	0	0	5	11	3	3	5	41	6	0	0	0
+LFQ	205	0	0	0	0	0	0	0	0	0	0	0	0	5	11	1	5	0	0	0	0	0	0	0	0	3	0	3	0	0	0	2	0	4	18	2	4	4	33	5	0	0	0
+LFQ	206	0	0	0	0	0	0	0	0	0	0	0	0	3	7	2	5	0	0	0	0	0	0	0	0	4	5	7	0	0	0	0	0	2	13	0	3	4	37	8	0	0	0
+LFQ	207	0	0	0	0	0	0	0	0	0	0	0	0	1	6	5	6	0	0	0	0	0	0	0	0	4	2	4	0	2	0	4	1	3	10	4	2	3	36	7	0	0	0
+LFQ	208	0	0	0	0	0	0	0	0	0	0	0	0	1	4	3	4	0	0	0	0	0	0	0	0	6	4	4	0	0	0	1	0	9	11	2	5	3	36	7	0	0	0
+LFQ	209	0	0	0	0	0	0	0	0	0	0	0	0	2	7	4	8	0	0	0	0	0	0	0	0	3	2	4	0	0	0	3	0	8	14	2	1	2	33	7	0	0	0
+LFQ	210	0	0	0	0	0	0	0	0	0	0	0	0	1	5	6	7	0	0	0	0	0	0	0	0	4	3	3	0	0	0	3	0	6	6	0	3	5	43	5	0	0	0
+LFQ	211	0	0	0	0	0	0	0	0	0	0	0	0	2	5	6	4	0	0	0	0	0	0	0	0	6	3	5	0	0	0	0	2	5	11	4	3	3	35	6	0	0	0
+LFQ	212	0	0	0	0	0	0	0	0	0	0	0	0	0	3	6	7	0	0	0	0	0	0	0	0	3	4	8	0	0	0	0	0	5	17	1	1	4	35	6	0	0	0
+LFQ	213	0	0	0	0	0	0	0	0	0	0	0	0	6	6	10	5	0	0	0	0	0	0	0	0	5	3	1	0	0	0	0	1	4	7	1	5	2	43	1	0	0	0
+LFQ	214	0	0	0	0	0	0	0	0	0	0	0	0	4	9	4	10	0	0	0	0	0	0	0	0	4	1	6	0	2	0	1	1	3	9	0	2	3	39	2	0	0	0
+LFQ	215	0	0	0	0	0	0	0	0	0	0	0	0	5	6	5	6	0	0	0	0	0	0	0	0	5	5	8	0	0	0	1	2	5	12	0	0	4	34	2	0	0	0
+LFQ	216	0	0	0	0	0	0	0	0	0	0	0	0	3	3	6	5	0	0	0	0	0	0	0	0	3	6	5	1	3	0	1	0	5	15	1	3	2	37	1	0	0	0
+LFQ	217	0	0	0	0	0	0	0	0	0	0	0	0	3	7	6	4	0	0	0	0	0	0	0	0	4	1	2	0	0	1	1	0	10	15	1	3	2	39	1	0	0	0
+LFQ	218	0	0	0	0	0	0	0	0	0	0	0	0	2	4	7	2	0	0	0	0	0	0	0	0	6	4	10	0	0	0	1	0	3	13	1	5	3	35	4	0	0	0
+LFQ	219	0	0	0	0	0	0	0	0	0	0	0	0	2	5	4	4	0	0	0	0	0	0	0	0	5	1	5	0	0	1	0	0	4	13	1	6	3	45	1	0	0	0
+LFQ	220	0	0	0	0	0	0	0	0	0	0	0	0	2	4	9	4	0	0	0	0	0	0	0	0	4	2	2	0	0	0	0	2	5	14	1	1	2	47	1	0	0	0
+LFQ	221	0	0	0	0	0	0	0	0	0	0	0	0	3	4	6	4	0	0	0	0	0	0	0	0	1	4	6	0	0	0	0	0	2	10	1	3	3	53	0	0	0	0
+LFQ	222	0	0	0	0	0	0	0	0	0	0	0	0	3	5	8	6	0	0	0	0	0	0	0	0	5	2	6	0	0	0	0	0	2	6	1	3	4	49	0	0	0	0
+LFQ	223	0	0	0	0	0	0	0	0	0	0	0	0	5	8	6	8	0	0	0	0	0	0	0	0	3	3	5	1	1	0	1	0	0	13	1	0	2	43	0	0	0	0
+LFQ	224	0	0	0	0	0	0	0	0	0	0	0	0	2	9	11	6	0	0	0	0	0	0	0	0	4	3	3	0	0	0	0	1	2	15	1	0	1	42	0	0	0	0
+LFQ	225	0	0	0	0	0	0	0	0	0	0	0	0	4	8	2	4	0	0	0	0	0	0	0	0	7	3	10	0	2	0	0	0	3	10	1	2	5	39	0	0	0	0
+LFQ	226	0	0	0	0	0	0	0	0	0	0	0	0	5	9	3	7	0	0	0	0	0	0	0	0	8	5	5	0	1	0	2	1	3	13	0	2	3	33	0	0	0	0
+LFQ	227	0	0	0	0	0	0	0	0	0	0	0	0	10	8	4	5	0	0	0	0	0	0	0	0	3	2	3	0	0	0	2	3	5	17	0	3	2	33	0	0	0	0
+LFQ	228	0	0	0	0	0	0	0	0	0	0	0	0	10	8	6	2	0	0	0	0	0	0	0	0	6	1	6	0	1	2	1	1	4	13	1	2	1	35	0	0	0	0
+LFQ	229	0	0	0	0	0	0	0	0	0	0	0	0	4	11	6	6	0	0	0	0	0	0	0	0	1	3	5	0	0	0	0	2	6	13	0	3	5	35	0	0	0	0
+LFQ	230	0	0	0	0	0	0	0	0	0	0	0	0	4	11	10	7	0	0	0	0	0	0	0	0	2	3	4	0	0	0	1	2	9	10	0	1	1	35	0	0	0	0
+LFQ	231	0	0	0	0	0	0	0	0	0	0	0	0	6	7	6	6	0	0	0	0	0	0	0	0	4	5	4	0	1	0	1	0	4	13	1	5	5	32	0	0	0	0
+LFQ	232	0	0	0	0	0	0	0	0	0	0	0	0	3	7	10	4	0	0	0	0	0	0	0	0	6	4	7	0	0	0	0	0	3	12	0	1	3	40	0	0	0	0
+LFQ	233	0	0	0	0	0	0	0	0	0	0	0	0	7	7	9	8	0	0	0	0	0	0	0	0	5	5	3	1	1	0	0	0	6	10	1	1	4	32	0	0	0	0
+LFQ	234	0	0	0	0	0	0	0	0	0	0	0	0	9	6	10	5	0	0	0	0	0	0	0	0	5	5	3	1	0	0	0	1	5	11	0	1	4	34	0	0	0	0
+LFQ	235	0	0	0	0	0	0	0	0	0	0	0	0	4	10	13	7	0	0	0	0	0	0	0	0	5	1	4	0	0	0	2	1	5	7	0	0	4	37	0	0	0	0
+LFQ	236	0	0	0	0	0	0	0	0	0	0	0	0	7	8	15	6	0	0	0	0	0	0	0	0	7	3	5	1	0	0	0	1	6	8	0	1	1	31	0	0	0	0
+LFQ	237	0	0	0	0	0	0	0	0	0	0	0	0	2	9	13	6	0	0	0	0	0	0	0	0	6	4	7	1	0	0	0	1	3	12	0	1	1	34	0	0	0	0
+LFQ	238	0	0	0	0	0	0	0	0	0	0	0	0	2	10	16	6	0	0	0	0	0	0	0	0	9	2	3	0	0	0	0	0	5	9	0	2	3	33	0	0	0	0
+LFQ	239	0	0	0	0	0	0	0	0	0	0	0	0	4	5	17	9	0	0	0	0	0	0	0	0	7	3	1	0	0	0	1	1	2	15	0	1	3	31	0	0	0	0
+LFQ	240	0	0	0	0	0	0	0	0	0	0	0	0	0	10	19	6	0	0	0	0	0	0	0	0	6	4	4	0	0	1	3	0	2	13	0	1	1	30	0	0	0	0
+LFQ	241	0	0	0	0	0	0	0	0	0	0	0	0	1	4	23	9	0	0	0	0	0	0	0	0	7	5	8	1	0	0	2	1	1	8	0	1	3	26	0	0	0	0
+LFQ	242	0	0	0	0	0	0	0	0	0	0	0	0	3	10	19	10	0	0	0	0	0	0	0	0	2	5	4	1	0	0	0	1	2	10	0	0	2	31	0	0	0	0
+LFQ	243	0	0	0	0	0	0	0	0	0	0	0	0	2	2	17	14	0	0	0	0	0	0	0	0	6	5	5	0	0	0	0	0	6	13	0	2	3	25	0	0	0	0
+LFQ	244	0	0	0	0	0	0	0	0	0	0	0	0	1	3	18	11	0	0	0	0	0	0	0	0	6	5	5	1	0	0	1	0	2	12	0	5	1	29	0	0	0	0
+LFQ	245	0	0	0	0	0	0	0	0	0	0	0	0	1	8	14	11	0	0	0	0	0	0	0	0	8	5	3	1	0	0	1	0	1	15	1	1	3	27	0	0	0	0
+LFQ	246	0	0	0	0	0	0	0	0	0	0	0	0	4	6	15	12	0	0	0	0	0	0	0	0	5	2	8	1	0	1	1	0	1	13	0	2	1	28	0	0	0	0
+LFQ	247	0	0	0	0	0	0	0	0	0	0	0	0	8	3	16	14	0	0	0	0	0	0	0	0	10	4	6	0	0	0	0	0	2	15	1	2	2	17	0	0	0	0
+LFQ	248	0	0	0	0	0	0	0	0	0	0	0	0	5	6	21	8	0	0	0	0	0	0	0	0	7	8	6	2	0	0	0	1	1	14	0	2	2	17	0	0	0	0
+LFQ	249	0	0	0	0	0	0	0	0	0	0	0	0	5	6	20	8	0	0	0	0	0	0	0	0	5	7	10	0	1	0	0	0	1	15	0	2	0	20	0	0	0	0
+LFQ	250	0	0	0	0	0	0	0	0	0	0	0	0	2	10	15	10	0	0	0	0	0	0	0	0	9	5	8	1	0	0	0	2	6	10	0	0	2	20	0	0	0	0
+LFQ	251	0	0	0	0	0	0	0	0	0	0	0	0	7	20	21	17	0	0	0	0	0	0	0	0	7	7	6	0	0	0	0	1	2	4	0	0	0	8	0	0	0	0
+# Mismatches per cycle and quality. Use `grep ^MPC | cut -f 2-` to extract this part.
+# Columns correspond to qualities, rows to cycles. First column is the cycle number, second
+# is the number of N's and the rest is the number of mismatches
+MPC	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0
+MPC	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0
+MPC	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0
+MPC	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0
+MPC	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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+MPC	194	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	195	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	196	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	197	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	198	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	199	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	200	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	201	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	202	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	203	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	204	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	205	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	206	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	207	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	208	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	209	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	210	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	211	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	212	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	213	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	215	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	216	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	217	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	218	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	219	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	220	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	221	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	222	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	223	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	224	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	225	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	226	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	227	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	228	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	229	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	230	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	231	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	232	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
+MPC	233	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+MPC	234	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+MPC	235	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	236	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+MPC	237	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+MPC	238	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	239	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+MPC	240	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	241	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	242	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+MPC	243	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	244	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	245	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	246	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	247	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0
+MPC	248	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	2	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	2	0	0	0	3	0	0	0
+MPC	249	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	2	0	5	0	0	0	0	0	0	2	0	0	0	0	0	0	0
+MPC	250	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	0	0	0	2	0	0	0
+MPC	251	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	3	0	0	0
+MPC	252	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
+GCF	21.86	0
+GCF	44.22	2
+GCF	44.97	8
+GCF	45.48	4
+GCF	45.98	3
+GCF	46.48	5
+GCF	46.98	2
+GCF	47.49	3
+GCF	47.99	12
+GCF	48.49	13
+GCF	48.99	9
+GCF	49.50	2
+GCF	50.25	3
+GCF	51.01	6
+GCF	51.51	4
+GCF	52.01	1
+GCF	52.51	0
+GCF	53.02	1
+# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
+GCL	21.86	0
+GCL	44.22	2
+GCL	44.97	8
+GCL	45.48	4
+GCL	45.98	3
+GCL	46.48	5
+GCL	46.98	2
+GCL	47.49	3
+GCL	47.99	12
+GCL	48.49	13
+GCL	48.99	9
+GCL	49.50	2
+GCL	50.25	3
+GCL	51.01	6
+GCL	51.51	4
+GCL	52.01	1
+GCL	52.51	0
+GCL	53.02	1
+# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+GCC	1	21.94	30.10	34.18	13.78	2.04	0.00
+GCC	2	30.00	16.00	11.00	43.00	0.00	0.00
+GCC	3	33.00	25.00	9.00	33.00	0.00	0.00
+GCC	4	17.00	29.00	13.00	41.00	0.00	0.00
+GCC	5	37.00	22.00	12.00	29.00	0.00	0.00
+GCC	6	36.00	26.00	17.00	21.00	0.00	0.00
+GCC	7	29.50	13.50	31.50	25.50	0.00	0.00
+GCC	8	50.50	14.50	19.50	15.50	0.00	0.00
+GCC	9	17.00	33.00	18.00	32.00	0.00	0.00
+GCC	10	37.00	14.00	21.00	28.00	0.00	0.00
+GCC	11	20.50	14.50	29.50	35.50	0.00	0.00
+GCC	12	30.00	24.00	22.00	24.00	0.00	0.00
+GCC	13	27.00	15.00	21.00	37.00	0.00	0.00
+GCC	14	24.24	22.22	26.26	27.27	1.01	0.00
+GCC	15	25.50	20.50	24.50	29.50	0.00	0.00
+GCC	16	31.00	15.00	20.00	34.00	0.00	0.00
+GCC	17	28.00	25.00	14.00	33.00	0.00	0.00
+GCC	18	30.50	28.50	19.50	21.50	0.00	0.00
+GCC	19	29.00	26.00	21.00	24.00	0.00	0.00
+GCC	20	22.50	23.50	17.50	36.50	0.00	0.00
+GCC	21	35.50	17.50	19.50	27.50	0.00	0.00
+GCC	22	37.50	28.50	15.50	18.50	0.00	0.00
+GCC	23	31.31	19.19	13.13	36.36	1.01	0.00
+GCC	24	37.00	12.00	22.00	29.00	0.00	0.00
+GCC	25	35.50	22.50	17.50	24.50	0.00	0.00
+GCC	26	33.50	18.50	15.50	32.50	0.00	0.00
+GCC	27	34.50	14.50	25.50	25.50	0.00	0.00
+GCC	28	31.00	14.00	24.00	31.00	0.00	0.00
+GCC	29	30.00	27.00	24.00	19.00	0.00	0.00
+GCC	30	31.00	20.00	14.00	35.00	0.00	0.00
+GCC	31	33.50	29.50	13.50	23.50	0.00	0.00
+GCC	32	42.50	20.50	19.50	17.50	0.00	0.00
+GCC	33	25.50	23.50	14.50	36.50	0.00	0.00
+GCC	34	39.50	16.50	20.50	23.50	0.00	0.00
+GCC	35	32.50	23.50	21.50	22.50	0.00	0.00
+GCC	36	42.00	25.00	16.00	17.00	0.00	0.00
+GCC	37	38.00	17.00	19.00	26.00	0.00	0.00
+GCC	38	24.00	26.00	25.00	25.00	0.00	0.00
+GCC	39	22.50	41.50	18.50	17.50	0.00	0.00
+GCC	40	32.00	16.00	21.00	31.00	0.00	0.00
+GCC	41	33.00	28.00	19.00	20.00	0.00	0.00
+GCC	42	30.50	25.50	19.50	24.50	0.00	0.00
+GCC	43	35.00	29.00	15.00	21.00	0.00	0.00
+GCC	44	20.00	27.00	22.00	31.00	0.00	0.00
+GCC	45	40.50	21.50	21.50	16.50	0.00	0.00
+GCC	46	26.50	20.50	22.50	30.50	0.00	0.00
+GCC	47	38.50	29.50	16.50	15.50	0.00	0.00
+GCC	48	27.50	24.50	17.50	30.50	0.00	0.00
+GCC	49	28.50	32.50	10.50	28.50	0.00	0.00
+GCC	50	46.50	20.50	9.50	23.50	0.00	0.00
+GCC	51	34.50	28.50	13.50	23.50	0.00	0.00
+GCC	52	41.50	23.50	20.50	14.50	0.00	0.00
+GCC	53	20.00	28.00	26.00	26.00	0.00	0.00
+GCC	54	31.50	18.50	24.50	25.50	0.00	0.00
+GCC	55	30.50	22.50	16.50	30.50	0.00	0.00
+GCC	56	33.50	22.50	13.50	30.50	0.00	0.00
+GCC	57	23.00	24.00	23.00	30.00	0.00	0.00
+GCC	58	25.00	37.00	19.00	19.00	0.00	0.00
+GCC	59	34.00	23.00	24.00	19.00	0.00	0.00
+GCC	60	29.00	28.00	17.00	26.00	0.00	0.00
+GCC	61	25.50	23.50	24.50	26.50	0.00	0.00
+GCC	62	31.50	22.50	16.50	29.50	0.00	0.00
+GCC	63	27.50	28.50	25.50	18.50	0.00	0.00
+GCC	64	33.50	21.50	25.50	19.50	0.00	0.00
+GCC	65	35.50	19.50	18.50	26.50	0.00	0.00
+GCC	66	34.00	25.00	15.00	26.00	0.00	0.00
+GCC	67	37.00	23.00	19.00	21.00	0.00	0.00
+GCC	68	36.50	29.50	13.50	20.50	0.00	0.00
+GCC	69	38.50	19.50	20.50	21.50	0.00	0.00
+GCC	70	38.50	16.50	18.50	26.50	0.00	0.00
+GCC	71	25.50	38.50	21.50	14.50	0.00	0.00
+GCC	72	29.00	29.00	25.00	17.00	0.00	0.00
+GCC	73	32.50	20.50	21.50	25.50	0.00	0.00
+GCC	74	28.50	32.50	12.50	26.50	0.00	0.00
+GCC	75	41.50	12.50	18.50	27.50	0.00	0.00
+GCC	76	24.50	29.50	23.50	22.50	0.00	0.00
+GCC	77	36.00	21.00	18.00	25.00	0.00	0.00
+GCC	78	27.00	34.00	22.00	17.00	0.00	0.00
+GCC	79	21.50	26.50	25.50	26.50	0.00	0.00
+GCC	80	34.00	19.00	28.00	19.00	0.00	0.00
+GCC	81	17.00	26.00	26.00	31.00	0.00	0.00
+GCC	82	31.00	30.00	23.00	16.00	0.00	0.00
+GCC	83	31.50	26.50	12.50	29.50	0.00	0.00
+GCC	84	19.00	41.00	21.00	19.00	0.00	0.00
+GCC	85	37.50	24.50	16.50	21.50	0.00	0.00
+GCC	86	15.00	48.00	15.00	22.00	0.00	0.00
+GCC	87	41.00	16.00	18.00	25.00	0.00	0.00
+GCC	88	23.50	27.50	27.50	21.50	0.00	0.00
+GCC	89	26.50	27.50	26.50	19.50	0.00	0.00
+GCC	90	18.50	23.50	24.50	33.50	0.00	0.00
+GCC	91	27.00	32.00	22.00	19.00	0.00	0.00
+GCC	92	23.50	17.50	27.50	31.50	0.00	0.00
+GCC	93	25.50	37.50	15.50	21.50	0.00	0.00
+GCC	94	27.00	17.00	24.00	32.00	0.00	0.00
+GCC	95	26.77	37.88	14.65	20.71	1.01	0.00
+GCC	96	29.50	25.50	16.50	28.50	0.00	0.00
+GCC	97	29.00	31.00	21.00	19.00	0.00	0.00
+GCC	98	18.18	33.33	22.22	26.26	1.01	0.00
+GCC	99	24.50	33.50	24.50	17.50	0.00	0.00
+GCC	100	24.50	16.50	24.50	34.50	0.00	0.00
+GCC	101	25.00	40.00	19.00	16.00	0.00	0.00
+GCC	102	17.50	17.50	32.50	32.50	0.00	0.00
+GCC	103	31.00	26.00	16.00	27.00	0.00	0.00
+GCC	104	26.50	29.50	20.50	23.50	0.00	0.00
+GCC	105	34.00	33.00	21.00	12.00	0.00	0.00
+GCC	106	23.00	31.00	26.00	20.00	0.00	0.00
+GCC	107	17.68	35.86	23.74	22.73	1.01	0.00
+GCC	108	24.75	30.81	23.74	20.71	1.01	0.00
+GCC	109	17.00	31.00	22.00	30.00	0.00	0.00
+GCC	110	16.16	35.35	24.24	24.24	1.01	0.00
+GCC	111	24.24	32.32	23.23	20.20	1.01	0.00
+GCC	112	37.37	28.28	16.16	18.18	1.01	0.00
+GCC	113	19.70	22.73	32.83	24.75	1.01	0.00
+GCC	114	17.00	31.00	35.00	17.00	0.00	0.00
+GCC	115	29.50	24.50	23.50	22.50	0.00	0.00
+GCC	116	22.00	30.00	34.00	14.00	0.00	0.00
+GCC	117	27.00	23.00	19.00	31.00	0.00	0.00
+GCC	118	25.50	14.50	34.50	25.50	0.00	0.00
+GCC	119	22.50	34.50	20.50	22.50	0.00	0.00
+GCC	120	17.50	24.50	26.50	31.50	0.00	0.00
+GCC	121	27.78	33.84	22.73	15.66	1.01	0.00
+GCC	122	17.00	23.00	25.00	35.00	0.00	0.00
+GCC	123	23.50	46.50	11.50	18.50	0.00	0.00
+GCC	124	9.00	32.00	34.00	25.00	0.00	0.00
+GCC	125	24.00	27.00	19.00	30.00	0.00	0.00
+GCC	126	26.00	17.00	28.00	29.00	0.00	0.00
+GCC	127	26.50	16.50	21.50	35.50	0.00	0.00
+GCC	128	18.00	34.00	31.00	17.00	0.00	0.00
+GCC	129	25.50	25.50	27.50	21.50	0.00	0.00
+GCC	130	25.00	20.00	22.00	33.00	0.00	0.00
+GCC	131	17.50	39.50	24.50	18.50	0.00	0.00
+GCC	132	21.00	28.00	23.00	28.00	0.00	0.00
+GCC	133	13.50	31.50	35.50	19.50	0.00	0.00
+GCC	134	24.50	19.50	30.50	25.50	0.00	0.00
+GCC	135	16.50	23.50	30.50	29.50	0.00	0.00
+GCC	136	28.00	32.00	15.00	25.00	0.00	0.00
+GCC	137	22.50	21.50	30.50	25.50	0.00	0.00
+GCC	138	14.50	34.50	24.50	26.50	0.00	0.00
+GCC	139	20.50	29.50	24.50	25.50	0.00	0.00
+GCC	140	17.00	23.00	30.00	30.00	0.00	0.00
+GCC	141	20.50	23.50	25.50	30.50	0.00	0.00
+GCC	142	18.00	29.00	38.00	15.00	0.00	0.00
+GCC	143	22.00	24.00	27.00	27.00	0.00	0.00
+GCC	144	21.50	30.50	26.50	21.50	0.00	0.00
+GCC	145	22.00	21.00	29.00	28.00	0.00	0.00
+GCC	146	25.00	16.00	39.00	20.00	0.00	0.00
+GCC	147	26.50	22.50	30.50	20.50	0.00	0.00
+GCC	148	12.50	28.50	36.50	22.50	0.00	0.00
+GCC	149	26.50	23.50	23.50	26.50	0.00	0.00
+GCC	150	14.00	29.00	24.00	33.00	0.00	0.00
+GCC	151	19.50	30.50	32.50	17.50	0.00	0.00
+GCC	152	18.50	17.50	29.50	34.50	0.00	0.00
+GCC	153	22.50	22.50	31.50	23.50	0.00	0.00
+GCC	154	22.00	21.00	29.00	28.00	0.00	0.00
+GCC	155	21.00	26.00	19.00	34.00	0.00	0.00
+GCC	156	14.50	23.50	35.50	26.50	0.00	0.00
+GCC	157	22.00	31.00	23.00	24.00	0.00	0.00
+GCC	158	22.50	29.50	24.50	23.50	0.00	0.00
+GCC	159	17.50	12.50	46.50	23.50	0.00	0.00
+GCC	160	24.50	26.50	26.50	22.50	0.00	0.00
+GCC	161	13.00	23.00	45.00	19.00	0.00	0.00
+GCC	162	31.50	16.50	22.50	29.50	0.00	0.00
+GCC	163	19.50	21.50	35.50	23.50	0.00	0.00
+GCC	164	29.00	18.00	21.00	32.00	0.00	0.00
+GCC	165	14.50	17.50	35.50	32.50	0.00	0.00
+GCC	166	17.50	37.50	28.50	16.50	0.00	0.00
+GCC	167	16.50	21.50	31.50	30.50	0.00	0.00
+GCC	168	14.00	25.00	30.00	31.00	0.00	0.00
+GCC	169	18.50	20.50	23.50	37.50	0.00	0.00
+GCC	170	19.00	23.00	28.00	30.00	0.00	0.00
+GCC	171	20.00	28.00	33.00	19.00	0.00	0.00
+GCC	172	19.00	20.00	32.00	29.00	0.00	0.00
+GCC	173	24.50	16.50	33.50	25.50	0.00	0.00
+GCC	174	17.50	23.50	33.50	25.50	0.00	0.00
+GCC	175	33.50	17.50	35.50	13.50	0.00	0.00
+GCC	176	16.50	32.50	28.50	22.50	0.00	0.00
+GCC	177	19.00	22.00	27.00	32.00	0.00	0.00
+GCC	178	16.00	26.00	30.00	28.00	0.00	0.00
+GCC	179	18.00	18.00	22.00	42.00	0.00	0.00
+GCC	180	21.00	22.00	34.00	23.00	0.00	0.00
+GCC	181	20.50	19.50	35.50	24.50	0.00	0.00
+GCC	182	32.50	18.50	22.50	26.50	0.00	0.00
+GCC	183	24.50	13.50	28.50	33.50	0.00	0.00
+GCC	184	15.00	29.00	30.00	26.00	0.00	0.00
+GCC	185	15.00	32.00	33.00	20.00	0.00	0.00
+GCC	186	22.50	23.50	34.50	19.50	0.00	0.00
+GCC	187	19.00	14.00	40.00	27.00	0.00	0.00
+GCC	188	27.50	21.50	27.50	23.50	0.00	0.00
+GCC	189	17.00	22.00	34.00	27.00	0.00	0.00
+GCC	190	23.00	30.00	23.00	24.00	0.00	0.00
+GCC	191	25.00	22.00	28.00	25.00	0.00	0.00
+GCC	192	34.50	24.50	13.50	27.50	0.00	0.00
+GCC	193	18.50	25.50	25.50	30.50	0.00	0.00
+GCC	194	18.50	33.50	24.50	23.50	0.00	0.00
+GCC	195	16.00	26.00	23.00	35.00	0.00	0.00
+GCC	196	21.50	25.50	24.50	28.50	0.00	0.00
+GCC	197	20.00	21.00	23.00	36.00	0.00	0.00
+GCC	198	17.00	21.00	37.00	25.00	0.00	0.00
+GCC	199	20.50	18.50	25.50	35.50	0.00	0.00
+GCC	200	21.00	29.00	21.00	29.00	0.00	0.00
+GCC	201	27.00	21.00	23.00	29.00	0.00	0.00
+GCC	202	21.50	24.50	19.50	34.50	0.00	0.00
+GCC	203	21.50	24.50	26.50	27.50	0.00	0.00
+GCC	204	27.00	29.00	24.00	20.00	0.00	0.00
+GCC	205	19.50	21.50	22.50	36.50	0.00	0.00
+GCC	206	26.50	24.50	21.50	27.50	0.00	0.00
+GCC	207	22.50	21.50	19.50	36.50	0.00	0.00
+GCC	208	14.00	35.00	29.00	22.00	0.00	0.00
+GCC	209	16.00	23.00	12.00	49.00	0.00	0.00
+GCC	210	18.50	19.50	40.50	21.50	0.00	0.00
+GCC	211	26.00	20.00	22.00	32.00	0.00	0.00
+GCC	212	21.00	31.00	18.00	30.00	0.00	0.00
+GCC	213	24.00	15.00	31.00	30.00	0.00	0.00
+GCC	214	17.50	24.50	25.50	32.50	0.00	0.00
+GCC	215	26.00	24.00	23.00	27.00	0.00	0.00
+GCC	216	21.50	17.50	25.50	35.50	0.00	0.00
+GCC	217	26.00	29.00	17.00	28.00	0.00	0.00
+GCC	218	20.00	27.00	21.00	32.00	0.00	0.00
+GCC	219	17.00	21.00	21.00	41.00	0.00	0.00
+GCC	220	25.50	23.50	23.50	27.50	0.00	0.00
+GCC	221	21.50	23.50	20.50	34.50	0.00	0.00
+GCC	222	21.50	21.50	18.50	38.50	0.00	0.00
+GCC	223	20.00	27.00	28.00	25.00	0.00	0.00
+GCC	224	22.50	22.50	24.50	30.50	0.00	0.00
+GCC	225	14.50	35.50	30.50	19.50	0.00	0.00
+GCC	226	20.00	23.00	26.00	31.00	0.00	0.00
+GCC	227	20.50	24.50	23.50	31.50	0.00	0.00
+GCC	228	33.00	19.00	26.00	22.00	0.00	0.00
+GCC	229	22.50	24.50	18.50	34.50	0.00	0.00
+GCC	230	21.00	32.00	16.00	31.00	0.00	0.00
+GCC	231	23.00	28.00	30.00	19.00	0.00	0.00
+GCC	232	23.50	21.50	12.50	42.50	0.00	0.00
+GCC	233	21.00	27.00	25.00	27.00	0.00	0.00
+GCC	234	16.50	27.50	22.50	33.50	0.00	0.00
+GCC	235	20.00	15.00	28.00	37.00	0.00	0.00
+GCC	236	28.00	23.00	21.00	28.00	0.00	0.00
+GCC	237	20.50	19.50	22.50	37.50	0.00	0.00
+GCC	238	21.50	29.50	24.50	24.50	0.00	0.00
+GCC	239	20.00	8.00	17.00	55.00	0.00	0.00
+GCC	240	28.00	24.00	16.00	32.00	0.00	0.00
+GCC	241	22.50	22.50	16.50	38.50	0.00	0.00
+GCC	242	29.00	25.00	13.00	33.00	0.00	0.00
+GCC	243	22.50	15.50	23.50	38.50	0.00	0.00
+GCC	244	20.50	23.50	16.50	39.50	0.00	0.00
+GCC	245	28.00	23.00	19.00	30.00	0.00	0.00
+GCC	246	21.00	29.00	25.00	25.00	0.00	0.00
+GCC	247	32.00	14.00	13.00	41.00	0.00	0.00
+GCC	248	18.00	18.00	25.00	39.00	0.00	0.00
+GCC	249	25.00	23.00	21.00	31.00	0.00	0.00
+GCC	250	27.50	22.50	17.50	32.50	0.00	0.00
+GCC	251	13.50	20.50	36.50	29.50	0.00	0.00
+# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+FBC	1	21.43	27.55	36.73	14.29	2.04	0.00
+FBC	2	34.00	15.00	12.00	39.00	0.00	0.00
+FBC	3	32.00	25.00	9.00	34.00	0.00	0.00
