Mercurial > repos > matthias > dada2_makesequencetable

comparison README.md @ 9:6da167015b3e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2/tools/dada2 commit a54770771e567c7ad8a9dd75cc4689c3935ef11c
author matthias
date Tue, 28 May 2019 12:19:29 -0400
parents ec4a183cc713
children
comparison
equal deleted inserted replaced
8:54f6cd01b02e 9:6da167015b3e
9 - removeBimeraDenovo 9 - removeBimeraDenovo
10 10
11 Datatypes 11 Datatypes
12 ========= 12 =========
13 13
14 The dada2 Galaxy wrappers use a few extra data types to ensure that only inputs of the correct type can be used. 14 The dada2 Galaxy wrappers use a few extra data types to ensure that only inputs of the correct type can be used, these datatypes are available from Galaxy release 19.05, for earlier releases they need to be added manually.
15 15
16 For the outputs of derep, dada, learnErrors, and mergePairs the following datatypes are used that derive from Rdata (which contains the named list that is returned from the corresponding dada function): 16 For the outputs of derep, dada, learnErrors, and mergePairs the following datatypes are used that derive from Rdata (which contains the named list that is returned from the corresponding dada function):
17 17
18 - dada2_derep (Rdata: named list see docs for derep-class) 18 - dada2_derep (Rdata: named list see docs for derep-class)
19 - dada2_dada (Rdata: named list, see docs for dada-class) 19 - dada2_dada (Rdata: named list, see docs for dada-class)
33 33
34 34
35 TODOs 35 TODOs
36 ===== 36 =====
37 37
38 - implememt getUniques tool to view intermediate results? 38 - implement getUniques tool to view intermediate results?
39 - implement tests for cached reference data