Mercurial > repos > matthias > samtools_depth
comparison samtools_stats/test-data/2.stats.expected @ 0:fe46361a85db draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
| author | matthias |
|---|---|
| date | Fri, 22 Feb 2019 16:06:58 -0500 |
| parents | |
| children |
comparison
equal
deleted
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replaced
| -1:000000000000 | 0:fe46361a85db |
|---|---|
| 1 # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities | |
| 2 # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) | |
| 3 CHK 1a1c1362 29c426ae 7bab45da | |
| 4 # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. | |
| 5 SN raw total sequences: 2 | |
| 6 SN filtered sequences: 0 | |
| 7 SN sequences: 2 | |
| 8 SN is sorted: 1 | |
| 9 SN 1st fragments: 1 | |
| 10 SN last fragments: 1 | |
| 11 SN reads mapped: 2 | |
| 12 SN reads mapped and paired: 2 # paired-end technology bit set + both mates mapped | |
| 13 SN reads unmapped: 0 | |
| 14 SN reads properly paired: 2 # proper-pair bit set | |
| 15 SN reads paired: 2 # paired-end technology bit set | |
| 16 SN reads duplicated: 0 # PCR or optical duplicate bit set | |
| 17 SN reads MQ0: 0 # mapped and MQ=0 | |
| 18 SN reads QC failed: 0 | |
| 19 SN non-primary alignments: 0 | |
| 20 SN total length: 70 # ignores clipping | |
| 21 SN total first fragment length: 35 # ignores clipping | |
| 22 SN total last fragment length: 35 # ignores clipping | |
| 23 SN bases mapped: 70 # ignores clipping | |
| 24 SN bases mapped (cigar): 70 # more accurate | |
| 25 SN bases trimmed: 0 | |
| 26 SN bases duplicated: 0 | |
| 27 SN mismatches: 0 # from NM fields | |
| 28 SN error rate: 0.000000e+00 # mismatches / bases mapped (cigar) | |
| 29 SN average length: 35 | |
| 30 SN average first fragment length: 35 | |
| 31 SN average last fragment length: 35 | |
| 32 SN maximum length: 35 | |
| 33 SN maximum first fragment length: 35 | |
| 34 SN maximum last fragment length: 35 | |
| 35 SN average quality: 255.0 | |
| 36 SN insert size average: 100.0 | |
| 37 SN insert size standard deviation: 0.0 | |
| 38 SN inward oriented pairs: 1 | |
| 39 SN outward oriented pairs: 0 | |
| 40 SN pairs with other orientation: 0 | |
| 41 SN pairs on different chromosomes: 0 | |
| 42 SN percentage of properly paired reads (%): 100.0 | |
| 43 # First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part. | |
| 44 # Columns correspond to qualities and rows to cycles. First column is the cycle number. | |
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| 117 # Mismatches per cycle and quality. Use `grep ^MPC | cut -f 2-` to extract this part. | |
| 118 # Columns correspond to qualities, rows to cycles. First column is the cycle number, second | |
| 119 # is the number of N's and the rest is the number of mismatches | |
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| 133 MPC 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 134 MPC 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 135 MPC 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 136 MPC 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 137 MPC 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 138 MPC 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 139 MPC 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 140 MPC 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 141 MPC 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 142 MPC 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 143 MPC 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 144 MPC 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 145 MPC 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 146 MPC 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 147 MPC 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 148 MPC 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 149 MPC 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 150 MPC 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 151 MPC 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 152 MPC 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 153 MPC 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 154 MPC 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 155 MPC 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 | |
| 156 # GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part. | |
| 157 GCF 28.39 0 | |
| 158 GCF 58.29 1 | |
| 159 # GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part. | |
| 160 GCL 21.36 0 | |
| 161 GCL 43.97 1 | |
| 162 # ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] | |
| 163 GCC 1 0.00 0.00 50.00 50.00 0.00 0.00 | |
| 164 GCC 2 0.00 0.00 50.00 50.00 0.00 0.00 | |