+FBC	4	21.00	26.00	16.00	37.00	0.00	0.00
+FBC	5	37.00	20.00	14.00	29.00	0.00	0.00
+FBC	6	28.00	26.00	17.00	29.00	0.00	0.00
+FBC	7	31.00	14.00	31.00	24.00	0.00	0.00
+FBC	8	52.00	13.00	21.00	14.00	0.00	0.00
+FBC	9	15.00	31.00	20.00	34.00	0.00	0.00
+FBC	10	39.00	15.00	20.00	26.00	0.00	0.00
+FBC	11	23.00	14.00	30.00	33.00	0.00	0.00
+FBC	12	32.00	24.00	22.00	22.00	0.00	0.00
+FBC	13	25.00	13.00	23.00	39.00	0.00	0.00
+FBC	14	27.27	20.20	28.28	24.24	1.01	0.00
+FBC	15	28.00	21.00	24.00	27.00	0.00	0.00
+FBC	16	27.00	15.00	20.00	38.00	0.00	0.00
+FBC	17	27.00	24.00	15.00	34.00	0.00	0.00
+FBC	18	30.00	27.00	21.00	22.00	0.00	0.00
+FBC	19	28.00	26.00	21.00	25.00	0.00	0.00
+FBC	20	22.00	26.00	15.00	37.00	0.00	0.00
+FBC	21	35.00	17.00	20.00	28.00	0.00	0.00
+FBC	22	36.00	26.00	18.00	20.00	0.00	0.00
+FBC	23	32.32	17.17	15.15	35.35	1.01	0.00
+FBC	24	38.00	10.00	24.00	28.00	0.00	0.00
+FBC	25	33.00	22.00	18.00	27.00	0.00	0.00
+FBC	26	31.00	16.00	18.00	35.00	0.00	0.00
+FBC	27	37.00	11.00	29.00	23.00	0.00	0.00
+FBC	28	32.00	15.00	23.00	30.00	0.00	0.00
+FBC	29	30.00	26.00	25.00	19.00	0.00	0.00
+FBC	30	28.00	19.00	15.00	38.00	0.00	0.00
+FBC	31	34.00	30.00	13.00	23.00	0.00	0.00
+FBC	32	47.00	21.00	19.00	13.00	0.00	0.00
+FBC	33	24.00	24.00	14.00	38.00	0.00	0.00
+FBC	34	36.00	16.00	21.00	27.00	0.00	0.00
+FBC	35	30.00	24.00	21.00	25.00	0.00	0.00
+FBC	36	43.00	25.00	16.00	16.00	0.00	0.00
+FBC	37	38.00	16.00	20.00	26.00	0.00	0.00
+FBC	38	25.00	26.00	25.00	24.00	0.00	0.00
+FBC	39	23.00	42.00	18.00	17.00	0.00	0.00
+FBC	40	35.00	18.00	19.00	28.00	0.00	0.00
+FBC	41	37.00	29.00	18.00	16.00	0.00	0.00
+FBC	42	32.00	24.00	21.00	23.00	0.00	0.00
+FBC	43	32.00	30.00	14.00	24.00	0.00	0.00
+FBC	44	19.00	28.00	21.00	32.00	0.00	0.00
+FBC	45	43.00	18.00	25.00	14.00	0.00	0.00
+FBC	46	26.00	20.00	23.00	31.00	0.00	0.00
+FBC	47	37.00	31.00	15.00	17.00	0.00	0.00
+FBC	48	30.00	27.00	15.00	28.00	0.00	0.00
+FBC	49	31.00	32.00	11.00	26.00	0.00	0.00
+FBC	50	44.00	21.00	9.00	26.00	0.00	0.00
+FBC	51	40.00	28.00	14.00	18.00	0.00	0.00
+FBC	52	40.00	25.00	19.00	16.00	0.00	0.00
+FBC	53	21.00	29.00	25.00	25.00	0.00	0.00
+FBC	54	38.00	19.00	24.00	19.00	0.00	0.00
+FBC	55	29.00	23.00	16.00	32.00	0.00	0.00
+FBC	56	31.00	25.00	11.00	33.00	0.00	0.00
+FBC	57	18.00	24.00	23.00	35.00	0.00	0.00
+FBC	58	27.00	35.00	21.00	17.00	0.00	0.00
+FBC	59	35.00	25.00	22.00	18.00	0.00	0.00
+FBC	60	28.00	30.00	15.00	27.00	0.00	0.00
+FBC	61	28.00	24.00	24.00	24.00	0.00	0.00
+FBC	62	28.00	26.00	13.00	33.00	0.00	0.00
+FBC	63	29.00	32.00	22.00	17.00	0.00	0.00
+FBC	64	37.00	23.00	24.00	16.00	0.00	0.00
+FBC	65	33.00	22.00	16.00	29.00	0.00	0.00
+FBC	66	35.00	24.00	16.00	25.00	0.00	0.00
+FBC	67	39.00	25.00	17.00	19.00	0.00	0.00
+FBC	68	34.00	31.00	12.00	23.00	0.00	0.00
+FBC	69	39.00	21.00	19.00	21.00	0.00	0.00
+FBC	70	37.00	20.00	15.00	28.00	0.00	0.00
+FBC	71	22.00	36.00	24.00	18.00	0.00	0.00
+FBC	72	25.00	32.00	22.00	21.00	0.00	0.00
+FBC	73	34.00	23.00	19.00	24.00	0.00	0.00
+FBC	74	26.00	33.00	12.00	29.00	0.00	0.00
+FBC	75	37.00	15.00	16.00	32.00	0.00	0.00
+FBC	76	26.00	31.00	22.00	21.00	0.00	0.00
+FBC	77	37.00	22.00	17.00	24.00	0.00	0.00
+FBC	78	25.00	38.00	18.00	19.00	0.00	0.00
+FBC	79	19.00	28.00	24.00	29.00	0.00	0.00
+FBC	80	28.00	20.00	27.00	25.00	0.00	0.00
+FBC	81	16.00	26.00	26.00	32.00	0.00	0.00
+FBC	82	32.00	35.00	18.00	15.00	0.00	0.00
+FBC	83	27.00	28.00	11.00	34.00	0.00	0.00
+FBC	84	16.00	43.00	19.00	22.00	0.00	0.00
+FBC	85	33.00	29.00	12.00	26.00	0.00	0.00
+FBC	86	18.00	49.00	14.00	19.00	0.00	0.00
+FBC	87	37.00	17.00	17.00	29.00	0.00	0.00
+FBC	88	21.00	31.00	24.00	24.00	0.00	0.00
+FBC	89	27.00	30.00	24.00	19.00	0.00	0.00
+FBC	90	13.00	25.00	23.00	39.00	0.00	0.00
+FBC	91	25.00	34.00	20.00	21.00	0.00	0.00
+FBC	92	25.00	22.00	23.00	30.00	0.00	0.00
+FBC	93	22.00	35.00	18.00	25.00	0.00	0.00
+FBC	94	24.00	18.00	23.00	35.00	0.00	0.00
+FBC	95	22.22	40.40	12.12	25.25	1.01	0.00
+FBC	96	25.00	24.00	18.00	33.00	0.00	0.00
+FBC	97	26.00	35.00	17.00	22.00	0.00	0.00
+FBC	98	15.15	35.35	20.20	29.29	1.01	0.00
+FBC	99	22.00	30.00	28.00	20.00	0.00	0.00
+FBC	100	20.00	18.00	23.00	39.00	0.00	0.00
+FBC	101	23.00	46.00	13.00	18.00	0.00	0.00
+FBC	102	15.00	21.00	29.00	35.00	0.00	0.00
+FBC	103	30.00	26.00	16.00	28.00	0.00	0.00
+FBC	104	23.00	31.00	19.00	27.00	0.00	0.00
+FBC	105	33.00	31.00	23.00	13.00	0.00	0.00
+FBC	106	24.00	30.00	27.00	19.00	0.00	0.00
+FBC	107	16.16	38.38	21.21	24.24	1.01	0.00
+FBC	108	22.22	28.28	26.26	23.23	1.01	0.00
+FBC	109	15.00	33.00	20.00	32.00	0.00	0.00
+FBC	110	12.12	39.39	20.20	28.28	1.01	0.00
+FBC	111	23.23	31.31	24.24	21.21	1.01	0.00
+FBC	112	35.35	28.28	16.16	20.20	1.01	0.00
+FBC	113	18.18	21.21	34.34	26.26	1.01	0.00
+FBC	114	15.00	31.00	35.00	19.00	0.00	0.00
+FBC	115	27.00	26.00	22.00	25.00	0.00	0.00
+FBC	116	24.00	31.00	33.00	12.00	0.00	0.00
+FBC	117	23.00	25.00	17.00	35.00	0.00	0.00
+FBC	118	26.00	15.00	34.00	25.00	0.00	0.00
+FBC	119	24.00	38.00	17.00	21.00	0.00	0.00
+FBC	120	16.00	25.00	26.00	33.00	0.00	0.00
+FBC	121	31.31	31.31	25.25	12.12	1.01	0.00
+FBC	122	16.00	21.00	27.00	36.00	0.00	0.00
+FBC	123	22.00	45.00	13.00	20.00	0.00	0.00
+FBC	124	8.00	33.00	33.00	26.00	0.00	0.00
+FBC	125	21.00	30.00	16.00	33.00	0.00	0.00
+FBC	126	28.00	15.00	30.00	27.00	0.00	0.00
+FBC	127	27.00	17.00	21.00	35.00	0.00	0.00
+FBC	128	20.00	33.00	32.00	15.00	0.00	0.00
+FBC	129	27.00	24.00	29.00	20.00	0.00	0.00
+FBC	130	25.00	21.00	21.00	33.00	0.00	0.00
+FBC	131	18.00	39.00	25.00	18.00	0.00	0.00
+FBC	132	22.00	29.00	22.00	27.00	0.00	0.00
+FBC	133	12.00	29.00	38.00	21.00	0.00	0.00
+FBC	134	27.00	20.00	30.00	23.00	0.00	0.00
+FBC	135	16.00	19.00	35.00	30.00	0.00	0.00
+FBC	136	31.00	31.00	16.00	22.00	0.00	0.00
+FBC	137	24.00	21.00	31.00	24.00	0.00	0.00
+FBC	138	14.00	39.00	20.00	27.00	0.00	0.00
+FBC	139	22.00	27.00	27.00	24.00	0.00	0.00
+FBC	140	15.00	22.00	31.00	32.00	0.00	0.00
+FBC	141	20.00	23.00	26.00	31.00	0.00	0.00
+FBC	142	19.00	26.00	41.00	14.00	0.00	0.00
+FBC	143	21.00	25.00	26.00	28.00	0.00	0.00
+FBC	144	23.00	28.00	29.00	20.00	0.00	0.00
+FBC	145	24.00	16.00	34.00	26.00	0.00	0.00
+FBC	146	24.00	17.00	38.00	21.00	0.00	0.00
+FBC	147	30.00	22.00	31.00	17.00	0.00	0.00
+FBC	148	13.00	25.00	40.00	22.00	0.00	0.00
+FBC	149	26.00	23.00	24.00	27.00	0.00	0.00
+FBC	150	16.00	26.00	27.00	31.00	0.00	0.00
+FBC	151	17.00	32.00	31.00	20.00	0.00	0.00
+FBC	152	21.00	14.00	33.00	32.00	0.00	0.00
+FBC	153	21.00	25.00	29.00	25.00	0.00	0.00
+FBC	154	19.00	20.00	30.00	31.00	0.00	0.00
+FBC	155	21.00	24.00	21.00	34.00	0.00	0.00
+FBC	156	13.00	24.00	35.00	28.00	0.00	0.00
+FBC	157	21.00	28.00	26.00	25.00	0.00	0.00
+FBC	158	24.00	26.00	28.00	22.00	0.00	0.00
+FBC	159	16.00	10.00	49.00	25.00	0.00	0.00
+FBC	160	25.00	22.00	31.00	22.00	0.00	0.00
+FBC	161	13.00	18.00	50.00	19.00	0.00	0.00
+FBC	162	30.00	14.00	25.00	31.00	0.00	0.00
+FBC	163	16.00	17.00	40.00	27.00	0.00	0.00
+FBC	164	25.00	17.00	22.00	36.00	0.00	0.00
+FBC	165	16.00	19.00	34.00	31.00	0.00	0.00
+FBC	166	15.00	39.00	27.00	19.00	0.00	0.00
+FBC	167	16.00	15.00	38.00	31.00	0.00	0.00
+FBC	168	12.00	26.00	29.00	33.00	0.00	0.00
+FBC	169	16.00	18.00	26.00	40.00	0.00	0.00
+FBC	170	16.00	22.00	29.00	33.00	0.00	0.00
+FBC	171	17.00	26.00	35.00	22.00	0.00	0.00
+FBC	172	14.00	18.00	34.00	34.00	0.00	0.00
+FBC	173	25.00	16.00	34.00	25.00	0.00	0.00
+FBC	174	14.00	23.00	34.00	29.00	0.00	0.00
+FBC	175	33.00	16.00	37.00	14.00	0.00	0.00
+FBC	176	16.00	28.00	33.00	23.00	0.00	0.00
+FBC	177	14.00	20.00	29.00	37.00	0.00	0.00
+FBC	178	13.00	26.00	30.00	31.00	0.00	0.00
+FBC	179	12.00	16.00	24.00	48.00	0.00	0.00
+FBC	180	20.00	19.00	37.00	24.00	0.00	0.00
+FBC	181	20.00	22.00	33.00	25.00	0.00	0.00
+FBC	182	30.00	16.00	25.00	29.00	0.00	0.00
+FBC	183	21.00	12.00	30.00	37.00	0.00	0.00
+FBC	184	13.00	28.00	31.00	28.00	0.00	0.00
+FBC	185	14.00	32.00	33.00	21.00	0.00	0.00
+FBC	186	24.00	25.00	33.00	18.00	0.00	0.00
+FBC	187	14.00	15.00	39.00	32.00	0.00	0.00
+FBC	188	26.00	24.00	25.00	25.00	0.00	0.00
+FBC	189	15.00	21.00	35.00	29.00	0.00	0.00
+FBC	190	22.00	32.00	21.00	25.00	0.00	0.00
+FBC	191	22.00	23.00	27.00	28.00	0.00	0.00
+FBC	192	32.00	24.00	14.00	30.00	0.00	0.00
+FBC	193	19.00	25.00	26.00	30.00	0.00	0.00
+FBC	194	16.00	33.00	25.00	26.00	0.00	0.00
+FBC	195	16.00	24.00	25.00	35.00	0.00	0.00
+FBC	196	20.00	28.00	22.00	30.00	0.00	0.00
+FBC	197	22.00	22.00	22.00	34.00	0.00	0.00
+FBC	198	19.00	23.00	35.00	23.00	0.00	0.00
+FBC	199	18.00	20.00	24.00	38.00	0.00	0.00
+FBC	200	17.00	31.00	19.00	33.00	0.00	0.00
+FBC	201	28.00	23.00	21.00	28.00	0.00	0.00
+FBC	202	20.00	26.00	18.00	36.00	0.00	0.00
+FBC	203	22.00	30.00	21.00	27.00	0.00	0.00
+FBC	204	28.00	29.00	24.00	19.00	0.00	0.00
+FBC	205	23.00	20.00	24.00	33.00	0.00	0.00
+FBC	206	25.00	24.00	22.00	29.00	0.00	0.00
+FBC	207	23.00	21.00	20.00	36.00	0.00	0.00
+FBC	208	16.00	38.00	26.00	20.00	0.00	0.00
+FBC	209	14.00	26.00	9.00	51.00	0.00	0.00
+FBC	210	19.00	24.00	36.00	21.00	0.00	0.00
+FBC	211	24.00	26.00	16.00	34.00	0.00	0.00
+FBC	212	19.00	35.00	14.00	32.00	0.00	0.00
+FBC	213	26.00	18.00	28.00	28.00	0.00	0.00
+FBC	214	19.00	25.00	25.00	31.00	0.00	0.00
+FBC	215	24.00	26.00	21.00	29.00	0.00	0.00
+FBC	216	25.00	18.00	25.00	32.00	0.00	0.00
+FBC	217	25.00	28.00	18.00	29.00	0.00	0.00
+FBC	218	22.00	30.00	18.00	30.00	0.00	0.00
+FBC	219	15.00	24.00	18.00	43.00	0.00	0.00
+FBC	220	23.00	24.00	23.00	30.00	0.00	0.00
+FBC	221	23.00	23.00	21.00	33.00	0.00	0.00
+FBC	222	21.00	22.00	18.00	39.00	0.00	0.00
+FBC	223	21.00	32.00	23.00	24.00	0.00	0.00
+FBC	224	26.00	25.00	22.00	27.00	0.00	0.00
+FBC	225	15.00	39.00	27.00	19.00	0.00	0.00
+FBC	226	20.00	26.00	23.00	31.00	0.00	0.00
+FBC	227	24.00	27.00	21.00	28.00	0.00	0.00
+FBC	228	32.00	18.00	27.00	23.00	0.00	0.00
+FBC	229	23.00	22.00	21.00	34.00	0.00	0.00
+FBC	230	19.00	31.00	17.00	33.00	0.00	0.00
+FBC	231	26.00	29.00	29.00	16.00	0.00	0.00
+FBC	232	22.00	20.00	14.00	44.00	0.00	0.00
+FBC	233	20.00	29.00	23.00	28.00	0.00	0.00
+FBC	234	19.00	28.00	22.00	31.00	0.00	0.00
+FBC	235	23.00	19.00	24.00	34.00	0.00	0.00
+FBC	236	27.00	26.00	18.00	29.00	0.00	0.00
+FBC	237	25.00	20.00	22.00	33.00	0.00	0.00
+FBC	238	21.00	34.00	20.00	25.00	0.00	0.00
+FBC	239	22.00	8.00	17.00	53.00	0.00	0.00
+FBC	240	29.00	22.00	18.00	31.00	0.00	0.00
+FBC	241	24.00	23.00	16.00	37.00	0.00	0.00
+FBC	242	32.00	22.00	16.00	30.00	0.00	0.00
+FBC	243	20.00	16.00	23.00	41.00	0.00	0.00
+FBC	244	26.00	23.00	17.00	34.00	0.00	0.00
+FBC	245	32.00	23.00	19.00	26.00	0.00	0.00
+FBC	246	24.00	33.00	21.00	22.00	0.00	0.00
+FBC	247	34.00	15.00	12.00	39.00	0.00	0.00
+FBC	248	14.00	19.00	24.00	43.00	0.00	0.00
+FBC	249	25.00	24.00	20.00	31.00	0.00	0.00
+FBC	250	30.00	25.00	15.00	30.00	0.00	0.00
+FBC	251	14.00	24.00	33.00	29.00	0.00	0.00
+# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+LBC	1	22.45	32.65	31.63	13.27	2.04	0.00
+LBC	2	26.00	17.00	10.00	47.00	0.00	0.00
+LBC	3	34.00	25.00	9.00	32.00	0.00	0.00
+LBC	4	13.00	32.00	10.00	45.00	0.00	0.00
+LBC	5	37.00	24.00	10.00	29.00	0.00	0.00
+LBC	6	44.00	26.00	17.00	13.00	0.00	0.00
+LBC	7	28.00	13.00	32.00	27.00	0.00	0.00
+LBC	8	49.00	16.00	18.00	17.00	0.00	0.00
+LBC	9	19.00	35.00	16.00	30.00	0.00	0.00
+LBC	10	35.00	13.00	22.00	30.00	0.00	0.00
+LBC	11	18.00	15.00	29.00	38.00	0.00	0.00
+LBC	12	28.00	24.00	22.00	26.00	0.00	0.00
+LBC	13	29.00	17.00	19.00	35.00	0.00	0.00
+LBC	14	21.21	24.24	24.24	30.30	1.01	0.00
+LBC	15	23.00	20.00	25.00	32.00	0.00	0.00
+LBC	16	35.00	15.00	20.00	30.00	0.00	0.00
+LBC	17	29.00	26.00	13.00	32.00	0.00	0.00
+LBC	18	31.00	30.00	18.00	21.00	0.00	0.00
+LBC	19	30.00	26.00	21.00	23.00	0.00	0.00
+LBC	20	23.00	21.00	20.00	36.00	0.00	0.00
+LBC	21	36.00	18.00	19.00	27.00	0.00	0.00
+LBC	22	39.00	31.00	13.00	17.00	0.00	0.00
+LBC	23	30.30	21.21	11.11	37.37	1.01	0.00
+LBC	24	36.00	14.00	20.00	30.00	0.00	0.00
+LBC	25	38.00	23.00	17.00	22.00	0.00	0.00
+LBC	26	36.00	21.00	13.00	30.00	0.00	0.00
+LBC	27	32.00	18.00	22.00	28.00	0.00	0.00
+LBC	28	30.00	13.00	25.00	32.00	0.00	0.00
+LBC	29	30.00	28.00	23.00	19.00	0.00	0.00
+LBC	30	34.00	21.00	13.00	32.00	0.00	0.00
+LBC	31	33.00	29.00	14.00	24.00	0.00	0.00
+LBC	32	38.00	20.00	20.00	22.00	0.00	0.00
+LBC	33	27.00	23.00	15.00	35.00	0.00	0.00
+LBC	34	43.00	17.00	20.00	20.00	0.00	0.00
+LBC	35	35.00	23.00	22.00	20.00	0.00	0.00
+LBC	36	41.00	25.00	16.00	18.00	0.00	0.00
+LBC	37	38.00	18.00	18.00	26.00	0.00	0.00
+LBC	38	23.00	26.00	25.00	26.00	0.00	0.00
+LBC	39	22.00	41.00	19.00	18.00	0.00	0.00
+LBC	40	29.00	14.00	23.00	34.00	0.00	0.00
+LBC	41	29.00	27.00	20.00	24.00	0.00	0.00
+LBC	42	29.00	27.00	18.00	26.00	0.00	0.00
+LBC	43	38.00	28.00	16.00	18.00	0.00	0.00
+LBC	44	21.00	26.00	23.00	30.00	0.00	0.00
+LBC	45	38.00	25.00	18.00	19.00	0.00	0.00
+LBC	46	27.00	21.00	22.00	30.00	0.00	0.00
+LBC	47	40.00	28.00	18.00	14.00	0.00	0.00
+LBC	48	25.00	22.00	20.00	33.00	0.00	0.00
+LBC	49	26.00	33.00	10.00	31.00	0.00	0.00
+LBC	50	49.00	20.00	10.00	21.00	0.00	0.00
+LBC	51	29.00	29.00	13.00	29.00	0.00	0.00
+LBC	52	43.00	22.00	22.00	13.00	0.00	0.00
+LBC	53	19.00	27.00	27.00	27.00	0.00	0.00
+LBC	54	25.00	18.00	25.00	32.00	0.00	0.00
+LBC	55	32.00	22.00	17.00	29.00	0.00	0.00
+LBC	56	36.00	20.00	16.00	28.00	0.00	0.00
+LBC	57	28.00	24.00	23.00	25.00	0.00	0.00
+LBC	58	23.00	39.00	17.00	21.00	0.00	0.00
+LBC	59	33.00	21.00	26.00	20.00	0.00	0.00
+LBC	60	30.00	26.00	19.00	25.00	0.00	0.00
+LBC	61	23.00	23.00	25.00	29.00	0.00	0.00
+LBC	62	35.00	19.00	20.00	26.00	0.00	0.00
+LBC	63	26.00	25.00	29.00	20.00	0.00	0.00
+LBC	64	30.00	20.00	27.00	23.00	0.00	0.00
+LBC	65	38.00	17.00	21.00	24.00	0.00	0.00
+LBC	66	33.00	26.00	14.00	27.00	0.00	0.00
+LBC	67	35.00	21.00	21.00	23.00	0.00	0.00
+LBC	68	39.00	28.00	15.00	18.00	0.00	0.00
+LBC	69	38.00	18.00	22.00	22.00	0.00	0.00
+LBC	70	40.00	13.00	22.00	25.00	0.00	0.00
+LBC	71	29.00	41.00	19.00	11.00	0.00	0.00
+LBC	72	33.00	26.00	28.00	13.00	0.00	0.00
+LBC	73	31.00	18.00	24.00	27.00	0.00	0.00
+LBC	74	31.00	32.00	13.00	24.00	0.00	0.00
+LBC	75	46.00	10.00	21.00	23.00	0.00	0.00
+LBC	76	23.00	28.00	25.00	24.00	0.00	0.00
+LBC	77	35.00	20.00	19.00	26.00	0.00	0.00
+LBC	78	29.00	30.00	26.00	15.00	0.00	0.00
+LBC	79	24.00	25.00	27.00	24.00	0.00	0.00
+LBC	80	40.00	18.00	29.00	13.00	0.00	0.00
+LBC	81	18.00	26.00	26.00	30.00	0.00	0.00
+LBC	82	30.00	25.00	28.00	17.00	0.00	0.00
+LBC	83	36.00	25.00	14.00	25.00	0.00	0.00
+LBC	84	22.00	39.00	23.00	16.00	0.00	0.00
+LBC	85	42.00	20.00	21.00	17.00	0.00	0.00
+LBC	86	12.00	47.00	16.00	25.00	0.00	0.00
+LBC	87	45.00	15.00	19.00	21.00	0.00	0.00
+LBC	88	26.00	24.00	31.00	19.00	0.00	0.00
+LBC	89	26.00	25.00	29.00	20.00	0.00	0.00
+LBC	90	24.00	22.00	26.00	28.00	0.00	0.00
+LBC	91	29.00	30.00	24.00	17.00	0.00	0.00
+LBC	92	22.00	13.00	32.00	33.00	0.00	0.00
+LBC	93	29.00	40.00	13.00	18.00	0.00	0.00
+LBC	94	30.00	16.00	25.00	29.00	0.00	0.00
+LBC	95	31.31	35.35	17.17	16.16	1.01	0.00
+LBC	96	34.00	27.00	15.00	24.00	0.00	0.00
+LBC	97	32.00	27.00	25.00	16.00	0.00	0.00
+LBC	98	21.21	31.31	24.24	23.23	1.01	0.00
+LBC	99	27.00	37.00	21.00	15.00	0.00	0.00
+LBC	100	29.00	15.00	26.00	30.00	0.00	0.00
+LBC	101	27.00	34.00	25.00	14.00	0.00	0.00
+LBC	102	20.00	14.00	36.00	30.00	0.00	0.00
+LBC	103	32.00	26.00	16.00	26.00	0.00	0.00
+LBC	104	30.00	28.00	22.00	20.00	0.00	0.00
+LBC	105	35.00	35.00	19.00	11.00	0.00	0.00
+LBC	106	22.00	32.00	25.00	21.00	0.00	0.00
+LBC	107	19.19	33.33	26.26	21.21	1.01	0.00
+LBC	108	27.27	33.33	21.21	18.18	1.01	0.00
+LBC	109	19.00	29.00	24.00	28.00	0.00	0.00
+LBC	110	20.20	31.31	28.28	20.20	1.01	0.00
+LBC	111	25.25	33.33	22.22	19.19	1.01	0.00
+LBC	112	39.39	28.28	16.16	16.16	1.01	0.00
+LBC	113	21.21	24.24	31.31	23.23	1.01	0.00
+LBC	114	19.00	31.00	35.00	15.00	0.00	0.00
+LBC	115	32.00	23.00	25.00	20.00	0.00	0.00
+LBC	116	20.00	29.00	35.00	16.00	0.00	0.00
+LBC	117	31.00	21.00	21.00	27.00	0.00	0.00
+LBC	118	25.00	14.00	35.00	26.00	0.00	0.00
+LBC	119	21.00	31.00	24.00	24.00	0.00	0.00
+LBC	120	19.00	24.00	27.00	30.00	0.00	0.00
+LBC	121	24.24	36.36	20.20	19.19	1.01	0.00
+LBC	122	18.00	25.00	23.00	34.00	0.00	0.00
+LBC	123	25.00	48.00	10.00	17.00	0.00	0.00
+LBC	124	10.00	31.00	35.00	24.00	0.00	0.00
+LBC	125	27.00	24.00	22.00	27.00	0.00	0.00
+LBC	126	24.00	19.00	26.00	31.00	0.00	0.00
+LBC	127	26.00	16.00	22.00	36.00	0.00	0.00
+LBC	128	16.00	35.00	30.00	19.00	0.00	0.00
+LBC	129	24.00	27.00	26.00	23.00	0.00	0.00
+LBC	130	25.00	19.00	23.00	33.00	0.00	0.00
+LBC	131	17.00	40.00	24.00	19.00	0.00	0.00
+LBC	132	20.00	27.00	24.00	29.00	0.00	0.00
+LBC	133	15.00	34.00	33.00	18.00	0.00	0.00
+LBC	134	22.00	19.00	31.00	28.00	0.00	0.00
+LBC	135	17.00	28.00	26.00	29.00	0.00	0.00
+LBC	136	25.00	33.00	14.00	28.00	0.00	0.00
+LBC	137	21.00	22.00	30.00	27.00	0.00	0.00
+LBC	138	15.00	30.00	29.00	26.00	0.00	0.00
+LBC	139	19.00	32.00	22.00	27.00	0.00	0.00
+LBC	140	19.00	24.00	29.00	28.00	0.00	0.00
+LBC	141	21.00	24.00	25.00	30.00	0.00	0.00
+LBC	142	17.00	32.00	35.00	16.00	0.00	0.00
+LBC	143	23.00	23.00	28.00	26.00	0.00	0.00
+LBC	144	20.00	33.00	24.00	23.00	0.00	0.00
+LBC	145	20.00	26.00	24.00	30.00	0.00	0.00
+LBC	146	26.00	15.00	40.00	19.00	0.00	0.00
+LBC	147	23.00	23.00	30.00	24.00	0.00	0.00
+LBC	148	12.00	32.00	33.00	23.00	0.00	0.00
+LBC	149	27.00	24.00	23.00	26.00	0.00	0.00
+LBC	150	12.00	32.00	21.00	35.00	0.00	0.00
+LBC	151	22.00	29.00	34.00	15.00	0.00	0.00
+LBC	152	16.00	21.00	26.00	37.00	0.00	0.00
+LBC	153	24.00	20.00	34.00	22.00	0.00	0.00
+LBC	154	25.00	22.00	28.00	25.00	0.00	0.00
+LBC	155	21.00	28.00	17.00	34.00	0.00	0.00
+LBC	156	16.00	23.00	36.00	25.00	0.00	0.00
+LBC	157	23.00	34.00	20.00	23.00	0.00	0.00
+LBC	158	21.00	33.00	21.00	25.00	0.00	0.00
+LBC	159	19.00	15.00	44.00	22.00	0.00	0.00
+LBC	160	24.00	31.00	22.00	23.00	0.00	0.00
+LBC	161	13.00	28.00	40.00	19.00	0.00	0.00
+LBC	162	33.00	19.00	20.00	28.00	0.00	0.00
+LBC	163	23.00	26.00	31.00	20.00	0.00	0.00
+LBC	164	33.00	19.00	20.00	28.00	0.00	0.00
+LBC	165	13.00	16.00	37.00	34.00	0.00	0.00
+LBC	166	20.00	36.00	30.00	14.00	0.00	0.00
+LBC	167	17.00	28.00	25.00	30.00	0.00	0.00
+LBC	168	16.00	24.00	31.00	29.00	0.00	0.00
+LBC	169	21.00	23.00	21.00	35.00	0.00	0.00
+LBC	170	22.00	24.00	27.00	27.00	0.00	0.00
+LBC	171	23.00	30.00	31.00	16.00	0.00	0.00
+LBC	172	24.00	22.00	30.00	24.00	0.00	0.00
+LBC	173	24.00	17.00	33.00	26.00	0.00	0.00
+LBC	174	21.00	24.00	33.00	22.00	0.00	0.00
+LBC	175	34.00	19.00	34.00	13.00	0.00	0.00
+LBC	176	17.00	37.00	24.00	22.00	0.00	0.00
+LBC	177	24.00	24.00	25.00	27.00	0.00	0.00
+LBC	178	19.00	26.00	30.00	25.00	0.00	0.00
+LBC	179	24.00	20.00	20.00	36.00	0.00	0.00
+LBC	180	22.00	25.00	31.00	22.00	0.00	0.00
+LBC	181	21.00	17.00	38.00	24.00	0.00	0.00
+LBC	182	35.00	21.00	20.00	24.00	0.00	0.00
+LBC	183	28.00	15.00	27.00	30.00	0.00	0.00
+LBC	184	17.00	30.00	29.00	24.00	0.00	0.00
+LBC	185	16.00	32.00	33.00	19.00	0.00	0.00
+LBC	186	21.00	22.00	36.00	21.00	0.00	0.00
+LBC	187	24.00	13.00	41.00	22.00	0.00	0.00
+LBC	188	29.00	19.00	30.00	22.00	0.00	0.00
+LBC	189	19.00	23.00	33.00	25.00	0.00	0.00
+LBC	190	24.00	28.00	25.00	23.00	0.00	0.00
+LBC	191	28.00	21.00	29.00	22.00	0.00	0.00
+LBC	192	37.00	25.00	13.00	25.00	0.00	0.00
+LBC	193	18.00	26.00	25.00	31.00	0.00	0.00
+LBC	194	21.00	34.00	24.00	21.00	0.00	0.00
+LBC	195	16.00	28.00	21.00	35.00	0.00	0.00
+LBC	196	23.00	23.00	27.00	27.00	0.00	0.00
+LBC	197	18.00	20.00	24.00	38.00	0.00	0.00
+LBC	198	15.00	19.00	39.00	27.00	0.00	0.00
+LBC	199	23.00	17.00	27.00	33.00	0.00	0.00
+LBC	200	25.00	27.00	23.00	25.00	0.00	0.00
+LBC	201	26.00	19.00	25.00	30.00	0.00	0.00
+LBC	202	23.00	23.00	21.00	33.00	0.00	0.00
+LBC	203	21.00	19.00	32.00	28.00	0.00	0.00
+LBC	204	26.00	29.00	24.00	21.00	0.00	0.00
+LBC	205	16.00	23.00	21.00	40.00	0.00	0.00
+LBC	206	28.00	25.00	21.00	26.00	0.00	0.00
+LBC	207	22.00	22.00	19.00	37.00	0.00	0.00
+LBC	208	12.00	32.00	32.00	24.00	0.00	0.00
+LBC	209	18.00	20.00	15.00	47.00	0.00	0.00
+LBC	210	18.00	15.00	45.00	22.00	0.00	0.00
+LBC	211	28.00	14.00	28.00	30.00	0.00	0.00
+LBC	212	23.00	27.00	22.00	28.00	0.00	0.00
+LBC	213	22.00	12.00	34.00	32.00	0.00	0.00
+LBC	214	16.00	24.00	26.00	34.00	0.00	0.00
+LBC	215	28.00	22.00	25.00	25.00	0.00	0.00
+LBC	216	18.00	17.00	26.00	39.00	0.00	0.00
+LBC	217	27.00	30.00	16.00	27.00	0.00	0.00
+LBC	218	18.00	24.00	24.00	34.00	0.00	0.00
+LBC	219	19.00	18.00	24.00	39.00	0.00	0.00
+LBC	220	28.00	23.00	24.00	25.00	0.00	0.00
+LBC	221	20.00	24.00	20.00	36.00	0.00	0.00
+LBC	222	22.00	21.00	19.00	38.00	0.00	0.00
+LBC	223	19.00	22.00	33.00	26.00	0.00	0.00
+LBC	224	19.00	20.00	27.00	34.00	0.00	0.00
