Mercurial > repos > matthias > samtools_reheader
diff samtools_phase/test-data/samtools_phase_out_1_log.txt @ 0:96894a83999c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
| author | matthias |
|---|---|
| date | Fri, 22 Feb 2019 15:37:27 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/samtools_phase/test-data/samtools_phase_out_1_log.txt Fri Feb 22 15:37:27 2019 -0500 @@ -0,0 +1,30 @@ +CC +CC Descriptions: +CC +CC CC comments +CC PS start of a phase set +CC FL filtered region +CC M[012] markers; 0 for singletons, 1 for phased and 2 for filtered +CC EV supporting reads; SAM format +CC // end of a phase set +CC +CC Formats of PS, FL and M[012] lines (1-based coordinates): +CC +CC PS chr phaseSetStart phaseSetEnd +CC FL chr filterStart filterEnd +CC M? chr PS pos allele0 allele1 hetIndex #supports0 #errors0 #supp1 #err1 +CC +CC +PS chrI 1187 1290 +M1 chrI 1187 1187 T A 1 2 0 4 0 +M1 chrI 1187 1216 T A 2 3 0 4 0 +M1 chrI 1187 1222 C A 3 3 0 3 1 +M1 chrI 1187 1290 A T 4 1 0 0 0 +EV 0 chrI 1 40 3M * 0 0 AAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1145 +EV 0 chrI 1 40 3M * 0 0 TTC * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1157 +EV 0 chrI 1 40 3M * 0 0 TTC * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1141 +EV 0 chrI 1 40 3M * 0 0 AAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1147 +EV 0 chrI 1 40 3M * 0 0 AAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1176 +EV 0 chrI 1 40 3M * 0 0 AAC * YP:i:1 YF:i:0 YI:i:2 YO:i:1 YS:i:1164 +EV 0 chrI 2 40 3M * 0 0 TCA * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1215 +//