comparison mitos.xml @ 1:7bd52e7ca02c draft default tip

planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/tools/mitos commit a7354d02377105590891f7337f472dc2a2f224a4-dirty

0:fce2e761129d

<tool id="mitos" name="MITOS" version="1.0.1">	
  <description>de-novo annotation of metazoan mitochondrial genomes</description>
  <!--Gene structure, regions which make an RNA product and features such as promoters, coding regions, gene fusion, splice sites etc.-->
  <edam_topics>
      <edam_topic>topic_0114</edam_topic>
  </edam_topics>

      <param argument="--fragovl" label="Fragment overlap" help="Maximum allowed overlap of proteins in the query (in percent of the shorter query range) for two hits to be counted as fragments of the same gene" type="integer" value="20" min="0" max="100"/>
      <param argument="--fragfac" label="Fragment quality factor" help="Maximum factor by which fragments of the same protein may differ in their quality" type="float" value="10"/>
      <param argument="--ststrange" label="Start/stop range" help="Number of aminoacids searched for start and stop codon of proteins" type="integer" value="6"/>
    </section>
    <param name="outputs" type="select" multiple="true" label="Additional outputs">
	    <option value="mito">mito</mito>
	    <option value="seq">SEQ</mito>
	    <option value="raw">zipped raw results</mito>
	    </param>
  </inputs>
  <outputs>
    <data name="bedout" format="bed" from_work_dir="outdir/result.bed"/>
    <data name="seqout" format="txt" from_work_dir="outdir/result.seq">
	    <filter>"seq" in outputs</filter>

1:7bd52e7ca02c

<tool id="mitos" name="MITOS" version="1.0.1+galaxy1">	
  <description>de-novo annotation of metazoan mitochondrial genomes</description>
  <!--Gene structure, regions which make an RNA product and features such as promoters, coding regions, gene fusion, splice sites etc.-->
  <edam_topics>
      <edam_topic>topic_0114</edam_topic>
  </edam_topics>

      <param argument="--fragovl" label="Fragment overlap" help="Maximum allowed overlap of proteins in the query (in percent of the shorter query range) for two hits to be counted as fragments of the same gene" type="integer" value="20" min="0" max="100"/>
      <param argument="--fragfac" label="Fragment quality factor" help="Maximum factor by which fragments of the same protein may differ in their quality" type="float" value="10"/>
      <param argument="--ststrange" label="Start/stop range" help="Number of aminoacids searched for start and stop codon of proteins" type="integer" value="6"/>
    </section>
    <param name="outputs" type="select" multiple="true" label="Additional outputs">
	    <option value="mito">mito</option>
	    <option value="seq">SEQ</option>
	    <option value="raw">zipped raw results</option>
	</param>
  </inputs>
  <outputs>
    <data name="bedout" format="bed" from_work_dir="outdir/result.bed"/>
    <data name="seqout" format="txt" from_work_dir="outdir/result.seq">
	    <filter>"seq" in outputs</filter>