+LBC	225	14.00	32.00	34.00	20.00	0.00	0.00
+LBC	226	20.00	20.00	29.00	31.00	0.00	0.00
+LBC	227	17.00	22.00	26.00	35.00	0.00	0.00
+LBC	228	34.00	20.00	25.00	21.00	0.00	0.00
+LBC	229	22.00	27.00	16.00	35.00	0.00	0.00
+LBC	230	23.00	33.00	15.00	29.00	0.00	0.00
+LBC	231	20.00	27.00	31.00	22.00	0.00	0.00
+LBC	232	25.00	23.00	11.00	41.00	0.00	0.00
+LBC	233	22.00	25.00	27.00	26.00	0.00	0.00
+LBC	234	14.00	27.00	23.00	36.00	0.00	0.00
+LBC	235	17.00	11.00	32.00	40.00	0.00	0.00
+LBC	236	29.00	20.00	24.00	27.00	0.00	0.00
+LBC	237	16.00	19.00	23.00	42.00	0.00	0.00
+LBC	238	22.00	25.00	29.00	24.00	0.00	0.00
+LBC	239	18.00	8.00	17.00	57.00	0.00	0.00
+LBC	240	27.00	26.00	14.00	33.00	0.00	0.00
+LBC	241	21.00	22.00	17.00	40.00	0.00	0.00
+LBC	242	26.00	28.00	10.00	36.00	0.00	0.00
+LBC	243	25.00	15.00	24.00	36.00	0.00	0.00
+LBC	244	15.00	24.00	16.00	45.00	0.00	0.00
+LBC	245	24.00	23.00	19.00	34.00	0.00	0.00
+LBC	246	18.00	25.00	29.00	28.00	0.00	0.00
+LBC	247	30.00	13.00	14.00	43.00	0.00	0.00
+LBC	248	22.00	17.00	26.00	35.00	0.00	0.00
+LBC	249	25.00	22.00	22.00	31.00	0.00	0.00
+LBC	250	25.00	20.00	20.00	35.00	0.00	0.00
+LBC	251	13.00	17.00	40.00	30.00	0.00	0.00
+# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
+# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
+RL	251	200
+# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count
+FRL	251	100
+# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count
+LRL	251	100
+# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
+ID	1	1	0
+ID	2	1	0
+ID	4	2	0
+ID	10	5	0
+ID	13	1	0
+ID	14	1	0
+ID	15	1	0
+ID	18	1	0
+ID	21	1	0
+ID	22	1	0
+ID	23	2	0
+ID	24	3	0
+ID	29	1	0
+ID	35	2	0
+ID	38	2	0
+# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
+IC	2	1	0	0	0
+IC	4	2	0	0	0
+IC	5	3	0	0	0
+IC	210	2	0	0	0
+IC	219	1	0	0	0
+IC	220	1	0	0	0
+IC	224	2	0	0	0
+IC	225	2	0	0	0
+IC	226	1	0	0	0
+IC	228	1	0	0	0
+IC	230	1	0	0	0
+IC	233	1	0	0	0
+IC	234	1	0	0	0
+IC	235	1	0	0	0
+IC	236	1	0	0	0
+IC	239	1	0	0	0
+IC	240	1	0	0	0
+IC	241	1	0	0	0
+IC	247	1	0	0	0
+# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
+COV	[2-2]	2	1
+COV	[3-3]	3	3
+COV	[4-4]	4	1
+COV	[5-5]	5	5
+COV	[9-9]	9	3
+COV	[10-10]	10	2
+COV	[11-11]	11	3
+COV	[12-12]	12	2
+COV	[13-13]	13	1
+COV	[14-14]	14	1
+COV	[15-15]	15	1
+COV	[18-18]	18	1
+COV	[20-20]	20	6
+COV	[21-21]	21	6
+COV	[23-23]	23	3
+COV	[24-24]	24	1
+COV	[25-25]	25	211
+# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
+GCD	0.0	100.000	0.000	0.000	0.000	0.000	0.000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/samtools_stats_out1__gcc.tab	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,252 @@
+# ACGT content per cycle.  The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+1	21.94	30.10	34.18	13.78	2.04	0.00
+2	30.00	16.00	11.00	43.00	0.00	0.00
+3	33.00	25.00	9.00	33.00	0.00	0.00
+4	17.00	29.00	13.00	41.00	0.00	0.00
+5	37.00	22.00	12.00	29.00	0.00	0.00
+6	36.00	26.00	17.00	21.00	0.00	0.00
+7	29.50	13.50	31.50	25.50	0.00	0.00
+8	50.50	14.50	19.50	15.50	0.00	0.00
+9	17.00	33.00	18.00	32.00	0.00	0.00
+10	37.00	14.00	21.00	28.00	0.00	0.00
+11	20.50	14.50	29.50	35.50	0.00	0.00
+12	30.00	24.00	22.00	24.00	0.00	0.00
+13	27.00	15.00	21.00	37.00	0.00	0.00
+14	24.24	22.22	26.26	27.27	1.01	0.00
+15	25.50	20.50	24.50	29.50	0.00	0.00
+16	31.00	15.00	20.00	34.00	0.00	0.00
+17	28.00	25.00	14.00	33.00	0.00	0.00
+18	30.50	28.50	19.50	21.50	0.00	0.00
+19	29.00	26.00	21.00	24.00	0.00	0.00
+20	22.50	23.50	17.50	36.50	0.00	0.00
+21	35.50	17.50	19.50	27.50	0.00	0.00
+22	37.50	28.50	15.50	18.50	0.00	0.00
+23	31.31	19.19	13.13	36.36	1.01	0.00
+24	37.00	12.00	22.00	29.00	0.00	0.00
+25	35.50	22.50	17.50	24.50	0.00	0.00
+26	33.50	18.50	15.50	32.50	0.00	0.00
+27	34.50	14.50	25.50	25.50	0.00	0.00
+28	31.00	14.00	24.00	31.00	0.00	0.00
+29	30.00	27.00	24.00	19.00	0.00	0.00
+30	31.00	20.00	14.00	35.00	0.00	0.00
+31	33.50	29.50	13.50	23.50	0.00	0.00
+32	42.50	20.50	19.50	17.50	0.00	0.00
+33	25.50	23.50	14.50	36.50	0.00	0.00
+34	39.50	16.50	20.50	23.50	0.00	0.00
+35	32.50	23.50	21.50	22.50	0.00	0.00
+36	42.00	25.00	16.00	17.00	0.00	0.00
+37	38.00	17.00	19.00	26.00	0.00	0.00
+38	24.00	26.00	25.00	25.00	0.00	0.00
+39	22.50	41.50	18.50	17.50	0.00	0.00
+40	32.00	16.00	21.00	31.00	0.00	0.00
+41	33.00	28.00	19.00	20.00	0.00	0.00
+42	30.50	25.50	19.50	24.50	0.00	0.00
+43	35.00	29.00	15.00	21.00	0.00	0.00
+44	20.00	27.00	22.00	31.00	0.00	0.00
+45	40.50	21.50	21.50	16.50	0.00	0.00
+46	26.50	20.50	22.50	30.50	0.00	0.00
+47	38.50	29.50	16.50	15.50	0.00	0.00
+48	27.50	24.50	17.50	30.50	0.00	0.00
+49	28.50	32.50	10.50	28.50	0.00	0.00
+50	46.50	20.50	9.50	23.50	0.00	0.00
+51	34.50	28.50	13.50	23.50	0.00	0.00
+52	41.50	23.50	20.50	14.50	0.00	0.00
+53	20.00	28.00	26.00	26.00	0.00	0.00
+54	31.50	18.50	24.50	25.50	0.00	0.00
+55	30.50	22.50	16.50	30.50	0.00	0.00
+56	33.50	22.50	13.50	30.50	0.00	0.00
+57	23.00	24.00	23.00	30.00	0.00	0.00
+58	25.00	37.00	19.00	19.00	0.00	0.00
+59	34.00	23.00	24.00	19.00	0.00	0.00
+60	29.00	28.00	17.00	26.00	0.00	0.00
+61	25.50	23.50	24.50	26.50	0.00	0.00
+62	31.50	22.50	16.50	29.50	0.00	0.00
+63	27.50	28.50	25.50	18.50	0.00	0.00
+64	33.50	21.50	25.50	19.50	0.00	0.00
+65	35.50	19.50	18.50	26.50	0.00	0.00
+66	34.00	25.00	15.00	26.00	0.00	0.00
+67	37.00	23.00	19.00	21.00	0.00	0.00
+68	36.50	29.50	13.50	20.50	0.00	0.00
+69	38.50	19.50	20.50	21.50	0.00	0.00
+70	38.50	16.50	18.50	26.50	0.00	0.00
+71	25.50	38.50	21.50	14.50	0.00	0.00
+72	29.00	29.00	25.00	17.00	0.00	0.00
+73	32.50	20.50	21.50	25.50	0.00	0.00
+74	28.50	32.50	12.50	26.50	0.00	0.00
+75	41.50	12.50	18.50	27.50	0.00	0.00
+76	24.50	29.50	23.50	22.50	0.00	0.00
+77	36.00	21.00	18.00	25.00	0.00	0.00
+78	27.00	34.00	22.00	17.00	0.00	0.00
+79	21.50	26.50	25.50	26.50	0.00	0.00
+80	34.00	19.00	28.00	19.00	0.00	0.00
+81	17.00	26.00	26.00	31.00	0.00	0.00
+82	31.00	30.00	23.00	16.00	0.00	0.00
+83	31.50	26.50	12.50	29.50	0.00	0.00
+84	19.00	41.00	21.00	19.00	0.00	0.00
+85	37.50	24.50	16.50	21.50	0.00	0.00
+86	15.00	48.00	15.00	22.00	0.00	0.00
+87	41.00	16.00	18.00	25.00	0.00	0.00
+88	23.50	27.50	27.50	21.50	0.00	0.00
+89	26.50	27.50	26.50	19.50	0.00	0.00
+90	18.50	23.50	24.50	33.50	0.00	0.00
+91	27.00	32.00	22.00	19.00	0.00	0.00
+92	23.50	17.50	27.50	31.50	0.00	0.00
+93	25.50	37.50	15.50	21.50	0.00	0.00
+94	27.00	17.00	24.00	32.00	0.00	0.00
+95	26.77	37.88	14.65	20.71	1.01	0.00
+96	29.50	25.50	16.50	28.50	0.00	0.00
+97	29.00	31.00	21.00	19.00	0.00	0.00
+98	18.18	33.33	22.22	26.26	1.01	0.00
+99	24.50	33.50	24.50	17.50	0.00	0.00
+100	24.50	16.50	24.50	34.50	0.00	0.00
+101	25.00	40.00	19.00	16.00	0.00	0.00
+102	17.50	17.50	32.50	32.50	0.00	0.00
+103	31.00	26.00	16.00	27.00	0.00	0.00
+104	26.50	29.50	20.50	23.50	0.00	0.00
+105	34.00	33.00	21.00	12.00	0.00	0.00
+106	23.00	31.00	26.00	20.00	0.00	0.00
+107	17.68	35.86	23.74	22.73	1.01	0.00
+108	24.75	30.81	23.74	20.71	1.01	0.00
+109	17.00	31.00	22.00	30.00	0.00	0.00
+110	16.16	35.35	24.24	24.24	1.01	0.00
+111	24.24	32.32	23.23	20.20	1.01	0.00
+112	37.37	28.28	16.16	18.18	1.01	0.00
+113	19.70	22.73	32.83	24.75	1.01	0.00
+114	17.00	31.00	35.00	17.00	0.00	0.00
+115	29.50	24.50	23.50	22.50	0.00	0.00
+116	22.00	30.00	34.00	14.00	0.00	0.00
+117	27.00	23.00	19.00	31.00	0.00	0.00
+118	25.50	14.50	34.50	25.50	0.00	0.00
+119	22.50	34.50	20.50	22.50	0.00	0.00
+120	17.50	24.50	26.50	31.50	0.00	0.00
+121	27.78	33.84	22.73	15.66	1.01	0.00
+122	17.00	23.00	25.00	35.00	0.00	0.00
+123	23.50	46.50	11.50	18.50	0.00	0.00
+124	9.00	32.00	34.00	25.00	0.00	0.00
+125	24.00	27.00	19.00	30.00	0.00	0.00
+126	26.00	17.00	28.00	29.00	0.00	0.00
+127	26.50	16.50	21.50	35.50	0.00	0.00
+128	18.00	34.00	31.00	17.00	0.00	0.00
+129	25.50	25.50	27.50	21.50	0.00	0.00
+130	25.00	20.00	22.00	33.00	0.00	0.00
+131	17.50	39.50	24.50	18.50	0.00	0.00
+132	21.00	28.00	23.00	28.00	0.00	0.00
+133	13.50	31.50	35.50	19.50	0.00	0.00
+134	24.50	19.50	30.50	25.50	0.00	0.00
+135	16.50	23.50	30.50	29.50	0.00	0.00
+136	28.00	32.00	15.00	25.00	0.00	0.00
+137	22.50	21.50	30.50	25.50	0.00	0.00
+138	14.50	34.50	24.50	26.50	0.00	0.00
+139	20.50	29.50	24.50	25.50	0.00	0.00
+140	17.00	23.00	30.00	30.00	0.00	0.00
+141	20.50	23.50	25.50	30.50	0.00	0.00
+142	18.00	29.00	38.00	15.00	0.00	0.00
+143	22.00	24.00	27.00	27.00	0.00	0.00
+144	21.50	30.50	26.50	21.50	0.00	0.00
+145	22.00	21.00	29.00	28.00	0.00	0.00
+146	25.00	16.00	39.00	20.00	0.00	0.00
+147	26.50	22.50	30.50	20.50	0.00	0.00
+148	12.50	28.50	36.50	22.50	0.00	0.00
+149	26.50	23.50	23.50	26.50	0.00	0.00
+150	14.00	29.00	24.00	33.00	0.00	0.00
+151	19.50	30.50	32.50	17.50	0.00	0.00
+152	18.50	17.50	29.50	34.50	0.00	0.00
+153	22.50	22.50	31.50	23.50	0.00	0.00
+154	22.00	21.00	29.00	28.00	0.00	0.00
+155	21.00	26.00	19.00	34.00	0.00	0.00
+156	14.50	23.50	35.50	26.50	0.00	0.00
+157	22.00	31.00	23.00	24.00	0.00	0.00
+158	22.50	29.50	24.50	23.50	0.00	0.00
+159	17.50	12.50	46.50	23.50	0.00	0.00
+160	24.50	26.50	26.50	22.50	0.00	0.00
+161	13.00	23.00	45.00	19.00	0.00	0.00
+162	31.50	16.50	22.50	29.50	0.00	0.00
+163	19.50	21.50	35.50	23.50	0.00	0.00
+164	29.00	18.00	21.00	32.00	0.00	0.00
+165	14.50	17.50	35.50	32.50	0.00	0.00
+166	17.50	37.50	28.50	16.50	0.00	0.00
+167	16.50	21.50	31.50	30.50	0.00	0.00
+168	14.00	25.00	30.00	31.00	0.00	0.00
+169	18.50	20.50	23.50	37.50	0.00	0.00
+170	19.00	23.00	28.00	30.00	0.00	0.00
+171	20.00	28.00	33.00	19.00	0.00	0.00
+172	19.00	20.00	32.00	29.00	0.00	0.00
+173	24.50	16.50	33.50	25.50	0.00	0.00
+174	17.50	23.50	33.50	25.50	0.00	0.00
+175	33.50	17.50	35.50	13.50	0.00	0.00
+176	16.50	32.50	28.50	22.50	0.00	0.00
+177	19.00	22.00	27.00	32.00	0.00	0.00
+178	16.00	26.00	30.00	28.00	0.00	0.00
+179	18.00	18.00	22.00	42.00	0.00	0.00
+180	21.00	22.00	34.00	23.00	0.00	0.00
+181	20.50	19.50	35.50	24.50	0.00	0.00
+182	32.50	18.50	22.50	26.50	0.00	0.00
+183	24.50	13.50	28.50	33.50	0.00	0.00
+184	15.00	29.00	30.00	26.00	0.00	0.00
+185	15.00	32.00	33.00	20.00	0.00	0.00
+186	22.50	23.50	34.50	19.50	0.00	0.00
+187	19.00	14.00	40.00	27.00	0.00	0.00
+188	27.50	21.50	27.50	23.50	0.00	0.00
+189	17.00	22.00	34.00	27.00	0.00	0.00
+190	23.00	30.00	23.00	24.00	0.00	0.00
+191	25.00	22.00	28.00	25.00	0.00	0.00
+192	34.50	24.50	13.50	27.50	0.00	0.00
+193	18.50	25.50	25.50	30.50	0.00	0.00
+194	18.50	33.50	24.50	23.50	0.00	0.00
+195	16.00	26.00	23.00	35.00	0.00	0.00
+196	21.50	25.50	24.50	28.50	0.00	0.00
+197	20.00	21.00	23.00	36.00	0.00	0.00
+198	17.00	21.00	37.00	25.00	0.00	0.00
+199	20.50	18.50	25.50	35.50	0.00	0.00
+200	21.00	29.00	21.00	29.00	0.00	0.00
+201	27.00	21.00	23.00	29.00	0.00	0.00
+202	21.50	24.50	19.50	34.50	0.00	0.00
+203	21.50	24.50	26.50	27.50	0.00	0.00
+204	27.00	29.00	24.00	20.00	0.00	0.00
+205	19.50	21.50	22.50	36.50	0.00	0.00
+206	26.50	24.50	21.50	27.50	0.00	0.00
+207	22.50	21.50	19.50	36.50	0.00	0.00
+208	14.00	35.00	29.00	22.00	0.00	0.00
+209	16.00	23.00	12.00	49.00	0.00	0.00
+210	18.50	19.50	40.50	21.50	0.00	0.00
+211	26.00	20.00	22.00	32.00	0.00	0.00
+212	21.00	31.00	18.00	30.00	0.00	0.00
+213	24.00	15.00	31.00	30.00	0.00	0.00
+214	17.50	24.50	25.50	32.50	0.00	0.00
+215	26.00	24.00	23.00	27.00	0.00	0.00
+216	21.50	17.50	25.50	35.50	0.00	0.00
+217	26.00	29.00	17.00	28.00	0.00	0.00
+218	20.00	27.00	21.00	32.00	0.00	0.00
+219	17.00	21.00	21.00	41.00	0.00	0.00
+220	25.50	23.50	23.50	27.50	0.00	0.00
+221	21.50	23.50	20.50	34.50	0.00	0.00
+222	21.50	21.50	18.50	38.50	0.00	0.00
+223	20.00	27.00	28.00	25.00	0.00	0.00
+224	22.50	22.50	24.50	30.50	0.00	0.00
+225	14.50	35.50	30.50	19.50	0.00	0.00
+226	20.00	23.00	26.00	31.00	0.00	0.00
+227	20.50	24.50	23.50	31.50	0.00	0.00
+228	33.00	19.00	26.00	22.00	0.00	0.00
+229	22.50	24.50	18.50	34.50	0.00	0.00
+230	21.00	32.00	16.00	31.00	0.00	0.00
+231	23.00	28.00	30.00	19.00	0.00	0.00
+232	23.50	21.50	12.50	42.50	0.00	0.00
+233	21.00	27.00	25.00	27.00	0.00	0.00
+234	16.50	27.50	22.50	33.50	0.00	0.00
+235	20.00	15.00	28.00	37.00	0.00	0.00
+236	28.00	23.00	21.00	28.00	0.00	0.00
+237	20.50	19.50	22.50	37.50	0.00	0.00
+238	21.50	29.50	24.50	24.50	0.00	0.00
+239	20.00	8.00	17.00	55.00	0.00	0.00
+240	28.00	24.00	16.00	32.00	0.00	0.00
+241	22.50	22.50	16.50	38.50	0.00	0.00
+242	29.00	25.00	13.00	33.00	0.00	0.00
+243	22.50	15.50	23.50	38.50	0.00	0.00
+244	20.50	23.50	16.50	39.50	0.00	0.00
+245	28.00	23.00	19.00	30.00	0.00	0.00
+246	21.00	29.00	25.00	25.00	0.00	0.00
+247	32.00	14.00	13.00	41.00	0.00	0.00
+248	18.00	18.00	25.00	39.00	0.00	0.00
+249	25.00	23.00	21.00	31.00	0.00	0.00
+250	27.50	22.50	17.50	32.50	0.00	0.00
+251	13.50	20.50	36.50	29.50	0.00	0.00
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/samtools_stats_out1__mpc.tab	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,255 @@
+# Mismatches per cycle and quality. 
+# Columns correspond to qualities, rows to cycles. First column is the cycle number, second
+# is the number of N's and the rest is the number of mismatches
+1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0
+2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0
+3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0
+4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0
+5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/samtools_stats_out1__sn.tab	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,39 @@
+# Summary Numbers. 
+raw total sequences:	200
+filtered sequences:	0
+sequences:	200
+is sorted:	1
+1st fragments:	100
+last fragments:	100
+reads mapped:	25
+reads mapped and paired:	0	# paired-end technology bit set + both mates mapped
+reads unmapped:	175
+reads properly paired:	0	# proper-pair bit set
+reads paired:	200	# paired-end technology bit set
+reads duplicated:	0	# PCR or optical duplicate bit set
+reads MQ0:	6	# mapped and MQ=0
+reads QC failed:	0
+non-primary alignments:	0
+total length:	50200	# ignores clipping
+total first fragment length:	25100	# ignores clipping
+total last fragment length:	25100	# ignores clipping
+bases mapped:	6275	# ignores clipping
+bases mapped (cigar):	6275	# more accurate
+bases trimmed:	0
+bases duplicated:	0
+mismatches:	591	# from NM fields
+error rate:	9.418327e-02	# mismatches / bases mapped (cigar)
+average length:	251
+average first fragment length:	251
+average last fragment length:	251
+maximum length:	251
+maximum first fragment length:	251
+maximum last fragment length:	251
+average quality:	34.7
+insert size average:	0.0
+insert size standard deviation:	0.0
+inward oriented pairs:	0
+outward oriented pairs:	0
+pairs with other orientation:	0
+pairs on different chromosomes:	0
+percentage of properly paired reads (%):	0.0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/samtools_stats_out2.tab	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,1138 @@
+# This file was produced by samtools stats (1.3.1+htslib-1.3.1) and can be plotted using plot-bamstats
+# This file contains statistics for all reads.
+# The command line was:  stats --coverage 1,1000,1 --GC-depth 20000.0 --insert-size 8000 --most-inserts 0.99 --trim-quality 0 --ref-seq /tmp/tmpO1aTrb/files/000/dataset_5.dat /tmp/tmpO1aTrb/files/000/dataset_4.dat
+# CHK, Checksum	[2]Read Names	[3]Sequences	[4]Qualities
+# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
+CHK	1bd20fd8	58ad2167	29883386
+# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
+SN	raw total sequences:	200
+SN	filtered sequences:	0
+SN	sequences:	200
+SN	is sorted:	1
+SN	1st fragments:	100
+SN	last fragments:	100
+SN	reads mapped:	25
+SN	reads mapped and paired:	0	# paired-end technology bit set + both mates mapped
+SN	reads unmapped:	175
+SN	reads properly paired:	0	# proper-pair bit set
+SN	reads paired:	200	# paired-end technology bit set
+SN	reads duplicated:	0	# PCR or optical duplicate bit set
+SN	reads MQ0:	6	# mapped and MQ=0
+SN	reads QC failed:	0
+SN	non-primary alignments:	0
+SN	total length:	50200	# ignores clipping
+SN	bases mapped:	6275	# ignores clipping
+SN	bases mapped (cigar):	6275	# more accurate
+SN	bases trimmed:	0
+SN	bases duplicated:	0
+SN	mismatches:	591	# from NM fields
+SN	error rate:	9.418327e-02	# mismatches / bases mapped (cigar)
+SN	average length:	251
+SN	maximum length:	251
+SN	average quality:	34.7
+SN	insert size average:	0.0
+SN	insert size standard deviation:	0.0
+SN	inward oriented pairs:	0
+SN	outward oriented pairs:	0
+SN	pairs with other orientation:	0
+SN	pairs on different chromosomes:	0
+# First Fragment Qualitites. Use `grep ^FFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+FFQ	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	3	2	0	20	38	32	1	0	0	0	0	0	0
+FFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	18	36	36	6	0	0	0	0	0	0
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+FFQ	216	0	0	0	0	0	0	0	0	0	0	0	0	3	3	6	5	0	0	0	0	0	0	0	0	3	6	5	1	3	0	1	0	5	15	1	3	2	37	1	0	0	0
+FFQ	217	0	0	0	0	0	0	0	0	0	0	0	0	3	7	6	4	0	0	0	0	0	0	0	0	4	1	2	0	0	1	1	0	10	15	1	3	2	39	1	0	0	0
+FFQ	218	0	0	0	0	0	0	0	0	0	0	0	0	2	4	7	2	0	0	0	0	0	0	0	0	6	4	10	0	0	0	1	0	3	13	1	5	3	35	4	0	0	0
+FFQ	219	0	0	0	0	0	0	0	0	0	0	0	0	2	5	4	4	0	0	0	0	0	0	0	0	5	1	5	0	0	1	0	0	4	13	1	6	3	45	1	0	0	0
+FFQ	220	0	0	0	0	0	0	0	0	0	0	0	0	2	4	9	4	0	0	0	0	0	0	0	0	4	2	2	0	0	0	0	2	5	14	1	1	2	47	1	0	0	0
+FFQ	221	0	0	0	0	0	0	0	0	0	0	0	0	3	4	6	4	0	0	0	0	0	0	0	0	1	4	6	0	0	0	0	0	2	10	1	3	3	53	0	0	0	0
+FFQ	222	0	0	0	0	0	0	0	0	0	0	0	0	3	5	8	6	0	0	0	0	0	0	0	0	5	2	6	0	0	0	0	0	2	6	1	3	4	49	0	0	0	0
+FFQ	223	0	0	0	0	0	0	0	0	0	0	0	0	5	8	6	8	0	0	0	0	0	0	0	0	3	3	5	1	1	0	1	0	0	13	1	0	2	43	0	0	0	0
+FFQ	224	0	0	0	0	0	0	0	0	0	0	0	0	2	9	11	6	0	0	0	0	0	0	0	0	4	3	3	0	0	0	0	1	2	15	1	0	1	42	0	0	0	0
+FFQ	225	0	0	0	0	0	0	0	0	0	0	0	0	4	8	2	4	0	0	0	0	0	0	0	0	7	3	10	0	2	0	0	0	3	10	1	2	5	39	0	0	0	0
+FFQ	226	0	0	0	0	0	0	0	0	0	0	0	0	5	9	3	7	0	0	0	0	0	0	0	0	8	5	5	0	1	0	2	1	3	13	0	2	3	33	0	0	0	0
+FFQ	227	0	0	0	0	0	0	0	0	0	0	0	0	10	8	4	5	0	0	0	0	0	0	0	0	3	2	3	0	0	0	2	3	5	17	0	3	2	33	0	0	0	0
+FFQ	228	0	0	0	0	0	0	0	0	0	0	0	0	10	8	6	2	0	0	0	0	0	0	0	0	6	1	6	0	1	2	1	1	4	13	1	2	1	35	0	0	0	0
+FFQ	229	0	0	0	0	0	0	0	0	0	0	0	0	4	11	6	6	0	0	0	0	0	0	0	0	1	3	5	0	0	0	0	2	6	13	0	3	5	35	0	0	0	0
+FFQ	230	0	0	0	0	0	0	0	0	0	0	0	0	4	11	10	7	0	0	0	0	0	0	0	0	2	3	4	0	0	0	1	2	9	10	0	1	1	35	0	0	0	0
+FFQ	231	0	0	0	0	0	0	0	0	0	0	0	0	6	7	6	6	0	0	0	0	0	0	0	0	4	5	4	0	1	0	1	0	4	13	1	5	5	32	0	0	0	0
+FFQ	232	0	0	0	0	0	0	0	0	0	0	0	0	3	7	10	4	0	0	0	0	0	0	0	0	6	4	7	0	0	0	0	0	3	12	0	1	3	40	0	0	0	0
+FFQ	233	0	0	0	0	0	0	0	0	0	0	0	0	7	7	9	8	0	0	0	0	0	0	0	0	5	5	3	1	1	0	0	0	6	10	1	1	4	32	0	0	0	0
+FFQ	234	0	0	0	0	0	0	0	0	0	0	0	0	9	6	10	5	0	0	0	0	0	0	0	0	5	5	3	1	0	0	0	1	5	11	0	1	4	34	0	0	0	0
+FFQ	235	0	0	0	0	0	0	0	0	0	0	0	0	4	10	13	7	0	0	0	0	0	0	0	0	5	1	4	0	0	0	2	1	5	7	0	0	4	37	0	0	0	0
+FFQ	236	0	0	0	0	0	0	0	0	0	0	0	0	7	8	15	6	0	0	0	0	0	0	0	0	7	3	5	1	0	0	0	1	6	8	0	1	1	31	0	0	0	0
+FFQ	237	0	0	0	0	0	0	0	0	0	0	0	0	2	9	13	6	0	0	0	0	0	0	0	0	6	4	7	1	0	0	0	1	3	12	0	1	1	34	0	0	0	0
+FFQ	238	0	0	0	0	0	0	0	0	0	0	0	0	2	10	16	6	0	0	0	0	0	0	0	0	9	2	3	0	0	0	0	0	5	9	0	2	3	33	0	0	0	0
+FFQ	239	0	0	0	0	0	0	0	0	0	0	0	0	4	5	17	9	0	0	0	0	0	0	0	0	7	3	1	0	0	0	1	1	2	15	0	1	3	31	0	0	0	0
+FFQ	240	0	0	0	0	0	0	0	0	0	0	0	0	0	10	19	6	0	0	0	0	0	0	0	0	6	4	4	0	0	1	3	0	2	13	0	1	1	30	0	0	0	0
+FFQ	241	0	0	0	0	0	0	0	0	0	0	0	0	1	4	23	9	0	0	0	0	0	0	0	0	7	5	8	1	0	0	2	1	1	8	0	1	3	26	0	0	0	0
+FFQ	242	0	0	0	0	0	0	0	0	0	0	0	0	3	10	19	10	0	0	0	0	0	0	0	0	2	5	4	1	0	0	0	1	2	10	0	0	2	31	0	0	0	0
+FFQ	243	0	0	0	0	0	0	0	0	0	0	0	0	2	2	17	14	0	0	0	0	0	0	0	0	6	5	5	0	0	0	0	0	6	13	0	2	3	25	0	0	0	0
+FFQ	244	0	0	0	0	0	0	0	0	0	0	0	0	1	3	18	11	0	0	0	0	0	0	0	0	6	5	5	1	0	0	1	0	2	12	0	5	1	29	0	0	0	0
+FFQ	245	0	0	0	0	0	0	0	0	0	0	0	0	1	8	14	11	0	0	0	0	0	0	0	0	8	5	3	1	0	0	1	0	1	15	1	1	3	27	0	0	0	0
+FFQ	246	0	0	0	0	0	0	0	0	0	0	0	0	4	6	15	12	0	0	0	0	0	0	0	0	5	2	8	1	0	1	1	0	1	13	0	2	1	28	0	0	0	0
+FFQ	247	0	0	0	0	0	0	0	0	0	0	0	0	8	3	16	14	0	0	0	0	0	0	0	0	10	4	6	0	0	0	0	0	2	15	1	2	2	17	0	0	0	0
+FFQ	248	0	0	0	0	0	0	0	0	0	0	0	0	5	6	21	8	0	0	0	0	0	0	0	0	7	8	6	2	0	0	0	1	1	14	0	2	2	17	0	0	0	0
+FFQ	249	0	0	0	0	0	0	0	0	0	0	0	0	5	6	20	8	0	0	0	0	0	0	0	0	5	7	10	0	1	0	0	0	1	15	0	2	0	20	0	0	0	0
+FFQ	250	0	0	0	0	0	0	0	0	0	0	0	0	2	10	15	10	0	0	0	0	0	0	0	0	9	5	8	1	0	0	0	2	6	10	0	0	2	20	0	0	0	0
+FFQ	251	0	0	0	0	0	0	0	0	0	0	0	0	7	20	21	17	0	0	0	0	0	0	0	0	7	7	6	0	0	0	0	1	2	4	0	0	0	8	0	0	0	0
+FFQ	252	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+# Last Fragment Qualitites. Use `grep ^LFQ | cut -f 2-` to extract this part.
+# Columns correspond to qualities and rows to cycles. First column is the cycle number.