| 165 GCC 3 50.00 0.00 50.00 0.00 0.00 0.00 | |
| 166 GCC 4 0.00 50.00 50.00 0.00 0.00 0.00 | |
| 167 GCC 5 50.00 0.00 50.00 0.00 0.00 0.00 | |
| 168 GCC 6 0.00 0.00 50.00 50.00 0.00 0.00 | |
| 169 GCC 7 50.00 0.00 50.00 0.00 0.00 0.00 | |
| 170 GCC 8 50.00 0.00 0.00 50.00 0.00 0.00 | |
| 171 GCC 9 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 172 GCC 10 50.00 50.00 0.00 0.00 0.00 0.00 | |
| 173 GCC 11 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 174 GCC 12 50.00 50.00 0.00 0.00 0.00 0.00 | |
| 175 GCC 13 0.00 0.00 50.00 50.00 0.00 0.00 | |
| 176 GCC 14 50.00 0.00 0.00 50.00 0.00 0.00 | |
| 177 GCC 15 50.00 0.00 0.00 50.00 0.00 0.00 | |
| 178 GCC 16 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 179 GCC 17 0.00 50.00 0.00 50.00 0.00 0.00 | |
| 180 GCC 18 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 181 GCC 19 0.00 50.00 50.00 0.00 0.00 0.00 | |
| 182 GCC 20 50.00 0.00 50.00 0.00 0.00 0.00 | |
| 183 GCC 21 0.00 50.00 50.00 0.00 0.00 0.00 | |
| 184 GCC 22 0.00 0.00 50.00 50.00 0.00 0.00 | |
| 185 GCC 23 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 186 GCC 24 0.00 0.00 50.00 50.00 0.00 0.00 | |
| 187 GCC 25 0.00 0.00 50.00 50.00 0.00 0.00 | |
| 188 GCC 26 0.00 50.00 50.00 0.00 0.00 0.00 | |
| 189 GCC 27 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 190 GCC 28 50.00 0.00 50.00 0.00 0.00 0.00 | |
| 191 GCC 29 0.00 0.00 50.00 50.00 0.00 0.00 | |
| 192 GCC 30 50.00 50.00 0.00 0.00 0.00 0.00 | |
| 193 GCC 31 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 194 GCC 32 0.00 50.00 50.00 0.00 0.00 0.00 | |
| 195 GCC 33 50.00 0.00 0.00 50.00 0.00 0.00 | |
| 196 GCC 34 50.00 0.00 50.00 0.00 0.00 0.00 | |
| 197 GCC 35 0.00 0.00 50.00 50.00 0.00 0.00 | |
| 198 # ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] | |
| 199 FBC 1 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 200 FBC 2 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 201 FBC 3 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 202 FBC 4 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 203 FBC 5 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 204 FBC 6 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 205 FBC 7 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 206 FBC 8 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 207 FBC 9 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 208 FBC 10 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 209 FBC 11 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 210 FBC 12 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 211 FBC 13 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 212 FBC 14 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 213 FBC 15 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 214 FBC 16 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 215 FBC 17 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 216 FBC 18 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 217 FBC 19 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 218 FBC 20 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 219 FBC 21 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 220 FBC 22 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 221 FBC 23 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 222 FBC 24 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 223 FBC 25 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 224 FBC 26 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 225 FBC 27 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 226 FBC 28 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 227 FBC 29 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 228 FBC 30 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 229 FBC 31 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 230 FBC 32 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 231 FBC 33 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 232 FBC 34 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 233 FBC 35 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 234 # ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] | |
