Mercurial > repos > matthias > samtools_depth
diff samtools_stats/test-data/12.3reads.overlap.expected @ 0:fe46361a85db draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
| author | matthias |
|---|---|
| date | Fri, 22 Feb 2019 16:06:58 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/samtools_stats/test-data/12.3reads.overlap.expected Fri Feb 22 16:06:58 2019 -0500 @@ -0,0 +1,759 @@ +# CHK, Checksum [2]Read Names [3]Sequences [4]Qualities +# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) +CHK 09f8b87f 140798ec 2b989f07 +# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. +SN raw total sequences: 3 +SN filtered sequences: 0 +SN sequences: 3 +SN is sorted: 1 +SN 1st fragments: 1 +SN last fragments: 2 +SN reads mapped: 3 +SN reads mapped and paired: 3 # paired-end technology bit set + both mates mapped +SN reads unmapped: 0 +SN reads properly paired: 3 # proper-pair bit set +SN reads paired: 3 # paired-end technology bit set +SN reads duplicated: 0 # PCR or optical duplicate bit set +SN reads MQ0: 0 # mapped and MQ=0 +SN reads QC failed: 0 +SN non-primary alignments: 0 +SN total length: 300 # ignores clipping +SN total first fragment length: 100 # ignores clipping +SN total last fragment length: 200 # ignores clipping +SN bases mapped: 300 # ignores clipping +SN bases mapped (cigar): 300 # more accurate +SN bases trimmed: 0 +SN bases duplicated: 0 +SN mismatches: 11 # from NM fields +SN error rate: 3.666667e-02 # mismatches / bases mapped (cigar) +SN average length: 100 +SN average first fragment length: 100 +SN average last fragment length: 100 +SN maximum length: 100 +SN maximum first fragment length: 100 +SN maximum last fragment length: 100 +SN average quality: 33.3 +SN insert size average: 180.0 +SN insert size standard deviation: 0.0 +SN inward oriented pairs: 1 +SN outward oriented pairs: 0 +SN pairs with other orientation: 0 +SN pairs on different chromosomes: 0 +SN percentage of properly paired reads (%): 100.0 +SN bases inside the target: 180 +SN percentage of target genome with coverage > 0 (%): 99.44 +# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part. +# Columns correspond to qualities and rows to cycles. 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0 0 0 0 +LFQ 54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 +LFQ 55 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 +LFQ 56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 +LFQ 57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 +LFQ 58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 +LFQ 59 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 +LFQ 60 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 +LFQ 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 +LFQ 62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 +LFQ 63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 +LFQ 64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 +LFQ 65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 +LFQ 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 +LFQ 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 +LFQ 68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 +LFQ 69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 +LFQ 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 +LFQ 71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 +LFQ 72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 +LFQ 73 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 +LFQ 74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 +LFQ 75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 +LFQ 77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 +LFQ 78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 +LFQ 79 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 +LFQ 81 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 +LFQ 83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 +LFQ 84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 +LFQ 85 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 86 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 +LFQ 87 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 +LFQ 88 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 +LFQ 89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 +LFQ 90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 91 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 94 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 +LFQ 96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 97 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 +LFQ 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 +# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part. +GCF 25.38 0 +GCF 51.26 1 +# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part. +GCL 24.87 0 +GCL 50.25 1 +GCL 51.26 0 +GCL 52.26 1 +# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] +GCC 1 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 2 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 3 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 4 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 5 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 6 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 7 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 8 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 9 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 10 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 11 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 12 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 13 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 14 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 15 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 16 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 17 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 18 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 19 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 20 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 21 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 22 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 23 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 24 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 25 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 26 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 27 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 28 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 29 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 30 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 31 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 32 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 33 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 34 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 35 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 36 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 37 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 38 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 39 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 40 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 41 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 42 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 43 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 44 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 45 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 46 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 47 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 48 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 49 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 50 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 51 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 52 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 53 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 54 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 55 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 56 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 57 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 58 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 59 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 60 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 61 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 62 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 63 