+LFQ	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	3	2	0	20	38	32	1	0	0	0	0	0	0
+LFQ	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	18	36	36	6	0	0	0	0	0	0
+LFQ	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	14	31	46	5	0	0	0	0	0	0
+LFQ	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	8	36	42	11	0	0	0	0	0	0
+LFQ	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	12	35	43	6	0	0	0	0	0	0
+LFQ	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	7	8	0	0	81	0	0	0	0
+LFQ	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	13	1	0	76	0	0	0	0
+LFQ	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	11	15	4	0	69	0	0	0	0
+LFQ	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	6	20	3	0	68	0	0	0	0
+LFQ	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	11	5	0	75	0	0	0	0
+LFQ	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	16	6	0	70	0	0	0	0
+LFQ	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	8	2	0	86	0	0	0	0
+LFQ	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	92	0	0	0
+LFQ	14	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	1	0	3	89	0	0	0
+LFQ	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	4	91	0	0	0
+LFQ	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	96	0	0	0
+LFQ	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	3	94	0	0	0
+LFQ	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	2	93	0	0	0
+LFQ	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	4	93	0	0	0
+LFQ	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	4	91	0	0	0
+LFQ	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	3	94	0	0	0
+LFQ	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	97	0	0	0
+LFQ	23	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	4	18	74	0	0
+LFQ	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	19	76	0	0
+LFQ	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	4	15	76	0	0
+LFQ	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	2	18	75	0	0
+LFQ	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	12	84	0	0
+LFQ	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	5	16	74	0	0
+LFQ	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	6	19	73	0	0
+LFQ	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	12	17	67	0	0
+LFQ	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	1	2	15	77	0	0
+LFQ	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	7	22	68	0	0
+LFQ	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	1	3	18	73	0	0
+LFQ	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	7	19	72	0	0
+LFQ	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	2	23	71	0	0
+LFQ	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	26	69	0	0
+LFQ	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	3	0	6	23	65	0	0
+LFQ	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	31	63	0	0
+LFQ	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	5	33	56	0	0
+LFQ	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	3	1	1	7	25	60	0	0
+LFQ	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	1	7	19	67	0	0
+LFQ	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	7	21	68	0	0
+LFQ	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	4	5	28	56	0	0
+LFQ	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	1	2	13	29	49	0	0
+LFQ	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	7	31	57	0	0
+LFQ	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	4	2	8	34	49	0	0
+LFQ	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	1	1	0	8	22	63	0	0
+LFQ	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	7	24	64	0	0
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+LFQ	227	0	0	0	0	0	0	0	0	0	0	0	0	10	8	4	5	0	0	0	0	0	0	0	0	3	2	3	0	0	0	2	3	5	17	0	3	2	33	0	0	0	0
+LFQ	228	0	0	0	0	0	0	0	0	0	0	0	0	10	8	6	2	0	0	0	0	0	0	0	0	6	1	6	0	1	2	1	1	4	13	1	2	1	35	0	0	0	0
+LFQ	229	0	0	0	0	0	0	0	0	0	0	0	0	4	11	6	6	0	0	0	0	0	0	0	0	1	3	5	0	0	0	0	2	6	13	0	3	5	35	0	0	0	0
+LFQ	230	0	0	0	0	0	0	0	0	0	0	0	0	4	11	10	7	0	0	0	0	0	0	0	0	2	3	4	0	0	0	1	2	9	10	0	1	1	35	0	0	0	0
+LFQ	231	0	0	0	0	0	0	0	0	0	0	0	0	6	7	6	6	0	0	0	0	0	0	0	0	4	5	4	0	1	0	1	0	4	13	1	5	5	32	0	0	0	0
+LFQ	232	0	0	0	0	0	0	0	0	0	0	0	0	3	7	10	4	0	0	0	0	0	0	0	0	6	4	7	0	0	0	0	0	3	12	0	1	3	40	0	0	0	0
+LFQ	233	0	0	0	0	0	0	0	0	0	0	0	0	7	7	9	8	0	0	0	0	0	0	0	0	5	5	3	1	1	0	0	0	6	10	1	1	4	32	0	0	0	0
+LFQ	234	0	0	0	0	0	0	0	0	0	0	0	0	9	6	10	5	0	0	0	0	0	0	0	0	5	5	3	1	0	0	0	1	5	11	0	1	4	34	0	0	0	0
+LFQ	235	0	0	0	0	0	0	0	0	0	0	0	0	4	10	13	7	0	0	0	0	0	0	0	0	5	1	4	0	0	0	2	1	5	7	0	0	4	37	0	0	0	0
+LFQ	236	0	0	0	0	0	0	0	0	0	0	0	0	7	8	15	6	0	0	0	0	0	0	0	0	7	3	5	1	0	0	0	1	6	8	0	1	1	31	0	0	0	0
+LFQ	237	0	0	0	0	0	0	0	0	0	0	0	0	2	9	13	6	0	0	0	0	0	0	0	0	6	4	7	1	0	0	0	1	3	12	0	1	1	34	0	0	0	0
+LFQ	238	0	0	0	0	0	0	0	0	0	0	0	0	2	10	16	6	0	0	0	0	0	0	0	0	9	2	3	0	0	0	0	0	5	9	0	2	3	33	0	0	0	0
+LFQ	239	0	0	0	0	0	0	0	0	0	0	0	0	4	5	17	9	0	0	0	0	0	0	0	0	7	3	1	0	0	0	1	1	2	15	0	1	3	31	0	0	0	0
+LFQ	240	0	0	0	0	0	0	0	0	0	0	0	0	0	10	19	6	0	0	0	0	0	0	0	0	6	4	4	0	0	1	3	0	2	13	0	1	1	30	0	0	0	0
+LFQ	241	0	0	0	0	0	0	0	0	0	0	0	0	1	4	23	9	0	0	0	0	0	0	0	0	7	5	8	1	0	0	2	1	1	8	0	1	3	26	0	0	0	0
+LFQ	242	0	0	0	0	0	0	0	0	0	0	0	0	3	10	19	10	0	0	0	0	0	0	0	0	2	5	4	1	0	0	0	1	2	10	0	0	2	31	0	0	0	0
+LFQ	243	0	0	0	0	0	0	0	0	0	0	0	0	2	2	17	14	0	0	0	0	0	0	0	0	6	5	5	0	0	0	0	0	6	13	0	2	3	25	0	0	0	0
+LFQ	244	0	0	0	0	0	0	0	0	0	0	0	0	1	3	18	11	0	0	0	0	0	0	0	0	6	5	5	1	0	0	1	0	2	12	0	5	1	29	0	0	0	0
+LFQ	245	0	0	0	0	0	0	0	0	0	0	0	0	1	8	14	11	0	0	0	0	0	0	0	0	8	5	3	1	0	0	1	0	1	15	1	1	3	27	0	0	0	0
+LFQ	246	0	0	0	0	0	0	0	0	0	0	0	0	4	6	15	12	0	0	0	0	0	0	0	0	5	2	8	1	0	1	1	0	1	13	0	2	1	28	0	0	0	0
+LFQ	247	0	0	0	0	0	0	0	0	0	0	0	0	8	3	16	14	0	0	0	0	0	0	0	0	10	4	6	0	0	0	0	0	2	15	1	2	2	17	0	0	0	0
+LFQ	248	0	0	0	0	0	0	0	0	0	0	0	0	5	6	21	8	0	0	0	0	0	0	0	0	7	8	6	2	0	0	0	1	1	14	0	2	2	17	0	0	0	0
+LFQ	249	0	0	0	0	0	0	0	0	0	0	0	0	5	6	20	8	0	0	0	0	0	0	0	0	5	7	10	0	1	0	0	0	1	15	0	2	0	20	0	0	0	0
+LFQ	250	0	0	0	0	0	0	0	0	0	0	0	0	2	10	15	10	0	0	0	0	0	0	0	0	9	5	8	1	0	0	0	2	6	10	0	0	2	20	0	0	0	0
+LFQ	251	0	0	0	0	0	0	0	0	0	0	0	0	7	20	21	17	0	0	0	0	0	0	0	0	7	7	6	0	0	0	0	1	2	4	0	0	0	8	0	0	0	0
+LFQ	252	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+# Mismatches per cycle and quality. Use `grep ^MPC | cut -f 2-` to extract this part.
+# Columns correspond to qualities, rows to cycles. First column is the cycle number, second
+# is the number of N's and the rest is the number of mismatches
+MPC	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0
+MPC	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0
+MPC	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0
+MPC	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0
+MPC	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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+MPC	236	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+MPC	237	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+MPC	238	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	239	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+MPC	240	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	241	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	242	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
+MPC	243	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	244	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	245	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	246	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+MPC	247	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0
+MPC	248	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	2	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	2	0	0	0	3	0	0	0
+MPC	249	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	2	0	5	0	0	0	0	0	0	2	0	0	0	0	0	0	0
+MPC	250	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	0	0	0	2	0	0	0
+MPC	251	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	3	0	0	0
+MPC	252	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
+# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part.
+GCF	21.86	0
+GCF	44.22	2
+GCF	44.97	8
+GCF	45.48	4
+GCF	45.98	3
+GCF	46.48	5
+GCF	46.98	2
+GCF	47.49	3
+GCF	47.99	12
+GCF	48.49	13
+GCF	48.99	9
+GCF	49.50	2
+GCF	50.25	3
+GCF	51.01	6
+GCF	51.51	4
+GCF	52.01	1
+GCF	52.51	0
+GCF	53.02	1
+# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part.
+GCL	21.86	0
+GCL	44.22	2
+GCL	44.97	8
+GCL	45.48	4
+GCL	45.98	3
+GCL	46.48	5
+GCL	46.98	2
+GCL	47.49	3
+GCL	47.99	12
+GCL	48.49	13
+GCL	48.99	9
+GCL	49.50	2
+GCL	50.25	3
+GCL	51.01	6
+GCL	51.51	4
+GCL	52.01	1
+GCL	52.51	0
+GCL	53.02	1
+# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
+GCC	1	21.94	30.10	34.18	13.78	2.04	0.00
+GCC	2	30.00	16.00	11.00	43.00	0.00	0.00
+GCC	3	33.00	25.00	9.00	33.00	0.00	0.00
+GCC	4	17.00	29.00	13.00	41.00	0.00	0.00
+GCC	5	37.00	22.00	12.00	29.00	0.00	0.00
+GCC	6	36.00	26.00	17.00	21.00	0.00	0.00
+GCC	7	29.50	13.50	31.50	25.50	0.00	0.00
+GCC	8	50.50	14.50	19.50	15.50	0.00	0.00
+GCC	9	17.00	33.00	18.00	32.00	0.00	0.00
+GCC	10	37.00	14.00	21.00	28.00	0.00	0.00
+GCC	11	20.50	14.50	29.50	35.50	0.00	0.00
+GCC	12	30.00	24.00	22.00	24.00	0.00	0.00
+GCC	13	27.00	15.00	21.00	37.00	0.00	0.00
+GCC	14	24.24	22.22	26.26	27.27	1.01	0.00
+GCC	15	25.50	20.50	24.50	29.50	0.00	0.00
+GCC	16	31.00	15.00	20.00	34.00	0.00	0.00
+GCC	17	28.00	25.00	14.00	33.00	0.00	0.00
+GCC	18	30.50	28.50	19.50	21.50	0.00	0.00
+GCC	19	29.00	26.00	21.00	24.00	0.00	0.00
+GCC	20	22.50	23.50	17.50	36.50	0.00	0.00
+GCC	21	35.50	17.50	19.50	27.50	0.00	0.00
+GCC	22	37.50	28.50	15.50	18.50	0.00	0.00
+GCC	23	31.31	19.19	13.13	36.36	1.01	0.00
+GCC	24	37.00	12.00	22.00	29.00	0.00	0.00
+GCC	25	35.50	22.50	17.50	24.50	0.00	0.00
+GCC	26	33.50	18.50	15.50	32.50	0.00	0.00
+GCC	27	34.50	14.50	25.50	25.50	0.00	0.00
+GCC	28	31.00	14.00	24.00	31.00	0.00	0.00
+GCC	29	30.00	27.00	24.00	19.00	0.00	0.00
+GCC	30	31.00	20.00	14.00	35.00	0.00	0.00
+GCC	31	33.50	29.50	13.50	23.50	0.00	0.00
+GCC	32	42.50	20.50	19.50	17.50	0.00	0.00
+GCC	33	25.50	23.50	14.50	36.50	0.00	0.00
+GCC	34	39.50	16.50	20.50	23.50	0.00	0.00
+GCC	35	32.50	23.50	21.50	22.50	0.00	0.00
+GCC	36	42.00	25.00	16.00	17.00	0.00	0.00
+GCC	37	38.00	17.00	19.00	26.00	0.00	0.00
+GCC	38	24.00	26.00	25.00	25.00	0.00	0.00
+GCC	39	22.50	41.50	18.50	17.50	0.00	0.00
+GCC	40	32.00	16.00	21.00	31.00	0.00	0.00
+GCC	41	33.00	28.00	19.00	20.00	0.00	0.00
+GCC	42	30.50	25.50	19.50	24.50	0.00	0.00
+GCC	43	35.00	29.00	15.00	21.00	0.00	0.00
+GCC	44	20.00	27.00	22.00	31.00	0.00	0.00
+GCC	45	40.50	21.50	21.50	16.50	0.00	0.00
+GCC	46	26.50	20.50	22.50	30.50	0.00	0.00
+GCC	47	38.50	29.50	16.50	15.50	0.00	0.00
+GCC	48	27.50	24.50	17.50	30.50	0.00	0.00
+GCC	49	28.50	32.50	10.50	28.50	0.00	0.00
+GCC	50	46.50	20.50	9.50	23.50	0.00	0.00
+GCC	51	34.50	28.50	13.50	23.50	0.00	0.00
+GCC	52	41.50	23.50	20.50	14.50	0.00	0.00
+GCC	53	20.00	28.00	26.00	26.00	0.00	0.00
+GCC	54	31.50	18.50	24.50	25.50	0.00	0.00
+GCC	55	30.50	22.50	16.50	30.50	0.00	0.00
+GCC	56	33.50	22.50	13.50	30.50	0.00	0.00
+GCC	57	23.00	24.00	23.00	30.00	0.00	0.00
+GCC	58	25.00	37.00	19.00	19.00	0.00	0.00
+GCC	59	34.00	23.00	24.00	19.00	0.00	0.00
+GCC	60	29.00	28.00	17.00	26.00	0.00	0.00
+GCC	61	25.50	23.50	24.50	26.50	0.00	0.00
+GCC	62	31.50	22.50	16.50	29.50	0.00	0.00
+GCC	63	27.50	28.50	25.50	18.50	0.00	0.00
+GCC	64	33.50	21.50	25.50	19.50	0.00	0.00
+GCC	65	35.50	19.50	18.50	26.50	0.00	0.00
+GCC	66	34.00	25.00	15.00	26.00	0.00	0.00
+GCC	67	37.00	23.00	19.00	21.00	0.00	0.00
+GCC	68	36.50	29.50	13.50	20.50	0.00	0.00
+GCC	69	38.50	19.50	20.50	21.50	0.00	0.00
+GCC	70	38.50	16.50	18.50	26.50	0.00	0.00
+GCC	71	25.50	38.50	21.50	14.50	0.00	0.00
+GCC	72	29.00	29.00	25.00	17.00	0.00	0.00
+GCC	73	32.50	20.50	21.50	25.50	0.00	0.00
+GCC	74	28.50	32.50	12.50	26.50	0.00	0.00
+GCC	75	41.50	12.50	18.50	27.50	0.00	0.00
+GCC	76	24.50	29.50	23.50	22.50	0.00	0.00
+GCC	77	36.00	21.00	18.00	25.00	0.00	0.00
+GCC	78	27.00	34.00	22.00	17.00	0.00	0.00
+GCC	79	21.50	26.50	25.50	26.50	0.00	0.00
+GCC	80	34.00	19.00	28.00	19.00	0.00	0.00
+GCC	81	17.00	26.00	26.00	31.00	0.00	0.00
+GCC	82	31.00	30.00	23.00	16.00	0.00	0.00
+GCC	83	31.50	26.50	12.50	29.50	0.00	0.00
+GCC	84	19.00	41.00	21.00	19.00	0.00	0.00
+GCC	85	37.50	24.50	16.50	21.50	0.00	0.00
+GCC	86	15.00	48.00	15.00	22.00	0.00	0.00
+GCC	87	41.00	16.00	18.00	25.00	0.00	0.00
+GCC	88	23.50	27.50	27.50	21.50	0.00	0.00
+GCC	89	26.50	27.50	26.50	19.50	0.00	0.00
+GCC	90	18.50	23.50	24.50	33.50	0.00	0.00
+GCC	91	27.00	32.00	22.00	19.00	0.00	0.00
+GCC	92	23.50	17.50	27.50	31.50	0.00	0.00
+GCC	93	25.50	37.50	15.50	21.50	0.00	0.00
+GCC	94	27.00	17.00	24.00	32.00	0.00	0.00
+GCC	95	26.77	37.88	14.65	20.71	1.01	0.00
+GCC	96	29.50	25.50	16.50	28.50	0.00	0.00
+GCC	97	29.00	31.00	21.00	19.00	0.00	0.00
+GCC	98	18.18	33.33	22.22	26.26	1.01	0.00
+GCC	99	24.50	33.50	24.50	17.50	0.00	0.00
+GCC	100	24.50	16.50	24.50	34.50	0.00	0.00
+GCC	101	25.00	40.00	19.00	16.00	0.00	0.00
+GCC	102	17.50	17.50	32.50	32.50	0.00	0.00
+GCC	103	31.00	26.00	16.00	27.00	0.00	0.00
+GCC	104	26.50	29.50	20.50	23.50	0.00	0.00
+GCC	105	34.00	33.00	21.00	12.00	0.00	0.00
+GCC	106	23.00	31.00	26.00	20.00	0.00	0.00
+GCC	107	17.68	35.86	23.74	22.73	1.01	0.00
+GCC	108	24.75	30.81	23.74	20.71	1.01	0.00
+GCC	109	17.00	31.00	22.00	30.00	0.00	0.00
+GCC	110	16.16	35.35	24.24	24.24	1.01	0.00
+GCC	111	24.24	32.32	23.23	20.20	1.01	0.00
+GCC	112	37.37	28.28	16.16	18.18	1.01	0.00
+GCC	113	19.70	22.73	32.83	24.75	1.01	0.00
+GCC	114	17.00	31.00	35.00	17.00	0.00	0.00
+GCC	115	29.50	24.50	23.50	22.50	0.00	0.00
+GCC	116	22.00	30.00	34.00	14.00	0.00	0.00
+GCC	117	27.00	23.00	19.00	31.00	0.00	0.00
+GCC	118	25.50	14.50	34.50	25.50	0.00	0.00
+GCC	119	22.50	34.50	20.50	22.50	0.00	0.00
+GCC	120	17.50	24.50	26.50	31.50	0.00	0.00
+GCC	121	27.78	33.84	22.73	15.66	1.01	0.00
+GCC	122	17.00	23.00	25.00	35.00	0.00	0.00
+GCC	123	23.50	46.50	11.50	18.50	0.00	0.00
+GCC	124	9.00	32.00	34.00	25.00	0.00	0.00
+GCC	125	24.00	27.00	19.00	30.00	0.00	0.00
+GCC	126	26.00	17.00	28.00	29.00	0.00	0.00
+GCC	127	26.50	16.50	21.50	35.50	0.00	0.00
+GCC	128	18.00	34.00	31.00	17.00	0.00	0.00
+GCC	129	25.50	25.50	27.50	21.50	0.00	0.00
+GCC	130	25.00	20.00	22.00	33.00	0.00	0.00
+GCC	131	17.50	39.50	24.50	18.50	0.00	0.00
+GCC	132	21.00	28.00	23.00	28.00	0.00	0.00
+GCC	133	13.50	31.50	35.50	19.50	0.00	0.00
+GCC	134	24.50	19.50	30.50	25.50	0.00	0.00
+GCC	135	16.50	23.50	30.50	29.50	0.00	0.00
+GCC	136	28.00	32.00	15.00	25.00	0.00	0.00
+GCC	137	22.50	21.50	30.50	25.50	0.00	0.00
+GCC	138	14.50	34.50	24.50	26.50	0.00	0.00
+GCC	139	20.50	29.50	24.50	25.50	0.00	0.00
+GCC	140	17.00	23.00	30.00	30.00	0.00	0.00
+GCC	141	20.50	23.50	25.50	30.50	0.00	0.00
+GCC	142	18.00	29.00	38.00	15.00	0.00	0.00
+GCC	143	22.00	24.00	27.00	27.00	0.00	0.00
+GCC	144	21.50	30.50	26.50	21.50	0.00	0.00
+GCC	145	22.00	21.00	29.00	28.00	0.00	0.00
+GCC	146	25.00	16.00	39.00	20.00	0.00	0.00
+GCC	147	26.50	22.50	30.50	20.50	0.00	0.00
+GCC	148	12.50	28.50	36.50	22.50	0.00	0.00
+GCC	149	26.50	23.50	23.50	26.50	0.00	0.00
+GCC	150	14.00	29.00	24.00	33.00	0.00	0.00
+GCC	151	19.50	30.50	32.50	17.50	0.00	0.00
+GCC	152	18.50	17.50	29.50	34.50	0.00	0.00
+GCC	153	22.50	22.50	31.50	23.50	0.00	0.00
+GCC	154	22.00	21.00	29.00	28.00	0.00	0.00
+GCC	155	21.00	26.00	19.00	34.00	0.00	0.00
+GCC	156	14.50	23.50	35.50	26.50	0.00	0.00
+GCC	157	22.00	31.00	23.00	24.00	0.00	0.00
+GCC	158	22.50	29.50	24.50	23.50	0.00	0.00
+GCC	159	17.50	12.50	46.50	23.50	0.00	0.00
+GCC	160	24.50	26.50	26.50	22.50	0.00	0.00
+GCC	161	13.00	23.00	45.00	19.00	0.00	0.00
+GCC	162	31.50	16.50	22.50	29.50	0.00	0.00
+GCC	163	19.50	21.50	35.50	23.50	0.00	0.00
+GCC	164	29.00	18.00	21.00	32.00	0.00	0.00
+GCC	165	14.50	17.50	35.50	32.50	0.00	0.00
+GCC	166	17.50	37.50	28.50	16.50	0.00	0.00
+GCC	167	16.50	21.50	31.50	30.50	0.00	0.00
+GCC	168	14.00	25.00	30.00	31.00	0.00	0.00
+GCC	169	18.50	20.50	23.50	37.50	0.00	0.00
+GCC	170	19.00	23.00	28.00	30.00	0.00	0.00
+GCC	171	20.00	28.00	33.00	19.00	0.00	0.00
+GCC	172	19.00	20.00	32.00	29.00	0.00	0.00
+GCC	173	24.50	16.50	33.50	25.50	0.00	0.00
+GCC	174	17.50	23.50	33.50	25.50	0.00	0.00
+GCC	175	33.50	17.50	35.50	13.50	0.00	0.00
+GCC	176	16.50	32.50	28.50	22.50	0.00	0.00
+GCC	177	19.00	22.00	27.00	32.00	0.00	0.00
+GCC	178	16.00	26.00	30.00	28.00	0.00	0.00
+GCC	179	18.00	18.00	22.00	42.00	0.00	0.00
+GCC	180	21.00	22.00	34.00	23.00	0.00	0.00
+GCC	181	20.50	19.50	35.50	24.50	0.00	0.00
+GCC	182	32.50	18.50	22.50	26.50	0.00	0.00
+GCC	183	24.50	13.50	28.50	33.50	0.00	0.00
+GCC	184	15.00	29.00	30.00	26.00	0.00	0.00
+GCC	185	15.00	32.00	33.00	20.00	0.00	0.00
+GCC	186	22.50	23.50	34.50	19.50	0.00	0.00
+GCC	187	19.00	14.00	40.00	27.00	0.00	0.00
+GCC	188	27.50	21.50	27.50	23.50	0.00	0.00
+GCC	189	17.00	22.00	34.00	27.00	0.00	0.00
+GCC	190	23.00	30.00	23.00	24.00	0.00	0.00
+GCC	191	25.00	22.00	28.00	25.00	0.00	0.00
+GCC	192	34.50	24.50	13.50	27.50	0.00	0.00
+GCC	193	18.50	25.50	25.50	30.50	0.00	0.00
+GCC	194	18.50	33.50	24.50	23.50	0.00	0.00
+GCC	195	16.00	26.00	23.00	35.00	0.00	0.00
+GCC	196	21.50	25.50	24.50	28.50	0.00	0.00
+GCC	197	20.00	21.00	23.00	36.00	0.00	0.00
+GCC	198	17.00	21.00	37.00	25.00	0.00	0.00
+GCC	199	20.50	18.50	25.50	35.50	0.00	0.00
+GCC	200	21.00	29.00	21.00	29.00	0.00	0.00
+GCC	201	27.00	21.00	23.00	29.00	0.00	0.00
+GCC	202	21.50	24.50	19.50	34.50	0.00	0.00
+GCC	203	21.50	24.50	26.50	27.50	0.00	0.00
+GCC	204	27.00	29.00	24.00	20.00	0.00	0.00
+GCC	205	19.50	21.50	22.50	36.50	0.00	0.00
+GCC	206	26.50	24.50	21.50	27.50	0.00	0.00
+GCC	207	22.50	21.50	19.50	36.50	0.00	0.00
+GCC	208	14.00	35.00	29.00	22.00	0.00	0.00
+GCC	209	16.00	23.00	12.00	49.00	0.00	0.00
+GCC	210	18.50	19.50	40.50	21.50	0.00	0.00
+GCC	211	26.00	20.00	22.00	32.00	0.00	0.00
+GCC	212	21.00	31.00	18.00	30.00	0.00	0.00
+GCC	213	24.00	15.00	31.00	30.00	0.00	0.00
+GCC	214	17.50	24.50	25.50	32.50	0.00	0.00
+GCC	215	26.00	24.00	23.00	27.00	0.00	0.00
+GCC	216	21.50	17.50	25.50	35.50	0.00	0.00
+GCC	217	26.00	29.00	17.00	28.00	0.00	0.00
+GCC	218	20.00	27.00	21.00	32.00	0.00	0.00
+GCC	219	17.00	21.00	21.00	41.00	0.00	0.00
+GCC	220	25.50	23.50	23.50	27.50	0.00	0.00
+GCC	221	21.50	23.50	20.50	34.50	0.00	0.00
+GCC	222	21.50	21.50	18.50	38.50	0.00	0.00
+GCC	223	20.00	27.00	28.00	25.00	0.00	0.00
+GCC	224	22.50	22.50	24.50	30.50	0.00	0.00
+GCC	225	14.50	35.50	30.50	19.50	0.00	0.00
+GCC	226	20.00	23.00	26.00	31.00	0.00	0.00
+GCC	227	20.50	24.50	23.50	31.50	0.00	0.00
+GCC	228	33.00	19.00	26.00	22.00	0.00	0.00
+GCC	229	22.50	24.50	18.50	34.50	0.00	0.00
+GCC	230	21.00	32.00	16.00	31.00	0.00	0.00
+GCC	231	23.00	28.00	30.00	19.00	0.00	0.00
+GCC	232	23.50	21.50	12.50	42.50	0.00	0.00
+GCC	233	21.00	27.00	25.00	27.00	0.00	0.00
+GCC	234	16.50	27.50	22.50	33.50	0.00	0.00
+GCC	235	20.00	15.00	28.00	37.00	0.00	0.00
+GCC	236	28.00	23.00	21.00	28.00	0.00	0.00
+GCC	237	20.50	19.50	22.50	37.50	0.00	0.00
+GCC	238	21.50	29.50	24.50	24.50	0.00	0.00
+GCC	239	20.00	8.00	17.00	55.00	0.00	0.00
+GCC	240	28.00	24.00	16.00	32.00	0.00	0.00
+GCC	241	22.50	22.50	16.50	38.50	0.00	0.00
+GCC	242	29.00	25.00	13.00	33.00	0.00	0.00
+GCC	243	22.50	15.50	23.50	38.50	0.00	0.00
+GCC	244	20.50	23.50	16.50	39.50	0.00	0.00
+GCC	245	28.00	23.00	19.00	30.00	0.00	0.00
+GCC	246	21.00	29.00	25.00	25.00	0.00	0.00
+GCC	247	32.00	14.00	13.00	41.00	0.00	0.00
+GCC	248	18.00	18.00	25.00	39.00	0.00	0.00
+GCC	249	25.00	23.00	21.00	31.00	0.00	0.00
+GCC	250	27.50	22.50	17.50	32.50	0.00	0.00
+GCC	251	13.50	20.50	36.50	29.50	0.00	0.00
+# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
+# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
+RL	251	200
+# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
+ID	1	1	0
+ID	2	1	0
+ID	4	2	0
+ID	10	5	0
+ID	13	1	0
+ID	14	1	0
+ID	15	1	0
+ID	18	1	0
+ID	21	1	0
+ID	22	1	0
+ID	23	2	0
+ID	24	3	0
+ID	29	1	0
+ID	35	2	0
+ID	38	2	0
+# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev)
+IC	2	1	0	0	0
+IC	4	2	0	0	0
+IC	5	3	0	0	0
+IC	210	2	0	0	0
+IC	219	1	0	0	0
+IC	220	1	0	0	0
+IC	224	2	0	0	0
+IC	225	2	0	0	0
+IC	226	1	0	0	0
+IC	228	1	0	0	0
+IC	230	1	0	0	0
+IC	233	1	0	0	0
+IC	234	1	0	0	0
+IC	235	1	0	0	0
+IC	236	1	0	0	0
+IC	239	1	0	0	0
+IC	240	1	0	0	0
+IC	241	1	0	0	0
+IC	247	1	0	0	0
+# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part.
