Mercurial > repos > matthias > data_manager_dada2

annotate data_manager_conf.xml @ 9:facf9e6c872c draft default tip

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planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit df2dfeb75f88b326f567cab8df4e6c4a7f2e548c
author matthias
date Tue, 15 Oct 2019 07:20:59 -0400
parents da93e6a3fe23
children
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8
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
parents:
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1 <?xml version="1.0"?>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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2 <data_managers>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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3 <data_manager tool_file="data_manager/dada2_fetcher.xml" id="dada2_fetcher">
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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4 <data_table name="dada2_taxonomy">
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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5 <output>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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6 <column name="value" />
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
parents:
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7 <column name="name" />
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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8 <column name="path" output_ref="out_file">
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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9 <move type="file" relativize_symlinks="True">
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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10 <source>${path}</source>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">dada2/${path}</target>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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12 </move>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/dada2/${path}</value_translation>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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14 <value_translation type="function">abspath</value_translation>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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15 </column>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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16 <column name="taxlevels" />
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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17 </output>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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18 </data_table>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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19 <data_table name="dada2_species">
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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20 <output>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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21 <column name="value" />
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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22 <column name="name" />
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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23 <column name="path" output_ref="out_file">
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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24 <move type="file" relativize_symlinks="True">
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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25 <source>${path}</source>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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26 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">dada2/${path}</target>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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27 </move>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/dada2/${path}</value_translation>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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29 <value_translation type="function">abspath</value_translation>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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30 </column>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
matthias
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31 </output>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
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32 </data_table>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
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33 </data_manager>
da93e6a3fe23 planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/master/data_managers/data_manager_dada2 commit 5d8314337211e041568578b0e85001af05b73c2a
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34 </data_managers>