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 64 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 65 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 66 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 67 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 68 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 69 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 70 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 71 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 72 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 73 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 74 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 75 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 76 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 77 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 78 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 79 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 80 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 81 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 82 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 83 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 84 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 85 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 86 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 87 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 88 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 89 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 90 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 91 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 92 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 93 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 94 0.00 33.33 0.00 66.67 0.00 0.00 +GCC 95 0.00 0.00 0.00 100.00 0.00 0.00 +GCC 96 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 97 33.33 33.33 0.00 33.33 0.00 0.00 +GCC 98 0.00 66.67 0.00 33.33 0.00 0.00 +GCC 99 0.00 100.00 0.00 0.00 0.00 0.00 +GCC 100 0.00 0.00 0.00 100.00 0.00 0.00 +# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] +FBC 1 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 2 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 3 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 4 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 5 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 6 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 7 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 8 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 9 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 10 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 11 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 12 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 13 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 14 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 15 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 16 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 17 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 18 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 19 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 20 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 21 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 22 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 23 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 24 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 25 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 26 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 27 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 28 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 29 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 30 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 31 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 32 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 33 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 34 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 35 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 36 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 37 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 38 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 39 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 40 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 41 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 42 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 43 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 44 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 45 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 46 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 47 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 48 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 49 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 50 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 51 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 52 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 53 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 54 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 55 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 56 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 57 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 58 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 59 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 60 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 61 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 62 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 63 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 64 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 65 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 66 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 67 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 68 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 69 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 70 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 71 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 72 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 73 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 74 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 75 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 76 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 77 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 78 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 79 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 80 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 81 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 82 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 83 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 84 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 85 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 86 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 87 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 88 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 89 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 90 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 91 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 92 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 93 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 94 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 95 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 96 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 97 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 98 0.00 0.00 0.00 100.00 0.00 0.00 +FBC 99 0.00 100.00 0.00 0.00 0.00 0.00 +FBC 100 0.00 0.00 0.00 100.00 0.00 0.00 +# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] +LBC 1 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 2 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 3 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 4 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 5 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 6 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 7 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 8 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 9 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 10 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 11 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 12 