+COV	[1-1]	1	1
+COV	[7-7]	7	1
+COV	[18-18]	18	1
+COV	[24-24]	24	1
+COV	[25-25]	25	249
+# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile
+GCD	0.0	100.000	0.000	0.000	0.000	0.000	0.000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/samtools_stats_out2__gcc.tab	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,252 @@
+# ACGT content per cycle. The columns are: cycle, and A,C,G,T counts (percent)
+1	21.94	30.10	34.18	13.78	2.04	0.00
+2	30.00	16.00	11.00	43.00	0.00	0.00
+3	33.00	25.00	9.00	33.00	0.00	0.00
+4	17.00	29.00	13.00	41.00	0.00	0.00
+5	37.00	22.00	12.00	29.00	0.00	0.00
+6	36.00	26.00	17.00	21.00	0.00	0.00
+7	29.50	13.50	31.50	25.50	0.00	0.00
+8	50.50	14.50	19.50	15.50	0.00	0.00
+9	17.00	33.00	18.00	32.00	0.00	0.00
+10	37.00	14.00	21.00	28.00	0.00	0.00
+11	20.50	14.50	29.50	35.50	0.00	0.00
+12	30.00	24.00	22.00	24.00	0.00	0.00
+13	27.00	15.00	21.00	37.00	0.00	0.00
+14	24.24	22.22	26.26	27.27	1.01	0.00
+15	25.50	20.50	24.50	29.50	0.00	0.00
+16	31.00	15.00	20.00	34.00	0.00	0.00
+17	28.00	25.00	14.00	33.00	0.00	0.00
+18	30.50	28.50	19.50	21.50	0.00	0.00
+19	29.00	26.00	21.00	24.00	0.00	0.00
+20	22.50	23.50	17.50	36.50	0.00	0.00
+21	35.50	17.50	19.50	27.50	0.00	0.00
+22	37.50	28.50	15.50	18.50	0.00	0.00
+23	31.31	19.19	13.13	36.36	1.01	0.00
+24	37.00	12.00	22.00	29.00	0.00	0.00
+25	35.50	22.50	17.50	24.50	0.00	0.00
+26	33.50	18.50	15.50	32.50	0.00	0.00
+27	34.50	14.50	25.50	25.50	0.00	0.00
+28	31.00	14.00	24.00	31.00	0.00	0.00
+29	30.00	27.00	24.00	19.00	0.00	0.00
+30	31.00	20.00	14.00	35.00	0.00	0.00
+31	33.50	29.50	13.50	23.50	0.00	0.00
+32	42.50	20.50	19.50	17.50	0.00	0.00
+33	25.50	23.50	14.50	36.50	0.00	0.00
+34	39.50	16.50	20.50	23.50	0.00	0.00
+35	32.50	23.50	21.50	22.50	0.00	0.00
+36	42.00	25.00	16.00	17.00	0.00	0.00
+37	38.00	17.00	19.00	26.00	0.00	0.00
+38	24.00	26.00	25.00	25.00	0.00	0.00
+39	22.50	41.50	18.50	17.50	0.00	0.00
+40	32.00	16.00	21.00	31.00	0.00	0.00
+41	33.00	28.00	19.00	20.00	0.00	0.00
+42	30.50	25.50	19.50	24.50	0.00	0.00
+43	35.00	29.00	15.00	21.00	0.00	0.00
+44	20.00	27.00	22.00	31.00	0.00	0.00
+45	40.50	21.50	21.50	16.50	0.00	0.00
+46	26.50	20.50	22.50	30.50	0.00	0.00
+47	38.50	29.50	16.50	15.50	0.00	0.00
+48	27.50	24.50	17.50	30.50	0.00	0.00
+49	28.50	32.50	10.50	28.50	0.00	0.00
+50	46.50	20.50	9.50	23.50	0.00	0.00
+51	34.50	28.50	13.50	23.50	0.00	0.00
+52	41.50	23.50	20.50	14.50	0.00	0.00
+53	20.00	28.00	26.00	26.00	0.00	0.00
+54	31.50	18.50	24.50	25.50	0.00	0.00
+55	30.50	22.50	16.50	30.50	0.00	0.00
+56	33.50	22.50	13.50	30.50	0.00	0.00
+57	23.00	24.00	23.00	30.00	0.00	0.00
+58	25.00	37.00	19.00	19.00	0.00	0.00
+59	34.00	23.00	24.00	19.00	0.00	0.00
+60	29.00	28.00	17.00	26.00	0.00	0.00
+61	25.50	23.50	24.50	26.50	0.00	0.00
+62	31.50	22.50	16.50	29.50	0.00	0.00
+63	27.50	28.50	25.50	18.50	0.00	0.00
+64	33.50	21.50	25.50	19.50	0.00	0.00
+65	35.50	19.50	18.50	26.50	0.00	0.00
+66	34.00	25.00	15.00	26.00	0.00	0.00
+67	37.00	23.00	19.00	21.00	0.00	0.00
+68	36.50	29.50	13.50	20.50	0.00	0.00
+69	38.50	19.50	20.50	21.50	0.00	0.00
+70	38.50	16.50	18.50	26.50	0.00	0.00
+71	25.50	38.50	21.50	14.50	0.00	0.00
+72	29.00	29.00	25.00	17.00	0.00	0.00
+73	32.50	20.50	21.50	25.50	0.00	0.00
+74	28.50	32.50	12.50	26.50	0.00	0.00
+75	41.50	12.50	18.50	27.50	0.00	0.00
+76	24.50	29.50	23.50	22.50	0.00	0.00
+77	36.00	21.00	18.00	25.00	0.00	0.00
+78	27.00	34.00	22.00	17.00	0.00	0.00
+79	21.50	26.50	25.50	26.50	0.00	0.00
+80	34.00	19.00	28.00	19.00	0.00	0.00
+81	17.00	26.00	26.00	31.00	0.00	0.00
+82	31.00	30.00	23.00	16.00	0.00	0.00
+83	31.50	26.50	12.50	29.50	0.00	0.00
+84	19.00	41.00	21.00	19.00	0.00	0.00
+85	37.50	24.50	16.50	21.50	0.00	0.00
+86	15.00	48.00	15.00	22.00	0.00	0.00
+87	41.00	16.00	18.00	25.00	0.00	0.00
+88	23.50	27.50	27.50	21.50	0.00	0.00
+89	26.50	27.50	26.50	19.50	0.00	0.00
+90	18.50	23.50	24.50	33.50	0.00	0.00
+91	27.00	32.00	22.00	19.00	0.00	0.00
+92	23.50	17.50	27.50	31.50	0.00	0.00
+93	25.50	37.50	15.50	21.50	0.00	0.00
+94	27.00	17.00	24.00	32.00	0.00	0.00
+95	26.77	37.88	14.65	20.71	1.01	0.00
+96	29.50	25.50	16.50	28.50	0.00	0.00
+97	29.00	31.00	21.00	19.00	0.00	0.00
+98	18.18	33.33	22.22	26.26	1.01	0.00
+99	24.50	33.50	24.50	17.50	0.00	0.00
+100	24.50	16.50	24.50	34.50	0.00	0.00
+101	25.00	40.00	19.00	16.00	0.00	0.00
+102	17.50	17.50	32.50	32.50	0.00	0.00
+103	31.00	26.00	16.00	27.00	0.00	0.00
+104	26.50	29.50	20.50	23.50	0.00	0.00
+105	34.00	33.00	21.00	12.00	0.00	0.00
+106	23.00	31.00	26.00	20.00	0.00	0.00
+107	17.68	35.86	23.74	22.73	1.01	0.00
+108	24.75	30.81	23.74	20.71	1.01	0.00
+109	17.00	31.00	22.00	30.00	0.00	0.00
+110	16.16	35.35	24.24	24.24	1.01	0.00
+111	24.24	32.32	23.23	20.20	1.01	0.00
+112	37.37	28.28	16.16	18.18	1.01	0.00
+113	19.70	22.73	32.83	24.75	1.01	0.00
+114	17.00	31.00	35.00	17.00	0.00	0.00
+115	29.50	24.50	23.50	22.50	0.00	0.00
+116	22.00	30.00	34.00	14.00	0.00	0.00
+117	27.00	23.00	19.00	31.00	0.00	0.00
+118	25.50	14.50	34.50	25.50	0.00	0.00
+119	22.50	34.50	20.50	22.50	0.00	0.00
+120	17.50	24.50	26.50	31.50	0.00	0.00
+121	27.78	33.84	22.73	15.66	1.01	0.00
+122	17.00	23.00	25.00	35.00	0.00	0.00
+123	23.50	46.50	11.50	18.50	0.00	0.00
+124	9.00	32.00	34.00	25.00	0.00	0.00
+125	24.00	27.00	19.00	30.00	0.00	0.00
+126	26.00	17.00	28.00	29.00	0.00	0.00
+127	26.50	16.50	21.50	35.50	0.00	0.00
+128	18.00	34.00	31.00	17.00	0.00	0.00
+129	25.50	25.50	27.50	21.50	0.00	0.00
+130	25.00	20.00	22.00	33.00	0.00	0.00
+131	17.50	39.50	24.50	18.50	0.00	0.00
+132	21.00	28.00	23.00	28.00	0.00	0.00
+133	13.50	31.50	35.50	19.50	0.00	0.00
+134	24.50	19.50	30.50	25.50	0.00	0.00
+135	16.50	23.50	30.50	29.50	0.00	0.00
+136	28.00	32.00	15.00	25.00	0.00	0.00
+137	22.50	21.50	30.50	25.50	0.00	0.00
+138	14.50	34.50	24.50	26.50	0.00	0.00
+139	20.50	29.50	24.50	25.50	0.00	0.00
+140	17.00	23.00	30.00	30.00	0.00	0.00
+141	20.50	23.50	25.50	30.50	0.00	0.00
+142	18.00	29.00	38.00	15.00	0.00	0.00
+143	22.00	24.00	27.00	27.00	0.00	0.00
+144	21.50	30.50	26.50	21.50	0.00	0.00
+145	22.00	21.00	29.00	28.00	0.00	0.00
+146	25.00	16.00	39.00	20.00	0.00	0.00
+147	26.50	22.50	30.50	20.50	0.00	0.00
+148	12.50	28.50	36.50	22.50	0.00	0.00
+149	26.50	23.50	23.50	26.50	0.00	0.00
+150	14.00	29.00	24.00	33.00	0.00	0.00
+151	19.50	30.50	32.50	17.50	0.00	0.00
+152	18.50	17.50	29.50	34.50	0.00	0.00
+153	22.50	22.50	31.50	23.50	0.00	0.00
+154	22.00	21.00	29.00	28.00	0.00	0.00
+155	21.00	26.00	19.00	34.00	0.00	0.00
+156	14.50	23.50	35.50	26.50	0.00	0.00
+157	22.00	31.00	23.00	24.00	0.00	0.00
+158	22.50	29.50	24.50	23.50	0.00	0.00
+159	17.50	12.50	46.50	23.50	0.00	0.00
+160	24.50	26.50	26.50	22.50	0.00	0.00
+161	13.00	23.00	45.00	19.00	0.00	0.00
+162	31.50	16.50	22.50	29.50	0.00	0.00
+163	19.50	21.50	35.50	23.50	0.00	0.00
+164	29.00	18.00	21.00	32.00	0.00	0.00
+165	14.50	17.50	35.50	32.50	0.00	0.00
+166	17.50	37.50	28.50	16.50	0.00	0.00
+167	16.50	21.50	31.50	30.50	0.00	0.00
+168	14.00	25.00	30.00	31.00	0.00	0.00
+169	18.50	20.50	23.50	37.50	0.00	0.00
+170	19.00	23.00	28.00	30.00	0.00	0.00
+171	20.00	28.00	33.00	19.00	0.00	0.00
+172	19.00	20.00	32.00	29.00	0.00	0.00
+173	24.50	16.50	33.50	25.50	0.00	0.00
+174	17.50	23.50	33.50	25.50	0.00	0.00
+175	33.50	17.50	35.50	13.50	0.00	0.00
+176	16.50	32.50	28.50	22.50	0.00	0.00
+177	19.00	22.00	27.00	32.00	0.00	0.00
+178	16.00	26.00	30.00	28.00	0.00	0.00
+179	18.00	18.00	22.00	42.00	0.00	0.00
+180	21.00	22.00	34.00	23.00	0.00	0.00
+181	20.50	19.50	35.50	24.50	0.00	0.00
+182	32.50	18.50	22.50	26.50	0.00	0.00
+183	24.50	13.50	28.50	33.50	0.00	0.00
+184	15.00	29.00	30.00	26.00	0.00	0.00
+185	15.00	32.00	33.00	20.00	0.00	0.00
+186	22.50	23.50	34.50	19.50	0.00	0.00
+187	19.00	14.00	40.00	27.00	0.00	0.00
+188	27.50	21.50	27.50	23.50	0.00	0.00
+189	17.00	22.00	34.00	27.00	0.00	0.00
+190	23.00	30.00	23.00	24.00	0.00	0.00
+191	25.00	22.00	28.00	25.00	0.00	0.00
+192	34.50	24.50	13.50	27.50	0.00	0.00
+193	18.50	25.50	25.50	30.50	0.00	0.00
+194	18.50	33.50	24.50	23.50	0.00	0.00
+195	16.00	26.00	23.00	35.00	0.00	0.00
+196	21.50	25.50	24.50	28.50	0.00	0.00
+197	20.00	21.00	23.00	36.00	0.00	0.00
+198	17.00	21.00	37.00	25.00	0.00	0.00
+199	20.50	18.50	25.50	35.50	0.00	0.00
+200	21.00	29.00	21.00	29.00	0.00	0.00
+201	27.00	21.00	23.00	29.00	0.00	0.00
+202	21.50	24.50	19.50	34.50	0.00	0.00
+203	21.50	24.50	26.50	27.50	0.00	0.00
+204	27.00	29.00	24.00	20.00	0.00	0.00
+205	19.50	21.50	22.50	36.50	0.00	0.00
+206	26.50	24.50	21.50	27.50	0.00	0.00
+207	22.50	21.50	19.50	36.50	0.00	0.00
+208	14.00	35.00	29.00	22.00	0.00	0.00
+209	16.00	23.00	12.00	49.00	0.00	0.00
+210	18.50	19.50	40.50	21.50	0.00	0.00
+211	26.00	20.00	22.00	32.00	0.00	0.00
+212	21.00	31.00	18.00	30.00	0.00	0.00
+213	24.00	15.00	31.00	30.00	0.00	0.00
+214	17.50	24.50	25.50	32.50	0.00	0.00
+215	26.00	24.00	23.00	27.00	0.00	0.00
+216	21.50	17.50	25.50	35.50	0.00	0.00
+217	26.00	29.00	17.00	28.00	0.00	0.00
+218	20.00	27.00	21.00	32.00	0.00	0.00
+219	17.00	21.00	21.00	41.00	0.00	0.00
+220	25.50	23.50	23.50	27.50	0.00	0.00
+221	21.50	23.50	20.50	34.50	0.00	0.00
+222	21.50	21.50	18.50	38.50	0.00	0.00
+223	20.00	27.00	28.00	25.00	0.00	0.00
+224	22.50	22.50	24.50	30.50	0.00	0.00
+225	14.50	35.50	30.50	19.50	0.00	0.00
+226	20.00	23.00	26.00	31.00	0.00	0.00
+227	20.50	24.50	23.50	31.50	0.00	0.00
+228	33.00	19.00	26.00	22.00	0.00	0.00
+229	22.50	24.50	18.50	34.50	0.00	0.00
+230	21.00	32.00	16.00	31.00	0.00	0.00
+231	23.00	28.00	30.00	19.00	0.00	0.00
+232	23.50	21.50	12.50	42.50	0.00	0.00
+233	21.00	27.00	25.00	27.00	0.00	0.00
+234	16.50	27.50	22.50	33.50	0.00	0.00
+235	20.00	15.00	28.00	37.00	0.00	0.00
+236	28.00	23.00	21.00	28.00	0.00	0.00
+237	20.50	19.50	22.50	37.50	0.00	0.00
+238	21.50	29.50	24.50	24.50	0.00	0.00
+239	20.00	8.00	17.00	55.00	0.00	0.00
+240	28.00	24.00	16.00	32.00	0.00	0.00
+241	22.50	22.50	16.50	38.50	0.00	0.00
+242	29.00	25.00	13.00	33.00	0.00	0.00
+243	22.50	15.50	23.50	38.50	0.00	0.00
+244	20.50	23.50	16.50	39.50	0.00	0.00
+245	28.00	23.00	19.00	30.00	0.00	0.00
+246	21.00	29.00	25.00	25.00	0.00	0.00
+247	32.00	14.00	13.00	41.00	0.00	0.00
+248	18.00	18.00	25.00	39.00	0.00	0.00
+249	25.00	23.00	21.00	31.00	0.00	0.00
+250	27.50	22.50	17.50	32.50	0.00	0.00
+251	13.50	20.50	36.50	29.50	0.00	0.00
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/samtools_stats_out2__mpc.tab	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,253 @@
+# Columns correspond to qualities, rows to cycles. First column is the cycle number, second is the number of N's and the rest is the number of mismatches
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/samtools_stats_out2__sn.tab	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,33 @@
+# Summary Numbers
+
+raw total sequences:	200
+filtered sequences:	0
+sequences:	200
+is sorted:	1
+1st fragments:	100
+last fragments:	100
+reads mapped:	25
+reads mapped and paired:	0	# paired-end technology bit set + both mates mapped
+reads unmapped:	175
+reads properly paired:	0	# proper-pair bit set
+reads paired:	200	# paired-end technology bit set
+reads duplicated:	0	# PCR or optical duplicate bit set
+reads MQ0:	6	# mapped and MQ=0
+reads QC failed:	0
+non-primary alignments:	0
+total length:	50200	# ignores clipping
+bases mapped:	6275	# ignores clipping
+bases mapped (cigar):	6275	# more accurate
+bases trimmed:	0
+bases duplicated:	0
+mismatches:	591	# from NM fields
+error rate:	9.418327e-02	# mismatches / bases mapped (cigar)
+average length:	251
+maximum length:	251
+average quality:	34.7
+insert size average:	0.0
+insert size standard deviation:	0.0
+inward oriented pairs:	0
+outward oriented pairs:	0
+pairs with other orientation:	0
+pairs on different chromosomes:	0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/samtools_stats_ref.fa	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,239 @@
+>chrM
+GATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGG
+GTATGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTC
+CTGCCTCATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTAAAGTGTGTTA
+ATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCTGCACAGCCACTTTCCACACAGACATC
+ATAACAAAAAATTTCCACCAAACCCCCCCTCCCCCGCTTCTGGCCACAGCACTTAAACACATCTCTGCCA
+AACCCCAAAAACAAAGAACCCTAACACCAGCCTAACCAGATTTCAAATTTTATCTTTTGGCGGTATGCAC
+TTTTAACAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATCTCATCAATA
+CAACCCCCGCCCATCCTACCCAGCACACACACACCGCTGCTAACCCCATACCCCGAACCAACCAAACCCC
+AAAGACACCCCCCACAGTTTATGTAGCTTACCTCCTCAAAGCAATACACTGAAAATGTTTAGACGGGCTC
+ACATCACCCCATAAACAAATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAA
+GCATCCCCGTTCCAGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGAACAAGCATCAAGCACGCAGC
+AATGCAGCTCAAAACGCTTAGCCTAGCCACACCCCCACGGGAAACAGCAGTGATTAACCTTTAGCAATAA
+ACGAAAGTTTAACTAAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGA
+TTAACCCAAGTCAATAGAAGCCGGCGTAAAGAGTGTTTTAGATCACCCCCTCCCCAATAAAGCTAAAACT
+CACCTGAGTTGTAAAAAACTCCAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACAC
+ACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAATC
+AACAAAACTGCTCGCCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCATATC
+CCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTGCTCAGCCTATATA
+CCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAGCGCAAGTACCCACGTAAAGACGTTAGGTC
+AAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCTACCCCAGAAAACTACGATAGCCCTTAT
+GAAACTTAAGGGTCGAAGGTGGATTTAGCAGTAAACTAAGAGTAGAGTGCTTAGTTGAACAGGGCCCTGA
+AGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAAAGGACATTTAACTAAAACCCCTACGCA
+TTTATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGACGAACCAGAGTGTA
+GCTTAACACAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCGCTCTGAGCTAAACCTA
+GCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCG
+ATAGAAATTGAAACCTGGCGCAATAGATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATA
+ATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAGAGCC
+AAAGCTAAGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTCTATGTAGCA
+AAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCAAGAT
+AGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCTAAATCCCCTTGTAAATTTAACTGTTAGTC
+CAAAGAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTTAACACCCATAG
+TAGGCCTAAAAGCAGCCACCAATTAAGAAAGCGTTCAAGCTCAACACCCACTACCTAAAAAATCCCAAAC
+ATATAACTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATAGAAGAACTAATGTTAGTATAAG
+TAACATGAAAACATTCTCCTCCGCATAAGCCTGCGTCAGATTAAAACACTGAACTGACAATTAACAGCCC
+AATATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGA
+AAGGTTAAAAAAAGTAAAAGGAACTCGGCAAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGC
+ATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAA
+AGGTAGCATAATCACTTGTTCCTTAAATAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCT
+TACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATAACACAGCAAGACGAGAAGACCCTA
+TGGAGCTTTAATTTATTAATGCAAACAGTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATT
+AAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCACCAG
+TCAAAGCGAACTACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAGTTACCCTAGGGATAACA
+GCGCAATCCTATTCTAGAGTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCG
+ATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGG
+AGTAATCCAGGTCGGTTTCTATCTACNTTCAAATTCCTCCCTGTACGAAAGGACAAGAGAAATAAGGCCT
+ACTTCACAAAGCGCCTTCCCCCGTAAATGATATCATCTCAACTTAGTATTATACCCACACCCACCCAAGA
+ACAGGGTTTGTTAAGATGGCAGAGCCCGGTAATCGCATAAAACTTAAAACTTTACAGTCAGAGGTTCAAT
+TCCTCTTCTTAACAACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCA
+TTCCTAATGCTTACCGAACGAAAAATTCTAGGCTATATACAACTACGCAAAGGCCCCAACGTTGTAGGCC
+CCTACGGGCTACTACAACCCTTCGCTGACGCCATAAAACTCTTCACCAAAGAGCCCCTAAAACCCGCCAC
+ATCTACCATCACCCTCTACATCACCGCCCCGACCTTAGCTCTCACCATCGCTCTTCTACTATGAACCCCC
+CTCCCCATACCCAACCCCCTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAG
+CCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCGCACTGCGAGC
+AGTAGCCCAAACAATCTCATATGAAGTCACCCTAGCCATCATTCTACTATCAACATTACTAATAAGTGGC
+TCCTTTAACCTCTCCACCCTTATCACAACACAAGAACACCTCTGATTACTCCTGCCATCATGACCCTTGG
+CCATAATATGATTTATCTCCACACTAGCAGAGACCAACCGAACCCCCTTCGACCTTGCCGAAGGGGAGTC
+CGAACTAGTCTCAGGCTTCAACATCGAATACGCCGCAGGCCCCTTCGCCCTATTCTTCATAGCCGAATAC
+ACAAACATTATTATAATAAACACCCTCACCACTACAATCTTCCTAGGAACAACATATGACGCACTCTCCC
+CTGAACTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAAC
+AGCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTCACCCTA
+GCATTACTTATATGATATGTCTCCATACCCATTACAATCTCCAGCATTCCCCCTCAAACCTAAGAAATAT
+GTCTGATAAAAGAGTTACTTTGATAGAGTAAATAATAGGAGCTTAAACCCCCTTATTTCTAGGACTATGA
+GAATCGAACCCATCCCTGAGAATCCAAAATTCTCCGTGCCACCTATCACACCCCATCCTAAAGTAAGGTC
+AGCTAAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTATACCCTTCCCGTACTAATTAATCCCCT
+GGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTT
+TTTACCTGAGTAGGCCTAGAAATAAACATGCTAGCTTTTATTCCAGTTCTAACCAAAAAAATAAACCCTC
+GTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCAAGCAACCGCATCCATAATCCTTCTAATAGCTAT
+CCTCTTCAACAATATACTCTCCGGACAATGAACCATAACCAATACTACCAATCAATACTCATCATTAATA
+ATCATAATAGCTATAGCAATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCCAAG
+GCACCCCTCTGACATCCGGCCTGCTTCTTCTCACATGACAAAAACTAGCCCCCATCTCAATCATATACCA
+AATCTCTCCCTCACTAAACGTAAGCCTTCTCCTCACTCTCTCAATCTTATCCATCATAGCAGGCAGTTGA
+GGTGGATTAAACCAAACCCAGCTACGCAAAATCTTAGCATACTCCTCAATTACCCACATAGGATGAATAA
+TAGCAGTTCTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTATCCTAACTACTAC
+CGCATTCCTACTACTCAACTTAAACTCCAGCACCACGACCCTACTACTATCTCGCACCTGAAACAAGCTA
+ACATGACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAACCGGCTTTT
+TGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCAC
+CATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCATA
+TCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAACCCACCCCATTCCTCCCCACACTCATCG
+CCCTTACCACGCTACTCCTACCTATCTCCCCTTTTATACTAATAATCTTATAGAAATTTAGGTTAAATAC
+AGACCAAGAGCCTTCAAAGCCCTCAGTAAGTTGCAATACTTAATTTCTGTAACAGCTAAGGACTGCAAAA
+CCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAGCTAAGCCCTTACTAGACCAATGGGA
+CTTAAACCCACAAACACTTAGTTAACAGCTAAGCACCCTAATCAACTGGCTTCAATCTACTTCTCCCGCC
+GCCGGGAAAAAAGGCGGGAGAAGCCCCGGCAGGTTTGAAGCTGCTTCTTCGAATTTGCAATTCAATATGA
+AAATCACCTCGGAGCTGGTAAAAAGAGGCCTAACCCCTGTCTTTAGATTTACAGTCCAATGCTTCACTCA
+GCCATTTTACCTCACCCCCACTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGG
+AACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTATTCGAGCC
+GAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCCATGCAT
+TTGTAATAATCTTCTTCATAGTAATACCCATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAAT
+AATCGGTGCCCCCGATATGGCGTTTCCCCGCATAAACAACATAAGCTTCTGACTCTTACCTCCCTCTCTC
+CTACTCCTGCTCGCATCTGCTATAGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTAG
+CAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTGTCTC
+CTCTATCTTAGGGGCCATCAATTTCATCACAACAATTATCAATATAAAACCCCCTGCCATAACCCAATAC
+CAAACGCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAG
+CTGCTGGCATCACTATACTACTAACAGACCGCAACCTCAACACCACCTTCTTCGACCCCGCCGGAGGAGG
+AGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCTTATCCTACCA
+GGCTTCGGAATAATCTCCCATATTGTAACTTACTACTCCGGAAAAAAAGAACCATTTGGATACATAGGTA
+TGGTCTGAGCTATGATATCAATTGGCTTCCTAGGGTTTATCGTGTGAGCACACCATATATTTACAGTAGG
+AATAGACGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAA
+GTATTTAGCTGACTCGCCACACTCCACGGAAGCAATATGAAATGATCTGCTGCAGTGCTCTGAGCCCTAG
+GATTCATCTTTCTTTTCACCGTAGGTGGCCTGACTGGCATTGTATTAGCAAACTCATCACTAGACATCGT
+ACTACACGACACGTACTACGTTGTAGCCCACTTCCACTATGTCCTATCAATAGGAGCTGTATTTGCCATC
+ATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACCCTAGACCAAACCTACGCCAAAATCC
+ATTTCACTATCATATTCATCGGCGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAAT
+GCCCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTC
+ATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCC
+TAATAGTAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATGCCCCCCACCCTACCACACATTCGA
+AGAACCCGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGCTGGTTTCAAGCCAA
+CCCCATGGCCTCCATGACTTTTTCAAAAAGGTATTAGAAAAACCATTTCATAACTTTGTCAAAGTTAAAT
+TATAGGCTAAATCCTATATATCTTAATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCT
+ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTCCTTATCTGCTTCCTAGTCC
+TGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGA
+AACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCGCCCTCCCATCCCTACGCATCCTTTAC
+ATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACG
+AGTACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGA
+CCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGATTGAAGCCCCCATTCGTATAATAATTACA
+TCACAAGACGTCTTGCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTC
+TAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGC
+AAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTT
+ACCCTATAGCACCCCCTCTACCCCCTCTAGAGCCCACTGTAAAGCTAACTTAGCATTAACCTTTTAAGTT
+AAAGATTAAGAGAACCAACACCTCTTTACAGTGAAATGCCCCAACTAAATACTACCGTATGGCCCACCAT
+AATTACCCCCATACTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAAACACAAACTACCACCTA
+CCTCCCTCACCAAAGCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCT
+GTTCGCTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCT
+CTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATCACCACCCAACAATGACTAATCAAAC
+TAACCTCAAAACAAATGATAACCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTT
+AATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTA
+TCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCACAGTGATTATAGGCTTTCGCTCTAAGATTA
+AAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGA
+AACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCAC
+CTACTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTACACTTATCA
+TCTTCACAATTCTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCTTAATCCAAGCCTACGTTTTCAC
+ACTTCTAGTAAGCCTCTACCTGCACGACAACACATAATGACCCACCAATCACATGCCTATCATATAGTAA
+AACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCCTAGCCATGTGATT
+TCACTTCCACTCCATAACGCTCCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGG
+CGCGATGTAACACGAGAAAGCACATACCAAGGCCACCACACACCACCTGTCCAAAAAGGCCTTCGATACG
+GGATAATCCTATTTATTACCTCAGAAGTTTTTTTCTTCGCAGGATTTTTCTGAGCCTTTTACCACTCCAG
+CCTAGCCCCTACCCCCCAATTAGGAGGGCACTGGCCCCCAACAGGCATCACCCCGCTAAATCCCCTAGAA
+GTCCCACTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAA
+TAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACCCT
+CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTTTT
+GTAGCCACAGGCTTCCACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTGCTTCATCCGCC
+AACTAATATTTCACTTTACATCCAAACATCACTTTGGCTTCGAAGCCGCCGCCTGATACTGGCATTTTGT
+AGATGTGGTTTGACTATTTCTGTATGTCTCCATCTATTGATGAGGGTCTTACTCTTTTAGTATAAATAGT
+ACCGTTAACTTCCAATTAACTAGTTTTGACAACATTCAAAAAAGAGTAATAAACTTCGCCTTAATTTTAA
+TAATCAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAACGGCTACAT
+AGAAAAATCCACCCCTTACGAGTGCGGCTTCGACCCTATATCCCCCGCCCGCGTCCCTTTCTCCATAAAA
+TTCTTCTTAGTAGCTATTACCTTCTTATTATTTGATCTAGAAATTGCCCTCCTTTTACCCCTACCATGAG
+CCCTACAAACAACTAACCTGCCACTAATAGTTATGTCATCCCTCTTATTAATCATCATCCTAGCCCTAAG
+TCTGGCCTATGAGTGACTACAAAAAGGATTAGACTGAACCGAATTGGTATATAGTTTAAACAAAACGAAT
+GATTTCGACTCATTAAATTATGATAATCATATTTACCAAATGCCCCTCATTTACATAAATATTATACTAG
+CATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCTCATATCCTCCCTACTATGCCTAGA
+AGGAATAATACTATCGCTGTTCATTATAGCTACTCTCATAACCCTCAACACCCACTCCCTCTTAGCCAAT
+ATTGTGCCTATTGCCATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGCCCTACTAGTCTCAA
+TCTCCAACACATATGGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCA
+ACAATTATATTACTACCACTGACATGACTTTCCAAAAAACACATAATTTGAATCAACACAACCACCCACA
+GCCTAATTATTAGCATCATCCCTCTACTATTTTTTAACCAAATCAACAACAACCTATTTAGCTGTTCCCC
+AACCTTTTCCTCCGACCCCCTAACAACCCCCCTCCTAATACTAACTACCTGACTCCTACCCCTCACAATC
+ATGGCAAGCCAACGCCACTTATCCAGTGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCT
+CCCTACAAATCTCCTTAATTATAACATTCACAGCCACAGAACTAATCATATTTTATATCTTCTTCGAAAC
+CACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACA
+TACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACACCC
+TAGGCTCACTAAACATTCTACTACTCACTCTCACTGCCCAAGAACTATCAAACTCCTGAGCCAACAACTT
+AATATGACTAGCTTACACAATAGCTTTTATAGTAAAGATACCTCTTTACGGACTCCACTTATGACTCCCT
+AAAGCCCATGTCGAAGCCCCCATCGCTGGGTCAATAGTACTTGCCGCAGTACTCTTAAAACTAGGCGGCT
+ATGGTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTTGTACT
+ATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTGCA
+TACTCTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTCATCCAAACCCCCTGAAGCTTCACCG
+GCGCAGTCATTCTCATAATCGCCCACGGGCTTACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTA
+CGAACGCACTCACAGTCGCATCATAATCCTCTCTCAAGGACTTCAAACTCTACTCCCACTAATAGCTTTT
+TGATGACTTCTAGCAAGCCTCGCTAACCTCGCCTTACCCCCCACTATTAACCTACTGGGAGAACTCTCTG
+TGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAGTCACAGC
+CCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAAA
+CCCTCATTCACACGAGAAAACACCCTCATGTTCATACACCTATCCCCCATTCTCCTCCTATCCCTCAACC
+CCGACATCATTACCGGGTTTTCCTCTTGTAAATATAGTTTAACCAAAACATCAGATTGTGAATCTGACAA
+CAGAGGCTTACGACCCCTTATTTACCGAGAAAGCTCACAAGAACTGCTAACTCATGCCCCCATGTCTAAC
+AACATGGCTTTCTCAACTTTTAAAGGATAACAGCTATCCATTGGTCTTAGGCCCCAAAAATTTTGGTGCA
+ACTCCAAATAAAAGTAATAACCATGCACACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCC
+ATCCTTACCACCCTCGTTAACCCTAACAAAAAAAACTCATACCCCCATTATGTAAAATCCATTGTCGCAT
+CCACCTTTATTATCAGTCTCTTCCCCACAACAATATTCATGTGCCTAGACCAAGAAGTTATTATCTCGAA
+CTGACACTGAGCCACAACCCAAACAACCCAGCTCTCCCTAAGCTTCAAACTAGACTACTTCTCCATAATA
+TTCATCCCTGTAGCATTGTTCGTTACATGGTCCATCATAGAATTCTCACTGTGATATATAAACTCAGACC
+CAAACATTAATCAGTTCTTCAAATATCTACTCATCTTCCTAATTACCATACTAATCTTAGTTACCGCTAA
+CAACCTATTCCAACTGTTCATCGGCTGAGAGGGCGTAGGAATTATATCCTTCTTGCTCATCAGTTGATGA
+TACGCCCGAGCAGATGCCAACACAGCAGCCATTCAAGCAATCCTATACAACCGTATCGGCGATATCGGTT
+TCATCCTCGCCTTAGCATGATTTATCCTACACTCCAACTCATGAGACCCACAACAAATAGCCCTTCTAAA
+CGCTAATCCAAGCCTCACCCCACTACTAGGCCTCCTCCTAGCAGCAGCAGGCAAATCAGCCCAATTAGGT
+CTCCACCCCTGACTCCCCTCAGCCATAGAAGGCCCCACCCCAGTCTCAGCCCTACTCCACTCAAGCACTA
+TAGTTGTAGCAGGAATCTTCTTACTCATCCGCTTCCACCCCCTAGCAGAAAATAGCCCACTAATCCAAAC
+TCTAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGCGCCCTTACACAAAATGACATC
+AAAAAAATCGTAGCCTTCTCCACTTCAAGTCAACTAGGACTCATAATAGTTACAATCGGCATCAACCAAC
+CACACCTAGCATTCCTGCACATCTGTACCCACGCCTTCTTCAAAGCCATACTATTTATGTGCTCCGGGTC
+CATCATCCACAACCTTAACAATGAACAAGATATTCGAAAAATAGGAGGACTACTCAAAACCATACCTCTC
+ACTTCAACCTCCCTCACCATTGGCAGCCTAGCATTAGCAGGAATACCTTTCCTCACAGGTTTCTACTCCA
+AAGACCACATCATCGAAACCGCAAACATATCATACACAAACGCCTGAGCCCTATCTATTACTCTCATCGC
+TACCTCCCTGACAAGCGCCTATAGCACTCGAATAATTCTTCTCACCCTAACAGGTCAACCTCGCTTCCCC
+ACCCTTACTAACATTAACGAAAATAACCCCACCCTACTAAACCCCATTAAACGCCTGGCAGCCGGAAGCC
+TATTCGCAGGATTTCTCATTACTAACAACATTTCCCCCGCATCCCCCTTCCAAACAACAATCCCCCTCTA
+CCTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTCTAACAGCCCTAGACCTCAACTACCTAACC
+AACAAACTTAAAATAAAATCCCCACTATGCACATTTTATTTCTCCAACATACTCGGATTCTACCCTAGCA
+TCACACACCGCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCT
+AACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACCTCCATCATCACCTCA
+ACCCAAAAAGGCATAATTAAACTTTACTTCCTCTCTTTCTTCTTCCCACTCATCCTAACCCTACTCCTAA
+TCACATAACCTATTCCCCCGAGCAATCTCAATTACAATATATACACCAACAAACAATGTTCAACCAGTAA
+CTACTACTAATCAACGCCCATAATCATACAAAGCCCCCGCACCAATAGGATCCTCCCGAATCAACCCTGA
+CCCCTCTCCTTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAACCACCACCCCATCATAC
+TCTTTCACCCACAGCACCAATCCTACCTCCATCGCTAACCCCACTAAAACACTCACCAAGACCTCAACCC
+CTGACCCCCATGCCTCAGGATACTCCTCAATAGCCATCGCTGTAGTATATCCAAAGACAACCATCATTCC
+CCCTAAATAAATTAAAAAAACTATTAAACCCATATAACCTCCCCCAAAATTCAGAATAATAACACACCCG
+ACCACACCGCTAACAATCAATACTAAACCCCCATAAATAGGAGAAGGCTTAGAAGAAAACCCCACAAACC
+CCATTACTAAACCCACACTCAACAGAAACAAAGCATACATCATTATTCTCGCACGGACTACAACCACGAC
+CAATGATATGAAAAACCATCGTTGTATTTCAACTACAAGAACACCAATGACCCCAATACGCAAAACTAAC
+CCCCTAATAAAATTAATTAACCACTCATTCATCGACCTCCCCACCCCATCCAACATCTCCGCATGATGAA
+ACTTCGGCTCACTCCTTGGCGCCTGCCTGATCCTCCAAATCACCACAGGACTATTCCTAGCCATGCACTA
+CTCACCAGACGCCTCAACCGCCTTTTCATCAATCGCCCACATCACTCGAGACGTAAATTATGGCTGAATC
+ATCCGCTACCTTCACGCCAATGGCGCCTCAATATTCTTTATCTGCCTCTTCCTACACATCGGGCGAGGCC
+TATATTACGGATCATTTCTCTACTCAGAAACCTGAAACATCGGCATTATCCTCCTGCTTGCAACTATAGC
+AACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGGGGCCACAGTAATTACAAAC
+TTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA
+GTCCCACCCTCACACGATTCTTTACCTTTCACTTCATCTTGCCCTTCATTATTGCAGCCCTAGCAACACT
+CCACCTCCTATTCTTGCACGAAACGGGATCAAACAACCCCCTAGGAATCACCTCCCATTCCGATAAAATC
+ACCTTCCACCCTTACTACACAATCAAAGACGCCCTCGGCTTACTTCTCTTCCTTCTCTCCTTAATGACAT
+TAACACTATTCTCACCAGACCTCCTAGGCGACCCAGACAATTATACCCTAGCCAACCCCTTAAACACCCC
+TCCCCACATCAAGCCCGAATGATATTTCCTATTCGCCTACACAATTCTCCGATCCGTCCCTAACAAACTA
+GGAGGCGTCCTTGCCCTATTACTATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATATCCAAAC
+AACAAAGCATAATATTTCGCCCACTAAGCCAATCACTTTATTGACTCCTAGCCGCAGACCTCCTCATTCT
+AACCTGAATCGGAGGACAACCAGTAAGCTACCCTTTTACCATCATTGGACAAGTAGCATCCGTACTATAC
+TTCACAACAATCCTAATCCTAATACCAACTATCTCCCTAATTGAAAACAAAATACTCAAATGGGCCTGTC
+CTTGTAGTATAAACTAATACACCAGTCTTGTAAACCGGAGATGAAAACCTTTTTCCAAGGACAAATCAGA
+GAAAAAGTCTTTAACTCCACCATTAGCACCCAAAGCTAAGATTCTAATTTAAACTATTCTCTGTTCTTTC
+ATGGGGAAGCAGATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACA
+TTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCA
+ATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCA
+ACTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTACCCACCCTTAACAGTACATAG
+TACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCC
+TCAGATAGGGGTCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCG
+CTCCGGGCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGTC
+ATAAAGCCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATG
+
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/samtools_stats_ref.fa.fai	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,1 @@
+chrM	16569	6	70	71
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/test-data/test.fa	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,3 @@
+>alpha
+tggggtgtcatagtaatccggttgggagtccgaggctaagaatattcatttagaggtcgg
+catattatccagaactttgcagccatatctccaagacatg
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/tool-data/fasta_indexes.loc.sample	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,29 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of Samtools indexed sequences data files.  You will need
+#to create these data files and then create a fasta_indexes.loc file
+#similar to this one (store it in this directory) that points to
+#the directories in which those files are stored. The fasta_indexes.loc
+#file has this format (white space characters are TAB characters):
+#
+# <unique_build_id>	<dbkey>	<display_name>	<file_base_path>
+#
+#So, for example, if you had hg19 Canonical indexed stored in
+#
+# /depot/data2/galaxy/hg19/sam/,
+#
+#then the fasta_indexes.loc entry would look like this:
+#
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
+#
+#and your /depot/data2/galaxy/hg19/sam/ directory
+#would contain hg19canon.fa and hg19canon.fa.fai files.
