# HG changeset patch # User matthias # Date 1541099309 14400 # Node ID 24c02af5fd77a38633c0f6196ab343c372766e78 # Parent f7ad11d3109839fa2190d3638b42a872115f7ff4 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_megan_tools commit 6a91765e86532f90dc2bdaae50d9d1a87cf62d9d-dirty diff -r f7ad11d31098 -r 24c02af5fd77 data_manager/.data_manager.py.swp Binary file data_manager/.data_manager.py.swp has changed diff -r f7ad11d31098 -r 24c02af5fd77 data_manager/.megan_tools_fetcher.xml.swp Binary file data_manager/.megan_tools_fetcher.xml.swp has changed diff -r f7ad11d31098 -r 24c02af5fd77 data_manager/data_manager.py --- a/data_manager/data_manager.py Thu Nov 01 14:40:23 2018 -0400 +++ b/data_manager/data_manager.py Thu Nov 01 15:08:29 2018 -0400 @@ -1,9 +1,8 @@ import argparse -import datetime import json import os import shutil -import tarfile +import sys import zipfile try: # For Python 3.0 and later @@ -92,7 +91,7 @@ data_manager_entry['name'] = FILE2NAME[fname] data_manager_entry['type'] = FILE2TYPE[fname] data_manager_entry['path'] = path - + data_manager_json = dict(data_tables=dict(megan_tools=data_manager_entry)) params = json.loads(open(outjson).read()) @@ -102,6 +101,7 @@ for filename in os.listdir(workdir): shutil.move(os.path.join(output_path, filename), target_directory) file(outjson, 'w').write(json.dumps(data_manager_json)) + sys.stderr.write("%s\n"%(json.dumps(data_manager_json, indent=4))) if __name__ == '__main__': diff -r f7ad11d31098 -r 24c02af5fd77 data_manager/megan_tools_fetcher.xml --- a/data_manager/megan_tools_fetcher.xml Thu Nov 01 14:40:23 2018 -0400 +++ b/data_manager/megan_tools_fetcher.xml Thu Nov 01 15:08:29 2018 -0400 @@ -1,5 +1,5 @@ - + Mapping files downloader