view samtools_phase/test-data/samtools_phase_out_1_log.txt @ 0:50ebde5d5c63 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty

CC
CC	Descriptions:
CC
CC	  CC      comments
CC	  PS      start of a phase set
CC	  FL      filtered region
CC	  M[012]  markers; 0 for singletons, 1 for phased and 2 for filtered
CC	  EV      supporting reads; SAM format
CC	  //      end of a phase set
CC
CC	Formats of PS, FL and M[012] lines (1-based coordinates):
CC
CC	  PS  chr  phaseSetStart  phaseSetEnd
CC	  FL  chr  filterStart    filterEnd
CC	  M?  chr  PS  pos  allele0  allele1  hetIndex  #supports0  #errors0  #supp1  #err1
CC
CC
PS	chrI	1187	1290
M1	chrI	1187	1187	T	A	1	2	0	4	0
M1	chrI	1187	1216	T	A	2	3	0	4	0
M1	chrI	1187	1222	C	A	3	3	0	3	1
M1	chrI	1187	1290	A	T	4	1	0	0	0
EV	0	chrI	1	40	3M	*	0	0	AAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1145
EV	0	chrI	1	40	3M	*	0	0	TTC	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1157
EV	0	chrI	1	40	3M	*	0	0	TTC	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1141
EV	0	chrI	1	40	3M	*	0	0	AAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1147
EV	0	chrI	1	40	3M	*	0	0	AAA	*	YP:i:1	YF:i:0	YI:i:3	YO:i:0	YS:i:1176
EV	0	chrI	1	40	3M	*	0	0	AAC	*	YP:i:1	YF:i:0	YI:i:2	YO:i:1	YS:i:1164
EV	0	chrI	2	40	3M	*	0	0	TCA	*	YP:i:0	YF:i:0	YI:i:3	YO:i:0	YS:i:1215
//