+#
+#Your fasta_indexes.loc file should include an entry per line for
+#each index set you have stored.  The file in the path does actually
+#exist, but it should never be directly used. Instead, the name serves
+#as a prefix for the index file.  For example:
+#
+#hg18canon	hg18	Human (Homo sapiens): hg18 Canonical	/depot/data2/galaxy/hg18/sam/hg18canon.fa
+#hg18full	hg18	Human (Homo sapiens): hg18 Full	/depot/data2/galaxy/hg18/sam/hg18full.fa
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
+#hg19full	hg19	Human (Homo sapiens): hg19 Full	/depot/data2/galaxy/hg19/sam/hg19full.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_stats/tool_data_table_conf.xml.sample	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,7 @@
+<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
+<tables>
+    <table name="fasta_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/fasta_indexes.loc" />
+    </table>
+</tables>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/macros.xml	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,172 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.9</token>
+    <token name="@FLAGS@">#set $flags = sum(map(int, str($filter).split(',')))</token>
+    <token name="@PREPARE_IDX@"><![CDATA[
+        ##prepare input and indices 
+        ln -s '$input' infile &&
+        #if $input.is_of_type('bam'):
+            #if str( $input.metadata.bam_index ) != "None":
+                ln -s '${input.metadata.bam_index}' infile.bai &&
+            #else:
+                samtools index infile infile.bai &&
+            #end if
+        #elif $input.is_of_type('cram'):
+            #if str( $input.metadata.cram_index ) != "None":
+                ln -s '${input.metadata.cram_index}' infile.crai &&
+            #else:
+                samtools index infile infile.crai &&
+            #end if
+        #end if
+    ]]></token>
+    <token name="@PREPARE_IDX_MULTIPLE@"><![CDATA[
+        ##prepare input and indices 
+        #for $i, $bam in enumerate( $input_bams ):
+            ln -s '$bam' '${i}' &&
+            #if $bam.is_of_type('bam'):
+                #if str( $bam.metadata.bam_index ) != "None":
+                    ln -s '${bam.metadata.bam_index}' '${i}.bai' &&
+                #else:
+                    samtools index '${i}' '${i}.bai' &&
+                #end if
+            #elif $bam.is_of_type('cram'):
+                #if str( $bam.metadata.cram_index ) != "None":
+                    ln -s '${bam.metadata.cram_index}' '${i}.crai' &&
+                #else:
+                    samtools index '${i}' '${i}.crai' &&
+                #end if
+            #end if
+        #end for
+    ]]></token>
+    <token name="@PREPARE_FASTA_IDX@"><![CDATA[
+        ##checks for reference data ($addref_cond.addref_select=="history" or =="cached")
+        ##and sets the -t/-T parameters accordingly:
+        ##- in case of history a symbolic link is used because samtools (view) will generate
+        ##  the index which might not be possible in the directory containing the fasta file
+        ##- in case of cached the absolute path is used which allows to read the cram file
+        ##  without specifying the reference
+        #if $addref_cond.addref_select == "history":
+            ln -s '${addref_cond.ref}' reference.fa &&
+            samtools faidx reference.fa &&
+            #set reffa="reference.fa"
+            #set reffai="reference.fa.fai"
+        #elif $addref_cond.addref_select == "cached":
+            #set reffa=str($addref_cond.ref.fields.path)
+            #set reffai=str($addref_cond.ref.fields.path)+".fai"
+        #else
+            #set reffa=None
+            #set reffai=None
+        #end if
+    ]]></token>
+    <token name="@ADDTHREADS@"><![CDATA[
+        ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+        addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+    ]]></token>
+    <token name="@ADDMEMORY@"><![CDATA[
+        ##compute the number of memory available to samtools sort (-m)
+        ##use only 75% of available: https://github.com/samtools/samtools/issues/831
+        addmemory=\${GALAXY_MEMORY_MB_PER_SLOT:-768} && 
+        ((addmemory=addmemory*75/100)) &&
+    ]]></token>
+    <xml name="seed_input">
+       <param name="seed" type="integer" optional="True" label="Seed for random number generator" help="If empty a random seed is used." /> 
+    </xml>
+    <xml name="flag_options">
+        <option value="1">read is paired</option>
+        <option value="2">read is mapped in a proper pair</option>
+        <option value="4">read is unmapped</option>
+        <option value="8">mate is unmapped</option>
+        <option value="16">read reverse strand</option>
+        <option value="32">mate reverse strand</option>
+        <option value="64">read is the first in a pair</option>
+        <option value="128">read is the second in a pair</option>
+        <option value="256">alignment or read is not primary</option>
+        <option value="512">read fails platform/vendor quality checks</option>
+        <option value="1024">read is a PCR or optical duplicate</option>
+        <option value="2048">supplementary alignment</option>
+    </xml>
+
+    <!-- region specification macros and tokens for tools that allow the specification 
+         of region by bed file / space separated list of regions -->
+    <token name="@REGIONS_FILE@"><![CDATA[
+        #if $cond_region.select_region == 'tab':
+            -t '$cond_region.targetregions'
+        #end if
+    ]]></token>
+    <token name="@REGIONS_MANUAL@"><![CDATA[
+        #if $cond_region.select_region == 'text':
+            #for $i, $x in enumerate($cond_region.regions_repeat):
+               '${x.region}'
+            #end for
+        #end if
+    ]]></token>
+    <xml name="regions_macro">
+        <conditional name="cond_region">
+            <param name="select_region" type="select" label="Filter by regions" help="restricts output to only those alignments which overlap the specified region(s)">
+                <option value="no" selected="True">No</option>
+                <option value="text">Manualy specify regions</option>
+                <option value="tab">Regions from tabular file</option>
+            </param>
+            <when value="no"/>
+            <when value="text">
+                <repeat name="regions_repeat" min="1" default="1" title="Regions">
+                    <param name="region" type="text" label="region" help="format chr:from-to">
+                        <validator type="regex" message="Required format: CHR[:FROM[-TO]]; where CHR: string containing any character except quotes, whitespace and colon; FROM and TO: any integer">^[^\s'\":]+(:\d+(-\d+){0,1}){0,1}$</validator>
+                    </param>
+                </repeat>
+            </when>
+            <when value="tab">
+                <param name="targetregions" argument="-t/--target-regions" type="data" format="tabular" label="Target regions file" help="Do stats in these regions only. Tab-delimited file chr,from,to (1-based, inclusive)" />
+            </when>
+        </conditional>
+    </xml>
+
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+                @misc{SAM_def,
+                title={Definition of SAM/BAM format},
+                url = {https://samtools.github.io/hts-specs/},}
+            </citation>
+            <citation type="doi">10.1093/bioinformatics/btp352</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
+            <citation type="doi">10.1093/bioinformatics/btr509</citation>
+            <citation type="bibtex">
+                @misc{Danecek_et_al,
+                Author={Danecek, P., Schiffels, S., Durbin, R.},
+                title={Multiallelic calling model in bcftools (-m)},
+                url = {http://samtools.github.io/bcftools/call-m.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Durbin_VCQC,
+                Author={Durbin, R.},
+                title={Segregation based metric for variant call QC},
+                url = {http://samtools.github.io/bcftools/rd-SegBias.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{Li_SamMath,
+                Author={Li, H.},
+                title={Mathematical Notes on SAMtools Algorithms},
+                url = {http://www.broadinstitute.org/gatk/media/docs/Samtools.pdf},}
+            </citation>
+            <citation type="bibtex">
+                @misc{SamTools_github,
+                title={SAMTools GitHub page},
+                url = {https://github.com/samtools/samtools},}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="version_command">
+        <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" level="fatal" description="Error" />
+        </stdio>
+    </xml>
+</macros>
Binary file samtools_view/test-data/1.bam has changed
Binary file samtools_view/test-data/1_sort.bam has changed
Binary file samtools_view/test-data/1_sort_read_names.bam has changed
Binary file samtools_view/test-data/bam_to_sam_in1.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/bam_to_sam_in1.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,14 @@
+@HD	VN:1.0	SO:coordinate
+@SQ	SN:chr1	LN:101
+@SQ	SN:chr7	LN:404
+@SQ	SN:chr8	LN:202
+@RG	ID:0	SM:Hi,Mom!
+@PG	ID:1	PN:Hey!	VN:2.0
+both_reads_align_clip_marked	83	chr7	1	255	101M	=	302	201	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_present_only_first_aligns	89	chr7	1	255	101M	*	0	0	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+read_2_too_many_gaps	83	chr7	1	255	101M	=	302	201	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_adapter	147	chr7	16	255	101M	=	21	-96	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_adapter	99	chr7	21	255	101M	=	16	96	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_marked	163	chr7	302	255	101M	=	1	-201	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
+read_2_too_many_gaps	163	chr7	302	255	10M1D10M5I76M	=	1	-201	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
+both_reads_present_only_first_aligns	165	*	0	0	*	chr7	1	0	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
Binary file samtools_view/test-data/bam_to_sam_in2.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/bam_to_sam_in2.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,25 @@
+@HD	VN:1.0	SO:coordinate
+@SQ	SN:chr1	LN:10001
+@SQ	SN:chr2	LN:100001
+@SQ	SN:chr3	LN:10001
+@SQ	SN:chr4	LN:1001
+@RG	ID:rg1	SM:s1
+@RG	ID:rg2	SM:s3
+bar:record:4	77	chr1	1	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg1
+bar:record:6	77	chr1	1	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg2
+bar:record:1	77	chr1	10	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg1
+bar:record:3	77	chr1	10	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg2
+bar:record:1	141	chr1	20	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg1
+bar:record:7	77	chr1	20	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg2
+bar:record:8	77	chr1	30	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg2
+bar:record:4	141	chr1	40	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg1
+bar:record:5	77	chr1	40	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg2
+bar:record:6	141	chr1	50	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg2
+bar:record:2	77	chr2	10	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg1
+bar:record:2	141	chr2	30	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg2
+bar:record:3	141	chr3	20	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg1
+bar:record:8	141	chr3	20	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg1
+bar:record:5	141	chr3	40	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg1
+bar:record:9	77	chr4	10	0	*	*	0	0	AAAAAAAAAAAAA	1111111111111	RG:Z:rg1
+bar:record:7	141	chr4	20	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg1
+bar:record:9	141	chr4	60	0	*	*	0	0	CCCCCCCCCCCCC	2222222222222	RG:Z:rg1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/bam_to_sam_out1.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,14 @@
+@HD	VN:1.0	SO:coordinate
+@SQ	SN:chr1	LN:101
+@SQ	SN:chr7	LN:404
+@SQ	SN:chr8	LN:202
+@RG	ID:0	SM:Hi,Mom!
+@PG	ID:1	PN:Hey!	VN:2.0
+both_reads_align_clip_marked	83	chr7	1	255	101M	=	302	201	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_present_only_first_aligns	89	chr7	1	255	101M	*	0	0	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+read_2_too_many_gaps	83	chr7	1	255	101M	=	302	201	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_adapter	147	chr7	16	255	101M	=	21	-96	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_adapter	99	chr7	21	255	101M	=	16	96	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_marked	163	chr7	302	255	101M	=	1	-201	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
+read_2_too_many_gaps	163	chr7	302	255	10M1D10M5I76M	=	1	-201	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
+both_reads_present_only_first_aligns	165	*	0	0	*	chr7	1	0	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/bam_to_sam_out2.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,6 @@
+@HD	VN:1.0	SO:coordinate
+@SQ	SN:chr1	LN:101
+@SQ	SN:chr7	LN:404
+@SQ	SN:chr8	LN:202
+@RG	ID:0	SM:Hi,Mom!
+@PG	ID:1	PN:Hey!	VN:2.0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/bam_to_sam_out3.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,8 @@
+both_reads_align_clip_marked	83	chr7	1	255	101M	=	302	201	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_present_only_first_aligns	89	chr7	1	255	101M	*	0	0	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+read_2_too_many_gaps	83	chr7	1	255	101M	=	302	201	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_adapter	147	chr7	16	255	101M	=	21	-96	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_adapter	99	chr7	21	255	101M	=	16	96	CAACAGAAGCNGGNATCTGTGTTTGTGTTTCGGATTTCCTGCTGAANNGNTTNTCGNNTCNNNNNNNNATCCCGATTTCNTTCCGCAGCTNACCTCCCAAN	)'.*.+2,))&&'&*/)-&*-)&.-)&)&),/-&&..)./.,.).*&&,&.&&-)&&&0*&&&&&&&&/32/,01460&&/6/*0*/2/283//36868/&	RG:Z:0
+both_reads_align_clip_marked	163	chr7	302	255	101M	=	1	-201	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
+read_2_too_many_gaps	163	chr7	302	255	10M1D10M5I76M	=	1	-201	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
+both_reads_present_only_first_aligns	165	*	0	0	*	chr7	1	0	NCGCGGCATCNCGATTTCTTTCCGCAGCTAACCTCCCGACAGATCGGCAGCGCGTCGTGTAGGTTATTATGGTACATCTTGTCGTGCGGCNAGAGCATACA	&/15445666651/566666553+2/14/&/555512+3/)-'/-&-'*+))*''13+3)'//++''/'))/3+&*5++)&'2+&+/*&-&&*)&-./1'1	RG:Z:0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/chr_m.fasta	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,335 @@
+>chrM
+GTTAATGTAGCTTAATAATATAAAGCAAGGCACTGAAAATGCCTAGATGA
+GTATTCTTACTCCATAAACACATAGGCTTGGTCCTAGCCTTTTTATTAGT
+TATTAATAGAATTACACATGCAAGTATCCGCACCCCAGTGAGAATGCCCT
+CTAAATCACGTCTCTACGATTAAAAGGAGCAGGTATCAAGCACACTAGAA
+AGTAGCTCATAACACCTTGCTCAGCCACACCCCCACGGGACACAGCAGTG
+ATAAAAATTAAGCTATGAACGAAAGTTCGACTAAGTCATATTAAATAAGG
+GTTGGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAATTA
+ATAAATCTCCGGCGTAAAGCGTGTCAAAGACTAATACCAAAATAAAGTTA
+AAACCCAGTTAAGCCGTAAAAAGCTACAACCAAAGTAAAATAGACTACGA
+AAGTGACTTTAATACCTCTGACTACACGATAGCTAAGACCCAAACTGGGA
+TTAGATACCCCACTATGCTTAGCCCTAAACTAAAATAGCTTACCACAACA
+AAGCTATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTT
+GGCGGTGCTTTACATCCCTCTAGAGGAGCCTGTTCCATAATCGATAAACC
+CCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT
+CAGCAAACCCTAAACAAGGTACCGAAGTAAGCACAAATATCCAACATAAA
+AACGTTAGGTCAAGGTGTAGCCCATGGGATGGAGAGAAATGGGCTACATT
+TTCTACCCTAAGAACAAGAACTTTAACCCGGACGAAAGTCTCCATGAAAC
+TGGAGACTAAAGGAGGATTTAGCAGTAAATTAAGAATAGAGAGCTTAATT
+GAATCAGGCCATGAAGCGCGCACACACCGCCCGTCACCCTCCTTAAATAT
+CACAAATCATAACATAACATAAAACCGTGACCCAAACATATGAAAGGAGA
+CAAGTCGTAACAAGGTAAGTATACCGGAAGGTGTACTTGGATAACCAAAG
+TGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATTTCACTCAAAA
+TGAACACTTTGAACTAAAGCTAGCCCAAACAATACCTAATTCAATTACCC
+TTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAG
+AAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAACGATGAAAG
+ATGCATTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT
+AATGATTTAACTAGAATAAACTTAGCAAAGAGAACTTAAGCTAAGCACCC
+CGAAACCAGACGAGCTACCTATGAACAGTTACAAATGAACCAACTCATCT
+ATGTCGCAAAATAGTGAGAAGATTCGTAGGTAGAGGTGAAAAGCCCAACG
+AGCCTGGTGATAGCTGGTTGTCCAGAAACAGAATTTCAGTTCAAATTTAA
+ATTTACCTAAAAACTACTCAATTCTAATGTAAATTTAAATTATAGTCTAA
+AAAGGTACAGCTTTTTAGATACAGGTTACAACCTTCATTAGAGAGTAAGA
+ACAAGATAAACCCATAGTTGGCTTAAAAGCAGCCATCAATTAAGAAAGCG
+TTCAAGCTCAACGACACATCTATCTTAATCCCAACAATCAACCCAAACTA
+ACTCCTAATCTCATACTGGACTATTCTATCAACACATAGAAGCAATAATG
+TTAATATGAGTAACAAGAATTATTTCTCCTTGCATAAGCTTATATCAGAA
+CGAATACTCACTGATAGTTAACAACAAGATAGGGATAATCCAAAAACTAA
+TCATCTATTTAAACCATTGTTAACCCAACACAGGCATGCATCTATAAGGA
+AAGATTAAAAGAAGTAAAAGGAACTCGGCAAACACAAACCCCGCCTGTTT
+ACCAAAAACATCACCTCTAGCATTTCCAGTATTAGAGGCACTGCCTGCCC
+AGTGACATCTGTTtaaacggccgcggtatcctaaccgtgcaaaggtagca
+taatcacttgttccctaaatagggacttgtatgaatggccacacgagggt
+tttactgtctcttacttccaatcagtgaaattgaccttcccgtgaagagg
+cgggaatgactaaataagacgagaagaccctatggagcttTAATTAACTG
+ATTCACAAAAAACAACACACAAACCTTAACCTTCAGGGACAACAAAACTT
+TTGATTGAATCAGCAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAAC
+CTCCGAGTGATTTAAATCCAGACTAACCAGTCAAAATATATAATCACTTA
+TTGATCCAAACCATTGATCAACGGAACAAGTTACCCTAGGGATAACAGCG
+CAATCCTATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCGATG
+TTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTT
+CAACGATTAAAGTCTTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGT
+CGGTTTCTATCTATTCTATACTTTTCCCAGTACGAAAGGACAAGAAAAGT
+AGGGCCCACTTTACAAGAAGCGCCCTCAAACTAATAGATGACATAATCTA
+AATCTAACTAATTTATAACTTCTACCGCCCTAGAACAGGGCTCgttaggg
+tggcagagcccggaaattgcataaaacttaaacctttacactcagaggtt
+caactcctctccctaacaacaTGTTCATAATTAACGTCCTCCTCCTAATT
+GTCCCAATCTTGCTCGCCGTAGCATTCCTCACACTAGTTGAACGAAAAGT
+CTTAGGCTATATGCAACTTCGCAAAGGACCCAACATCGTAGGCCCCTATG
+GCCTACTACAACCTATTGCCGATGCCCTCAAACTATTTATCAAAGAGCCA
+CTACAACCACTAACATCATCGACATCCATATTCATCATCGCACCAATCCT
+AGCCCTAACCCTGGCCTTAACCATATGAATCCCTCTGCCCATACCATACC
+CACTAATCAACATAAACCTAGGAATTCTATTCATACTAGCCATGTCCAGC
+CTAGCTGTCTACTCAATCCTTTGATCAGGATGGGCCTCAAACTCAAAATA
+CGCCCTAATTGGAGCTCTACGAGCAGTAGCACAAACCATCTCATACGAAG
+TAACTCTAGCAATCATCCTACTCTCAGTCCTCCTAATAAGCGGATCATTC
+ACATTATCAACACTTATTATTACCCAAGAATACCTCTGATTAATCTTCCC
+ATCATGACCCTTAGCCATAATGTGATTCATCTCAACATTAGCCGAAACCA
+ACCGAGCTCCATTTGACCTAACAGAAGGAGAATCAGAACTCGTCTCTGGA
+TTCAACGTTGAATACGCAGCCGGCCCATTTGCTCTATTCTTCCTAGCAGA
+ATACGCAAACATCATCATGATAAACATCTTCACAACAACCCTATTTCTAG
+GAGCATTTCACAACCCCTACCTGCCAGAACTCTACTCAATTAATTTCACC
+ATTAAAGCTCTCCTTCTAACATGTTCCTTCCTATGAATCCGAGCATCCTA
+CCCACGATTCCGATATGACCAACTTATACACCTCCTATGAAAGAACTTCC
+TACCACTCACACTAGCCCTCTGCATATGACACGTCTCACTTCCAATCATA
+CTATCCAGCATCCCACCACAAACATAGGAAATATGTCTGACAAAAGAGTT
+ACTTTGATAGAGTAAAACATAGAGGCTCAAACCCTCTTATTTctagaact
+acaggaattgaacctgctcctgagaattcaaaatcctccgtgctaccgaa
+ttacaccatgtcctaCAAGTAAGGTCAGCTAAATAAGCTATCGGGCCCAT
+ACCCCGAAAATGTTGGATTACACCCTTCCCGTACTAATAAATCCCCTTAT
+CTTCACAACTATTCTAATAACAGTTCTTCTAGGAACTATAATCGTTATAA
+TAAGCTCACACTGACTAATAATCTGAATCGGATTTGAAATAAATCTACTA
+GCCATTATCCCTATCCTAATAAAAAAGTACAATCCCCGAACCATAGAAGC
+CTCCACCAAATATTTTCTAACCCAAGCCACCGCATCAATACTCCTCATAA
+TAGCGATCATCATTAACCTCATACACTCAGGCCAATGAACAATCACAAAA
+GTCTTCAACCCCACAGCGTCCATCATTATAACTTCAGCTCTCGCCATAAA
+ACTTGGACTCACACCATTCCACTTCTGAGTACCCGAAGTCACACAGGGCA
+TCTCATTAACATCAGGTCTCATCCTACTTACATGACAAAAACTAGCCCCA
+ATATCAATCCTATATCAAATCTCACCCTCAATTAACCTAAATATCTTATT
+AACTATAGCCGTACTGTCAATCCTAGTAGGAGGCTGAGGCGGTCTCAACC
+AAACCCAACTACGAAAAATCATAGCATACTCGTCAATCGCGCATATAGGA
+TGAATAACAGCTGTCCTAGTATATAACCCAACACTAACAATACTAAACAT
+ATTAATTTACATTATAATAACACTCACAATATTCATACTATTTATCCACA
+GCTCCTCTACTACAACACTATCACTCTCCCACACATGAAACAAAATACCT
+CTAACCACTACACTAATCTTAATTACCTTACTATCCATAGGAGGCCTCCC
+CCCACTATCAGGATTCATACCCAAATGAATAATCATTCAAGAGCTCACCA
+AAAATAGCAGCATCATCCTCCCCACACTAATAGCCATTATAGCACTACTC
+AACCTCTACTTCTACATACGACTAACCTATTCCACCTCACTGACCATATT
+CCCATCCACAAACAACATAAAAATAAAATGACAATTCGAAACCAAACGAA
+TTACTCTCTTACCCCCGTTAATTGTTATATCCTCCCTACTCCTCCCCCTA
+ACCCCCATACTATCAATTTTGGACTAGGAATTTAGGTTAACATCCCAGAC
+CAAGAGCCTTCAAAGCTCTAAGCAAGTGAATCCACTTAATTCCTGCATAC
+TAAGGACTGCGAGACTCTATCTCACATCAATTGAACGCAAATCAAACTCT
+TTTATTAAGCTAAGCCCTTACTAGATTGGTGGGCTACCATCCCACGAAAT
+TTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTTCTCC
+CGCCGCCTAGAAAAAAAGGCGGGAGAAGCCCCGGCAGAAATTGAAGCTGC
+TCCTTTGAATTTGCAATTCAATGTGAAAATTCACCACGGGACTTGATAAG
+AAGAGGATTCCAACCCCTGTCTTTAGATTTACAGTCTAATGCTTACTCAG
+CCATCTTACCTATGTTCATCAACCGCTGACTATTTTCAACTAACCACAAA
+GACATCGGCACTCTGTACCTCCTATTCGGCGCTTGAGCTGGAATAGTAGG
+AACTGCCCTAAGCCTCCTAATCCGTGCTGAATTAGGCCAACCTGGGACCC
+TACTAGGAGATGATCAGATCTACAATGTCATTGTAACCGCCCATGCATTC
+GTAATAATTTTCTTTATGGTCATACCCATTATAATCGGAGGATTCGGAAA
+CTGATTAGTCCCCCTGATAATTGGAGCACCTGATATAGCTTTCCCCCGAA
+TAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTTCTTCTC
+GCTTCCTCAATAATTGAAGCAGGTGCCGGAACAGGCTGAACCGTATATCC
+TCCTCTAGCTGGAAATCTGGCGCATGCAGGAGCCTCTGTTGACTTAACCA
+TTTTCTCTCTCCACCTAGCTGGGGTGTCCTCGATTTTAGGTGCCATCAAC
+TTTATTACCACAATCATTAACATAAAACCACCAGCCCTATCCCAATATCA
+AACCCCCCTATTCGTTTGATCTGTCCTTATTACGGCAGTACTCCTTCTCC
+TAGCCCTCCCGGTCCTAGCAGCAGGCATTACCATGCTTCTCACAGACCGT
+AACCTGAACACTACTTTCTTCGACCCCGCAGGAGGAGGGGATCCAATCCT
+TTATCAACACCTATTCTGATTCTTCGGACACCCCGAAGTCTATATTCTTA
+TCCTACCAGGCTTCGGTATAATCTCACACATCGTCACATACTACTCAGGT
+AAAAAGGAACCTTTTGGCTACATGGGTATAGTGTGAGCTATAATATCCAT
+TGGCTTTCTAGGCTTCATCGTATGGGCTCACCACATGTTTACAGTAGGGA
+TAGACGTTGACACACGAGCATACTTCACATCAGCTACCATAATCATCGCT
+ATCCCTACTGGTGTAAAAGTATTCAGCTGACTAGCCACCCTGCACGGAGG
+AAATATCAAATGATCTCCAGCTATACTCTGAGCTCTAGGCTTCATCTTCT
+TATTCACAGTAGGAGGTCTAACAGGAATCGTCCTAGCTAACTCATCCCTA
+GATATTGTTCTCCACGATACTTATTATGTAGTAGCACATTTCCATTATGT
+CCTGTCTATAGGAGCAGTCTTCGCCATTATGGGGGGATTTGTACACTGAT
+TCCCTCTATTCTCAGGATACACACTCAACCAAACCTGAGCAAAAATCCAC
+TTTACAATTATATTCGTAGGGGTAAATATAACCTTCTTCCCACAACATTT
+CCTTGGCCTCTCAGGAATGCCACGACGCTATTCTGATTATCCAGACGCAT
+ATACAACATGAAATACCATCTCATCCATAGGATCTTTTATCTCACTTACA
+GCAGTGATACTAATAATTTTCATAATTTGAGAAGCGTTCGCATCCAAACG
+AGAAGTGTCTACAGTAGAATTAACCTCAACTAATCTGGAATGACTACACG
+GATGCCCCCCACCATACCACACATTTGAAGAACCCACCTACGTAAACCTA
+AAAtaagaaaggaaggaatcgaaccccctctaactggtttcaagccaata
+tcataaccactatgtctttctcCATCAATTGAGGTATTAGTAAAAATTAC
+ATGACTTTGTCAAAGTTAAATTATAGGTTAAACCCCTATATACCTCTATG
+GCCTACCCCTTCCAACTAGGATTCCAAGACGCAACATCCCCTATTATAGA
+AGAACTCCTACACTTCCACGACCACACACTAATAATCGTATTCCTAATTA
+GCTCTCTAGTATTATATATTATCTCATCAATACTAACAACTAAATTAACC
+CATACCAGCACCATAGATGCTCAAGAAGTAGAGACAATTTGAACGATTTT
+ACCAGCCATCATCCTTATTCTAATCGCCCTCCCATCCCTACGAATTCTAT
+ATATAATAGATGAAATCAATAATCCGTCCCTCACAGTCAAAACAATAGGC
+CACCAATGATACTGAAGCTACGAGTATACCGATTACGAAGACTTGACCTT
+TGACTCCTACATGATCCCCACATCAGACCTAAAACCAGGAGAATTACGTC
+TTCTAGAAGTCGACAATCGAGTGGTTCTCCCCATAGAAATAACCATCCGA
+ATGCTAATTTCATCCGAAGACGTCCTACACTCATGAGCTGTGCCCTCCCT
+AGGCCTAAAAACAGACGCTATCCCTGGGCGCCTAAATCAGACAACTCTCG
+TGGCCTCTCGACCAGGACTTTACTACGGTCAATGCTCAGAGATCTGCGGA
+TCAAACCACAGCTTTATACCAATTGTCCTTGAACTAGTTCCACTGAAACA
+CTTCGAAGAATGATCTGCATCAATATTATAAAGTCACTAAGAAGCTATTA
+TAGCATTAACCTTTTAAGTTAAAGATTGAGGGTTCAACCCCCTCCCTAGT
+GATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTCAAT
+AATCCTAACTCTATTTATTGTATTTCAACTAAAAATCTCAAAGCACTCCT
+ATCCGACACACCCAGAAGTAAAGACAACCAAAATAACAAAACACTCTGCC
+CCTTGAGAATCAAAATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCA
+ACAATAGTAGGCCTCCCTATTGTAATTCTGATCATCATATTTCCCAGCAT
+CCTATTCCCCTCACCCAACCGACTAATCAACAATCGCCTAATCTCAATTC
+AACAATGGCTAGTCCAACTTACATCAAAACAAATAATAGCTATCCATAAC
+AGCAAAGGACAAACCTGAACTCTTATACTCATATCACTGATCCTATTCAT
+TGGCTCAACAAACTTATTAGGCCTACTACCTCACTCATTTACACCAACAA
+CACAACTATCAATAAACCTAGGCATAGCTATTCCCCTATGGGCAGGGACA
+GTATTCATAGGCTTTCGTCACAAAACAAAAGCAGCCCTAGCCCACTTTCT
+ACCTCAAGGGACGCCCATTTTCCTCATCCCCATACTAGTAATTATCGAGA
+CTATCAGCCTATTTATTCAACCTGTAGCCCTAGCCGTGCGGCTAACCGCT
+AACATTACCGCCGGACACCTCCTAATACACCTCATCGGAGGGGCAACACT
+AGCCCTCATAAGCATCAGCCCCTCAACAGCCCTTATTACGTTTATCATCC
+TAATTCTACTAACTATCCTCGAATTCGCAGTAGCTATAATCCAAGCCTAC
+GTATTCACTCTCCTGGTAAGCCTTTACTTACACGACAACACCTAATGACC
+CACCAAACCCACGCTTACCACATAGTAAACCCCAGCCCATGACCACTTAC