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 13 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 14 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 15 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 16 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 17 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 18 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 19 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 20 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 21 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 22 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 23 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 24 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 25 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 26 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 27 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 28 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 29 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 30 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 31 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 32 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 33 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 34 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 35 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 36 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 37 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 38 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 39 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 40 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 41 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 42 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 43 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 44 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 45 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 46 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 47 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 48 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 49 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 50 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 51 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 52 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 53 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 54 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 55 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 56 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 57 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 58 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 59 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 60 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 61 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 62 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 63 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 64 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 65 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 66 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 67 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 68 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 69 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 70 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 71 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 72 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 73 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 74 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 75 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 76 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 77 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 78 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 79 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 80 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 81 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 82 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 83 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 84 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 85 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 86 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 87 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 88 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 89 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 90 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 91 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 92 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 93 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 94 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 95 0.00 0.00 0.00 100.00 0.00 0.00 +LBC 96 0.00 50.00 0.00 50.00 0.00 0.00 +LBC 97 50.00 0.00 0.00 50.00 0.00 0.00 +LBC 98 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 99 0.00 100.00 0.00 0.00 0.00 0.00 +LBC 100 0.00 0.00 0.00 100.00 0.00 0.00 +# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs +IS 0 0 0 0 0 +IS 1 0 0 0 0 +IS 2 0 0 0 0 +IS 3 0 0 0 0 +IS 4 0 0 0 0 +IS 5 0 0 0 0 +IS 6 0 0 0 0 +IS 7 0 0 0 0 +IS 8 0 0 0 0 +IS 9 0 0 0 0 +IS 10 0 0 0 0 +IS 11 0 0 0 0 +IS 12 0 0 0 0 +IS 13 0 0 0 0 +IS 14 0 0 0 0 +IS 15 0 0 0 0 +IS 16 0 0 0 0 +IS 17 0 0 0 0 +IS 18 0 0 0 0 +IS 19 0 0 0 0 +IS 20 0 0 0 0 +IS 21 0 0 0 0 +IS 22 0 0 0 0 +IS 23 0 0 0 0 +IS 24 0 0 0 0 +IS 25 0 0 0 0 +IS 26 0 0 0 0 +IS 27 0 0 0 0 +IS 28 0 0 0 0 +IS 29 0 0 0 0 +IS 30 0 0 0 0 +IS 31 0 0 0 0 +IS 32 0 0 0 0 +IS 33 0 0 0 0 +IS 34 0 0 0 0 +IS 35 0 0 0 0 +IS 36 0 0 0 0 +IS 37 0 0 0 0 +IS 38 0 0 0 0 +IS 39 0 0 0 0 +IS 40 0 0 0 0 +IS 41 0 0 0 0 +IS 42 0 0 0 0 +IS 43 0 0 0 0 +IS 44 0 0 0 0 +IS 45 0 0 0 0 +IS 46 0 0 0 0 +IS 47 0 0 0 0 +IS 48 0 0 0 0 +IS 49 0 0 0 0 +IS 50 0 0 0 0 +IS 51 0 0 0 0 +IS 52 0 0 0 0 +IS 53 0 0 0 0 +IS 54 0 0 0 0 +IS 55 0 0 0 0 +IS 56 0 0 0 0 +IS 57 0 0 0 0 +IS 58 0 0 0 0 +IS 59 0 0 0 0 +IS 60 0 0 0 0 +IS 61 0 0 0 0 +IS 62 0 0 0 0 +IS 63 0 0 0 0 +IS 64 0 0 0 0 +IS 65 0 0 0 0 +IS 66 0 0 0 0 +IS 67 0 0 0 0 +IS 68 0 0 0 0 +IS 69 0 0 0 0 +IS 70 0 0 0 0 +IS 71 0 0 0 0 +IS 72 0 0 0 0 +IS 73 0 0 0 0 +IS 74 0 0 0 0 +IS 75 0 0 0 0 +IS 76 0 0 0 0 +IS 77 0 0 0 0 +IS 78 0 0 0 0 +IS 79 0 0 0 0 +IS 80 0 0 0 0 +IS 81 0 0 0 0 +IS 82 0 0 0 0 +IS 83 0 0 0 0 +IS 84 0 0 0 0 +IS 85 0 0 0 0 +IS 86 0 0 0 0 +IS 87 0 0 0 0 +IS 88 0 0 0 0 +IS 89 0 0 0 0 +IS 90 0 0 0 0 +IS 91 0 0 0 0 +IS 92 0 0 0 0 +IS 93 0 0 0 0 +IS 94 0 0 0 0 +IS 95 0 0 0 0 +IS 96 0 0 0 0 +IS 97 0 0 0 0 +IS 98 0 0 0 0 +IS 99 0 0 0 0 +IS 100 0 0 0 0 +IS 101 0 0 0 0 +IS 102 0 0 0 0 +IS 103 0 0 0 0 +IS 104 0 0 0 0 +IS 105 0 0 0 0 +IS 106 0 0 0 0 +IS 107 0 0 0 0 +IS 108 0 0 0 0 +IS 109 0 0 0 0 +IS 110 0 0 0 0 +IS 111 0 0 0 0 +IS 112 0 0 0 0 +IS 113 0 0 0 0 +IS 114 0 0 0 0 +IS 115 0 0 0 0 +IS 116 0 0 0 0 +IS 117 0 0 0 0 +IS 118 0 0 0 0 +IS 119 0 0 0 0 +IS 120 0 0 0 0 +IS 121 0 0 0 0 +IS 122 0 0 0 0 +IS 123 0 0 0 0 +IS 124 0 0 0 0 +IS 125 0 0 0 0 +IS 126 0 0 0 0 +IS 127 0 0 0 0 +IS 128 0 0 0 0 +IS 129 0 0 0 0 +IS 130 0 0 0 0 +IS 131 0 0 0 0 +IS 132 0 0 0 0 +IS 133 0 0 0 0 +IS 134 0 0 0 0 +IS 135 0 0 0 0 +IS 136 0 0 0 0 +IS 137 0 0 0 0 +IS 138 0 0 0 0 +IS 139 0 0 0 0 +IS 140 0 0 0 0 +IS 141 0 0 0 0 +IS 142 0 0 0 0 +IS 143 0 0 0 0 +IS 144 0 0 0 0 +IS 145 0 0 0 0 +IS 146 0 0 0 0 +IS 147 0 0 0 0 +IS 148 0 0 0 0 +IS 149 0 0 0 0 +IS 150 0 0 0 0 +IS 151 0 0 0 0 +IS 152 0 0 0 0 +IS 153 0 0 0 0 +IS 154 0 0 0 0 +IS 155 0 0 0 0 +IS 156 0 0 0 0 +IS 157 0 0 0 0 +IS 158 0 0 0 0 +IS 159 0 0 0 0 +IS 160 0 0 0 0 +IS 161 0 0 0 0 +IS 162 0 0 0 0 +IS 163 0 0 0 0 +IS 164 0 0 0 0 +IS 165 0 0 0 0 +IS 166 0 0 0 0 +IS 167 0 0 0 0 +IS 168 0 0 0 0 +IS 169 0 0 0 0 +IS 170 0 0 0 0 +IS 171 0 0 0 0 +IS 172 0 0 0 0 +IS 173 0 0 0 0 +IS 174 0 0 0 0 +IS 175 0 0 0 0 +IS 176 0 0 0 0 +IS 177 0 0 0 0 +IS 178 0 0 0 0 +IS 179 0 0 0 0 +IS 180 1 1 0 0 +# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count +RL 100 3 +# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count +FRL 100 1 +# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count +LRL 100 2 +# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions +ID 1 1 2 +# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev) +IC 19 0 0 1 0 +IC 92 0 0 1 0 +IC 98 1 0 0 0 +# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part. +COV [1-1] 1 79 +COV [2-2] 2 80 +COV [3-3] 3 20 +# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile +GCD 0.0 100.000 0.000 0.000 0.000 0.000 0.000