| 235 LBC 1 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 236 LBC 2 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 237 LBC 3 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 238 LBC 4 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 239 LBC 5 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 240 LBC 6 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 241 LBC 7 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 242 LBC 8 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 243 LBC 9 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 244 LBC 10 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 245 LBC 11 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 246 LBC 12 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 247 LBC 13 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 248 LBC 14 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 249 LBC 15 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 250 LBC 16 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 251 LBC 17 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 252 LBC 18 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 253 LBC 19 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 254 LBC 20 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 255 LBC 21 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 256 LBC 22 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 257 LBC 23 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 258 LBC 24 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 259 LBC 25 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 260 LBC 26 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 261 LBC 27 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 262 LBC 28 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 263 LBC 29 0.00 0.00 100.00 0.00 0.00 0.00 | |
| 264 LBC 30 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 265 LBC 31 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 266 LBC 32 0.00 100.00 0.00 0.00 0.00 0.00 | |
| 267 LBC 33 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 268 LBC 34 100.00 0.00 0.00 0.00 0.00 0.00 | |
| 269 LBC 35 0.00 0.00 0.00 100.00 0.00 0.00 | |
| 270 # Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs | |
| 271 IS 0 0 0 0 0 | |
| 272 IS 1 0 0 0 0 | |
| 273 IS 2 0 0 0 0 | |
| 274 IS 3 0 0 0 0 | |
| 275 IS 4 0 0 0 0 | |
| 276 IS 5 0 0 0 0 | |
| 277 IS 6 0 0 0 0 | |
| 278 IS 7 0 0 0 0 | |
| 279 IS 8 0 0 0 0 | |
| 280 IS 9 0 0 0 0 | |
| 281 IS 10 0 0 0 0 | |
| 282 IS 11 0 0 0 0 | |
| 283 IS 12 0 0 0 0 | |
| 284 IS 13 0 0 0 0 | |
| 285 IS 14 0 0 0 0 | |
| 286 IS 15 0 0 0 0 | |
| 287 IS 16 0 0 0 0 | |
| 288 IS 17 0 0 0 0 | |
| 289 IS 18 0 0 0 0 | |
| 290 IS 19 0 0 0 0 | |
| 291 IS 20 0 0 0 0 | |
| 292 IS 21 0 0 0 0 | |
| 293 IS 22 0 0 0 0 | |
| 294 IS 23 0 0 0 0 | |
| 295 IS 24 0 0 0 0 | |
| 296 IS 25 0 0 0 0 | |
| 297 IS 26 0 0 0 0 | |
| 298 IS 27 0 0 0 0 | |
| 299 IS 28 0 0 0 0 | |
| 300 IS 29 0 0 0 0 | |
| 301 IS 30 0 0 0 0 | |
| 302 IS 31 0 0 0 0 | |
| 303 IS 32 0 0 0 0 | |
| 304 IS 33 0 0 0 0 | |
| 305 IS 34 0 0 0 0 | |
| 306 IS 35 0 0 0 0 | |
| 307 IS 36 0 0 0 0 | |
| 308 IS 37 0 0 0 0 | |
| 309 IS 38 0 0 0 0 | |
| 310 IS 39 0 0 0 0 | |
| 311 IS 40 0 0 0 0 | |
| 312 IS 41 0 0 0 0 | |
| 313 IS 42 0 0 0 0 | |
| 314 IS 43 0 0 0 0 | |
| 315 IS 44 0 0 0 0 | |
| 316 IS 45 0 0 0 0 | |
| 317 IS 46 0 0 0 0 | |
| 318 IS 47 0 0 0 0 | |
| 319 IS 48 0 0 0 0 | |
| 320 IS 49 0 0 0 0 | |
| 321 IS 50 0 0 0 0 | |
| 322 IS 51 0 0 0 0 | |
| 323 IS 52 0 0 0 0 | |
| 324 IS 53 0 0 0 0 | |
| 325 IS 54 0 0 0 0 | |
| 326 IS 55 0 0 0 0 | |
| 327 IS 56 0 0 0 0 | |
| 328 IS 57 0 0 0 0 | |
| 329 IS 58 0 0 0 0 | |
| 330 IS 59 0 0 0 0 | |
| 331 IS 60 0 0 0 0 | |
| 332 IS 61 0 0 0 0 | |
| 333 IS 62 0 0 0 0 | |
| 334 IS 63 0 0 0 0 | |
| 335 IS 64 0 0 0 0 | |
| 336 IS 65 0 0 0 0 | |
| 337 IS 66 0 0 0 0 | |
| 338 IS 67 0 0 0 0 | |
| 339 IS 68 0 0 0 0 | |
| 340 IS 69 0 0 0 0 | |
| 341 IS 70 0 0 0 0 | |
| 342 IS 71 0 0 0 0 | |
| 343 IS 72 0 0 0 0 | |
| 344 IS 73 0 0 0 0 | |
| 345 IS 74 0 0 0 0 | |
| 346 IS 75 0 0 0 0 | |
| 347 IS 76 0 0 0 0 | |
| 348 IS 77 0 0 0 0 | |
| 349 IS 78 0 0 0 0 | |
| 350 IS 79 0 0 0 0 | |
| 351 IS 80 0 0 0 0 | |
| 352 IS 81 0 0 0 0 | |
| 353 IS 82 0 0 0 0 | |
| 354 IS 83 0 0 0 0 | |
| 355 IS 84 0 0 0 0 | |
| 356 IS 85 0 0 0 0 | |
| 357 IS 86 0 0 0 0 | |
| 358 IS 87 0 0 0 0 | |
| 359 IS 88 0 0 0 0 | |
| 360 IS 89 0 0 0 0 | |
| 361 IS 90 0 0 0 0 | |
| 362 IS 91 0 0 0 0 | |
| 363 IS 92 0 0 0 0 | |
| 364 IS 93 0 0 0 0 | |
| 365 IS 94 0 0 0 0 | |
| 366 IS 95 0 0 0 0 | |
| 367 IS 96 0 0 0 0 | |
| 368 IS 97 0 0 0 0 | |
| 369 IS 98 0 0 0 0 | |
| 370 IS 99 0 0 0 0 | |
| 371 IS 100 1 1 0 0 | |
| 372 # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count | |
| 373 RL 35 2 | |
| 374 # Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count | |
| 375 FRL 35 1 | |
| 376 # Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count | |
| 377 LRL 35 1 | |
| 378 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions | |
| 379 # Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev) | |
| 380 # Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part. | |
| 381 COV [1-1] 1 70 | |
| 382 # GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile | |
| 383 GCD 0.0 100.000 0.000 0.000 0.000 0.000 0.000 |