+AGGAGCCCTATCAGCCCTCCTGATAACATCAGGACTAGCCATGTGATTTC
+ACTTTAACTCAACCTTACTTCTAGCTATAGGGCTATTAACTAACATCCTT
+ACCATATATCAATGATGACGAGACATCATCCGAGAAAGCACATTCCAAGG
+CCATCACACATCAATCGTTCAAAAGGGACTCCGATATGGCATAATCCTTT
+TTATTATCTCAGAAGTCTTCTTCTTCTCTGGCTTCTTCTGAGCCTTTTAC
+CACTCAAGCCTAGCCCCCACACCCGAACTAGGCGGCTGCTGACCACCCAC
+AGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCTTACTCAACACCTCAG
+TGCTCCTAGCATCTGGAGTCTCTATCACCTGAGCCCACCATAGCCTAATA
+GAAGGAAACCGTAAAAATATGCTCCAAGGCCTATTCATCACAATTTCACT
+AGGCGTATACTTCACCCTTCTCCAAGCCTCAGAATACTATGAAGCCTCAT
+TTACTATTTCAGATGGAGTATACGGATCAACATTTTTCGTAGCAACAGGG
+TTCCACGGACTACACGTAATTATCGGATCTACCTTCCTCATTGTATGTTT
+CCTACGCCAACTAAAATTCCACTTTACATCCAGCCACCACTTCGGATTCG
+AAGCAGCCGCTTGATACTGACACTTCGTCGACGTAGTCTGACTATTCTTG
+TACGTCTCTATTTATTGATGAGGATCCTATTCTTTTAGTATTGACCAGTA
+CAATTGACTTCCAATCAATCAGCTTCGGTATAACCCGAAAAAGAATAATA
+AACCTCATACTGACACTCCTCACTAACACATTACTAGCCTCGCTACTCGT
+ACTCATCGCATTCTGACTACCACAACTAAACATCTATGCAGAAAAAACCA
+GCCCATATGAATGCGGATTTGACCCTATAGGGTCAGCACGCCTCCCCTTC
+TCAATAAAATTTTTCTTAGTGGCCATTACATTTCTGCTATTCGACTTAGA
+AATTGCCCTCCTATTACCCCTTCCATGAGCATCCCAAACAACTAACCTAA
+ACACTATACTTATCATAGCACTAGTCCTAATCTCTCTTCTAGCCATCAGC
+CTAGCCTACGAATGAACCCAAAAAGGACTAGAATGAACTGAGTATGGTAA
+TTAGTTTAAACCAAAACAAATGATTTCGACTCATTAAACTATGATTAACT
+TCATAATTACCAACATGTCACTAGTCCATATTAATATCTTCCTAGCATTC
+ACAGTATCCCTCGTAGGCCTACTAATGTACCGATCCCACCTAATATCCTC
+ACTCCTATGCCTAGAAGGAATAATACTATCACTATTCGTCATAGCAACCA
+TAATAGTCCTAAACACCCACTTCACACTAGCTAGTATAATACCTATCATC
+TTACTAGTATTTGCTGCCTGCGAACGAGCTCTAGGATTATCCCTACTAGT
+CATAGTCTCCAATACTTATGGAGTAGACCACGTACAAAACCTTAACCTCC
+TCCAATGCTAAAAATTATCATTCCCACAATCATACTTATGCCCCTTACAT
+GACTATCAAAAAAGAATATAATCTGAATCAACACTACAACCTATAGTCTA
+TTAATCAGCCTTATCAGCCTATCCCTCCTAAACCAACCTAGCAACAATAG
+CCTAAACTTCTCACTAATATTCTTCTCCGATCCCCTATCAGCCCCACTTC
+TGGTGTTGACAACATGACTACTGCCACTAATACTCATAGCCAGCCAACAC
+CATCTATCTAAGGAACCACTAATCCGAAAAAAACTCTACATCACCATGCT
+AACCATACTTCAAACTTTCCTAATCATGACTTTTACCGCCACAGAACTAA
+TCTCCTTCTACATCCTATTTGAAGCCACATTAGTTCCAACACTAATTATC
+ATCACCCGCTGAGGCAACCAAACAGAACGCCTGAACGCAGGCCTCTACTT
+CCTATTCTACACACTAATAGGTTCCCTCCCACTCTTAGTTGCACTAATCT
+CTATCCAAAACCTAACAGGCTCACTAAACTTCCTATTAATTCAATACTGA
+AACCAAGCACTACCCGACTCTTGATCCAATATTTTCCTATGACTAGCATG
+TATAATAGCATTCATAGTCAAAATACCGGTATATGGTCTTCACCTCTGAC
+TCCCAAAAGCCCATGTAGAAGCCCCAATTGCCGGATCCATAGTGCTAGCA
+GCCATTCTACTAAAACTAGGAGGCTACGGAATACTACGAATTACAACAAT
+ACTAAACCCCCAAACTAGCTTTATAGCCTACCCCTTCCTCATACTATCCC
+TGTGAGGAATAATCATAACTAGTTCCATCTGCTTGCGACAAACCGATCTA
+AAATCACTTATTGCATACTCCTCTGTCAGCCACATAGCCCTAGTAATCGT
+AGCCGTCCTCATCCAAACACCATGAAGTTATATAGGAGCTACAGCCCTAA
+TAATCGCTCACGGCCTTACATCATCAATACTATTCTGCCTGGCAAACTCA
+AATTACGAACGTACCCATAGCCGAACTATAATCCTAGCCCGCGGGCTTCA
+AACACTTCTTCCCCTTATAGCAGCCTGATGACTATTAGCCAGCCTAACCA
+ACCTGGCCCTCCCTCCCAGCATTAACCTAATTGGAGAGCTATTCGTAGTA
+ATATCATCATTCTCATGATCAAATATTACCATTATCCTAATAGGAGCCAA
+TATCACCATCACCGCCCTCTACTCCCTATACATACTAATCACAACACAAC
+GAGGGAAATACACACACCATATCAACAGCATTAAACCTTCATTTACACGA
+GAAAACGCACTCATGGCCCTCCACATGACTCCCCTACTACTCCTATCACT
+TAACCCTAAAATTATCCTAGGCTTTACGTACTGTAAATATAGTTTAACAA
+AAACACTAGATTGTGGATCTAGAAACAGAAACTTAATATTTCTTATTTAC
+CGAGAAAGTATGCAAGAACTGCTAATTCATGCCCCCATGTCCAACAAACA
+TGGCTCTCTCAAACTTTTAAAGGATAGGAGCTATCCGTTGGTCTTAGGAA
+CCAAAAAATTGGTGCAACTCCAAATAAAAGTAATCAACATGTTCTCCTCC
+CTCATACTAGTTTCACTATTAGTACTAACCCTCCCAATCATATTATCAAT
+CTTCAATACCTACAAAAACAGCACGTTCCCGCATCATGTAAAAAACACTA
+TCTCATATGCCTTCATTACTAGCCTAATTCCCACTATAATATTTATTCAC
+TCTGGACAAGAAACAATTATCTCAAACTGACACTGAATAACCATACAAAC
+CCTCAAACTATCCCTAAGCTTCAAACTAGATTACTTCTCAATAATTTTCG
+TACCAGTAGCCCTATTCGTAACATGATCTATTATGGAATTCTCCCTATGA
+TACATGCACTCAGATCCTTACATTACTCGATTTTTTAAATACTTACTTAC
+ATTCCTCATCACTATAATAATTCTAGTCACAGCTAACAACCTTTTCCAAC
+TGTTCATCGGATGGGAGGGAGTAGGCATCATGTCATTCTTACTAATCGGA
+TGATGATACGGCCGAACAGATGCCAACACCGCGGCCCTTCAAGCAATCCT
+TTATAACCGCATCGGGGATATCGGCTTCATCATGGCCATAGCCTGATTCC
+TATTCAACACCAACACATGAGACCTCCAACAAATCTTCATACTCGACCCC
+AACCTTACCAACCTCCCGCTCCTAGGCCTCCTCCTAGCCGCAACTGGCAA
+ATCCGCTCAATTTGGACTCCACCCATGACTTCCTTCAGCCATAGAGGGCC
+CTACACCAGTCTCAGCCCTACTCCACTCCAGCACAATAGTTGTAGCAGGC
+GTCTTCCTGCTAATCCGCTTCCATCCACTAATAGAAAACAACAAAACAAT
+CCAGTCACTTACCCTATGCCTAGGAGCCATCACCACACTATTCACAGCAA
+TCTGCGCACTCACTCAAAACGATATCAAAAAAATCATTGCTTTCTCCACC
+TCCAGCCAACTAGGCCTGATAATCGTAACCATCGGTATCAATCAACCCTA
+CCTAGCATTCCTCCACATTTGCACTCACGCATTCTTCAAAGCTATACTAT
+TTATATGTTCCGGATCCATTATCCACAGCCTAAATGACGAGCAAGATATC
+CGAAAAATAGGCGGACTATTTAATGCAATACCCTTCACCACCACATCTCT
+AATTATTGGCAGCCTTGCACTCACCGGAATTCCTTTCCTCACAGGCTTCT
+ACTCCAAAGACCTCATCATCGAAACCGCCAACACATCGTACACCAACGCC
+TGAGCCCTACTAATAACTCTCATTGCCACATCCCTCACAGCTGTCTACAG
+TACCCGAATCATCTTCTTTGCACTCCTAGGGCAACCCCGCTTCCTCCCTC
+TGACCTCAATCAACGAAAATAACCCCTTTCTAATTAACTCCATCAAACGC
+CTCTTAATTGGCAGCATTTTTGCCGGATTCTTCATCTCCAACAATATCTA
+CCCCACAACCGTCCCAGAAATAACCATACCTACTTACATAAAACTCACCG
+CCCTCGCAGTAACCATCCTAGGATTTACACTAGCCCTAGAACTAAGCTTG
+ATAACCCATAACTTAAAACTAGAACACTCCACCAACGTATTCAAATTCTC
+CAACCTCCTAGGATACTACCCAACAATTATACACCGACTCCCACCGCTCG
+CTAACCTATCAATAAGCCAAAAATCAGCATCACTTCTACTAGACTCAATC
+TGACTAGAAAACATCCTGCCAAAATCTATCTCCCAGTTCCAAATAAAAAC
+CTCGATCCTAATTTCCACCCAAAAAGGACAAATCAAATTATATTTCCTCT
+CATTCCTCATCACCCTTACCCTAAGCATACTACTTTTTAATCTCCACGAG
+TAACCTCTAAAATTACCAAGACCCCAACAAGCAACGATCAACCAGTCACA
+ATCACAACCCAAGCCCCATAACTATACAATGCAGCAGCCCCTATAATTTC
+CTCACTAAACGCCCCAGAATCTCCAGTATCATAAATAGCTCAAGCCCCCA
+CACCACTAAACTTAAACACTACCCCCACTTCCTCACTCTTCAGAACATAT
+AAAACCAACATAACCTCCATCAACAACCCTAAAAGAAATACCCCCATAAC
+AGTCGTATTAGACACCCATACCTCAGGATACTGCTCAGTAGCCATAGCCG
+TTGTATAACCAAAAACAACCAACATTCCTCCCAAATAAATCAAAAACACC
+ATCAACCCCAAAAAGGACCCTCCAAAATTCATAATAATACCACAACCTAC
+CCCTCCACTTACAATCAGCACTAAACCCCCATAAATAGGTGAAGGTTTTG
+AAGAAAACCCCACAAAACTAACAACAAAAATAACACTCAAAATAAACACA
+ATATATGTCATCATTATTCCCACGTGGAATCTAACCACGACCAATGACAT
+GAAAAATCATCGTTGTATTTCAACTATAAGAACACCAATGACAAACATCC
+GGAAATCTCACCCACTAATTAAAATCATCAATCACTCTTTTATTGACCTA
+CCAGCCCCCTCAAACATTTCATCATGATGAAACTTCGGCTCCCTCCTAGG
+AATCTGCCTAATCCTCCAAATCTTAACAGGCCTATTCCTAGCCATACACT
+ACACATCAGACACGACAACTGCCTTCTCATCCGTCACTCACATCTGCCGA
+GACGTTAACTACGGATGAATTATTCGCTACCTCCATGCCAACGGAGCATC
+AATATTTTTTATCTGCCTCTTCATTCACGTAGGACGCGGCCTCTACTACG
+GCTCTTACACATTCCTAGAGACATGAAACATTGGAATCATCCTACTTTTC
+ACAGTTATAGCTACAGCATTCATGGGCTATGTCCTACCATGAGGCCAAAT
+ATCCTTTTGAGGAGCAACAGTCATCACGAACCTCCTATCAGCAATTCCCT
+ACATCGGTACTACCCTCGTCGAGTGAATCTGAGGTGGATTCTCAGTAGAC
+AAAGCCACCCTTACCCGATTTTTTGCTTTCCACTTCATCCTACCCTTCAT
+CATCACAGCCCTGGTAGTCGTACATTTACTATTTCTTCACGAAACAGGAT
+CTAATAACCCCTCAGGAATCCCATCCGATATGGACAAAATCCCATTCCAC
+CCATATTATACAATTAAAGACATCCTAGGACTCCTCCTCCTGATCTTGCT
+CCTACTAACTCTAGTATTATTCTCCCCCGACCTCCTAGGAGACCCAGACA
+ACTACACCCCAGCTAACCCTCTCAGCACTCCCCCTCATATTAAACCAGAA
+TGGTACTTCCTGTTTGCCTACGCCATCCTACGCTCCATTCCCAACAAACT
+AGGCGGCGTATTAGCCCTAATCCTCTCCATCCTGATCCTAGCACTCATCC
+CCACCCTCCACATATCAAAACAACGAAGCATAATATTCCGGCCTCTCAGC
+CAATGCGTATTCTGACTCTTAGTGGCAGACTTACTGACACTAACATGAAT
+CGGCGGACAGCCAGTGGAACACCCATACGTAATTATCGGCCAACTGGCCT
+CAATCCTCTACTTCTCCCTAATTCTCATTTTTATACCACTCGCAAGCACC
+ATCGAAAACAATCTTCTAAAATGAAGAGTCCCTGTAGTATATCGCACATT
+ACCCTGGTCTTGTAAACCAGAAAAGGGGGAAAACGTTTCCTCCCAAGGAC
+TATCAAGGAAGAAGCTCTAGCTCCACCATCAACACCCAAAGCTGAAATTC
+TACTTAAACTATTCCTTGATTTCTTCCCCTAAACGACAACAATTTACCCT
+CATGTGCTATGTCAGTATCAGATTATACCCCCACATAACACCATACCCAC
+CTGACATGCAATATCTTATGAATGGCCTATGTACGTCGTGCATTAAATTG
+TCTGCCCCATGAATAATAAGCATGTACATAATATCATTTATCTTACATAA
+GTACATTATATTATTGATCGTGCATACCCCATCCAAGTCAAATCATTTCC
+AGTCAACACGCATATCACAGCCCATGTTCCACGAGCTTAATCACCAAGCC
+GCGGGAAATCAGCAACCCTCCCAACTACGTGTCCCAATCCTCGCTCCGGG
+CCCATCCAAACGTGGGGGTTTCTACAATGAAACTATACCTGGCATCTGGT
+TCTTTCTTCAGGGCCATTCCCACCCAACCTCGCCCATTCTTTCCCCTTAA
+ATAAGACATCTCGATGGACTAATGACTAATCAGCCCATGCTCACACATAA
+CTGTGATTTCATGCATTTGGTATCTTTTTATATTTGGGGATGCTATGACT
+CAGCTATGGCCGTCAAAGGCCTCGACGCAGTCAATTAAATTGAAGCTGGA
+CTTAAATTGAACGTTATTCCTCCGCATCAGCAACCATAAGGTGTTATTCA
+GTCCATGGTAGCGGGACATAGGAAACAAgtgcacctgtgcacctgtgcac
+ctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacct
+gtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgt
+gcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgc
+acctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcac
+ctgtgcacctACCCGCGCAGTAAGCAAGTAATATAGCTTTCTTAATCAAA
+CCCCCCCTACCCCCCATTAAACTCCACATATGTACATTCAACACAATCTT
+GCCAAACCCCAAAAACAAGACTAAACAATGCACAATACTTCATGAAGCTT
+AACCCTCGCATGCCAACCATAATAACTCAACACACCTAACAATCTTAACA
+GAACTTTCCCCCCGCCATTAATACCAACATGCTACTTTAATCAATAAAAT
+TTCCATAGACAGGCATCCCCCTAGATCTAATTTTCTAAATCTGTCAACCC
+TTCTTCCCCC
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/sam_to_bam_in1.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,13 @@
+@HD	VN:1.0	SO:coordinate
+@SQ	SN:chrM	LN:100001
+@RG	ID:rg1	SM:s1
+HWI-EAS91_1_30788AAXX:1:1:1513:715	16	chrM	9563	25	36M	*	0	0	CTGACTACCACAACTAAACATCTATGCNNAAAAAAC	I+-II?IDIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1698:516	16	chrM	2735	25	36M	*	0	0	TTTACACTCAGAGGTTCAACTCCTCTCNNTAACAAC	I9IIIII5IIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1491:637	16	chrM	10864	25	36M	*	0	0	TGTAGAAGCCCCAATTGCCGGATCCATNNTGCTAGC	DBAIIIIIIIIIIIFIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1711:249	16	chrM	10617	25	36M	*	0	0	ACCAAACAGAACGCCTGAACGCAGGCCNNTACTTCC	IIIIIIIIIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1634:211	0	chrM	9350	25	36M	*	0	0	GAAGCAGNNGCTTGATACTGACACTTCGTCGACGTA	IIIIIII""IIIIIIIIIIIIIIIIIIIIII9IIDF	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1218:141	16	chrM	14062	25	36M	*	0	0	ACAAAACTAACAACAAAAATAACACTCNNAATAAAC	I+IIII1IIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1398:854	16	chrM	3921	25	36M	*	0	0	CACCCTTCCCGTACTAATAAATCCCCTNNTCTTCAC	IIIII=AIIIIIIIIIIIIIIBIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1310:991	16	chrM	10002	25	36M	*	0	0	CTCCTATGCCTAGAAGGAATAATACTANNACTATTC	I:2IEI:IIDIIIIII4IIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1716:413	0	chrM	6040	25	36M	*	0	0	GATCCAANNCTTTATCAACACCTATTCTGATTCTTC	IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1630:59	16	chrM	12387	25	36M	*	0	0	TCATACTCGACCCCAACCTTACCAACCNNCCGCTCC	FIIHII;IIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/sam_to_bam_noheader_in2.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,10 @@
+HWI-EAS91_1_30788AAXX:1:1:1513:715	16	chrM	9563	25	36M	*	0	0	CTGACTACCACAACTAAACATCTATGCNNAAAAAAC	I+-II?IDIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1698:516	16	chrM	2735	25	36M	*	0	0	TTTACACTCAGAGGTTCAACTCCTCTCNNTAACAAC	I9IIIII5IIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1491:637	16	chrM	10864	25	36M	*	0	0	TGTAGAAGCCCCAATTGCCGGATCCATNNTGCTAGC	DBAIIIIIIIIIIIFIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1711:249	16	chrM	10617	25	36M	*	0	0	ACCAAACAGAACGCCTGAACGCAGGCCNNTACTTCC	IIIIIIIIIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1634:211	0	chrM	9350	25	36M	*	0	0	GAAGCAGNNGCTTGATACTGACACTTCGTCGACGTA	IIIIIII""IIIIIIIIIIIIIIIIIIIIII9IIDF	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1218:141	16	chrM	14062	25	36M	*	0	0	ACAAAACTAACAACAAAAATAACACTCNNAATAAAC	I+IIII1IIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1398:854	16	chrM	3921	25	36M	*	0	0	CACCCTTCCCGTACTAATAAATCCCCTNNTCTTCAC	IIIII=AIIIIIIIIIIIIIIBIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1310:991	16	chrM	10002	25	36M	*	0	0	CTCCTATGCCTAGAAGGAATAATACTANNACTATTC	I:2IEI:IIDIIIIII4IIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1716:413	0	chrM	6040	25	36M	*	0	0	GATCCAANNCTTTATCAACACCTATTCTGATTCTTC	IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
+HWI-EAS91_1_30788AAXX:1:1:1630:59	16	chrM	12387	25	36M	*	0	0	TCATACTCGACCCCAACCTTACCAACCNNCCGCTCC	FIIHII;IIIIIIIIIIIIIIIIIIII""IIIIIII	NM:i:1	X1:i:1	MD:Z:7N0N27	RG:Z:rg1
Binary file samtools_view/test-data/sam_to_bam_out1.bam has changed
Binary file samtools_view/test-data/sam_to_bam_out2.bam has changed
Binary file samtools_view/test-data/sam_to_bam_out3.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/tag.as.sort.expected.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,24 @@
+@HD	VN:1.4	SO:unknown
+@SQ	SN:insert	LN:599
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+@SQ	SN:ref3	LN:4
+@PG	ID:llama
+@RG	ID:fish	PG:llama
+@RG	ID:cow	PU:13_&^&&*(:332	PG:donkey
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
+@CO	Do you know?
+r006	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:colt	PG:Z:donkey	FI:i:3
+x11	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:cow	PG:Z:bull	FI:Z:a
+r007	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt	PG:Z:donkey	AS:i:-5	FI:f:3.5
+x10	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:cow	PG:Z:bull	AS:i:0	FI:A:b
+r007	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:colt	PG:Z:donkey	AS:i:1	FI:i:4
+r005	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:colt	PG:Z:donkey	AS:i:10	FI:i:5
+x8	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:cow	PG:Z:bull	AS:i:10	FI:f:1.5
+r006	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	RG:Z:colt	PG:Z:donkey	AS:i:20	FI:f:4.5
+x9	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:cow	PG:Z:bull	AS:i:20	FI:i:1
+x7	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:cow	PG:Z:bull	AS:i:50	FI:i:2
+r005	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:colt	PG:Z:donkey	AS:i:100	FI:f:2.5
+x12	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow	PG:Z:bull	AS:i:65100
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/tag.fi.sort.expected.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,24 @@
+@HD	VN:1.4	SO:unknown
+@SQ	SN:insert	LN:599
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+@SQ	SN:ref3	LN:4
+@PG	ID:llama
+@RG	ID:fish	PG:llama
+@RG	ID:cow	PU:13_&^&&*(:332	PG:donkey
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
+@CO	Do you know?
+x12	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow	PG:Z:bull	AS:i:65100
+x10	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:cow	PG:Z:bull	AS:i:0	FI:A:b
+x11	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:cow	PG:Z:bull	FI:Z:a
+x9	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:cow	PG:Z:bull	AS:i:20	FI:i:1
+x8	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:cow	PG:Z:bull	AS:i:10	FI:f:1.5
+x7	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:cow	PG:Z:bull	AS:i:50	FI:i:2
+r005	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:colt	PG:Z:donkey	AS:i:100	FI:f:2.5
+r006	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:colt	PG:Z:donkey	FI:i:3
+r007	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt	PG:Z:donkey	AS:i:-5	FI:f:3.5
+r007	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:colt	PG:Z:donkey	AS:i:1	FI:i:4
+r006	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	RG:Z:colt	PG:Z:donkey	AS:i:20	FI:f:4.5
+r005	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:colt	PG:Z:donkey	AS:i:10	FI:i:5
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/tag.rg.n.sort.expected.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,28 @@
+@HD	VN:1.4	SO:unknown
+@SQ	SN:insert	LN:599
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+@SQ	SN:ref3	LN:4
+@RG	ID:fish	PG:donkey
+@RG	ID:cow	PU:13_&^&&*(:332
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
+@PG	ID:moose
+@PG	PP:moose	ID:cow
+@CO	
+r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	PG:Z:colt
+u1	4	*	0	30	23M	*	0	0	TAATTAAGTCTACAGAAAAAAAA	???????????????????????
+r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt	PG:Z:colt
+x1	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:colt	PG:Z:bull
+x2	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:colt	PG:Z:bull
+r000	99	insert	50	30	10M	=	80	30	ATTTAGCTAC	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r000	211	insert	80	30	10M	=	50	-30	CCCAATCATT	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r003	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:cow
+r003	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:cow	PG:Z:colt
+x6	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow
+r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:fish	PG:Z:colt
+r001	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:fish	PG:Z:colt
+x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:fish	PG:Z:bull
+x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:fish	PG:Z:bull
+x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:fish	PG:Z:bull
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/tag.rg.sort.expected.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,28 @@
+@HD	VN:1.4	SO:unknown
+@SQ	SN:insert	LN:599
+@SQ	SN:ref1	LN:45
+@SQ	SN:ref2	LN:40
+@SQ	SN:ref3	LN:4
+@RG	ID:fish	PG:donkey
+@RG	ID:cow	PU:13_&^&&*(:332
+@RG	PU:*9u8jkjjkjd:	ID:colt
+@PG	ID:bull	PP:donkey
+@PG	ID:donkey
+@PG	ID:moose
+@PG	PP:moose	ID:cow
+@CO	
+r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	PG:Z:colt
+u1	4	*	0	30	23M	*	0	0	TAATTAAGTCTACAGAAAAAAAA	???????????????????????
+r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt	PG:Z:colt
+x1	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:colt	PG:Z:bull
+x2	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:colt	PG:Z:bull
+r000	99	insert	50	30	10M	=	80	30	ATTTAGCTAC	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r000	211	insert	80	30	10M	=	50	-30	CCCAATCATT	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
+r003	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:cow
+r003	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:cow	PG:Z:colt
+x6	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow
+r001	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:fish	PG:Z:colt
+r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:fish	PG:Z:colt
+x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:fish	PG:Z:bull
+x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:fish	PG:Z:bull
+x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:fish	PG:Z:bull
Binary file samtools_view/test-data/test.bam has changed
Binary file samtools_view/test-data/test.cram has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/test.fa	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,3 @@
+>CHROMOSOME_I
+gcctaagcctaagcctaagcctaagcctaagcctaagcctaagcctaagc
+ctaagcctaagcctaagcctaagcctaagcctaagcctaagcctaagcct
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/test.fa.fai	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,1 @@
+CHROMOSOME_I	100	14	50	51
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/test.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,15 @@
+@HD	VN:1.4	SO:unsorted
+@SQ	SN:CHROMOSOME_I	LN:100
+@RG	ID:UNKNOWN	SM:UNKNOWN
+@PG	ID:bowtie2	PN:bowtie2	VN:2.0.0-beta5
+@PG	ID:0	CL:aaaaa/aaa/aaaaa/aaaaaa/aaaaaaaaa/aaa/iuc/package_aaaaaaaaa_x_y/aaaaaaaaaaaa/bin/aaaaaaaaaaaaaaaaa aaaaaaaaaa /aaaa/aaaaa/aaa/aaaaaaaaaaaaaaaaaaa/tools/aaaaaaaaa/test-data/test.cram aa /aaaa/aaaaa/aaa/aaaaaaaaaaaaaaaaaaa/tools/aaaaaaaaa/test-data/test.fa -O test	PN:samtools	VN:1.2
+SRR065390.14978392	16	CHROMOSOME_I	2	1	27M1D73M	*	0	0	CCTAGCCCTAACCCTAACCCTAACCCTAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	#############################@B?8B?BA@@DDBCDDCBC@CDCDCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	RG:Z:UNKNOWN	XG:i:1	XM:i:5	XN:i:0	XO:i:1	AS:i:-18	XS:i:-18	YT:Z:UU
+SRR065390.921023	16	CHROMOSOME_I	3	12	100M	*	0	0	CTAAGCCTAAATCTAAGCCTAACCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	###############################################???88:;98768700000<>:BBA?BBAB?BBBBBBBB>B>BB::;?:00000	RG:Z:UNKNOWN	XG:i:0	XM:i:3	XN:i:0	XO:i:0	AS:i:-6	XS:i:-13	YT:Z:UU
+SRR065390.1871511	16	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	<?@<@A8>0:BB@>B<=B@???@=8@B>BB@CA@DACDCBBCCCA@CCCCACCBCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	RG:Z:UNKNOWN	XG:i:0	XM:i:0	XN:i:0	XO:i:0	AS:i:0	XS:i:0	YT:Z:UU
+SRR065390.3743423	16	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	##################?6@:7<=@3=@ABAAB>BDBBABADABDDDBDDBCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	RG:Z:UNKNOWN	XG:i:0	XM:i:0	XN:i:0	XO:i:0	AS:i:0	XS:i:0	YT:Z:UU
+SRR065390.4251890	16	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	###########@BB=BCBBC?B>B;>B@@ADBBB@DBBBBDCCBBCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	RG:Z:UNKNOWN	XG:i:0	XM:i:0	XN:i:0	XO:i:0	AS:i:0	XS:i:0	YT:Z:UU
+SRR065390.5238868	16	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	@,=@@D8D;?BBB>;?BBB==BB@D;>D>BBB>BBDDB<DABADCACDCCBCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	RG:Z:UNKNOWN	XG:i:0	XM:i:0	XN:i:0	XO:i:0	AS:i:0	XS:i:0	YT:Z:UU
+SRR065390.6023338	0	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAAGCTAC	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC@CCDDDBCCABB=DABBA?################	RG:Z:UNKNOWN	XG:i:0	XM:i:3	XN:i:0	XO:i:0	AS:i:-6	XS:i:-6	YT:Z:UU
+SRR065390.6815812	16	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	###############?@.@?B;B0B=;<DADB@@BDDBBDDBCBCBD@CCDCCCCCCCDCCCCCCCCACCCCCCCCCCBCCCCCCDCCCCCCCCCCCBCC	RG:Z:UNKNOWN	XG:i:0	XM:i:0	XN:i:0	XO:i:0	AS:i:0	XS:i:0	YT:Z:UU
+SRR065390.6905811	16	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	#######################BB@>A<BC>@@BCCB@=BACBCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	RG:Z:UNKNOWN	XG:i:0	XM:i:0	XN:i:0	XO:i:0	AS:i:0	XS:i:0	YT:Z:UU
+SRR065390.8289592	16	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	###############################A?@C9@@BC=AABDD@A@DC@CB=@BA?6@CCAAC@+CCCCCCCCCCCCCCC@CCCCCCCCCCCCCCCC	RG:Z:UNKNOWN	XG:i:0	XM:i:0	XN:i:0	XO:i:0	AS:i:0	XS:i:0	YT:Z:UU
Binary file samtools_view/test-data/test2.cram has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/test_counts.tab	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,1 @@
+10
Binary file samtools_view/test-data/test_ds.bam has changed
Binary file samtools_view/test-data/test_ds.cram has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/test-data/test_ds.sam	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,8 @@
+@HD	VN:1.4	SO:unsorted
+@SQ	SN:CHROMOSOME_I	LN:100
+@RG	ID:UNKNOWN	SM:UNKNOWN
+@PG	ID:bowtie2	PN:bowtie2	VN:2.0.0-beta5
+@PG	ID:0	CL:aaaaa/aaa/aaaaa/aaaaaa/aaaaaaaaa/aaa/iuc/package_aaaaaaaaa_x_y/aaaaaaaaaaaa/bin/aaaaaaaaaaaaaaaaa aaaaaaaaaa /aaaa/aaaaa/aaa/aaaaaaaaaaaaaaaaaaa/tools/aaaaaaaaa/test-data/test.cram aa /aaaa/aaaaa/aaa/aaaaaaaaaaaaaaaaaaa/tools/aaaaaaaaa/test-data/test.fa -O test	PN:samtools	VN:1.2
+SRR065390.14978392	16	CHROMOSOME_I	2	1	27M1D73M	*	0	0	CCTAGCCCTAACCCTAACCCTAACCCTAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	#############################@B?8B?BA@@DDBCDDCBC@CDCDCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	RG:Z:UNKNOWN	XG:i:1	XM:i:5	XN:i:0	XO:i:1	AS:i:-18	XS:i:-18	YT:Z:UU
+SRR065390.921023	16	CHROMOSOME_I	3	12	100M	*	0	0	CTAAGCCTAAATCTAAGCCTAACCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA	###############################################???88:;98768700000<>:BBA?BBAB?BBBBBBBB>B>BB::;?:00000	RG:Z:UNKNOWN	XG:i:0	XM:i:3	XN:i:0	XO:i:0	AS:i:-6	XS:i:-13	YT:Z:UU
+SRR065390.6023338	0	CHROMOSOME_I	3	1	100M	*	0	0	CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAAGCTAC	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC@CCDDDBCCABB=DABBA?################	RG:Z:UNKNOWN	XG:i:0	XM:i:3	XN:i:0	XO:i:0	AS:i:-6	XS:i:-6	YT:Z:UU
Binary file samtools_view/test-data/test_input_1_a.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/tool-data/fasta_indexes.loc.sample	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,29 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of Samtools indexed sequences data files.  You will need
+#to create these data files and then create a fasta_indexes.loc file
+#similar to this one (store it in this directory) that points to
+#the directories in which those files are stored. The fasta_indexes.loc
+#file has this format (white space characters are TAB characters):
+#
+# <unique_build_id>	<dbkey>	<display_name>	<file_base_path>
+#
+#So, for example, if you had hg19 Canonical indexed stored in
+#
+# /depot/data2/galaxy/hg19/sam/,
+#
+#then the fasta_indexes.loc entry would look like this:
+#
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
+#
+#and your /depot/data2/galaxy/hg19/sam/ directory
+#would contain hg19canon.fa and hg19canon.fa.fai files.
