Mercurial > repos > matthias > samtools_depth
comparison samtools_sort/test-data/pos.sort.expected.sam @ 0:fe46361a85db draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 17bfa0739bf7c72cf92de0d7013437dff2bbba7f-dirty
| author | matthias |
|---|---|
| date | Fri, 22 Feb 2019 16:06:58 -0500 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:fe46361a85db |
|---|---|
| 1 @HD VN:1.4 SO:coordinate | |
| 2 @SQ SN:insert LN:599 | |
| 3 @SQ SN:ref1 LN:45 | |
| 4 @SQ SN:ref2 LN:40 | |
| 5 @SQ SN:ref3 LN:4 | |
| 6 @RG ID:fish PG:donkey | |
| 7 @RG ID:cow PU:13_&^&&*(:332 | |
| 8 @RG PU:*9u8jkjjkjd: ID:colt | |
| 9 @PG ID:bull PP:donkey | |
| 10 @PG ID:donkey | |
| 11 @PG ID:moose | |
| 12 @PG PP:moose ID:cow | |
| 13 @CO | |
| 14 r000 99 insert 50 30 10M = 80 30 ATTTAGCTAC AAAAAAAAAA RG:Z:cow PG:Z:bull | |
| 15 r000 211 insert 80 30 10M = 50 -30 CCCAATCATT AAAAAAAAAA RG:Z:cow PG:Z:bull | |
| 16 r001 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 RG:Z:fish PG:Z:colt | |
| 17 r002 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 PG:Z:colt | |
| 18 r003 0 ref1 9 30 5H6M * 0 0 AGCTAA * RG:Z:cow | |
| 19 r004 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * RG:Z:colt PG:Z:colt | |
| 20 r003 16 ref1 29 30 6H5M * 0 0 TAGGC * RG:Z:cow PG:Z:colt | |
| 21 r001 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * RG:Z:fish PG:Z:colt | |
| 22 x1 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * RG:Z:colt PG:Z:bull | |
| 23 x2 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? RG:Z:colt PG:Z:bull | |
| 24 x3 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? RG:Z:fish PG:Z:bull | |
| 25 x4 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? RG:Z:fish PG:Z:bull | |
| 26 x5 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? RG:Z:fish PG:Z:bull | |
| 27 x6 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? RG:Z:cow | |
| 28 u1 4 * 0 30 23M * 0 0 TAATTAAGTCTACAGAAAAAAAA ??????????????????????? |