+#
+#Your fasta_indexes.loc file should include an entry per line for
+#each index set you have stored.  The file in the path does actually
+#exist, but it should never be directly used. Instead, the name serves
+#as a prefix for the index file.  For example:
+#
+#hg18canon	hg18	Human (Homo sapiens): hg18 Canonical	/depot/data2/galaxy/hg18/sam/hg18canon.fa
+#hg18full	hg18	Human (Homo sapiens): hg18 Full	/depot/data2/galaxy/hg18/sam/hg18full.fa
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
+#hg19full	hg19	Human (Homo sapiens): hg19 Full	/depot/data2/galaxy/hg19/sam/hg19full.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/tool_data_table_conf.xml.sample	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,7 @@
+<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
+<tables>
+    <table name="fasta_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/fasta_indexes.loc" />
+    </table>
+</tables>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/samtools_view/tool_data_table_conf.xml.test	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,6 @@
+<tables>
+    <table name="fasta_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="${__HERE__}/test-data/cached_locally/fasta_indexes.loc" />
+    </table>
+</tables>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cached_locally/chr_m.fasta	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,335 @@
+>chrM
+GTTAATGTAGCTTAATAATATAAAGCAAGGCACTGAAAATGCCTAGATGA
+GTATTCTTACTCCATAAACACATAGGCTTGGTCCTAGCCTTTTTATTAGT
+TATTAATAGAATTACACATGCAAGTATCCGCACCCCAGTGAGAATGCCCT
+CTAAATCACGTCTCTACGATTAAAAGGAGCAGGTATCAAGCACACTAGAA
+AGTAGCTCATAACACCTTGCTCAGCCACACCCCCACGGGACACAGCAGTG
+ATAAAAATTAAGCTATGAACGAAAGTTCGACTAAGTCATATTAAATAAGG
+GTTGGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAATTA
+ATAAATCTCCGGCGTAAAGCGTGTCAAAGACTAATACCAAAATAAAGTTA
+AAACCCAGTTAAGCCGTAAAAAGCTACAACCAAAGTAAAATAGACTACGA
+AAGTGACTTTAATACCTCTGACTACACGATAGCTAAGACCCAAACTGGGA
+TTAGATACCCCACTATGCTTAGCCCTAAACTAAAATAGCTTACCACAACA
+AAGCTATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTT
+GGCGGTGCTTTACATCCCTCTAGAGGAGCCTGTTCCATAATCGATAAACC
+CCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT
+CAGCAAACCCTAAACAAGGTACCGAAGTAAGCACAAATATCCAACATAAA
+AACGTTAGGTCAAGGTGTAGCCCATGGGATGGAGAGAAATGGGCTACATT
+TTCTACCCTAAGAACAAGAACTTTAACCCGGACGAAAGTCTCCATGAAAC
+TGGAGACTAAAGGAGGATTTAGCAGTAAATTAAGAATAGAGAGCTTAATT
+GAATCAGGCCATGAAGCGCGCACACACCGCCCGTCACCCTCCTTAAATAT
+CACAAATCATAACATAACATAAAACCGTGACCCAAACATATGAAAGGAGA
+CAAGTCGTAACAAGGTAAGTATACCGGAAGGTGTACTTGGATAACCAAAG
+TGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATTTCACTCAAAA
+TGAACACTTTGAACTAAAGCTAGCCCAAACAATACCTAATTCAATTACCC
+TTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAG
+AAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAACGATGAAAG
+ATGCATTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT
+AATGATTTAACTAGAATAAACTTAGCAAAGAGAACTTAAGCTAAGCACCC
+CGAAACCAGACGAGCTACCTATGAACAGTTACAAATGAACCAACTCATCT
+ATGTCGCAAAATAGTGAGAAGATTCGTAGGTAGAGGTGAAAAGCCCAACG
+AGCCTGGTGATAGCTGGTTGTCCAGAAACAGAATTTCAGTTCAAATTTAA
+ATTTACCTAAAAACTACTCAATTCTAATGTAAATTTAAATTATAGTCTAA
+AAAGGTACAGCTTTTTAGATACAGGTTACAACCTTCATTAGAGAGTAAGA
+ACAAGATAAACCCATAGTTGGCTTAAAAGCAGCCATCAATTAAGAAAGCG
+TTCAAGCTCAACGACACATCTATCTTAATCCCAACAATCAACCCAAACTA
+ACTCCTAATCTCATACTGGACTATTCTATCAACACATAGAAGCAATAATG
+TTAATATGAGTAACAAGAATTATTTCTCCTTGCATAAGCTTATATCAGAA
+CGAATACTCACTGATAGTTAACAACAAGATAGGGATAATCCAAAAACTAA
+TCATCTATTTAAACCATTGTTAACCCAACACAGGCATGCATCTATAAGGA
+AAGATTAAAAGAAGTAAAAGGAACTCGGCAAACACAAACCCCGCCTGTTT
+ACCAAAAACATCACCTCTAGCATTTCCAGTATTAGAGGCACTGCCTGCCC
+AGTGACATCTGTTtaaacggccgcggtatcctaaccgtgcaaaggtagca
+taatcacttgttccctaaatagggacttgtatgaatggccacacgagggt
+tttactgtctcttacttccaatcagtgaaattgaccttcccgtgaagagg
+cgggaatgactaaataagacgagaagaccctatggagcttTAATTAACTG
+ATTCACAAAAAACAACACACAAACCTTAACCTTCAGGGACAACAAAACTT
+TTGATTGAATCAGCAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAAC
+CTCCGAGTGATTTAAATCCAGACTAACCAGTCAAAATATATAATCACTTA
+TTGATCCAAACCATTGATCAACGGAACAAGTTACCCTAGGGATAACAGCG
+CAATCCTATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCGATG
+TTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTT
+CAACGATTAAAGTCTTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGT
+CGGTTTCTATCTATTCTATACTTTTCCCAGTACGAAAGGACAAGAAAAGT
+AGGGCCCACTTTACAAGAAGCGCCCTCAAACTAATAGATGACATAATCTA
+AATCTAACTAATTTATAACTTCTACCGCCCTAGAACAGGGCTCgttaggg
+tggcagagcccggaaattgcataaaacttaaacctttacactcagaggtt
+caactcctctccctaacaacaTGTTCATAATTAACGTCCTCCTCCTAATT
+GTCCCAATCTTGCTCGCCGTAGCATTCCTCACACTAGTTGAACGAAAAGT
+CTTAGGCTATATGCAACTTCGCAAAGGACCCAACATCGTAGGCCCCTATG
+GCCTACTACAACCTATTGCCGATGCCCTCAAACTATTTATCAAAGAGCCA
+CTACAACCACTAACATCATCGACATCCATATTCATCATCGCACCAATCCT
+AGCCCTAACCCTGGCCTTAACCATATGAATCCCTCTGCCCATACCATACC
+CACTAATCAACATAAACCTAGGAATTCTATTCATACTAGCCATGTCCAGC
+CTAGCTGTCTACTCAATCCTTTGATCAGGATGGGCCTCAAACTCAAAATA
+CGCCCTAATTGGAGCTCTACGAGCAGTAGCACAAACCATCTCATACGAAG
+TAACTCTAGCAATCATCCTACTCTCAGTCCTCCTAATAAGCGGATCATTC
+ACATTATCAACACTTATTATTACCCAAGAATACCTCTGATTAATCTTCCC
+ATCATGACCCTTAGCCATAATGTGATTCATCTCAACATTAGCCGAAACCA
+ACCGAGCTCCATTTGACCTAACAGAAGGAGAATCAGAACTCGTCTCTGGA
+TTCAACGTTGAATACGCAGCCGGCCCATTTGCTCTATTCTTCCTAGCAGA
+ATACGCAAACATCATCATGATAAACATCTTCACAACAACCCTATTTCTAG
+GAGCATTTCACAACCCCTACCTGCCAGAACTCTACTCAATTAATTTCACC
+ATTAAAGCTCTCCTTCTAACATGTTCCTTCCTATGAATCCGAGCATCCTA
+CCCACGATTCCGATATGACCAACTTATACACCTCCTATGAAAGAACTTCC
+TACCACTCACACTAGCCCTCTGCATATGACACGTCTCACTTCCAATCATA
+CTATCCAGCATCCCACCACAAACATAGGAAATATGTCTGACAAAAGAGTT
+ACTTTGATAGAGTAAAACATAGAGGCTCAAACCCTCTTATTTctagaact
+acaggaattgaacctgctcctgagaattcaaaatcctccgtgctaccgaa
+ttacaccatgtcctaCAAGTAAGGTCAGCTAAATAAGCTATCGGGCCCAT
+ACCCCGAAAATGTTGGATTACACCCTTCCCGTACTAATAAATCCCCTTAT
+CTTCACAACTATTCTAATAACAGTTCTTCTAGGAACTATAATCGTTATAA
+TAAGCTCACACTGACTAATAATCTGAATCGGATTTGAAATAAATCTACTA
+GCCATTATCCCTATCCTAATAAAAAAGTACAATCCCCGAACCATAGAAGC
+CTCCACCAAATATTTTCTAACCCAAGCCACCGCATCAATACTCCTCATAA
+TAGCGATCATCATTAACCTCATACACTCAGGCCAATGAACAATCACAAAA
+GTCTTCAACCCCACAGCGTCCATCATTATAACTTCAGCTCTCGCCATAAA
+ACTTGGACTCACACCATTCCACTTCTGAGTACCCGAAGTCACACAGGGCA
+TCTCATTAACATCAGGTCTCATCCTACTTACATGACAAAAACTAGCCCCA
+ATATCAATCCTATATCAAATCTCACCCTCAATTAACCTAAATATCTTATT
+AACTATAGCCGTACTGTCAATCCTAGTAGGAGGCTGAGGCGGTCTCAACC
+AAACCCAACTACGAAAAATCATAGCATACTCGTCAATCGCGCATATAGGA
+TGAATAACAGCTGTCCTAGTATATAACCCAACACTAACAATACTAAACAT
+ATTAATTTACATTATAATAACACTCACAATATTCATACTATTTATCCACA
+GCTCCTCTACTACAACACTATCACTCTCCCACACATGAAACAAAATACCT
+CTAACCACTACACTAATCTTAATTACCTTACTATCCATAGGAGGCCTCCC
+CCCACTATCAGGATTCATACCCAAATGAATAATCATTCAAGAGCTCACCA
+AAAATAGCAGCATCATCCTCCCCACACTAATAGCCATTATAGCACTACTC
+AACCTCTACTTCTACATACGACTAACCTATTCCACCTCACTGACCATATT
+CCCATCCACAAACAACATAAAAATAAAATGACAATTCGAAACCAAACGAA
+TTACTCTCTTACCCCCGTTAATTGTTATATCCTCCCTACTCCTCCCCCTA
+ACCCCCATACTATCAATTTTGGACTAGGAATTTAGGTTAACATCCCAGAC
+CAAGAGCCTTCAAAGCTCTAAGCAAGTGAATCCACTTAATTCCTGCATAC
+TAAGGACTGCGAGACTCTATCTCACATCAATTGAACGCAAATCAAACTCT
+TTTATTAAGCTAAGCCCTTACTAGATTGGTGGGCTACCATCCCACGAAAT
+TTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTTCTCC
+CGCCGCCTAGAAAAAAAGGCGGGAGAAGCCCCGGCAGAAATTGAAGCTGC
+TCCTTTGAATTTGCAATTCAATGTGAAAATTCACCACGGGACTTGATAAG
+AAGAGGATTCCAACCCCTGTCTTTAGATTTACAGTCTAATGCTTACTCAG
+CCATCTTACCTATGTTCATCAACCGCTGACTATTTTCAACTAACCACAAA
+GACATCGGCACTCTGTACCTCCTATTCGGCGCTTGAGCTGGAATAGTAGG
+AACTGCCCTAAGCCTCCTAATCCGTGCTGAATTAGGCCAACCTGGGACCC
+TACTAGGAGATGATCAGATCTACAATGTCATTGTAACCGCCCATGCATTC
+GTAATAATTTTCTTTATGGTCATACCCATTATAATCGGAGGATTCGGAAA
+CTGATTAGTCCCCCTGATAATTGGAGCACCTGATATAGCTTTCCCCCGAA
+TAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTTCTTCTC
+GCTTCCTCAATAATTGAAGCAGGTGCCGGAACAGGCTGAACCGTATATCC
+TCCTCTAGCTGGAAATCTGGCGCATGCAGGAGCCTCTGTTGACTTAACCA
+TTTTCTCTCTCCACCTAGCTGGGGTGTCCTCGATTTTAGGTGCCATCAAC
+TTTATTACCACAATCATTAACATAAAACCACCAGCCCTATCCCAATATCA
+AACCCCCCTATTCGTTTGATCTGTCCTTATTACGGCAGTACTCCTTCTCC
+TAGCCCTCCCGGTCCTAGCAGCAGGCATTACCATGCTTCTCACAGACCGT
+AACCTGAACACTACTTTCTTCGACCCCGCAGGAGGAGGGGATCCAATCCT
+TTATCAACACCTATTCTGATTCTTCGGACACCCCGAAGTCTATATTCTTA
+TCCTACCAGGCTTCGGTATAATCTCACACATCGTCACATACTACTCAGGT
+AAAAAGGAACCTTTTGGCTACATGGGTATAGTGTGAGCTATAATATCCAT
+TGGCTTTCTAGGCTTCATCGTATGGGCTCACCACATGTTTACAGTAGGGA
+TAGACGTTGACACACGAGCATACTTCACATCAGCTACCATAATCATCGCT
+ATCCCTACTGGTGTAAAAGTATTCAGCTGACTAGCCACCCTGCACGGAGG
+AAATATCAAATGATCTCCAGCTATACTCTGAGCTCTAGGCTTCATCTTCT
+TATTCACAGTAGGAGGTCTAACAGGAATCGTCCTAGCTAACTCATCCCTA
+GATATTGTTCTCCACGATACTTATTATGTAGTAGCACATTTCCATTATGT
+CCTGTCTATAGGAGCAGTCTTCGCCATTATGGGGGGATTTGTACACTGAT
+TCCCTCTATTCTCAGGATACACACTCAACCAAACCTGAGCAAAAATCCAC
+TTTACAATTATATTCGTAGGGGTAAATATAACCTTCTTCCCACAACATTT
+CCTTGGCCTCTCAGGAATGCCACGACGCTATTCTGATTATCCAGACGCAT
+ATACAACATGAAATACCATCTCATCCATAGGATCTTTTATCTCACTTACA
+GCAGTGATACTAATAATTTTCATAATTTGAGAAGCGTTCGCATCCAAACG
+AGAAGTGTCTACAGTAGAATTAACCTCAACTAATCTGGAATGACTACACG
+GATGCCCCCCACCATACCACACATTTGAAGAACCCACCTACGTAAACCTA
+AAAtaagaaaggaaggaatcgaaccccctctaactggtttcaagccaata
+tcataaccactatgtctttctcCATCAATTGAGGTATTAGTAAAAATTAC
+ATGACTTTGTCAAAGTTAAATTATAGGTTAAACCCCTATATACCTCTATG
+GCCTACCCCTTCCAACTAGGATTCCAAGACGCAACATCCCCTATTATAGA
+AGAACTCCTACACTTCCACGACCACACACTAATAATCGTATTCCTAATTA
+GCTCTCTAGTATTATATATTATCTCATCAATACTAACAACTAAATTAACC
+CATACCAGCACCATAGATGCTCAAGAAGTAGAGACAATTTGAACGATTTT
+ACCAGCCATCATCCTTATTCTAATCGCCCTCCCATCCCTACGAATTCTAT
+ATATAATAGATGAAATCAATAATCCGTCCCTCACAGTCAAAACAATAGGC
+CACCAATGATACTGAAGCTACGAGTATACCGATTACGAAGACTTGACCTT
+TGACTCCTACATGATCCCCACATCAGACCTAAAACCAGGAGAATTACGTC
+TTCTAGAAGTCGACAATCGAGTGGTTCTCCCCATAGAAATAACCATCCGA
+ATGCTAATTTCATCCGAAGACGTCCTACACTCATGAGCTGTGCCCTCCCT
+AGGCCTAAAAACAGACGCTATCCCTGGGCGCCTAAATCAGACAACTCTCG
+TGGCCTCTCGACCAGGACTTTACTACGGTCAATGCTCAGAGATCTGCGGA
+TCAAACCACAGCTTTATACCAATTGTCCTTGAACTAGTTCCACTGAAACA
+CTTCGAAGAATGATCTGCATCAATATTATAAAGTCACTAAGAAGCTATTA
+TAGCATTAACCTTTTAAGTTAAAGATTGAGGGTTCAACCCCCTCCCTAGT
+GATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTCAAT
+AATCCTAACTCTATTTATTGTATTTCAACTAAAAATCTCAAAGCACTCCT
+ATCCGACACACCCAGAAGTAAAGACAACCAAAATAACAAAACACTCTGCC
+CCTTGAGAATCAAAATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCA
+ACAATAGTAGGCCTCCCTATTGTAATTCTGATCATCATATTTCCCAGCAT
+CCTATTCCCCTCACCCAACCGACTAATCAACAATCGCCTAATCTCAATTC
+AACAATGGCTAGTCCAACTTACATCAAAACAAATAATAGCTATCCATAAC
+AGCAAAGGACAAACCTGAACTCTTATACTCATATCACTGATCCTATTCAT
+TGGCTCAACAAACTTATTAGGCCTACTACCTCACTCATTTACACCAACAA
+CACAACTATCAATAAACCTAGGCATAGCTATTCCCCTATGGGCAGGGACA
+GTATTCATAGGCTTTCGTCACAAAACAAAAGCAGCCCTAGCCCACTTTCT
+ACCTCAAGGGACGCCCATTTTCCTCATCCCCATACTAGTAATTATCGAGA
+CTATCAGCCTATTTATTCAACCTGTAGCCCTAGCCGTGCGGCTAACCGCT
+AACATTACCGCCGGACACCTCCTAATACACCTCATCGGAGGGGCAACACT
+AGCCCTCATAAGCATCAGCCCCTCAACAGCCCTTATTACGTTTATCATCC
+TAATTCTACTAACTATCCTCGAATTCGCAGTAGCTATAATCCAAGCCTAC
+GTATTCACTCTCCTGGTAAGCCTTTACTTACACGACAACACCTAATGACC
+CACCAAACCCACGCTTACCACATAGTAAACCCCAGCCCATGACCACTTAC
+AGGAGCCCTATCAGCCCTCCTGATAACATCAGGACTAGCCATGTGATTTC
+ACTTTAACTCAACCTTACTTCTAGCTATAGGGCTATTAACTAACATCCTT
+ACCATATATCAATGATGACGAGACATCATCCGAGAAAGCACATTCCAAGG
+CCATCACACATCAATCGTTCAAAAGGGACTCCGATATGGCATAATCCTTT
+TTATTATCTCAGAAGTCTTCTTCTTCTCTGGCTTCTTCTGAGCCTTTTAC
+CACTCAAGCCTAGCCCCCACACCCGAACTAGGCGGCTGCTGACCACCCAC
+AGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCTTACTCAACACCTCAG
+TGCTCCTAGCATCTGGAGTCTCTATCACCTGAGCCCACCATAGCCTAATA
+GAAGGAAACCGTAAAAATATGCTCCAAGGCCTATTCATCACAATTTCACT
+AGGCGTATACTTCACCCTTCTCCAAGCCTCAGAATACTATGAAGCCTCAT
+TTACTATTTCAGATGGAGTATACGGATCAACATTTTTCGTAGCAACAGGG
+TTCCACGGACTACACGTAATTATCGGATCTACCTTCCTCATTGTATGTTT
+CCTACGCCAACTAAAATTCCACTTTACATCCAGCCACCACTTCGGATTCG
+AAGCAGCCGCTTGATACTGACACTTCGTCGACGTAGTCTGACTATTCTTG
+TACGTCTCTATTTATTGATGAGGATCCTATTCTTTTAGTATTGACCAGTA
+CAATTGACTTCCAATCAATCAGCTTCGGTATAACCCGAAAAAGAATAATA
+AACCTCATACTGACACTCCTCACTAACACATTACTAGCCTCGCTACTCGT
+ACTCATCGCATTCTGACTACCACAACTAAACATCTATGCAGAAAAAACCA
+GCCCATATGAATGCGGATTTGACCCTATAGGGTCAGCACGCCTCCCCTTC
+TCAATAAAATTTTTCTTAGTGGCCATTACATTTCTGCTATTCGACTTAGA
+AATTGCCCTCCTATTACCCCTTCCATGAGCATCCCAAACAACTAACCTAA
+ACACTATACTTATCATAGCACTAGTCCTAATCTCTCTTCTAGCCATCAGC
+CTAGCCTACGAATGAACCCAAAAAGGACTAGAATGAACTGAGTATGGTAA
+TTAGTTTAAACCAAAACAAATGATTTCGACTCATTAAACTATGATTAACT
+TCATAATTACCAACATGTCACTAGTCCATATTAATATCTTCCTAGCATTC
+ACAGTATCCCTCGTAGGCCTACTAATGTACCGATCCCACCTAATATCCTC
+ACTCCTATGCCTAGAAGGAATAATACTATCACTATTCGTCATAGCAACCA
+TAATAGTCCTAAACACCCACTTCACACTAGCTAGTATAATACCTATCATC
+TTACTAGTATTTGCTGCCTGCGAACGAGCTCTAGGATTATCCCTACTAGT
+CATAGTCTCCAATACTTATGGAGTAGACCACGTACAAAACCTTAACCTCC
+TCCAATGCTAAAAATTATCATTCCCACAATCATACTTATGCCCCTTACAT
+GACTATCAAAAAAGAATATAATCTGAATCAACACTACAACCTATAGTCTA
+TTAATCAGCCTTATCAGCCTATCCCTCCTAAACCAACCTAGCAACAATAG
+CCTAAACTTCTCACTAATATTCTTCTCCGATCCCCTATCAGCCCCACTTC
+TGGTGTTGACAACATGACTACTGCCACTAATACTCATAGCCAGCCAACAC
+CATCTATCTAAGGAACCACTAATCCGAAAAAAACTCTACATCACCATGCT
+AACCATACTTCAAACTTTCCTAATCATGACTTTTACCGCCACAGAACTAA
+TCTCCTTCTACATCCTATTTGAAGCCACATTAGTTCCAACACTAATTATC
+ATCACCCGCTGAGGCAACCAAACAGAACGCCTGAACGCAGGCCTCTACTT
+CCTATTCTACACACTAATAGGTTCCCTCCCACTCTTAGTTGCACTAATCT
+CTATCCAAAACCTAACAGGCTCACTAAACTTCCTATTAATTCAATACTGA
+AACCAAGCACTACCCGACTCTTGATCCAATATTTTCCTATGACTAGCATG
+TATAATAGCATTCATAGTCAAAATACCGGTATATGGTCTTCACCTCTGAC
+TCCCAAAAGCCCATGTAGAAGCCCCAATTGCCGGATCCATAGTGCTAGCA
+GCCATTCTACTAAAACTAGGAGGCTACGGAATACTACGAATTACAACAAT
+ACTAAACCCCCAAACTAGCTTTATAGCCTACCCCTTCCTCATACTATCCC
+TGTGAGGAATAATCATAACTAGTTCCATCTGCTTGCGACAAACCGATCTA
+AAATCACTTATTGCATACTCCTCTGTCAGCCACATAGCCCTAGTAATCGT
+AGCCGTCCTCATCCAAACACCATGAAGTTATATAGGAGCTACAGCCCTAA
+TAATCGCTCACGGCCTTACATCATCAATACTATTCTGCCTGGCAAACTCA
+AATTACGAACGTACCCATAGCCGAACTATAATCCTAGCCCGCGGGCTTCA
+AACACTTCTTCCCCTTATAGCAGCCTGATGACTATTAGCCAGCCTAACCA
+ACCTGGCCCTCCCTCCCAGCATTAACCTAATTGGAGAGCTATTCGTAGTA
+ATATCATCATTCTCATGATCAAATATTACCATTATCCTAATAGGAGCCAA
+TATCACCATCACCGCCCTCTACTCCCTATACATACTAATCACAACACAAC
+GAGGGAAATACACACACCATATCAACAGCATTAAACCTTCATTTACACGA
+GAAAACGCACTCATGGCCCTCCACATGACTCCCCTACTACTCCTATCACT
+TAACCCTAAAATTATCCTAGGCTTTACGTACTGTAAATATAGTTTAACAA
+AAACACTAGATTGTGGATCTAGAAACAGAAACTTAATATTTCTTATTTAC
+CGAGAAAGTATGCAAGAACTGCTAATTCATGCCCCCATGTCCAACAAACA
+TGGCTCTCTCAAACTTTTAAAGGATAGGAGCTATCCGTTGGTCTTAGGAA
+CCAAAAAATTGGTGCAACTCCAAATAAAAGTAATCAACATGTTCTCCTCC
+CTCATACTAGTTTCACTATTAGTACTAACCCTCCCAATCATATTATCAAT
+CTTCAATACCTACAAAAACAGCACGTTCCCGCATCATGTAAAAAACACTA
+TCTCATATGCCTTCATTACTAGCCTAATTCCCACTATAATATTTATTCAC
+TCTGGACAAGAAACAATTATCTCAAACTGACACTGAATAACCATACAAAC
+CCTCAAACTATCCCTAAGCTTCAAACTAGATTACTTCTCAATAATTTTCG
+TACCAGTAGCCCTATTCGTAACATGATCTATTATGGAATTCTCCCTATGA
+TACATGCACTCAGATCCTTACATTACTCGATTTTTTAAATACTTACTTAC
+ATTCCTCATCACTATAATAATTCTAGTCACAGCTAACAACCTTTTCCAAC
+TGTTCATCGGATGGGAGGGAGTAGGCATCATGTCATTCTTACTAATCGGA
+TGATGATACGGCCGAACAGATGCCAACACCGCGGCCCTTCAAGCAATCCT
+TTATAACCGCATCGGGGATATCGGCTTCATCATGGCCATAGCCTGATTCC
+TATTCAACACCAACACATGAGACCTCCAACAAATCTTCATACTCGACCCC
+AACCTTACCAACCTCCCGCTCCTAGGCCTCCTCCTAGCCGCAACTGGCAA
+ATCCGCTCAATTTGGACTCCACCCATGACTTCCTTCAGCCATAGAGGGCC
+CTACACCAGTCTCAGCCCTACTCCACTCCAGCACAATAGTTGTAGCAGGC
+GTCTTCCTGCTAATCCGCTTCCATCCACTAATAGAAAACAACAAAACAAT
+CCAGTCACTTACCCTATGCCTAGGAGCCATCACCACACTATTCACAGCAA
+TCTGCGCACTCACTCAAAACGATATCAAAAAAATCATTGCTTTCTCCACC
+TCCAGCCAACTAGGCCTGATAATCGTAACCATCGGTATCAATCAACCCTA
+CCTAGCATTCCTCCACATTTGCACTCACGCATTCTTCAAAGCTATACTAT
+TTATATGTTCCGGATCCATTATCCACAGCCTAAATGACGAGCAAGATATC
+CGAAAAATAGGCGGACTATTTAATGCAATACCCTTCACCACCACATCTCT
+AATTATTGGCAGCCTTGCACTCACCGGAATTCCTTTCCTCACAGGCTTCT
+ACTCCAAAGACCTCATCATCGAAACCGCCAACACATCGTACACCAACGCC
+TGAGCCCTACTAATAACTCTCATTGCCACATCCCTCACAGCTGTCTACAG
+TACCCGAATCATCTTCTTTGCACTCCTAGGGCAACCCCGCTTCCTCCCTC
+TGACCTCAATCAACGAAAATAACCCCTTTCTAATTAACTCCATCAAACGC
+CTCTTAATTGGCAGCATTTTTGCCGGATTCTTCATCTCCAACAATATCTA
+CCCCACAACCGTCCCAGAAATAACCATACCTACTTACATAAAACTCACCG
+CCCTCGCAGTAACCATCCTAGGATTTACACTAGCCCTAGAACTAAGCTTG
+ATAACCCATAACTTAAAACTAGAACACTCCACCAACGTATTCAAATTCTC
+CAACCTCCTAGGATACTACCCAACAATTATACACCGACTCCCACCGCTCG
+CTAACCTATCAATAAGCCAAAAATCAGCATCACTTCTACTAGACTCAATC
+TGACTAGAAAACATCCTGCCAAAATCTATCTCCCAGTTCCAAATAAAAAC
+CTCGATCCTAATTTCCACCCAAAAAGGACAAATCAAATTATATTTCCTCT
+CATTCCTCATCACCCTTACCCTAAGCATACTACTTTTTAATCTCCACGAG
+TAACCTCTAAAATTACCAAGACCCCAACAAGCAACGATCAACCAGTCACA
+ATCACAACCCAAGCCCCATAACTATACAATGCAGCAGCCCCTATAATTTC
+CTCACTAAACGCCCCAGAATCTCCAGTATCATAAATAGCTCAAGCCCCCA
+CACCACTAAACTTAAACACTACCCCCACTTCCTCACTCTTCAGAACATAT
+AAAACCAACATAACCTCCATCAACAACCCTAAAAGAAATACCCCCATAAC
+AGTCGTATTAGACACCCATACCTCAGGATACTGCTCAGTAGCCATAGCCG
+TTGTATAACCAAAAACAACCAACATTCCTCCCAAATAAATCAAAAACACC
+ATCAACCCCAAAAAGGACCCTCCAAAATTCATAATAATACCACAACCTAC
+CCCTCCACTTACAATCAGCACTAAACCCCCATAAATAGGTGAAGGTTTTG
+AAGAAAACCCCACAAAACTAACAACAAAAATAACACTCAAAATAAACACA
+ATATATGTCATCATTATTCCCACGTGGAATCTAACCACGACCAATGACAT
+GAAAAATCATCGTTGTATTTCAACTATAAGAACACCAATGACAAACATCC
+GGAAATCTCACCCACTAATTAAAATCATCAATCACTCTTTTATTGACCTA
+CCAGCCCCCTCAAACATTTCATCATGATGAAACTTCGGCTCCCTCCTAGG
+AATCTGCCTAATCCTCCAAATCTTAACAGGCCTATTCCTAGCCATACACT
+ACACATCAGACACGACAACTGCCTTCTCATCCGTCACTCACATCTGCCGA
+GACGTTAACTACGGATGAATTATTCGCTACCTCCATGCCAACGGAGCATC
+AATATTTTTTATCTGCCTCTTCATTCACGTAGGACGCGGCCTCTACTACG
+GCTCTTACACATTCCTAGAGACATGAAACATTGGAATCATCCTACTTTTC
+ACAGTTATAGCTACAGCATTCATGGGCTATGTCCTACCATGAGGCCAAAT
+ATCCTTTTGAGGAGCAACAGTCATCACGAACCTCCTATCAGCAATTCCCT
+ACATCGGTACTACCCTCGTCGAGTGAATCTGAGGTGGATTCTCAGTAGAC
+AAAGCCACCCTTACCCGATTTTTTGCTTTCCACTTCATCCTACCCTTCAT
+CATCACAGCCCTGGTAGTCGTACATTTACTATTTCTTCACGAAACAGGAT
+CTAATAACCCCTCAGGAATCCCATCCGATATGGACAAAATCCCATTCCAC
+CCATATTATACAATTAAAGACATCCTAGGACTCCTCCTCCTGATCTTGCT
+CCTACTAACTCTAGTATTATTCTCCCCCGACCTCCTAGGAGACCCAGACA
+ACTACACCCCAGCTAACCCTCTCAGCACTCCCCCTCATATTAAACCAGAA
+TGGTACTTCCTGTTTGCCTACGCCATCCTACGCTCCATTCCCAACAAACT
+AGGCGGCGTATTAGCCCTAATCCTCTCCATCCTGATCCTAGCACTCATCC
+CCACCCTCCACATATCAAAACAACGAAGCATAATATTCCGGCCTCTCAGC
+CAATGCGTATTCTGACTCTTAGTGGCAGACTTACTGACACTAACATGAAT
+CGGCGGACAGCCAGTGGAACACCCATACGTAATTATCGGCCAACTGGCCT
+CAATCCTCTACTTCTCCCTAATTCTCATTTTTATACCACTCGCAAGCACC
+ATCGAAAACAATCTTCTAAAATGAAGAGTCCCTGTAGTATATCGCACATT
+ACCCTGGTCTTGTAAACCAGAAAAGGGGGAAAACGTTTCCTCCCAAGGAC
+TATCAAGGAAGAAGCTCTAGCTCCACCATCAACACCCAAAGCTGAAATTC
+TACTTAAACTATTCCTTGATTTCTTCCCCTAAACGACAACAATTTACCCT
+CATGTGCTATGTCAGTATCAGATTATACCCCCACATAACACCATACCCAC
+CTGACATGCAATATCTTATGAATGGCCTATGTACGTCGTGCATTAAATTG
+TCTGCCCCATGAATAATAAGCATGTACATAATATCATTTATCTTACATAA
+GTACATTATATTATTGATCGTGCATACCCCATCCAAGTCAAATCATTTCC
+AGTCAACACGCATATCACAGCCCATGTTCCACGAGCTTAATCACCAAGCC
+GCGGGAAATCAGCAACCCTCCCAACTACGTGTCCCAATCCTCGCTCCGGG
+CCCATCCAAACGTGGGGGTTTCTACAATGAAACTATACCTGGCATCTGGT
+TCTTTCTTCAGGGCCATTCCCACCCAACCTCGCCCATTCTTTCCCCTTAA
+ATAAGACATCTCGATGGACTAATGACTAATCAGCCCATGCTCACACATAA
+CTGTGATTTCATGCATTTGGTATCTTTTTATATTTGGGGATGCTATGACT
+CAGCTATGGCCGTCAAAGGCCTCGACGCAGTCAATTAAATTGAAGCTGGA
+CTTAAATTGAACGTTATTCCTCCGCATCAGCAACCATAAGGTGTTATTCA
+GTCCATGGTAGCGGGACATAGGAAACAAgtgcacctgtgcacctgtgcac
+ctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacct
+gtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgt
+gcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgc
+acctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcac
+ctgtgcacctACCCGCGCAGTAAGCAAGTAATATAGCTTTCTTAATCAAA
+CCCCCCCTACCCCCCATTAAACTCCACATATGTACATTCAACACAATCTT
+GCCAAACCCCAAAAACAAGACTAAACAATGCACAATACTTCATGAAGCTT
+AACCCTCGCATGCCAACCATAATAACTCAACACACCTAACAATCTTAACA
+GAACTTTCCCCCCGCCATTAATACCAACATGCTACTTTAATCAATAAAAT
+TTCCATAGACAGGCATCCCCCTAGATCTAATTTTCTAAATCTGTCAACCC
+TTCTTCCCCC
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cached_locally/chr_m.fasta.fai	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,1 @@
+chrM	16660	6	50	51
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cached_locally/fasta_indexes.loc	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,1 @@
+equCab2chrM	equCab2	Horse (Equus caballus): equCab2 chrM	${__HERE__}/chr_m.fasta
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.test	Fri Feb 22 15:37:27 2019 -0500
@@ -0,0 +1,6 @@
+<tables>
+    <table name="fasta_indexes" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="${__HERE__}/test-data/cached_locally/fasta_indexes.loc" />
+    </table>
+</tables>